Pregenerated sensors for FTHL17E (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071815

Ensembl transcript IDs: ENSMUST00000096509.7

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR CCA 90 bp	CCAAAAATGAGTGAACTTTGCTTCAAAACCAACATGAACATTAGGTGTAATGACAGGCACAGCTGGATGTaGGTGTTGATAGCATCCTCG	+
Preference number: 4 (lower is better) Translates to: PKMSELCFKTNMNIRCNDRHSWM*VLIASS Trigger: CGAGGATGCTATCAACACCCACATCCAGCTGTGCCT...GTCATTACACCTAATGTTCATGTTGGTTTTGAAGCAAAGTTCACTCATTTTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096509.7
CDS TCA 90 bp	TGCCCTGAAGGGAGCTGCAGCCTCCACGCTTATTCTGTAGGTGCATaGACATCTCTGCACTGGTCTGGCAGTTGTGTGACTTGGTCAAGA	+
Preference number: 5 (lower is better) Translates to: CPEGSCSLHAYSVGA*TSLHWSGSCVTWSR Trigger: TCTTGACCAAGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATGCACCTACAGAATAAGCGTGGAGGCTGCAGCTCCCTTCAGGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096509.7
CDS-3UTR CAA 90 bp	CCAAAAATGAGTGAACTTTGCTTCAAAACCAACATGAACATTAGGTGTAATGACGTCAAGAAGAAACGCTaGAAGTTCTCCTGGGCCACG	+
Preference number: 5 (lower is better) Translates to: PKMSELCFKTNMNIRCNDVKKKR*KFSWAT Trigger: CGTGGCCCAGGAGAACTTCAAGCGTTTCTTCTTGAC...GTCATTACACCTAATGTTCATGTTGGTTTTGAAGCAAAGTTCACTCATTTTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096509.7
CDS-3UTR CAA 90 bp	CCAAAAATGAGTGAACTTTGCTTCAAAACCAACATGAACATTAGGTGTAATGACTGGCAGTTGTGTGACTaGGTCAAGAAGAAACGCTTG	+
Preference number: 5 (lower is better) Translates to: PKMSELCFKTNMNIRCNDWQLCD*VKKKRL Trigger: CAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCA...GTCATTACACCTAATGTTCATGTTGGTTTTGAAGCAAAGTTCACTCATTTTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000096509.7
CDS CCA 72 bp	CATGGCTTGAAATCCCCCGTGCCAGCTGTCACGTTCTaGTCTCGCGATGCCCTGAAGGGAGCTGCAGCCTCC	+
Preference number: 6 (lower is better) Translates to: HGLKSPVPAVTF*SRDALKGAAAS Trigger: GGAGGCTGCAGCTCCCTTCAGGGCATCGCGAGACCAGAACGTGACAGCTGGCACGGGGGATTTCAAGCCATG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000096509.7
CDS TCA 72 bp	CCGTGCCAGCTGTCACGTTCTGGTCTCGCGATGCCCTaGAGGGAGCTGCAGCCTCCACGCTTATTCTGTAGG	+
Preference number: 6 (lower is better) Translates to: PCQLSRSGLAMP*RELQPPRLFCR Trigger: CCTACAGAATAAGCGTGGAGGCTGCAGCTCCCTTCAGGGCATCGCGAGACCAGAACGTGACAGCTGGCACGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096509.7
CDS TCA 72 bp	GGGAGCTGCAGCCTCCACGCTTATTCTGTAGGTGCATaGACATCTCTGCACTGGTCTGGCAGTTGTGTGACT	+
Preference number: 6 (lower is better) Translates to: GSCSLHAYSVGA*TSLHWSGSCVT Trigger: AGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATGCACCTACAGAATAAGCGTGGAGGCTGCAGCTCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096509.7
CDS CCA 72 bp	TTATTCTGTAGGTGCATGAACATCTCTGCACTGGTCTaGCAGTTGTGTGACTTGGTCAAGAAGAAACGCTTG	+
Preference number: 6 (lower is better) Translates to: LFCRCMNISALV*QLCDLVKKKRL Trigger: CAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATGCACCTACAGAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096509.7

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