Pregenerated sensors for FUOM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025466Ensembl transcript IDs: ENSMUST00000026539.14, ENSMUST00000120034.8, ENSMUST00000121115.2, ENSMUST00000128527.8, ENSMUST00000142105.8, ENSMUST00000148716.8, ENSMUST00000211677.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTGTCAGAGGCCTTCTATCTAAGATGCCCGGCCCGGCTGTCACTTaGCCTCTGGCTCCGAGCTCAGAGATTGGGCCTACTCAAGAATCA | + |
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Preference number: 1 (lower is better) Translates to: SVRGLLSKMPGPAVT*PLAPSSEIGPTQES Trigger: TGATTCTTGAGTAGGCCCAATCTCTGAGCTCGGAGCCAGAGGGCAAGTGACAGCCGGGCCGGGCATCTTAGATAGAAGGCCTCTGACACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CCA 90 bp | CTCAAGATCTGCCATCTTCTTGAGCCCGAGGCTGATGTCCAGGTCTaGTTGCTGCCAAGGGAAGGTGGTCTCTATGAGGGTCCGAGGTCA | + |
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Preference number: 1 (lower is better) Translates to: LKICHLLEPEADVQV*LLPREGGLYEGPRS Trigger: TGACCTCGGACCCTCATAGAGACCACCTTCCCTTGGCAGCAACCAGACCTGGACATCAGCCTCGGGCTCAAGAAGATGGCAGATCTTGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR TCA 90 bp | TTGGAGAATAGGTGTGTCCCCTGCCAGGCAGGGATGTGGGCTGTGTaGCAGGCAGACCTTAGCAAGAATGAGGTGGCAAAGAGCAAGACC | + |
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Preference number: 1 (lower is better) Translates to: LENRCVPCQAGMWAV*QADLSKNEVAKSKT Trigger: GGTCTTGCTCTTTGCCACCTCATTCTTGCTAAGGTCTGCCTGTCACACAGCCCACATCCCTGCCTGGCAGGGGACACACCTATTCTCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| 3UTR CCA 90 bp | GAGGCCTTCTATCTAAGATGCCCGGCCCGGCTGTCACTTGCCCTCTaGCTCCGAGCTCAGAGATTGGGCCTACTCAAGAATCACTGTATA | + |
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Preference number: 1 (lower is better) Translates to: EAFYLRCPARLSLAL*LRAQRLGLLKNHCI Trigger: TATACAGTGATTCTTGAGTAGGCCCAATCTCTGAGCTCGGAGCCAGAGGGCAAGTGACAGCCGGGCCGGGCATCTTAGATAGAAGGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR GCA 90 bp | AGCTGCTCATGCATAGGTAGTGGGGTGCTCAACCTACCAAACATCTaGATGGGATCCAGCCCACACCCAGACCTCTCTGACCTTGAACCA | + |
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Preference number: 1 (lower is better) Translates to: SCSCIGSGVLNLPNI*MGSSPHPDLSDLEP Trigger: TGGTTCAAGGTCAGAGAGGTCTGGGTGTGGGCTGGATCCCATGCAGATGTTTGGTAGGTTGAGCACCCCACTACCTATGCATGAGCAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR TCA 90 bp | GTTGGAGGGACCTTGTCTGAAAGTCCTCTAGGTGGACTCCTGATTTaGGTCCCTCATCAGGAGATAGCCAGGAGGCAGCAGCAATGGAAC | + |
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Preference number: 1 (lower is better) Translates to: VGGTLSESPLGGLLI*VPHQEIARRQQQWN Trigger: GTTCCATTGCTGCTGCCTCCTGGCTATCTCCTGATGAGGGACTCAAATCAGGAGTCCACCTAGAGGACTTTCAGACAAGGTCCCTCCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128527.8 |
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| 3UTR CCA 90 bp | TTAAAGCTTGACAATGACTCCCTCCCCGATCAATCTCACAAGTCATaGAAGGGGGAATTTGTCAGGGTCAGCAGAGTCTCTCAAGATCTG | + |
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Preference number: 1 (lower is better) Translates to: LKLDNDSLPDQSHKS*KGEFVRVSRVSQDL Trigger: CAGATCTTGAGAGACTCTGCTGACCCTGACAAATTCCCCCTTCCATGACTTGTGAGATTGATCGGGGAGGGAGTCATTGTCAAGCTTTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026539.14 ENSMUST00000148716.8 |
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| 3UTR CCA 90 bp | CAGAGATTGGGCCTACTCAAGAATCACTGTATATTGCAATCCAAGTaGCTAATACAGAAGCCCCTACCCCATACAAGCCTAGTGCAACCA | + |
|
Preference number: 1 (lower is better) Translates to: QRLGLLKNHCILQSK*LIQKPLPHTSLVQP Trigger: TGGTTGCACTAGGCTTGTATGGGGTAGGGGCTTCTGTATTAGCCACTTGGATTGCAATATACAGTGATTCTTGAGTAGGCCCAATCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR-3UTR CCA 90 bp | CCTAGGGTGAGGGTGTACATCTATAGGTTAGAGGGGACCCCATCCTGGAGCCCAGGGAAGAGAGGGAGGTaGCCACAGGGCTCAGACACA | + |
