Pregenerated sensors for FTMT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024510Ensembl transcript IDs: ENSMUST00000025388.7
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CTGAGCTGCTCAACACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTGACTTAAGGCAGTACAGATaGTTGAATTGGAAGTCATGG | + |
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Preference number: 2 (lower is better) Translates to: LSCSTPPLIPDVALTKFDLRQYR*LNWKSW Trigger: CCATGACTTCCAATTCAACCATCTGTACTGCCTTAA...GTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGTGTTGAGCAGCTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CCA 90 bp | TTAAGAGTCTTCTCTGAGCCCTTAAAATGTGAGCCTACTGAGCTGCTCAACACCGGCTATCTTTCAGGCTaGGGAAATAATTGGTATTTT | + |
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Preference number: 2 (lower is better) Translates to: LRVFSEPLKCEPTELLNTGYLSG*GNNWYF Trigger: AAAATACCAATTATTTCCCCAGCCTGAAAGATAGCC...GGTGTTGAGCAGCTCAGTAGGCTCACATTTTAAGGGCTCAGAGAAGACTCTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CCA 90 bp | TTAAGAGTCTTCTCTGAGCCCTTAAAATGTGAGCCTACTGAGCTGCTCAACACCTACAGATGGTTGAATTaGAAGTCATGGAATTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: LRVFSEPLKCEPTELLNTYRWLN*KSWNFS Trigger: ACTGAAATTCCATGACTTCCAATTCAACCATCTGTA...GGTGTTGAGCAGCTCAGTAGGCTCACATTTTAAGGGCTCAGAGAAGACTCTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR CAA 90 bp | CCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATaGGAAGTCATGGAATTTCAGTTCAGGTTTATGGATAGGAACAGC | + |
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Preference number: 2 (lower is better) Translates to: PTILYMIFKAVQMVE*EVMEFQFRFMDRNS Trigger: GCTGTTCCTATCCATAAACCTGAACTGAAATTCCATGACTTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CCA 90 bp | TCACCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATTGGAAAAAGAAGGAGGAGAATaGAAAGACGGTGTCAAGTTT | + |
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Preference number: 2 (lower is better) Translates to: SPTILYMIFKAVQMVELEKEGGE*KDGVKF Trigger: AAACTTGACACCGTCTTTCCATTCTCCTCCTTCTTT...TTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGGTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CCA 90 bp | TCACCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATTGGAAGGCTGGGGAAATAATTaGTATTTTGGTGTTGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: SPTILYMIFKAVQMVELEGWGNN*YFGVGR Trigger: TCTACCAACACCAAAATACCAATTATTTCCCCAGCC...TTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGGTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CAA 90 bp | CTGAGCTGCTCAACACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTGACATTGGTATTTTGGTGTaGGTAGAAAGCCGTAGTGAG | + |
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Preference number: 3 (lower is better) Translates to: LSCSTPPLIPDVALTKFDIGILV*VESRSE Trigger: CTCACTACGGCTTTCTACCAACACCAAAATACCAAT...GTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGTGTTGAGCAGCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CAA 90 bp | CTGAGCTGCTCAACACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTGACGTACAGATGGTTGAATaGGAAGTCATGGAATTTCAG | + |
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Preference number: 3 (lower is better) Translates to: LSCSTPPLIPDVALTKFDVQMVE*EVMEFQ Trigger: CTGAAATTCCATGACTTCCAATTCAACCATCTGTAC...GTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGTGTTGAGCAGCTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CAA 90 bp | TCACCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATTGGAAAACTCCATCCAGGTCTaGGGACCCACTGGGGTATCA | + |
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Preference number: 3 (lower is better) Translates to: SPTILYMIFKAVQMVELENSIQV*GPTGVS Trigger: TGATACCCCAGTGGGTCCCAAGACCTGGATGGAGTT...TTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CAA 90 bp | TTAAGAGTCTTCTCTGAGCCCTTAAAATGTGAGCCTACTGAGCTGCTCAACACCTCTAATTTAAGTGTTTaGTCTCCCATCCCTGTCATA | + |
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Preference number: 3 (lower is better) Translates to: LRVFSEPLKCEPTELLNTSNLSV*SPIPVI Trigger: TATGACAGGGATGGGAGACAAAACACTTAAATTAGA...GGTGTTGAGCAGCTCAGTAGGCTCACATTTTAAGGGCTCAGAGAAGACTCTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR TCA 72 bp | ACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTaGCATGAATCCTTTAAAACAATACCTAGGTTGTCT | + |
