Pregenerated sensors for FUCA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028673Ensembl transcript IDs: ENSMUST00000030434.5
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGGCTTGCTTGGCATGACAGCCTGGCAAGCCCGGAGGGCAGGACCTaGTCCATCTCTGCGGGACTGGTACCAACCAATAAGGCAGAGGGG | + |
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Preference number: 1 (lower is better) Translates to: WLAWHDSLASPEGRT*SISAGLVPTNKAEG Trigger: CCCCTCTGCCTTATTGGTTGGTACCAGTCCCGCAGAGATGGACCAGGTCCTGCCCTCCGGGCTTGCCAGGCTGTCATGCCAAGCAAGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR TCA 90 bp | GTACCAACCAATAAGGCAGAGGGGGTTGAGCTCGCCAGACCTCTCTaGCCTGCTCCCACAGGCAAGAGGATGACTTGGCTCATTATCAGG | + |
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Preference number: 1 (lower is better) Translates to: VPTNKAEGVELARPL*PAPTGKRMTWLIIR Trigger: CCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAACCCCCTCTGCCTTATTGGTTGGTAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR GCA 90 bp | CTTGGGAGATTGACCACTGGGTGGAAGGAAGGGAAGCTACTTTATTaGAGGGATGGTAAGCAGCGCCCCAGGCAGTCTGTCCTTGAGCTC | + |
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Preference number: 1 (lower is better) Translates to: LGRLTTGWKEGKLLY*RDGKQRPRQSVLEL Trigger: GAGCTCAAGGACAGACTGCCTGGGGCGCTGCTTACCATCCCTGCAATAAAGTAGCTTCCCTTCCTTCCACCCAGTGGTCAATCTCCCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR TCA 90 bp | TTGAGCTCGCCAGACCTCTCTGACCTGCTCCCACAGGCAAGAGGATaGCTTGGCTCATTATCAGGTAGGTCATCAGAGAAGAGAGGGAAG | + |
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Preference number: 1 (lower is better) Translates to: LSSPDLSDLLPQARG*LGSLSGRSSEKRGK Trigger: CTTCCCTCTCTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR TCA 90 bp | GCATCGCCTTCTTTCATTGGTATCTCTGTGTCAGAGACCATCCCGTaGGAAAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCC | + |
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Preference number: 1 (lower is better) Translates to: ASPSFIGISVSETIP*ESEPFTISLTGQMA Trigger: GGCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTTTCTCACGGGATGGTCTCTGACACAGAGATACCAATGAAAGAAGGCGATGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR CCA 90 bp | CCACCAGAAATGCTAGCAATGGCTCGCCCATCCATTAGAACGGCTTaGGAGATTGACCACTGGGTGGAAGGAAGGGAAGCTACTTTATTG | + |
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Preference number: 1 (lower is better) Translates to: PPEMLAMARPSIRTA*EIDHWVEGREATLL Trigger: CAATAAAGTAGCTTCCCTTCCTTCCACCCAGTGGTCAATCTCCCAAGCCGTTCTAATGGATGGGCGAGCCATTGCTAGCATTTCTGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR CAA 90 bp | GGACGGGATATCTCTGAAGACGTGCTCAGTGGCAGAGCGTTTGGCTaGCTTGGCATGACAGCCTGGCAAGCCCGGAGGGCAGGACCTGGT | + |
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Preference number: 2 (lower is better) Translates to: GRDISEDVLSGRAFG*LGMTAWQARRAGPG Trigger: ACCAGGTCCTGCCCTCCGGGCTTGCCAGGCTGTCATGCCAAGCAAGCCAAACGCTCTGCCACTGAGCACGTCTTCAGAGATATCCCGTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR-3UTR TCA 90 bp | AAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCCTCATGCTAGGAGCTCTCGCCAGACCTCTCTaGCCTGCTCCCACAGGCAAG | + |
