Pregenerated sensors for FTHL17F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072249Ensembl transcript IDs: ENSMUST00000097029.4
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATAAATATCAGGTGTAATGACCAGAGAAAGACCCCACGACAGTGGAGACATACCTGTCCTGAAGGGAGATaGAGCCTCCACGCTTATTCT | + |
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Preference number: 4 (lower is better) Translates to: INIRCNDQRKTPRQWRHTCPEGR*SLHAYS Trigger: AGAATAAGCGTGGAGGCTGCATCTCCCTTCAGGACA...GGTATGTCTCCACTGTCGTGGGGTCTTTCTCTGGTCATTACACCTGATATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR GCA 90 bp | AACATAAATATCAGGTGTAATGACCAGAGAAAGACCCCACGACAGTGGAGACATGTGCATGAACATCTCTaGACTGGTCTGGCAGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: NINIRCNDQRKTPRQWRHVHEHL*TGLAVV Trigger: CACAACTGCCAGACCAGTGCAGAGATGTTCATGCAC...ATGTCTCCACTGTCGTGGGGTCTTTCTCTGGTCATTACACCTGATATTTATGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR CCA 90 bp | ATAAATATCAGGTGTAATGACCAGAGAAAGACCCCACGACAGTGGAGACATACCGATTGGAGGTACAGCTaGATGTGTGTGTTGACAGCA | + |
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Preference number: 4 (lower is better) Translates to: INIRCNDQRKTPRQWRHTDWRYS*MCVLTA Trigger: TGCTGTCAACACACACATCCAGCTGTACCTCCAATC...GGTATGTCTCCACTGTCGTGGGGTCTTTCTCTGGTCATTACACCTGATATTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR CCA 90 bp | ATAAATATCAGGTGTAATGACCAGAGAAAGACCCCACGACAGTGGAGACATACCATCAGCATCTCCATGTaGAAGGCACATTCCATCGCT | + |
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Preference number: 4 (lower is better) Translates to: INIRCNDQRKTPRQWRHTISISM*KAHSIA Trigger: AGCGATGGAATGTGCCTTCCACATGGAGATGCTGAT...GGTATGTCTCCACTGTCGTGGGGTCTTTCTCTGGTCATTACACCTGATATTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR CCA 90 bp | GCAACAGTCCATCAGAAACCGAAAATGAGTGAACTTTGCTTCAAAACCAACATAAGGAAATGGCAGAGGTaGGGGTCGCCTTTCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: ATVHQKPKMSELCFKTNIRKWQR*GSPFSL Trigger: CAAGGAGAAAGGCGACCCCCACCTCTGCCATTTCCT...TATGTTGGTTTTGAAGCAAAGTTCACTCATTTTCGGTTTCTGATGGACTGTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR TCA 90 bp | GCAACAGTCCATCAGAAACCGAAAATGAGTGAACTTTGCTTCAAAACCAACATAGCACATTCCATCGCTTaGAATCCTCCGTGCCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: ATVHQKPKMSELCFKTNIAHSIA*NPPCQL Trigger: CAACTGGCACGGAGGATTTCAAGCGATGGAATGTGC...TATGTTGGTTTTGAAGCAAAGTTCACTCATTTTCGGTTTCTGATGGACTGTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR TCA 90 bp | TTGCTGCAAACAAACACTCAAATTTATTTAAAGCAACAGTCCATCAGAAACCGACGCTTGAAGTTCTCCTaGGCCACGTCATCACGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LLQTNTQIYLKQQSIRNRRLKFS*ATSSRS Trigger: TGACCGTGATGACGTGGCTCAGGAGAACTTCAAGCG...TCGGTTTCTGATGGACTGTTGCTTTAAATAAATTTGAGTGTTTGTTTGCAGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR GCA 90 bp | GCAACAGTCCATCAGAAACCGAAAATGAGTGAACTTTGCTTCAAAACCAACATACGCTTATTCTGCAGGTaGATGAACATCTCTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: ATVHQKPKMSELCFKTNIRLFCR*MNISAL Trigger: CAGTGCAGAGATGTTCATGCACCTGCAGAATAAGCG...TATGTTGGTTTTGAAGCAAAGTTCACTCATTTTCGGTTTCTGATGGACTGTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR CCA 90 bp | TTGCTGCAAACAAACACTCAAATTTATTTAAAGCAACAGTCCATCAGAAACCGACCAGTTGTTGCGTTCTaGTCTCGCGATGTCCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LLQTNTQIYLKQQSIRNRPVVAF*SRDVLK Trigger: CTTCAGGACATCGCGAGACCAGAACGCAACAACTGG...TCGGTTTCTGATGGACTGTTGCTTTAAATAAATTTGAGTGTTTGTTTGCAGCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS CCA 90 bp | GGCACATTCCATCGCTTGAAATCCTCCGTGCCAGTTGTTGCGTTCTaGTCTCGCGATGTCCTGAAGGGAGATGCAGCCTCCACGCTTATT | + |
