Pregenerated sensors for FUNDC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025040Ensembl transcript IDs: ENSMUST00000026016.13, ENSMUST00000177213.8
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCAAGAATTCTATGAACAAGAATAACAATATTGAAAGCTGTTCTTaGACAAGAGATGCTCGGAACAAGTGTGAGGCTGGCCCAGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: AKNSMNKNNNIESCS*TRDARNKCEAGPEK Trigger: TTTCTCTGGGCCAGCCTCACACTTGTTCCGAGCATCTCTTGTCCAAGAACAGCTTTCAATATTGTTATTCTTGTTCATAGAATTCTTGGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026016.13 |
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| 3UTR TCA 90 bp | CCTATACTGTTCTGCTGTTTTCCCCAGGGACAGCCAAGAATTCTATaGACAAGAATAACAATATTGAAAGCTGTTCTTGGACAAGAGATG | + |
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Preference number: 1 (lower is better) Translates to: PILFCCFPQGQPRIL*TRITILKAVLGQEM Trigger: CATCTCTTGTCCAAGAACAGCTTTCAATATTGTTATTCTTGTTCATAGAATTCTTGGCTGTCCCTGGGGAAAACAGCAGAACAGTATAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026016.13 |
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| 3UTR-3UTR CCA 90 bp | AGCTGCTTCATTTGCAATCGTCCAGCCGGCTGTTCCTTACTTTGGAGACTGGTATCTTCCTCTCATTGTTaGATCCACTACCATAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: SCFICNRPAGCSLLWRLVSSSHC*IHYHRA Trigger: GGCTCTATGGTAGTGGATCCAACAATGAGAGGAAGA...TACCAGTCTCCAAAGTAAGGAACAGCCGGCTGGACGATTGCAAATGAAGCAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026016.13 ENSMUST00000177213.8 |
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| 3UTR-3UTR GCA 90 bp | ATCCATGGTTGCTCAAGAATACTATTGTGTACACAGCACATAGGTTGTCTTACAGGCAAAATGCTAAGCTaGTTCATTTGCAATCGTCCA | + |
|
Preference number: 2 (lower is better) Translates to: IHGCSRILLCTQHIGCLTGKMLS*FICNRP Trigger: TGGACGATTGCAAATGAAGCAGCTTAGCATTTTGCC...TGTAAGACAACCTATGTGCTGTGTACACAATAGTATTCTTGAGCAACCATGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026016.13 ENSMUST00000177213.8 |
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| 3UTR-3UTR CCA 90 bp | TGGACAGTACATGTAACAGCTTTTTCTGTCTCCACTATATCCAGTGATGATAATTCTTCCTCTCATTGTTaGATCCACTACCATAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: WTVHVTAFSVSTISSDDNSSSHC*IHYHRA Trigger: GGCTCTATGGTAGTGGATCCAACAATGAGAGGAAGA...ATTATCATCACTGGATATAGTGGAGACAGAAAAAGCTGTTACATGTACTGTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026016.13 ENSMUST00000177213.8 |
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| 3UTR CCA 72 bp | TCTATGAACAAGAATAACAATATTGAAAGCTGTTCTTaGACAAGAGATGCTCGGAACAAGTGTGAGGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: SMNKNNNIESCS*TRDARNKCEAG Trigger: GCCAGCCTCACACTTGTTCCGAGCATCTCTTGTCCAAGAACAGCTTTCAATATTGTTATTCTTGTTCATAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026016.13 |
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| 3UTR-3UTR CAA 90 bp | TTTCATTGGACAGTACATGTAACAGCTTTTTCTGTCTCCACTATATCCAGTGATTGCTCAAGAATACTATaGTGTACACAGCACATAGGT | + |
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Preference number: 3 (lower is better) Translates to: FHWTVHVTAFSVSTISSDCSRIL*CTQHIG Trigger: ACCTATGTGCTGTGTACACAATAGTATTCTTGAGCA...ATCACTGGATATAGTGGAGACAGAAAAAGCTGTTACATGTACTGTCCAATGAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026016.13 ENSMUST00000177213.8 |
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| 3UTR-3UTR CAA 90 bp | TGGACAGTACATGTAACAGCTTTTTCTGTCTCCACTATATCCAGTGATGATAATTGCTCAAGAATACTATaGTGTACACAGCACATAGGT | + |
|
Preference number: 3 (lower is better) Translates to: WTVHVTAFSVSTISSDDNCSRIL*CTQHIG Trigger: ACCTATGTGCTGTGTACACAATAGTATTCTTGAGCA...ATTATCATCACTGGATATAGTGGAGACAGAAAAAGCTGTTACATGTACTGTCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026016.13 ENSMUST00000177213.8 |
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| 3UTR CAA 72 bp | GTAAGCTTCAGGCGGCAAAATGCTAAGCTGCTTCATTaGCAATCGTCCAGCCGGCTGTTCCTTACTTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: VSFRRQNAKLLH*QSSSRLFLTLE Trigger: CTCCAAAGTAAGGAACAGCCGGCTGGACGATTGCAAATGAAGCAGCTTAGCATTTTGCCGCCTGAAGCTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026016.13 ENSMUST00000177213.8 |
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| CDS-3UTR CCA 90 bp | CTGAAGACTCTAACCTATACTGTTCTGCTGTTTTCCCCAGGGACAGCCAAGAATATAGGTCCGGAACTGTaGCCAAATACTCGATTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LKTLTYTVLLFSPGTAKNIGPEL*PNTRFH Trigger: GTGGAATCGAGTATTTGGCCACAGTTCCGGACCTAT...ATTCTTGGCTGTCCCTGGGGAAAACAGCAGAACAGTATAGGTTAGAGTCTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026016.13 |
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| CDS-3UTR GCA 90 bp | AGCTGCTTCATTTGCAATCGTCCAGCCGGCTGTTCCTTACTTTGGAGACTGGTAAGGTGCTGCTTTATTTaGTCGCTTCTTTATCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: SCFICNRPAGCSLLWRLVRCCFI*SLLYLS Trigger: AGACAGATAAAGAAGCGAGCAAATAAAGCAGCACCT...TACCAGTCTCCAAAGTAAGGAACAGCCGGCTGGACGATTGCAAATGAAGCAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026016.13 ENSMUST00000177213.8 |
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| CDS-3UTR GCA 90 bp | ACAAGAATAACAATATTGAAAGCTGTTCTTGGACAAGAGATGCTCGGAACAAGTAGGTGCTGCTTTATTTaGTCGCTTCTTTATCTGTCT | + |
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Preference number: 4 (lower is better) Translates to: TRITILKAVLGQEMLGTSRCCFI*SLLYLS Trigger: AGACAGATAAAGAAGCGAGCAAATAAAGCAGCACCT...ACTTGTTCCGAGCATCTCTTGTCCAAGAACAGCTTTCAATATTGTTATTCTTGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026016.13 |
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