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Preference number: 2 (lower is better) Translates to: KRALHNLPDRPNGLMLGALARPL*PAPTGK Trigger: CTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAG...AGCTCCTAGCATGAGGCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGAGGGGGTTGAGCTCGCCAGACCTCTCTGACCTGCTCCCACAGGCAAGATCCATTAGAACGGCTTaGGAGATTGACCACTGGGTG | + |
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Preference number: 2 (lower is better) Translates to: RQRGLSSPDLSDLLPQARSIRTA*EIDHWV Trigger: CACCCAGTGGTCAATCTCCCAAGCCGTTCTAATGGA...TCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAACCCCCTCTGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR-3UTR CCA 90 bp | AAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCCTCATGCTAGGAGCTGTGACTCAGCTGAGCTaGCCAGGTCTCTCTGCCCAC | + |
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Preference number: 2 (lower is better) Translates to: KRALHNLPDRPNGLMLGAVTQLS*PGLSAH Trigger: GTGGGCAGAGAGACCTGGCCAGCTCAGCTGAGTCAC...AGCTCCTAGCATGAGGCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR-3UTR TCA 90 bp | GACCATCCCGTGAGAAAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCTTCCCTGTCTCTTCCTaGCTCCCAAGCCATCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: DHPVRKRALHNLPDRPNGFPVSS*LPSHPR Trigger: CCTTGGATGGCTTGGGAGTCAGGAAGAGACAGGGAA...GCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTTTCTCACGGGATGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR-3UTR CCA 90 bp | GACCATCCCGTGAGAAAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCCCATCTCTGCGGGACTaGTACCAACCAATAAGGCAG | + |
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Preference number: 2 (lower is better) Translates to: DHPVRKRALHNLPDRPNGPSLRD*YQPIRQ Trigger: CTGCCTTATTGGTTGGTACCAGTCCCGCAGAGATGG...GCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTTTCTCACGGGATGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR CAA 90 bp | GCTCGCCAGACCTCTCTGACCTGCTCCCACAGGCAAGAGGATGACTaGGCTCATTATCAGGTAGGTCATCAGAGAAGAGAGGGAAGTTCC | + |
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Preference number: 2 (lower is better) Translates to: ARQTSLTCSHRQEDD*AHYQVGHQRREGSS Trigger: GGAACTTCCCTCTCTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR-3UTR CCA 90 bp | GAGGATGACTTGGCTCATTATCAGGTAGGTCATCAGAGAAGAGAGGGAAGTTCCACCCTAGTGGAGGCATaGGTGACTCAGCTGAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: EDDLAHYQVGHQRREGSSTLVEA*VTQLSW Trigger: CCAGCTCAGCTGAGTCACCCATGCCTCCACTAGGGT...GGAACTTCCCTCTCTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR-3UTR TCA 90 bp | GAGGATGACTTGGCTCATTATCAGGTAGGTCATCAGAGAAGAGAGGGAAGTTCCAACGGCTTGGGAGATTaGCCACTGGGTGGAAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: EDDLAHYQVGHQRREGSSNGLGD*PLGGRK Trigger: CTTCCTTCCACCCAGTGGTCAATCTCCCAAGCCGTT...GGAACTTCCCTCTCTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR TCA 72 bp | ACGTGCTCAGTGGCAGAGCGTTTGGCTTGCTTGGCATaGCAGCCTGGCAAGCCCGGAGGGCAGGACCTGGTC | + |