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Preference number: 5 (lower is better) Translates to: GTFHRLKSSVPVVAF*SRDVLKGDAASTLI Trigger: AATAAGCGTGGAGGCTGCATCTCCCTTCAGGACATCGCGAGACCAGAACGCAACAACTGGCACGGAGGATTTCAAGCGATGGAATGTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS TCA 90 bp | ACATGTACTCATAGGAGGATTGGAGGTACAGCTGGATGTGTGTGTTaGCAGCATCCTCGCACTGCCAGTCATAGTTCTGCCGCACTCGAG | + |
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Preference number: 5 (lower is better) Translates to: TCTHRRIGGTAGCVC*QHPRTASHSSAALE Trigger: CTCGAGTGCGGCAGAACTATGACTGGCAGTGCGAGGATGCTGTCAACACACACATCCAGCTGTACCTCCAATCCTCCTATGAGTACATGT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS TCA 90 bp | ATTCTGCAGGTGCATGAACATCTCTGCACTGGTCTGGCAGTTGTGTaGCTTGGTCAAGAAGAAACGCTTGAAGTTCTCCTGAGCCACGTC | + |
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Preference number: 5 (lower is better) Translates to: ILQVHEHLCTGLAVV*LGQEETLEVLLSHV Trigger: GACGTGGCTCAGGAGAACTTCAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATGCACCTGCAGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS CCA 90 bp | CCTCCACGCTTATTCTGCAGGTGCATGAACATCTCTGCACTGGTCTaGCAGTTGTGTGACTTGGTCAAGAAGAAACGCTTGAAGTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: PPRLFCRCMNISALV*QLCDLVKKKRLKFS Trigger: GGAGAACTTCAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATGCACCTGCAGAATAAGCGTGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR CAA 90 bp | AACATAAATATCAGGTGTAATGACCAGAGAAAGACCCCACGACAGTGGAGACATGGCACATTCCATCGCTaGAAATCCTCCGTGCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: NINIRCNDQRKTPRQWRHGTFHR*KSSVPV Trigger: AACTGGCACGGAGGATTTCAAGCGATGGAATGTGCC...ATGTCTCCACTGTCGTGGGGTCTTTCTCTGGTCATTACACCTGATATTTATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS-3UTR CAA 90 bp | GCAACAGTCCATCAGAAACCGAAAATGAGTGAACTTTGCTTCAAAACCAACATAAGCTGGATGTGTGTGTaGACAGCATCCTCGCACTGC | + |
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Preference number: 5 (lower is better) Translates to: ATVHQKPKMSELCFKTNISWMCV*TASSHC Trigger: GCAGTGCGAGGATGCTGTCAACACACACATCCAGCT...TATGTTGGTTTTGAAGCAAAGTTCACTCATTTTCGGTTTCTGATGGACTGTTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS CCA 72 bp | CATCGCTTGAAATCCTCCGTGCCAGTTGTTGCGTTCTaGTCTCGCGATGTCCTGAAGGGAGATGCAGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: HRLKSSVPVVAF*SRDVLKGDAAS Trigger: GGAGGCTGCATCTCCCTTCAGGACATCGCGAGACCAGAACGCAACAACTGGCACGGAGGATTTCAAGCGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS GCA 72 bp | CACATTCCATCGCTTGAAATCCTCCGTGCCAGTTGTTaGGTTCTGGTCTCGCGATGTCCTGAAGGGAGATGC | + |
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Preference number: 6 (lower is better) Translates to: HIPSLEILRASC*VLVSRCPEGRC Trigger: GCATCTCCCTTCAGGACATCGCGAGACCAGAACGCAACAACTGGCACGGAGGATTTCAAGCGATGGAATGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS TCA 72 bp | CATAGGAGGATTGGAGGTACAGCTGGATGTGTGTGTTaGCAGCATCCTCGCACTGCCAGTCATAGTTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: HRRIGGTAGCVC*QHPRTASHSSA Trigger: GGCAGAACTATGACTGGCAGTGCGAGGATGCTGTCAACACACACATCCAGCTGTACCTCCAATCCTCCTATG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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| CDS CAA 72 bp | AAAGTAGAATGCCATCGACATGTACTCATAGGAGGATaGGAGGTACAGCTGGATGTGTGTGTTGACAGCATC | + |
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Preference number: 6 (lower is better) Translates to: KVECHRHVLIGG*EVQLDVCVDSI Trigger: GATGCTGTCAACACACACATCCAGCTGTACCTCCAATCCTCCTATGAGTACATGTCGATGGCATTCTACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097029.4 |
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