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Preference number: 2 (lower is better) Translates to: PRVRVYIYRLEGTPSWSPGKRGR*PQGSDT Trigger: TGTGTCTGAGCCCTGTGGCCACCTCCCTCTCTTCCC...TGGGCTCCAGGATGGGGTCCCCTCTAACCTATAGATGTACACCCTCACCCTAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| 3UTR CAA 90 bp | TGCCCGGCCCGGCTGTCACTTGCCCTCTGGCTCCGAGCTCAGAGATaGGGCCTACTCAAGAATCACTGTATATTGCAATCCAAGTGGCTA | + |
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Preference number: 2 (lower is better) Translates to: CPARLSLALWLRAQR*GLLKNHCILQSKWL Trigger: TAGCCACTTGGATTGCAATATACAGTGATTCTTGAGTAGGCCCAATCTCTGAGCTCGGAGCCAGAGGGCAAGTGACAGCCGGGCCGGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR-3UTR GCA 90 bp | GGACAGGAGGCTAGTGGGAAGGATCTTGTGAGGGAGGCTATATCTACGTCTCCTTCCAGGATGAAGAAGTaGCCCAGTCACGGCCCATCC | + |
|
Preference number: 2 (lower is better) Translates to: GQEASGKDLVREAISTSPSRMKK*PSHGPS Trigger: GGATGGGCCGTGACTGGGGCACTTCTTCATCCTGGA...AGGAGACGTAGATATAGCCTCCCTCACAAGATCCTTCCCACTAGCCTCCTGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120034.8 |
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| 3UTR-3UTR CCA 90 bp | CCTAGGGTGAGGGTGTACATCTATAGGTTAGAGGGGACCCCATCCTGGAGCCCAGATAAGTCAGGATTCTaGGGGGAAGAGGCTTGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: PRVRVYIYRLEGTPSWSPDKSGF*GEEAWE Trigger: TTCCCAAGCCTCTTCCCCCCAGAATCCTGACTTATC...TGGGCTCCAGGATGGGGTCCCCTCTAACCTATAGATGTACACCCTCACCCTAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| 3UTR-3UTR GCA 90 bp | TTATCTGCCTTCAAAGTCCCCTGCTTAGGACAAGAGTACTCAAGGGGTCCTGCTAATAGGTGTGTCCCCTaGCAGGCAGGGATGTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: LSAFKVPCLGQEYSRGPANRCVP*QAGMWA Trigger: AGCCCACATCCCTGCCTGGCAGGGGACACACCTATT...AGCAGGACCCCTTGAGTACTCTTGTCCTAAGCAGGGGACTTTGAAGGCAGATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| 3UTR-3UTR CCA 90 bp | ATCGAGGTCACATCATGGGGCCCATTCGGACAGGAGGCTAGTGGGAAGGATCTTACAGATGCCATGACCTaGGTGGAGACTGAGGATATC | + |
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Preference number: 2 (lower is better) Translates to: IEVTSWGPFGQEASGKDLTDAMT*VETEDI Trigger: GATATCCTCAGTCTCCACCCAGGTCATGGCATCTGT...AAGATCCTTCCCACTAGCCTCCTGTCCGAATGGGCCCCATGATGTGACCTCGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120034.8 |
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| 3UTR CAA 90 bp | ATGACTCCCTCCCCGATCAATCTCACAAGTCATGGAAGGGGGAATTaGTCAGGGTCAGCAGAGTCTCTCAAGATCTGCCATCTTCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: MTPSPINLTSHGRGN*SGSAESLKICHLLE Trigger: CTCAAGAAGATGGCAGATCTTGAGAGACTCTGCTGACCCTGACAAATTCCCCCTTCCATGACTTGTGAGATTGATCGGGGAGGGAGTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026539.14 ENSMUST00000148716.8 |
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| 3UTR-3UTR GCA 90 bp | ACCCAGACCTCTCTGACCTTGAACCAGAGAGGACAGTTTACCATTACTAGCAGCGAGTCTCTCAAGATCTaGCATCTTCTTGAGCCCGAG | + |
|
Preference number: 2 (lower is better) Translates to: TQTSLTLNQRGQFTITSSESLKI*HLLEPE Trigger: CTCGGGCTCAAGAAGATGGCAGATCTTGAGAGACTC...GCTGCTAGTAATGGTAAACTGTCCTCTCTGGTTCAAGGTCAGAGAGGTCTGGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CAA 90 bp | TGGCTCCGAGCTCAGAGATTGGGCCTACTCAAGAATCACTGTATATaGCAATCCAAGTGGCTAATACAGAAGCCCCTACCCCATACAAGC | + |
|
Preference number: 2 (lower is better) Translates to: WLRAQRLGLLKNHCI*QSKWLIQKPLPHTS Trigger: GCTTGTATGGGGTAGGGGCTTCTGTATTAGCCACTTGGATTGCAATATACAGTGATTCTTGAGTAGGCCCAATCTCTGAGCTCGGAGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR-3UTR GCA 90 bp | CTCTGGCTCCGAGCTCAGAGATTGGGCCTACTCAAGAATCACTGTATATTGCAAGATGTTTCCATAGAGTaGCATCTCCCTTCATGGGCA | + |
|