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Preference number: 3 (lower is better) Translates to: TTTDTRCGSYQV*HESFKTIPRLS Trigger: AGACAACCTAGGTATTGTTTTAAAGGATTCATGTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR CCA 72 bp | CTGTCATACCATAGTATTCTGGGCTATCTTTCAGGCTaGGGAAATAATTGGTATTTTGGTGTTGGTAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: LSYHSILGYLSG*GNNWYFGVGRK Trigger: CTTTCTACCAACACCAAAATACCAATTATTTCCCCAGCCTGAAAGATAGCCCAGAATACTATGGTATGACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR CCA 72 bp | TTTTTAAGGCAGTACAGATGGTTGAATTGGAAGTCATaGAATTTCAGTTCAGGTTTATGGATAGGAACAGCA | + |
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Preference number: 3 (lower is better) Translates to: FLRQYRWLNWKS*NFSSGLWIGTA Trigger: TGCTGTTCCTATCCATAAACCTGAACTGAAATTCCATGACTTCCAATTCAACCATCTGTACTGCCTTAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| 3UTR-3UTR CAA 90 bp | AAGTTTGACATGAATCCTTTAAAACAATACCTAGGTTGTCTCCATACACTGCCACTCTCACCGACCATTTaGTATATGATTTTTAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: KFDMNPLKQYLGCLHTLPLSPTI*YMIFKA Trigger: TGCCTTAAAAATCATATACAAAATGGTCGGTGAGAG...TGGCAGTGTATGGAGACAACCTAGGTATTGTTTTAAAGGATTCATGTCAAACTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CCA 90 bp | CTGAGCTGCTCAACACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTGACAGGCCACATCATCCCTaGAGAAGTAGTAAGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: LSCSTPPLIPDVALTKFDRPHHP*RSSKPW Trigger: CCATGGCTTACTACTTCTCCAGGGATGATGTGGCCT...GTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGTGTTGAGCAGCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CCA 90 bp | TTAAGAGTCTTCTCTGAGCCCTTAAAATGTGAGCCTACTGAGCTGCTCAACACCGACCTAAAGGATACCTaGAGGCCAAGCACTGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: LRVFSEPLKCEPTELLNTDLKDT*RPSTVG Trigger: CCCCACAGTGCTTGGCCTCCAGGTATCCTTTAGGTC...GGTGTTGAGCAGCTCAGTAGGCTCACATTTTAAGGGCTCAGAGAAGACTCTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR TCA 90 bp | AAGTTTGACATGAATCCTTTAAAACAATACCTAGGTTGTCTCCATACACTGCCAGCCTCCGAGTCCGGGTaGAAGTTCTGGCGGACCCTG | + |
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Preference number: 4 (lower is better) Translates to: KFDMNPLKQYLGCLHTLPASESG*KFWRTL Trigger: CAGGGTCCGCCAGAACTTTCACCCGGACTCGGAGGC...TGGCAGTGTATGGAGACAACCTAGGTATTGTTTTAAAGGATTCATGTCAAACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR GCA 90 bp | CTGAGCTGCTCAACACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTGACAGTGCAGAGCTGATGTaGTTGGAGAAGAACCAAAAG | + |
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Preference number: 4 (lower is better) Translates to: LSCSTPPLIPDVALTKFDSAELM*LEKNQK Trigger: CTTTTGGTTCTTCTCCAAGCACATCAGCTCTGCACT...GTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGTGTTGAGCAGCTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CCA 90 bp | TTAAGAGTCTTCTCTGAGCCCTTAAAATGTGAGCCTACTGAGCTGCTCAACACCATCCGGCCTCCTCGCTaGTTCTGCAGTTTCATTAGC | + |
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Preference number: 4 (lower is better) Translates to: LRVFSEPLKCEPTELLNTIRPPR*FCSFIS Trigger: GCTAATGAAACTGCAGAACCAGCGAGGAGGCCGGAT...GGTGTTGAGCAGCTCAGTAGGCTCACATTTTAAGGGCTCAGAGAAGACTCTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR TCA 90 bp | TTAAGAGTCTTCTCTGAGCCCTTAAAATGTGAGCCTACTGAGCTGCTCAACACCACATCAGTGCAGAGCTaGTGTGCTTGGAGAAGAACC | + |