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Preference number: 3 (lower is better) Translates to: TCSVAERLACLA*QPGKPGGQDLV Trigger: GACCAGGTCCTGCCCTCCGGGCTTGCCAGGCTGTCATGCCAAGCAAGCCAAACGCTCTGCCACTGAGCACGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR CCA 72 bp | TGGCATGACAGCCTGGCAAGCCCGGAGGGCAGGACCTaGTCCATCTCTGCGGGACTGGTACCAACCAATAAG | + |
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Preference number: 3 (lower is better) Translates to: WHDSLASPEGRT*SISAGLVPTNK Trigger: CTTATTGGTTGGTACCAGTCCCGCAGAGATGGACCAGGTCCTGCCCTCCGGGCTTGCCAGGCTGTCATGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR CCA 72 bp | CAGAGAAGAGAGGGAAGTTCCACCCTAGTGGAGGCATaGGTGACTCAGCTGAGCTGGCCAGGTCTCTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: QRREGSSTLVEA*VTQLSWPGLSA Trigger: GGCAGAGAGACCTGGCCAGCTCAGCTGAGTCACCCATGCCTCCACTAGGGTGGAACTTCCCTCTCTTCTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR TCA 72 bp | AATAAGGCAGAGGGGGTTGAGCTCGCCAGACCTCTCTaGCCTGCTCCCACAGGCAAGAGGATGACTTGGCTC | + |
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Preference number: 3 (lower is better) Translates to: NKAEGVELARPL*PAPTGKRMTWL Trigger: GAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAACCCCCTCTGCCTTATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR GCA 72 bp | TTGACCACTGGGTGGAAGGAAGGGAAGCTACTTTATTaGAGGGATGGTAAGCAGCGCCCCAGGCAGTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: LTTGWKEGKLLY*RDGKQRPRQSV Trigger: GACAGACTGCCTGGGGCGCTGCTTACCATCCCTGCAATAAAGTAGCTTCCCTTCCTTCCACCCAGTGGTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR TCA 72 bp | CCACGAATAACTGAATCCCGAGGGACGGGATATCTCTaGAGACGTGCTCAGTGGCAGAGCGTTTGGCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: PRITESRGTGYL*RRAQWQSVWLA Trigger: AGCAAGCCAAACGCTCTGCCACTGAGCACGTCTTCAGAGATATCCCGTCCCTCGGGATTCAGTTATTCGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR TCA 72 bp | CCAGACCTCTCTGACCTGCTCCCACAGGCAAGAGGATaGCTTGGCTCATTATCAGGTAGGTCATCAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: PDLSDLLPQARG*LGSLSGRSSEK Trigger: CTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR GCA 72 bp | ATGGAGACCTTGATAGGTACAATCTACTTGGTCATCTaGTTCTCTTTTCTCTTCCAATCCCATATCCTTACA | + |
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Preference number: 3 (lower is better) Translates to: METLIGTIYLVI*FSFLFQSHILT Trigger: TGTAAGGATATGGGATTGGAAGAGAAAAGAGAAGCAGATGACCAAGTAGATTGTACCTATCAAGGTCTCCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR TCA 90 bp | GACGTGCTCAGTGGCAGAGCGTTTGGCTTGCTTGGCATGACAGCCTGGCAAGCCAAGAGTTCGGCCCACTaGTCCGGGTGGAAGAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: DVLSGRAFGLLGMTAWQAKSSAH*SGWKKR Trigger: GCGCTTCTTCCACCCGGATCAGTGGGCCGAACTCTT...GGCTTGCCAGGCTGTCATGCCAAGCAAGCCAAACGCTCTGCCACTGAGCACGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | AGGCAGAGGGGGTTGAGCTCGCCAGACCTCTCTGACCTGCTCCCACAGGCAAGACGATCGCCCTGCCAGTaGCACCAGAACCATTCACTG | + |