Preference number: 2 (lower is better) Translates to: LWLRAQRLGLLKNHCILQDVSIE*HLPSWA Trigger: TGCCCATGAAGGGAGATGGCACTCTATGGAAACATC...TTGCAATATACAGTGATTCTTGAGTAGGCCCAATCTCTGAGCTCGGAGCCAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CAA 90 bp | AAGGGACTGTCTAGTCACCTACTGAACTCAGTTGGTTTGCCCCTTTaGGCAAGTATAGACAAAGCTGCTACGAACATTCACCAGTTGTCT | + |
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Preference number: 2 (lower is better) Translates to: KGLSSHLLNSVGLPL*ASIDKAATNIHQLS Trigger: AGACAACTGGTGAATGTTCGTAGCAGCTTTGTCTATACTTGCCAAAAGGGGCAAACCAACTGAGTTCAGTAGGTGACTAGACAGTCCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CAA 90 bp | GCTCTATCAAAGGGACTGTCTAGTCACCTACTGAACTCAGTTGGTTaGCCCCTTTTGGCAAGTATAGACAAAGCTGCTACGAACATTCAC | + |
|
Preference number: 2 (lower is better) Translates to: ALSKGLSSHLLNSVG*PLLASIDKAATNIH Trigger: GTGAATGTTCGTAGCAGCTTTGTCTATACTTGCCAAAAGGGGCAAACCAACTGAGTTCAGTAGGTGACTAGACAGTCCCTTTGATAGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR-3UTR GCA 90 bp | CCTCCTAAAGGATGTAACTGGGGCTGGAGAGATAAGAGCACTTGCTCTATCAAAGCCCTCAAATCACCATaGTTCTTTCCATGTGGATTT | + |
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Preference number: 2 (lower is better) Translates to: PPKGCNWGWRDKSTCSIKALKSP*FFPCGF Trigger: AAATCCACATGGAAAGAAGCATGGTGATTTGAGGGC...TTTGATAGAGCAAGTGCTCTTATCTCTCCAGCCCCAGTTACATCCTTTAGGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR-3UTR GCA 90 bp | GAGATAAGAGCACTTGCTCTATCAAAGGGACTGTCTAGTCACCTACTGAACTCAAAACAGTTTCTTGTCTaGCTGGGTTCTTCCCCTCAT | + |
|
Preference number: 2 (lower is better) Translates to: EIRALALSKGLSSHLLNSKQFLV*LGSSPH Trigger: ATGAGGGGAAGAACCCAGGCAGACAAGAAACTGTTT...TGAGTTCAGTAGGTGACTAGACAGTCCCTTTGATAGAGCAAGTGCTCTTATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR-3UTR TCA 90 bp | ATTCAAATCTCTCTAGCTTCATCAGGGTTTTCTAGAAGACAAAAAGGCATGGTTGGTGGACTCCTGATTTaGGTCCCTCATCAGGAGATA | + |
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Preference number: 2 (lower is better) Translates to: IQISLASSGFSRRQKGMVGGLLI*VPHQEI Trigger: TATCTCCTGATGAGGGACTCAAATCAGGAGTCCACC...AACCATGCCTTTTTGTCTTCTAGAAAACCCTGATGAAGCTAGAGAGATTTGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128527.8 |
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| 3UTR GCA 72 bp | GGCCTTCTATCTAAGATGCCCGGCCCGGCTGTCACTTaGCCTCTGGCTCCGAGCTCAGAGATTGGGCCTACT | + |
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Preference number: 3 (lower is better) Translates to: GLLSKMPGPAVT*PLAPSSEIGPT Trigger: AGTAGGCCCAATCTCTGAGCTCGGAGCCAGAGGGCAAGTGACAGCCGGGCCGGGCATCTTAGATAGAAGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CCA 72 bp | AAGCGTCCAGGTCAGAGCGGGATCGAGGTCACATCATaGGGCCCATTCGGACAGGAGGCTAGTGGGAAGGAT | + |
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Preference number: 3 (lower is better) Translates to: KRPGQSGIEVTS*GPFGQEASGKD Trigger: ATCCTTCCCACTAGCCTCCTGTCCGAATGGGCCCCATGATGTGACCTCGATCCCGCTCTGACCTGGACGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120034.8 |
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| 3UTR TCA 72 bp | AGGTGTGTCCCCTGCCAGGCAGGGATGTGGGCTGTGTaGCAGGCAGACCTTAGCAAGAATGAGGTGGCAAAG | + |
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Preference number: 3 (lower is better) Translates to: RCVPCQAGMWAV*QADLSKNEVAK Trigger: CTTTGCCACCTCATTCTTGCTAAGGTCTGCCTGTCACACAGCCCACATCCCTGCCTGGCAGGGGACACACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| 3UTR GCA 72 bp | CCCCATACAAGCCTAGTGCAACCAGCTCCAGCCCCCTaGTGTGCATCTTACTCAACATCAACCACTGGGCCT | + |
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Preference number: 3 (lower is better) Translates to: PHTSLVQPAPAP*CASYSTSTTGP Trigger: AGGCCCAGTGGTTGATGTTGAGTAAGATGCACAGCAGGGGGCTGGAGCTGGTTGCACTAGGCTTGTATGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CCA 72 bp | TACTCAAGGGGTCCTGCTCAGACCAAACGGCTCCTTTaGAGAATAGGTGTGTCCCCTGCCAGGCAGGGATGT | + |