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Preference number: 4 (lower is better) Translates to: LRVFSEPLKCEPTELLNTTSVQS*CAWRRT Trigger: GGTTCTTCTCCAAGCACATCAGCTCTGCACTGATGT...GGTGTTGAGCAGCTCAGTAGGCTCACATTTTAAGGGCTCAGAGAAGACTCTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CCA 90 bp | CTGAGCTGCTCAACACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTGACGGCGAAGGAAATACTTaGAGAAGTTATACAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LSCSTPPLIPDVALTKFDGEGNT*RSYTRP Trigger: TGGCCTTGTATAACTTCTCCAAGTATTTCCTTCGCC...GTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGTGTTGAGCAGCTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CCA 90 bp | TTAAGAGTCTTCTCTGAGCCCTTAAAATGTGAGCCTACTGAGCTGCTCAACACCCTCTCTTCCAGGGACTaGCGAAGGAAATACTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LRVFSEPLKCEPTELLNTLSSRD*RRKYLE Trigger: CTCCAAGTATTTCCTTCGCCAGTCCCTGGAAGAGAG...GGTGTTGAGCAGCTCAGTAGGCTCACATTTTAAGGGCTCAGAGAAGACTCTTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CCA 90 bp | AAGTTTGACATGAATCCTTTAAAACAATACCTAGGTTGTCTCCATACACTGCCAGGCTTCTTGATGTCCTaGAGGCAGATCCGGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KFDMNPLKQYLGCLHTLPGFLMS*RQIRPP Trigger: AGGAGGCCGGATCTGCCTCCAGGACATCAAGAAGCC...TGGCAGTGTATGGAGACAACCTAGGTATTGTTTTAAAGGATTCATGTCAAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR GCA 90 bp | TCACCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATTGGAAGGGCAGGGACATCAGTaGAGAGCTGATGTGCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: SPTILYMIFKAVQMVELEGQGHQ*RADVLG Trigger: TCCAAGCACATCAGCTCTGCACTGATGTCCCTGCCC...TTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGGTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR GCA 90 bp | TCACCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATTGGAACCTCCTCGCTGGTTCTaGAGTTTCATTAGCTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: SPTILYMIFKAVQMVELEPPRWF*SFISFS Trigger: AGAGAAGCTAATGAAACTGCAGAACCAGCGAGGAGG...TTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR GCA 90 bp | AAGTTTGACATGAATCCTTTAAAACAATACCTAGGTTGTCTCCATACACTGCCAATGGTGACTAAGTTGTaGACGTGGTCACCTAATTCT | + |
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Preference number: 4 (lower is better) Translates to: KFDMNPLKQYLGCLHTLPMVTKL*TWSPNS Trigger: AGAATTAGGTGACCACGTGCACAACTTAGTCACCAT...TGGCAGTGTATGGAGACAACCTAGGTATTGTTTTAAAGGATTCATGTCAAACTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR TCA 90 bp | AAGTTTGACATGAATCCTTTAAAACAATACCTAGGTTGTCTCCATACACTGCCAAGAAAGTCACACAAATaGGGATCTCCTTTTTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: KFDMNPLKQYLGCLHTLPRKSHK*GSPFSE Trigger: CTCAGAAAAAGGAGATCCTCATTTGTGTGACTTTCT...TGGCAGTGTATGGAGACAACCTAGGTATTGTTTTAAAGGATTCATGTCAAACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CAA 90 bp | CTGAGCTGCTCAACACCACCACTGATACCCGATGTGGCTCTTACCAAGTTTGACTGGCGAAGGAAATACTaGGAGAAGTTATACAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: LSCSTPPLIPDVALTKFDWRRKY*EKLYKA Trigger: GGCCTTGTATAACTTCTCCAAGTATTTCCTTCGCCA...GTCAAACTTGGTAAGAGCCACATCGGGTATCAGTGGTGGTGTTGAGCAGCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CAA 90 bp | TCACCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATTGGAAGCAGAGCTGATGTGCTaGGAGAAGAACCAAAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: SPTILYMIFKAVQMVELEAELMC*EKNQKQ Trigger: CTGCTTTTGGTTCTTCTCCAAGCACATCAGCTCTGC...TTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS-3UTR CAA 90 bp | TCACCGACCATTTTGTATATGATTTTTAAGGCAGTACAGATGGTTGAATTGGAACCCATGGTGACTAAGTaGTGCACGTGGTCACCTAAT | + |
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Preference number: 5 (lower is better) Translates to: SPTILYMIFKAVQMVELEPMVTK*CTWSPN Trigger: ATTAGGTGACCACGTGCACAACTTAGTCACCATGGG...TTCCAATTCAACCATCTGTACTGCCTTAAAAATCATATACAAAATGGTCGGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS TCA 72 bp | CTAAAGGATACCTGGAGGCCAAGCACTGTGGGGCAGTaGATCTGTGTAACACACGGGGCAGGGACATCAGTG | + |
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Preference number: 6 (lower is better) Translates to: LKDTWRPSTVGQ*ICVTHGAGTSV Trigger: CACTGATGTCCCTGCCCCGTGTGTTACACAGATTCACTGCCCCACAGTGCTTGGCCTCCAGGTATCCTTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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| CDS CCA 72 bp | TTTTCTGAGGCCAGAGTATGTAAGTCCAGCAGCGACTaGTTTACATTCTTTTCCAGGAGCAGGGCACATTCC | + |
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Preference number: 6 (lower is better) Translates to: FSEARVCKSSSD*FTFFSRSRAHS Trigger: GGAATGTGCCCTGCTCCTGGAAAAGAATGTAAACCAGTCGCTGCTGGACTTACATACTCTGGCCTCAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025388.7 |
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