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Preference number: 4 (lower is better) Translates to: RQRGLSSPDLSDLLPQARRSPCQ*HQNHSL Trigger: CAGTGAATGGTTCTGGTGGCACTGGCAGGGCGATCG...TCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAACCCCCTCTGCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR TCA 90 bp | GACCATCCCGTGAGAAAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCGGAAGAAGCGCGCTGTaGACTGCGGTGCGAAGTCGG | + |
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Preference number: 4 (lower is better) Translates to: DHPVRKRALHNLPDRPNGGRSAL*TAVRSR Trigger: CCGACTTCGCACCGCAGTTCACAGCGCGCTTCTTCC...GCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTTTCTCACGGGATGGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR CAA 72 bp | ATCTCTGAAGACGTGCTCAGTGGCAGAGCGTTTGGCTaGCTTGGCATGACAGCCTGGCAAGCCCGGAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: ISEDVLSGRAFG*LGMTAWQARRA Trigger: TGCCCTCCGGGCTTGCCAGGCTGTCATGCCAAGCAAGCCAAACGCTCTGCCACTGAGCACGTCTTCAGAGAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR TCA 90 bp | ATGGGTGACTCAGCTGAGCTGGCCAGGTCTCTCTGCCCACCAGAAATGCTAGCACGAAGTCGGCGTAGCTaGAGCCGGGCGGGTAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: MGDSAELARSLCPPEMLARSRRS*SRAGSF Trigger: AAAACTACCCGCCCGGCTTCAGCTACGCCGACTTCG...TGCTAGCATTTCTGGTGGGCAGAGAGACCTGGCCAGCTCAGCTGAGTCACCCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | CTCAGTGGCAGAGCGTTTGGCTTGCTTGGCATGACAGCCTGGCAAGCCCGGAGGCTCCCACTTGTGGTCTaGCAAGCTCTGTGGCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: LSGRAFGLLGMTAWQARRLPLVV*QALWLV Trigger: TACAAGCCACAGAGCTTGCCAGACCACAAGTGGGAG...CCTCCGGGCTTGCCAGGCTGTCATGCCAAGCAAGCCAAACGCTCTGCCACTGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | GAGGATGACTTGGCTCATTATCAGGTAGGTCATCAGAGAAGAGAGGGAAGTTCCGCCAGGGCCACTGCCTaGGCCGCAGCCACTAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: EDDLAHYQVGHQRREGSSARATA*AAATSS Trigger: GCTGCTAGTGGCTGCGGCCCAGGCAGTGGCCCTGGC...GGAACTTCCCTCTCTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | AGGCAGAGGGGGTTGAGCTCGCCAGACCTCTCTGACCTGCTCCCACAGGCAAGACACGATCCCATTTTCTaGCCAGTACAGGAAAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: RQRGLSSPDLSDLLPQARHDPIF*PVQESG Trigger: GCCACTTTCCTGTACTGGCCAGAAAATGGGATCGTG...TCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAACCCCCTCTGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | TGGAAGGAAGGGAAGCTACTTTATTGCAGGGATGGTAAGCAGCGCCCCAGGCAGCCCTCCAGTGGATCCTaGGTCCAGCTCAGGTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: WKEGKLLYCRDGKQRPRQPSSGS*VQLRSP Trigger: AGGAGACCTGAGCTGGACCCAGGATCCACTGGAGGG...CTGCCTGGGGCGCTGCTTACCATCCCTGCAATAAAGTAGCTTCCCTTCCTTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | AAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCCTCATGCTAGGAGCTCGCTGTGAACTGCGGTaGGAAGTCGGCGTAGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: KRALHNLPDRPNGLMLGARCELR*EVGVAE Trigger: TTCAGCTACGCCGACTTCGCACCGCAGTTCACAGCG...AGCTCCTAGCATGAGGCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | ACCTCTCTGACCTGCTCCCACAGGCAAGAGGATGACTTGGCTCATTATCAGGTAGAGGACGCCCTCCAGTaGATCCTGGGTCCAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: TSLTCSHRQEDDLAHYQVEDALQ*ILGPAQ Trigger: CTGAGCTGGACCCAGGATCCACTGGAGGGCGTCCTC...TACCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | AAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCCTCATGCTAGGAGCTGGTAGGTGGCAACTGTaGCAGAGAGATGAGGACGCC | + |