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Preference number: 3 (lower is better) Translates to: YSRGPAQTKRLL*RIGVSPARQGC Trigger: ACATCCCTGCCTGGCAGGGGACACACCTATTCTCCAAAGGAGCCGTTTGGTCTGAGCAGGACCCCTTGAGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| 3UTR CCA 72 bp | TGCCATCTTCTTGAGCCCGAGGCTGATGTCCAGGTCTaGTTGCTGCCAAGGGAAGGTGGTCTCTATGAGGGT | + |
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Preference number: 3 (lower is better) Translates to: CHLLEPEADVQV*LLPREGGLYEG Trigger: ACCCTCATAGAGACCACCTTCCCTTGGCAGCAACCAGACCTGGACATCAGCCTCGGGCTCAAGAAGATGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CCA 72 bp | TATCTAAGATGCCCGGCCCGGCTGTCACTTGCCCTCTaGCTCCGAGCTCAGAGATTGGGCCTACTCAAGAAT | + |
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Preference number: 3 (lower is better) Translates to: YLRCPARLSLAL*LRAQRLGLLKN Trigger: ATTCTTGAGTAGGCCCAATCTCTGAGCTCGGAGCCAGAGGGCAAGTGACAGCCGGGCCGGGCATCTTAGATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR TCA 72 bp | CCAGGTCTGGTTGCTGCCAAGGGAAGGTGGTCTCTATaGGGGTCCGAGGTCAAGAGTTCCCTTCTTGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: PGLVAAKGRWSL*GSEVKSSLLED Trigger: ATCCTCAAGAAGGGAACTCTTGACCTCGGACCCTCATAGAGACCACCTTCCCTTGGCAGCAACCAGACCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR TCA 72 bp | TCGTCACGGGCACGTAGGGGATGCTTCCTTGGGAGCTaGTGGCATCCATGGAACTCACCACAAGACAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: SSRARRGCFLGS*WHPWNSPQDKF Trigger: GAACTTGTCTTGTGGTGAGTTCCATGGATGCCATCAGCTCCCAAGGAAGCATCCCCTACGTGCCCGTGACGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR GCA 72 bp | TGCATAGGTAGTGGGGTGCTCAACCTACCAAACATCTaGATGGGATCCAGCCCACACCCAGACCTCTCTGAC | + |
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Preference number: 3 (lower is better) Translates to: CIGSGVLNLPNI*MGSSPHPDLSD Trigger: GTCAGAGAGGTCTGGGTGTGGGCTGGATCCCATGCAGATGTTTGGTAGGTTGAGCACCCCACTACCTATGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR TCA 72 bp | GCCCATTCGGACAGGAGGCTAGTGGGAAGGATCTTGTaGGGGAGGCTATATCTACGTCTCCTTCTCCACAGA | + |
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Preference number: 3 (lower is better) Translates to: AHSDRRLVGRIL*GRLYLRLLLHR Trigger: TCTGTGGAGAAGGAGACGTAGATATAGCCTCCCTCACAAGATCCTTCCCACTAGCCTCCTGTCCGAATGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120034.8 |
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| 3UTR TCA 72 bp | GTCTGCCTGGGTTCTTCCCCTCATCTCTGGCTATACTaGGCCTCAGCTGATCCTTTACCTCCTGGGACAACT | + |
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Preference number: 3 (lower is better) Translates to: VCLGSSPHLWLY*ASADPLPPGTT Trigger: AGTTGTCCCAGGAGGTAAAGGATCAGCTGAGGCTCAGTATAGCCAGAGATGAGGGGAAGAACCCAGGCAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CCA 72 bp | GTCCCTCATCAGGAGATAGCCAGGAGGCAGCAGCAATaGAACCCTGGTCTTCTAGGCTCCAATCTTCTGGTT | + |
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Preference number: 3 (lower is better) Translates to: VPHQEIARRQQQ*NPGLLGSNLLV Trigger: AACCAGAAGATTGGAGCCTAGAAGACCAGGGTTCCATTGCTGCTGCCTCCTGGCTATCTCCTGATGAGGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128527.8 |
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| 3UTR-3UTR CAA 90 bp | AAGTCATGGAAGGGGGAATTTGTCAGGGTCAGCAGAGTCTCTCAAGATCTGCCAGATGTCCAGGTCTGGTaGCTGCCAAGGGAAGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: KSWKGEFVRVSRVSQDLPDVQVW*LPREGG Trigger: ACCACCTTCCCTTGGCAGCAACCAGACCTGGACATC...TGGCAGATCTTGAGAGACTCTGCTGACCCTGACAAATTCCCCCTTCCATGACTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026539.14 ENSMUST00000148716.8 |
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| 3UTR TCA 72 bp | ACCTTGTCTGAAAGTCCTCTAGGTGGACTCCTGATTTaGGTCCCTCATCAGGAGATAGCCAGGAGGCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TLSESPLGGLLI*VPHQEIARRQQ Trigger: CTGCTGCCTCCTGGCTATCTCCTGATGAGGGACTCAAATCAGGAGTCCACCTAGAGGACTTTCAGACAAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128527.8 |
