Pregenerated sensors for FTL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050708Ensembl transcript IDs: ENSMUST00000094434.13, ENSMUST00000210106.2
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGTCTGCGCTGGTTGTGGCCCCGCCACCCTGCGGAGGTTGGTCAGATGGTTGCCCCATTCATCTTGAGATaGCTTCTGCACACAAGAATA | + |
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Preference number: 2 (lower is better) Translates to: SLRWLWPRHPAEVGQMVAPFILR*LLHTRI Trigger: TATTCTTGTGTGCAGAAGCCATCTCAAGATGAATGG...GGCAACCATCTGACCAACCTCCGCAGGGTGGCGGGGCCACAACCAGCGCAGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000210106.2 |
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| 3UTR-3UTR CCA 90 bp | TATTTTTACTTGGTCCAAGACTTGACAGAGGCTCCAGGGCGGTTACAAAGCTGCAGAGGTTCATTCAGGTaGAGGTCCCAGGGCGGGCTG | + |
|
Preference number: 2 (lower is better) Translates to: YFYLVQDLTEAPGRLQSCRGSFR*RSQGGL Trigger: CAGCCCGCCCTGGGACCTCCACCTGAATGAACCTCT...GCAGCTTTGTAACCGCCCTGGAGCCTCTGTCAAGTCTTGGACCAAGTAAAAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094434.13 ENSMUST00000210106.2 |
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| 3UTR-3UTR TCA 90 bp | TATTTTTACTTGGTCCAAGACTTGACAGAGGCTCCAGGGCGGTTACAAAGCTGCTTACCCCATTCATCTTaGGATGGCTTCTGCACACAA | + |
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Preference number: 2 (lower is better) Translates to: YFYLVQDLTEAPGRLQSCLPHSS*DGFCTQ Trigger: TTGTGTGCAGAAGCCATCTCAAGATGAATGGGGTAA...GCAGCTTTGTAACCGCCCTGGAGCCTCTGTCAAGTCTTGGACCAAGTAAAAATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000210106.2 |
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| 3UTR-3UTR CAA 90 bp | CGCCAGTCTGCGCTGGTTGTGGCCCCGCCACCCTGCGGAGGTTGGTCAGATGGTTACTTGGTCCAAGACTaGACAGAGGCTCCAGGGCGG | + |
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Preference number: 3 (lower is better) Translates to: RQSALVVAPPPCGGWSDGYLVQD*TEAPGR Trigger: CCGCCCTGGAGCCTCTGTCAAGTCTTGGACCAAGTA...ACCATCTGACCAACCTCCGCAGGGTGGCGGGGCCACAACCAGCGCAGACTGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210106.2 |
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| CDS-3UTR CCA 90 bp | AAGCTGCCTAGTGGCTTGAGAGGTTCATTCAGGTGGAGGTCCCAGGGCGGGCTGAGTCTGCGCTGGTTGTaGCCCCGCCACCCTGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: KLPSGLRGSFRWRSQGGLSLRWL*PRHPAE Trigger: CTCCGCAGGGTGGCGGGGCCACAACCAGCGCAGACT...CAGCCCGCCCTGGGACCTCCACCTGAATGAACCTCTCAAGCCACTAGGCAGCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094434.13 |
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| CDS-3UTR TCA 90 bp | CTGCCTAGTGGCTTGAGAGGTTCATTCAGGTGGAGGTCCCAGGGCGGGCTGGTGTTACCCCATTCATCTTaGGATGGCTTCTGCACATCC | + |
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Preference number: 4 (lower is better) Translates to: LPSGLRGSFRWRSQGGLVLPHSS*DGFCTS Trigger: GGATGTGCAGAAGCCATCTCAAGATGAATGGGGTAA...CACCAGCCCGCCCTGGGACCTCCACCTGAATGAACCTCTCAAGCCACTAGGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094434.13 |
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