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Preference number: 4 (lower is better) Translates to: KRALHNLPDRPNGLMLGAGRWQL*QRDEDA Trigger: GGCGTCCTCATCTCTCTGCCACAGTTGCCACCTACC...AGCTCCTAGCATGAGGCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR TCA 90 bp | AAGGGAAGCTACTTTATTGCAGGGATGGTAAGCAGCGCCCCAGGCAGTCTGTCCGGTAGTTTTCTGTCATaGAGCGCTGGTAGGCCGGCA | + |
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Preference number: 4 (lower is better) Translates to: KGSYFIAGMVSSAPGSLSGSFLS*SAGRPA Trigger: TGCCGGCCTACCAGCGCTTCATGACAGAAAACTACC...GGACAGACTGCCTGGGGCGCTGCTTACCATCCCTGCAATAAAGTAGCTTCCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | ACCTCTCTGACCTGCTCCCACAGGCAAGAGGATGACTTGGCTCATTATCAGGTAACCAGAACCATTCACTaGCCCAGGCGGGCACCGAGA | + |
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Preference number: 4 (lower is better) Translates to: TSLTCSHRQEDDLAHYQVTRTIH*PRRAPR Trigger: TCTCGGTGCCCGCCTGGGGCAGTGAATGGTTCTGGT...TACCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | ACCTCTCTGACCTGCTCCCACAGGCAAGAGGATGACTTGGCTCATTATCAGGTAGGCATCCGATCGCCCTaGCAGTGCCACCAGAACCAT | + |
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Preference number: 4 (lower is better) Translates to: TSLTCSHRQEDDLAHYQVGIRSP*QCHQNH Trigger: ATGGTTCTGGTGGCACTGGCAGGGCGATCGGATGCC...TACCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | AAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCCTCATGCTAGGAGCTTCGATAGCCCCAGGATaGTCTGTCCATGCTGGTGCA | + |
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Preference number: 4 (lower is better) Translates to: KRALHNLPDRPNGLMLGASIAPG*SVHAGA Trigger: TGCACCAGCATGGACAGAGCATCCTGGGGCTATCGA...AGCTCCTAGCATGAGGCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | ATCTCTGCGGGACTGGTACCAACCAATAAGGCAGAGGGGGTTGAGCTCGCCAGACCAAGACACAGGGCTTaGCCAGTTTGTGAAGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: ISAGLVPTNKAEGVELARPRHRA*PVCEAF Trigger: GAAGGCTTCACAAACTGGCCAAGCCCTGTGTCTTGG...TCTGGCGAGCTCAACCCCCTCTGCCTTATTGGTTGGTACCAGTCCCGCAGAGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | CTCAGTGGCAGAGCGTTTGGCTTGCTTGGCATGACAGCCTGGCAAGCCCGGAGGGTCTGGCAAGCTCTGTaGCTTGTATTTGTCTTGACA | + |
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Preference number: 4 (lower is better) Translates to: LSGRAFGLLGMTAWQARRVWQAL*LVFVLT Trigger: TGTCAAGACAAATACAAGCCACAGAGCTTGCCAGAC...CCTCCGGGCTTGCCAGGCTGTCATGCCAAGCAAGCCAAACGCTCTGCCACTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | TGGAAGGAAGGGAAGCTACTTTATTGCAGGGATGGTAAGCAGCGCCCCAGGCAGCTCTGTCCATGCTGGTaGACATCTCCCACTTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: WKEGKLLYCRDGKQRPRQLCPCW*TSPTCG Trigger: ACCACAAGTGGGAGATGTGCACCAGCATGGACAGAG...CTGCCTGGGGCGCTGCTTACCATCCCTGCAATAAAGTAGCTTCCCTTCCTTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR TCA 90 bp | AAGGGAAGCTACTTTATTGCAGGGATGGTAAGCAGCGCCCCAGGCAGTCTGTCCCTATCACCTCATCCTTaGCAGGGCTATCGTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: KGSYFIAGMVSSAPGSLSLSPHP*QGYRCR Trigger: TCTACAACGATAGCCCTGTCAAGGATGAGGTGATAG...GGACAGACTGCCTGGGGCGCTGCTTACCATCCCTGCAATAAAGTAGCTTCCCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR TCA 90 bp | GACCATCCCGTGAGAAAGCGAGCCCTTCACAATCTCCCTGACAGGCCAAATGGCGAACCAATTCCTCGATaGTTTCATTTTCCTTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: DHPVRKRALHNLPDRPNGEPIPR*FHFPWR Trigger: TCGCCAAGGAAAATGAAATCATCGAGGAATTGGTTC...GCCATTTGGCCTGTCAGGGAGATTGTGAAGGGCTCGCTTTCTCACGGGATGGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | GGAAGGAAGGGAAGCTACTTTATTGCAGGGATGGTAAGCAGCGCCCCAGGCAGTGCCAGTACAGGAAAGTaGCGTAAACAGTTGCGTTTT | + |
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Preference number: 4 (lower is better) Translates to: GRKGSYFIAGMVSSAPGSASTGK*RKQLRF Trigger: AAAACGCAACTGTTTACGCCACTTTCCTGTACTGGC...ACTGCCTGGGGCGCTGCTTACCATCCCTGCAATAAAGTAGCTTCCCTTCCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| 3UTR CAA 72 bp | ACCTCTCTGACCTGCTCCCACAGGCAAGAGGATGACTaGGCTCATTATCAGGTAGGTCATCAGAGAAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: TSLTCSHRQEDD*AHYQVGHQRRE Trigger: CTCTCTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTCTTGCCTGTGGGAGCAGGTCAGAGAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | GAGGATGACTTGGCTCATTATCAGGTAGGTCATCAGAGAAGAGAGGGAAGTTCCAGGATGCTCTGTCCATaGTGGTGCACATCTCCCACT | + |
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Preference number: 4 (lower is better) Translates to: EDDLAHYQVGHQRREGSSRMLCP*WCTSPT Trigger: AGTGGGAGATGTGCACCAGCATGGACAGAGCATCCT...GGAACTTCCCTCTCTTCTCTGATGACCTACCTGATAATGAGCCAAGTCATCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | ATGGGTGACTCAGCTGAGCTGGCCAGGTCTCTCTGCCCACCAGAAATGCTAGCAAGTGGCGTAAACAGTTaGGTTTTTAGTAGTGTACCA | + |
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Preference number: 4 (lower is better) Translates to: MGDSAELARSLCPPEMLASGVNS*VFSSVP Trigger: TGGTACACTACTAAAAACGCAACTGTTTACGCCACT...TGCTAGCATTTCTGGTGGGCAGAGAGACCTGGCCAGCTCAGCTGAGTCACCCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | CACCTCAGCATAATAAATGGAGACCTTGATAGGTACAATCTACTTGGTCATCTGCGAACACCCCGAACTTaGCCTCATCGAACCAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: HLSIINGDLDRYNLLGHLRTPRT*PHRTSS Trigger: CGAGCTGGTTCGATGAGGCCAAGTTCGGGGTGTTCG...CAGATGACCAAGTAGATTGTACCTATCAAGGTCTCCATTTATTATGCTGAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CCA 90 bp | CACCTCAGCATAATAAATGGAGACCTTGATAGGTACAATCTACTTGGTCATCTGGCCAAGCAAGGAAGCTaGTGGAGTTCCAGTACGTGT | + |
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Preference number: 4 (lower is better) Translates to: HLSIINGDLDRYNLLGHLAKQGS*WSSSTC Trigger: ACACGTACTGGAACTCCACCAGCTTCCTTGCTTGGC...CAGATGACCAAGTAGATTGTACCTATCAAGGTCTCCATTTATTATGCTGAGGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR GCA 90 bp | CACCTCAGCATAATAAATGGAGACCTTGATAGGTACAATCTACTTGGTCATCTGTTGTTCTTTTCCGACTaGACCCTCCAGGGTTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: HLSIINGDLDRYNLLGHLLFFSD*TLQGLE Trigger: CTCCAAACCCTGGAGGGTGCAGTCGGAAAAGAACAA...CAGATGACCAAGTAGATTGTACCTATCAAGGTCTCCATTTATTATGCTGAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS TCA 90 bp | ACCAGCTCGGCAGTGGCCGCGAGTCCAAGCTCTGCCAGTCCGGAGTaGAGCGGCGCGGAGCCAGGGCCACTGCCTGGGCCGCAGCCACTA | + |