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| 3UTR CCA 72 bp | GACAATGACTCCCTCCCCGATCAATCTCACAAGTCATaGAAGGGGGAATTTGTCAGGGTCAGCAGAGTCTCT | + |
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Preference number: 3 (lower is better) Translates to: DNDSLPDQSHKS*KGEFVRVSRVS Trigger: AGAGACTCTGCTGACCCTGACAAATTCCCCCTTCCATGACTTGTGAGATTGATCGGGGAGGGAGTCATTGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026539.14 ENSMUST00000148716.8 |
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| 3UTR GCA 72 bp | AAGAGTTCCCTTCTTGAGGATGATGTTTCCATAGAGTaGCATCTCCCTTCATGGGCAAAGCAGGAGTGGAGG | + |
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Preference number: 3 (lower is better) Translates to: KSSLLEDDVSIE*HLPSWAKQEWR Trigger: CCTCCACTCCTGCTTTGCCCATGAAGGGAGATGGCACTCTATGGAAACATCATCCTCAAGAAGGGAACTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR CCA 72 bp | AGTGCCTGGTGTTTTATTGGGACCAAAAGCATCTACTaGCCCAGGAGGGTGACTGTGACCAGGTTTCATTCT | + |
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Preference number: 3 (lower is better) Translates to: SAWCFIGTKSIY*PRRVTVTRFHS Trigger: AGAATGAAACCTGGTCACAGTCACCCTCCTGGGCCAGTAGATGCTTTTGGTCCCAATAAAACACCAGGCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR GCA 72 bp | AAGAGTTCCCTTCTTGAGGATGATGTTTCCATAGAGTaGCATCTCCCCGGTTGCAACCACAGCAAATGCCTT | + |
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Preference number: 3 (lower is better) Translates to: KSSLLEDDVSIE*HLPGCNHSKCL Trigger: AAGGCATTTGCTGTGGTTGCAACCGGGGAGATGGCACTCTATGGAAACATCATCCTCAAGAAGGGAACTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211677.2 |
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| 3UTR CCA 72 bp | GAACCTCTGGGGCCATTTCCTCCTAAAGGATGTAACTaGGGCTGGAGAGATAAGAGCACTTGCTCTATCAAA | + |
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Preference number: 3 (lower is better) Translates to: EPLGPFPPKGCN*GWRDKSTCSIK Trigger: TTTGATAGAGCAAGTGCTCTTATCTCTCCAGCCCCAGTTACATCCTTTAGGAGGAAATGGCCCCAGAGGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| 3UTR TCA 72 bp | TTGAACCAGAGAGGACAGTTTACCATTACTAGCAGCTaGGCAGTCATCTCTGAGTGTCAGAGGCCTTCTATC | + |
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Preference number: 3 (lower is better) Translates to: LNQRGQFTITSS*AVISECQRPSI Trigger: GATAGAAGGCCTCTGACACTCAGAGATGACTGCTCAGCTGCTAGTAATGGTAAACTGTCCTCTCTGGTTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| CDS-3UTR TCA 90 bp | CCATTCGGACAGGAGGCTAGTGGGAAGGATCTTGTGAGGGAGGCTATATCTACGTGGGCACCAGGTCCATaGCAGCAGCCGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: PFGQEASGKDLVREAISTWAPGP*QQPGFP Trigger: TGGAAAGCCCGGCTGCTGTCATGGACCTGGTGCCCA...CGTAGATATAGCCTCCCTCACAAGATCCTTCCCACTAGCCTCCTGTCCGAATGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120034.8 |
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| CDS-3UTR TCA 90 bp | GAGAAGAAGGGATTCATAACGCTTCCATATCGGGGTCTGCAGGCCCTTCTCCTTTGGGCACCAGGTCCATaGCAGCAGCCGTCTGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: EKKGFITLPYRGLQALLLWAPGP*QQPSAR Trigger: CCGAGCAGACGGCTGCTGTCATGGACCTGGTGCCCA...AAGGAGAAGGGCCTGCAGACCCCGATATGGAAGCGTTATGAATCCCTTCTTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211677.2 |
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| CDS-3UTR TCA 90 bp | CAGCAGCAATGGAACCCTGGTCTTCTAGGCTCCAATCTTCTGGTTCTCCTGATGTGGGCACCAGGTCCATaGCAGCAGCCGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: QQQWNPGLLGSNLLVLLMWAPGP*QQPGFP Trigger: TGGAAAGCCCGGCTGCTGTCATGGACCTGGTGCCCA...CATCAGGAGAACCAGAAGATTGGAGCCTAGAAGACCAGGGTTCCATTGCTGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128527.8 |
