Pregenerated sensors for FTHL17C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060685Ensembl transcript IDs: ENSMUST00000075792.5
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GCAACAGTCCATCAGAAACCGAAAATGAGTGGACTTTaGTTCAAAACCAACATGAACATCAGGTGTAATGAC | + |
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Preference number: 3 (lower is better) Translates to: ATVHQKPKMSGL*FKTNMNIRCND Trigger: GTCATTACACCTGATGTTCATGTTGGTTTTGAAGCAAAGTCCACTCATTTTCGGTTTCTGATGGACTGTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075792.5 |
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| CDS-3UTR TCA 90 bp | CCATCAGAAACCGAAAATGAGTGGACTTTGCTTCAAAACCAACATGAACATCAGTATTCTGCAGGTGCATaGACATCTCTGCACTGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: PSETENEWTLLQNQHEHQYSAGA*TSLHWS Trigger: AGACCAGTGCAGAGATGTTCATGCACCTGCAGAATA...CTGATGTTCATGTTGGTTTTGAAGCAAAGTCCACTCATTTTCGGTTTCTGATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075792.5 |
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| CDS CCA 90 bp | GGCACATTCCATGGCTTGAAATCCCCCGTGCCAGCTGTCACGTTCTaGTCTCGCGATGTCCTGAAGGGAGATGCAGCCTCCACGCTTATT | + |
|
Preference number: 5 (lower is better) Translates to: GTFHGLKSPVPAVTF*SRDVLKGDAASTLI Trigger: AATAAGCGTGGAGGCTGCATCTCCCTTCAGGACATCGCGAGACCAGAACGTGACAGCTGGCACGGGGGATTTCAAGCCATGGAATGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075792.5 |
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| CDS-3UTR CAA 90 bp | CAGAAACCGAAAATGAGTGGACTTTGCTTCAAAACCAACATGAACATCAGGTGTAGCTGGATGTGGGTGTaGATAGCATCCTCACACTGC | + |
|
Preference number: 5 (lower is better) Translates to: QKPKMSGLCFKTNMNIRCSWMWV*IASSHC Trigger: GCAGTGTGAGGATGCTATCAACACCCACATCCAGCT...ACACCTGATGTTCATGTTGGTTTTGAAGCAAAGTCCACTCATTTTCGGTTTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075792.5 |
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| CDS CCA 72 bp | CATGGCTTGAAATCCCCCGTGCCAGCTGTCACGTTCTaGTCTCGCGATGTCCTGAAGGGAGATGCAGCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: HGLKSPVPAVTF*SRDVLKGDAAS Trigger: GGAGGCTGCATCTCCCTTCAGGACATCGCGAGACCAGAACGTGACAGCTGGCACGGGGGATTTCAAGCCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075792.5 |
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