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Preference number: 5 (lower is better) Translates to: TSSAVAASPSSASPE*SGAEPGPLPGPQPL Trigger: TAGTGGCTGCGGCCCAGGCAGTGGCCCTGGCTCCGCGCCGCTTCACTCCGGACTGGCAGAGCTTGGACTCGCGGCCACTGCCGAGCTGGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS GCA 90 bp | TTGGCCTCATCGAACCAGCTCGGCAGTGGCCGCGAGTCCAAGCTCTaGCAGTCCGGAGTGAAGCGGCGCGGAGCCAGGGCCACTGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LASSNQLGSGRESKL*QSGVKRRGARATAW Trigger: CCAGGCAGTGGCCCTGGCTCCGCGCCGCTTCACTCCGGACTGGCAGAGCTTGGACTCGCGGCCACTGCCGAGCTGGTTCGATGAGGCCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS CCA 90 bp | CAGAGTCCACGCAAACTCCACCGGCAGAACGGTAGGTGGCAACTGTaGCAGAGAGATGAGGACGCCCTCCAGTGGATCCTGGGTCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: QSPRKLHRQNGRWQL*QRDEDALQWILGPA Trigger: AGCTGGACCCAGGATCCACTGGAGGGCGTCCTCATCTCTCTGCCACAGTTGCCACCTACCGTTCTGCCGGTGGAGTTTGCGTGGACTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CAA 90 bp | AGGCAGAGGGGGTTGAGCTCGCCAGACCTCTCTGACCTGCTCCCACAGGCAAGAACGAACACCCCGAACTaGGCCTCATCGAACCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: RQRGLSSPDLSDLLPQARTNTPN*ASSNQL Trigger: GAGCTGGTTCGATGAGGCCAAGTTCGGGGTGTTCGT...TCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAACCCCCTCTGCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CAA 90 bp | ATGGGTGACTCAGCTGAGCTGGCCAGGTCTCTCTGCCCACCAGAAATGCTAGCAGTGCACATCTCCCACTaGTGGTCTGGCAAGCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: MGDSAELARSLCPPEMLAVHISH*WSGKLC Trigger: ACAGAGCTTGCCAGACCACAAGTGGGAGATGTGCAC...TGCTAGCATTTCTGGTGGGCAGAGAGACCTGGCCAGCTCAGCTGAGTCACCCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CAA 90 bp | GACGTGCTCAGTGGCAGAGCGTTTGGCTTGCTTGGCATGACAGCCTGGCAAGCCAGCAAGAAGCCTTTCTaGGAAGATGGGGACGATCAG | + |
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Preference number: 5 (lower is better) Translates to: DVLSGRAFGLLGMTAWQASKKPF*EDGDDQ Trigger: CTGATCGTCCCCATCTTCCAAGAAAGGCTTCTTGCT...GGCTTGCCAGGCTGTCATGCCAAGCAAGCCAAACGCTCTGCCACTGAGCACGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CAA 90 bp | AGGCAGAGGGGGTTGAGCTCGCCAGACCTCTCTGACCTGCTCCCACAGGCAAGATGGCTTGTATTTGTCTaGACAGTTGTAGTACCCTCC | + |
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Preference number: 5 (lower is better) Translates to: RQRGLSSPDLSDLLPQARWLVFV*TVVVPS Trigger: GGAGGGTACTACAACTGTCAAGACAAATACAAGCCA...TCTTGCCTGTGGGAGCAGGTCAGAGAGGTCTGGCGAGCTCAACCCCCTCTGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS TCA 90 bp | CGTCCTTCGAGTTCCAGTTCCAAGACACAGGGCTTGGCCAGTTTGTaGAGCCTTCATGATGCTTTGTGGTCAGGACGACGTACTTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: RPSSSSSKTQGLASL*SLHDALWSGRRTWP Trigger: GGGCCAAGTACGTCGTCCTGACCACAAAGCATCATGAAGGCTTCACAAACTGGCCAAGCCCTGTGTCTTGGAACTGGAACTCGAAGGACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS-3UTR CAA 90 bp | CACCTCAGCATAATAAATGGAGACCTTGATAGGTACAATCTACTTGGTCATCTGGTCGTTTTGGGGGATTaGAGGTTCACGATCCCATTT | + |