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| 3UTR CAA 72 bp | CAGGGTCAGCAGAGTCTCTCAAGATCTGCCATCTTCTaGAGCCCGAGGCTGATGTCCAGGTCTGGTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QGQQSLSRSAIF*SPRLMSRSGCC Trigger: GCAGCAACCAGACCTGGACATCAGCCTCGGGCTCAAGAAGATGGCAGATCTTGAGAGACTCTGCTGACCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026539.14 ENSMUST00000148716.8 |
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| 3UTR CAA 72 bp | CTGAGGATTCGTCACGGGCACGTAGGGGATGCTTCCTaGGGAGCTGATGGCATCCATGGAACTCACCACAAG | + |
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Preference number: 4 (lower is better) Translates to: LRIRHGHVGDAS*GADGIHGTHHK Trigger: CTTGTGGTGAGTTCCATGGATGCCATCAGCTCCCAAGGAAGCATCCCCTACGTGCCCGTGACGAATCCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| CDS-3UTR TCA 90 bp | TGGAAGGGGGAATTTGTCAGGGTCAGCAGAGTCTCTCAAGATCTGCCATCTTCTTGGGCACCAGGTCCATaGCAGCAGCCGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: WKGEFVRVSRVSQDLPSSWAPGP*QQPGFP Trigger: TGGAAAGCCCGGCTGCTGTCATGGACCTGGTGCCCA...AGAAGATGGCAGATCTTGAGAGACTCTGCTGACCCTGACAAATTCCCCCTTCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026539.14 ENSMUST00000148716.8 |
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| CDS-3UTR TCA 90 bp | TTATCTGCCTTCAAAGTCCCCTGCTTAGGACAAGAGTACTCAAGGGGTCCTGCTTGGGCACCAGGTCCATaGCAGCAGCCGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LSAFKVPCLGQEYSRGPAWAPGP*QQPGFP Trigger: TGGAAAGCCCGGCTGCTGTCATGGACCTGGTGCCCA...AGCAGGACCCCTTGAGTACTCTTGTCCTAAGCAGGGGACTTTGAAGGCAGATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| CDS-3UTR GCA 90 bp | ATCGAGGTCACATCATGGGGCCCATTCGGACAGGAGGCTAGTGGGAAGGATCTTTTCCATATCGGGGTCTaGAGGCCCTTCTCCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: IEVTSWGPFGQEASGKDLFHIGV*RPFSLS Trigger: TGACAAGGAGAAGGGCCTGCAGACCCCGATATGGAA...AAGATCCTTCCCACTAGCCTCCTGTCCGAATGGGCCCCATGATGTGACCTCGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000120034.8 |
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| CDS-3UTR GCA 90 bp | TTATCTGCCTTCAAAGTCCCCTGCTTAGGACAAGAGTACTCAAGGGGTCCTGCTCCTTCAGAGCCCAGATaGCAGGAGACAGAGCGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LSAFKVPCLGQEYSRGPAPSEPR*QETERP Trigger: GGGACGCTCTGTCTCCTGGCATCTGGGCTCTGAAGG...AGCAGGACCCCTTGAGTACTCTTGTCCTAAGCAGGGGACTTTGAAGGCAGATAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| CDS-3UTR GCA 90 bp | CAGCAGCAATGGAACCCTGGTCTTCTAGGCTCCAATCTTCTGGTTCTCCTGATGTTCCATATCGGGGTCTaGAGGCCCTTCTCCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QQQWNPGLLGSNLLVLLMFHIGV*RPFSLS Trigger: TGACAAGGAGAAGGGCCTGCAGACCCCGATATGGAA...CATCAGGAGAACCAGAAGATTGGAGCCTAGAAGACCAGGGTTCCATTGCTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128527.8 |
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| CDS-3UTR GCA 90 bp | TTATCTGCCTTCAAAGTCCCCTGCTTAGGACAAGAGTACTCAAGGGGTCCTGCTTTCCATATCGGGGTCTaGAGGCCCTTCTCCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LSAFKVPCLGQEYSRGPAFHIGV*RPFSLS Trigger: TGACAAGGAGAAGGGCCTGCAGACCCCGATATGGAA...AGCAGGACCCCTTGAGTACTCTTGTCCTAAGCAGGGGACTTTGAAGGCAGATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| CDS-3UTR TCA 90 bp | GACTACAAAACCTTTAGATTAAAGCTTGACAATGACTCCCTCCCCGATCAATCTTGGGCACCAGGTCCATaGCAGCAGCCGGGCTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DYKTFRLKLDNDSLPDQSWAPGP*QQPGFP Trigger: TGGAAAGCCCGGCTGCTGTCATGGACCTGGTGCCCA...AGATTGATCGGGGAGGGAGTCATTGTCAAGCTTTAATCTAAAGGTTTTGTAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026539.14 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS-3UTR TCA 90 bp | ATAGCCAGGAGGCAGCAGCAATGGAACCCTGGTCTTCTAGGCTCCAATCTTCTGTATCTCTTCTCTGTCTaGGCTTTACAGTCAGCTTCG | + |