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Preference number: 5 (lower is better) Translates to: HLSIINGDLDRYNLLGHLVVLGD*RFTIPF Trigger: AAATGGGATCGTGAACCTCAAATCCCCCAAAACGAC...CAGATGACCAAGTAGATTGTACCTATCAAGGTCTCCATTTATTATGCTGAGGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS GCA 72 bp | TCGAACCAGCTCGGCAGTGGCCGCGAGTCCAAGCTCTaGCAGTCCGGAGTGAAGCGGCGCGGAGCCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SNQLGSGRESKL*QSGVKRRGARA Trigger: GGCCCTGGCTCCGCGCCGCTTCACTCCGGACTGGCAGAGCTTGGACTCGCGGCCACTGCCGAGCTGGTTCGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS CCA 72 bp | CACCCCGAACTTGGCCTCATCGAACCAGCTCGGCAGTaGCCGCGAGTCCAAGCTCTGCCAGTCCGGAGTGAA | + |
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Preference number: 6 (lower is better) Translates to: HPELGLIEPARQ*PRVQALPVRSE Trigger: TTCACTCCGGACTGGCAGAGCTTGGACTCGCGGCCACTGCCGAGCTGGTTCGATGAGGCCAAGTTCGGGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS GCA 72 bp | GTAGAGGCCGTAGCGTATGTTCCTCTTCCGCACAGCTaGTCCCAACTCACCGACCAAATCACGGTGGGGCCC | + |
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Preference number: 6 (lower is better) Translates to: VEAVAYVPLPHS*SQLTDQITVGP Trigger: GGGCCCCACCGTGATTTGGTCGGTGAGTTGGGAGCAGCTGTGCGGAAGAGGAACATACGCTACGGCCTCTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS CCA 72 bp | CAGAGTCCACGCAAACTCCACCGGCAGAACGGTAGGTaGCAACTGTGGCAGAGAGATGAGGACGCCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: QSPRKLHRQNGR*QLWQRDEDALQ Trigger: CTGGAGGGCGTCCTCATCTCTCTGCCACAGTTGCCACCTACCGTTCTGCCGGTGGAGTTTGCGTGGACTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS TCA 72 bp | CAAGACACAGGGCTTGGCCAGTTTGTGAAGCCTTCATaGTGCTTTGTGGTCAGGACGACGTACTTGGCCCCG | + |
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Preference number: 6 (lower is better) Translates to: QDTGLGQFVKPS*CFVVRTTYLAP Trigger: CGGGGCCAAGTACGTCGTCCTGACCACAAAGCATCATGAAGGCTTCACAAACTGGCCAAGCCCTGTGTCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS GCA 72 bp | GGTCGACATGGTCATGTCTTTTCGATAGCCCCAGGATaGTCTGTCCATGCTGGTGCACATCTCCCACTTGTG | + |
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Preference number: 6 (lower is better) Translates to: GRHGHVFSIAPG*SVHAGAHLPLV Trigger: CACAAGTGGGAGATGTGCACCAGCATGGACAGAGCATCCTGGGGCTATCGAAAAGACATGACCATGTCGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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| CDS TCA 72 bp | TGCCTCCCAAACTTACCGTCTGAACCAATTCCTCGATaGTTTCATTTTCCTTGGCGATGGTCGACATGGTCA | + |
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Preference number: 6 (lower is better) Translates to: CLPNLPSEPIPR*FHFPWRWSTWS Trigger: TGACCATGTCGACCATCGCCAAGGAAAATGAAATCATCGAGGAATTGGTTCAGACGGTAAGTTTGGGAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030434.5 |
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