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Preference number: 4 (lower is better) Translates to: IARRQQQWNPGLLGSNLLYLFSV*ALQSAS Trigger: CGAAGCTGACTGTAAAGCTCAGACAGAGAAGAGATA...CAGAAGATTGGAGCCTAGAAGACCAGGGTTCCATTGCTGCTGCCTCCTGGCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128527.8 |
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| 3UTR CAA 72 bp | AAGGGACTGTCTAGTCACCTACTGAACTCAGTTGGTTaGCCCCTTTTGGCAAGTATAGACAAAGCTGCTACG | + |
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Preference number: 4 (lower is better) Translates to: KGLSSHLLNSVG*PLLASIDKAAT Trigger: CGTAGCAGCTTTGTCTATACTTGCCAAAAGGGGCAAACCAACTGAGTTCAGTAGGTGACTAGACAGTCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148716.8 |
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| CDS-3UTR GCA 90 bp | GACTACAAAACCTTTAGATTAAAGCTTGACAATGACTCCCTCCCCGATCAATCTTTCCATATCGGGGTCTaGAGGCCCTTCTCCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: DYKTFRLKLDNDSLPDQSFHIGV*RPFSLS Trigger: TGACAAGGAGAAGGGCCTGCAGACCCCGATATGGAA...AGATTGATCGGGGAGGGAGTCATTGTCAAGCTTTAATCTAAAGGTTTTGTAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000026539.14 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS-3UTR GCA 90 bp | CATGACTACAAAACCTTTAGATTAAAGCTTGACAATGACTCCCTCCCCGATCAATTCCATATCGGGGTCTaGAGGCCCTTCTCCTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: HDYKTFRLKLDNDSLPDQFHIGV*RPFSLS Trigger: TGACAAGGAGAAGGGCCTGCAGACCCCGATATGGAA...TTGATCGGGGAGGGAGTCATTGTCAAGCTTTAATCTAAAGGTTTTGTAGTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000026539.14 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS-3UTR GCA 90 bp | CATGACTACAAAACCTTTAGATTAAAGCTTGACAATGACTCCCTCCCCGATCAAGAGTCTCTCAAGATCTaGCATCTTCTTGAGCCCGAG | + |
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Preference number: 4 (lower is better) Translates to: HDYKTFRLKLDNDSLPDQESLKI*HLLEPE Trigger: CTCGGGCTCAAGAAGATGGCAGATCTTGAGAGACTC...TTGATCGGGGAGGGAGTCATTGTCAAGCTTTAATCTAAAGGTTTTGTAGTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142105.8 |
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| CDS GCA 90 bp | GAGCCTCAGCACAGCCTCCAGAAGCTGTGGGATGTCCAGGCCGTCTaGTCGGATCTCCACAGGTCCGCACTGGCAGATGGAGGAGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: EPQHSLQKLWDVQAV*SDLHRSALADGGGR Trigger: CCTACCTCCTCCATCTGCCAGTGCGGACCTGTGGAGATCCGAGCAGACGGCCTGGACATCCCACAGCTTCTGGAGGCTGTGCTGAGGCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026539.14 ENSMUST00000120034.8 ENSMUST00000121115.2 ENSMUST00000128527.8 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS GCA 90 bp | GAGGAGGTAGGGAAGTTCGCATCAGCAAGGACAATTTCGTCTCCATaGCCCATCCGCGCAAGCGCGAACAACAGCTCAGGAGACAGCACC | + |
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Preference number: 5 (lower is better) Translates to: EEVGKFASARTISSP*PIRASANNSSGDST Trigger: GGTGCTGTCTCCTGAGCTGTTGTTCGCGCTTGCGCGGATGGGGCATGGAGACGAAATTGTCCTTGCTGATGCGAACTTCCCTACCTCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026539.14 ENSMUST00000120034.8 ENSMUST00000121115.2 ENSMUST00000142105.8 ENSMUST00000148716.8 ENSMUST00000211677.2 |
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| CDS CCA 90 bp | TGTGGGATGTCCAGGCCGTCTGCTCGGATCTCCACAGGTCCGCACTaGCAGATGGAGGAGGTAGGGAAGTTCGCATCAGCAAGGACAATT | + |
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Preference number: 5 (lower is better) Translates to: CGMSRPSARISTGPH*QMEEVGKFASARTI Trigger: AATTGTCCTTGCTGATGCGAACTTCCCTACCTCCTCCATCTGCCAGTGCGGACCTGTGGAGATCCGAGCAGACGGCCTGGACATCCCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026539.14 ENSMUST00000120034.8 ENSMUST00000121115.2 ENSMUST00000128527.8 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS GCA 90 bp | TTCAGAGCCCAGATGCCAGGAGACAGAGCGTCCCATGGTTGGGGCTaGACTCACTTTACAGTCAGCTTCGAGAAGAAGGGATTCATAACG | + |
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Preference number: 5 (lower is better) Translates to: FRAQMPGDRASHGWG*THFTVSFEKKGFIT Trigger: CGTTATGAATCCCTTCTTCTCGAAGCTGACTGTAAAGTGAGTGCAGCCCCAACCATGGGACGCTCTGTCTCCTGGCATCTGGGCTCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| CDS TCA 72 bp | GCAGGCCCTTCTCCTTGTCACTGGGCACCAGGTCCATaGCAGCAGCCGGGCTTTCCACGTAGGTGTCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: AGPSPCHWAPGP*QQPGFPRRCPG Trigger: CCCTGGACACCTACGTGGAAAGCCCGGCTGCTGTCATGGACCTGGTGCCCAGTGACAAGGAGAAGGGCCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026539.14 ENSMUST00000120034.8 ENSMUST00000121115.2 ENSMUST00000128527.8 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS GCA 72 bp | CACAGCCTCCAGAAGCTGTGGGATGTCCAGGCCGTCTaGTCGGATCTCCACAGGTCCGCACTGGCAGATGGA | + |
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Preference number: 6 (lower is better) Translates to: HSLQKLWDVQAV*SDLHRSALADG Trigger: TCCATCTGCCAGTGCGGACCTGTGGAGATCCGAGCAGACGGCCTGGACATCCCACAGCTTCTGGAGGCTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026539.14 ENSMUST00000120034.8 ENSMUST00000121115.2 ENSMUST00000128527.8 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS CCA 72 bp | TCCAGGCCGTCTGCTCGGATCTCCACAGGTCCGCACTaGCAGATGGAGGAGGTAGGGAAGTTCGCATCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SRPSARISTGPH*QMEEVGKFASA Trigger: TGCTGATGCGAACTTCCCTACCTCCTCCATCTGCCAGTGCGGACCTGTGGAGATCCGAGCAGACGGCCTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026539.14 ENSMUST00000120034.8 ENSMUST00000121115.2 ENSMUST00000128527.8 ENSMUST00000142105.8 ENSMUST00000148716.8 |
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| CDS CCA 72 bp | CAGCAGCCGTCTGCTCGGATCTCCACAGGTCCGCACTaGCAGATGGAGGAGGTAGGGAAGTTCGCATCAGCA | + |
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Preference number: 6 (lower is better) Translates to: QQPSARISTGPH*QMEEVGKFASA Trigger: TGCTGATGCGAACTTCCCTACCTCCTCCATCTGCCAGTGCGGACCTGTGGAGATCCGAGCAGACGGCTGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211677.2 |
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| CDS CAA 72 bp | CAGGGTCAGCAGAGTCTCTCAAGATCTGCCATCTTCTaGAGCCCGAGGCTGATGTCCAGGTCTGGTTGCCGG | + |
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Preference number: 6 (lower is better) Translates to: QGQQSLSRSAIF*SPRLMSRSGCR Trigger: CCGGCAACCAGACCTGGACATCAGCCTCGGGCTCAAGAAGATGGCAGATCTTGAGAGACTCTGCTGACCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142105.8 |
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| CDS GCA 72 bp | GGGAAGTTCGCATCAGCAAGGACAATTTCGTCTCCATaGCCCATCCGCGCAAGCGCGAACAACAGCTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: GKFASARTISSP*PIRASANNSSG Trigger: TCCTGAGCTGTTGTTCGCGCTTGCGCGGATGGGGCATGGAGACGAAATTGTCCTTGCTGATGCGAACTTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000026539.14 ENSMUST00000120034.8 ENSMUST00000121115.2 ENSMUST00000142105.8 ENSMUST00000148716.8 ENSMUST00000211677.2 |
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| CDS CCA 72 bp | CTTCAGAGCCCAGATGCCAGGAGACAGAGCGTCCCATaGTTGGGGCTGCACTCACTTTACAGTCAGCTTCGA | + |
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Preference number: 6 (lower is better) Translates to: LQSPDARRQSVP*LGLHSLYSQLR Trigger: TCGAAGCTGACTGTAAAGTGAGTGCAGCCCCAACCATGGGACGCTCTGTCTCCTGGCATCTGGGCTCTGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000121115.2 |
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| CDS CAA 72 bp | TCTGGTTGCCGGTTGCAACCACAGCAAATGCCTTTTTaGCACGTTCATAAAATTCAAATCTCTCTAGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SGCRLQPQQMPF*HVHKIQISLAS Trigger: TGAAGCTAGAGAGATTTGAATTTTATGAACGTGCAAAAAAGGCATTTGCTGTGGTTGCAACCGGCAACCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142105.8 |
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