Pregenerated sensors for FTHL17B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078208

Ensembl transcript IDs: ENSMUST00000105006.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	TTATTTAAAGCAACAGTCCATCAGAAACCGAAAATGAGTGAACTTTaGTTCAAAACCAACATGAACATTAGGTGTAATGACCAGAGAAAG	+
Preference number: 1 (lower is better) Translates to: LFKATVHQKPKMSEL*FKTNMNIRCNDQRK Trigger: CTTTCTCTGGTCATTACACCTAATGTTCATGTTGGTTTTGAAGCAAAGTTCACTCATTTTCGGTTTCTGATGGACTGTTGCTTTAAATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105006.2
CDS-3UTR CCA 90 bp	ATGAGTGAACTTTGCTTCAAAACCAACATGAACATTAGGTGTAATGACCAGAGACGCTTGAAGTTCTCCTaGGCCACGTCATCACGGTCA	+
Preference number: 4 (lower is better) Translates to: MSELCFKTNMNIRCNDQRRLKFS*ATSSRS Trigger: TGACCGTGATGACGTGGCCCAGGAGAACTTCAAGCG...TCTCTGGTCATTACACCTAATGTTCATGTTGGTTTTGAAGCAAAGTTCACTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105006.2
CDS-3UTR CCA 90 bp	CATCAGAAACCGAAAATGAGTGAACTTTGCTTCAAAACCAACATGAACATTAGGATCAGCATCTCCATGTaGAAGGCACATTCCATGGCT	+
Preference number: 4 (lower is better) Translates to: HQKPKMSELCFKTNMNIRISISM*KAHSMA Trigger: AGCCATGGAATGTGCCTTCCACATGGAGATGCTGAT...CCTAATGTTCATGTTGGTTTTGAAGCAAAGTTCACTCATTTTCGGTTTCTGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105006.2
CDS TCA 90 bp	CTGCACTGGTCTGGCAGTTGTGTGACTTGGTCAAGAAGAAACGCTTaGAGTTCTCCTGGGCCACGTCATCACGGTCAAAGTAGACTGCCA	+
Preference number: 5 (lower is better) Translates to: LHWSGSCVTWSRRNA*SSPGPRHHGQSRLP Trigger: TGGCAGTCTACTTTGACCGTGATGACGTGGCCCAGGAGAACTTCAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGACCAGTGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105006.2
CDS TCA 90 bp	ATTCTGCAGGTGCATGAACATCTCTGCACTGGTCTGGCAGTTGTGTaGCTTGGTCAAGAAGAAACGCTTGAAGTTCTCCTGGGCCACGTC	+
Preference number: 5 (lower is better) Translates to: ILQVHEHLCTGLAVV*LGQEETLEVLLGHV Trigger: GACGTGGCCCAGGAGAACTTCAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATGCACCTGCAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105006.2
CDS CAA 90 bp	CGCTTATTCTGCAGGTGCATGAACATCTCTGCACTGGTCTGGCAGTaGTGTGACTTGGTCAAGAAGAAACGCTTGAAGTTCTCCTGGGCC	+
Preference number: 6 (lower is better) Translates to: RLFCRCMNISALVWQ*CDLVKKKRLKFSWA Trigger: GGCCCAGGAGAACTTCAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGACCAGTGCAGAGATGTTCATGCACCTGCAGAATAAGCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105006.2
CDS TCA 72 bp	TCTGGCAGTTGTGTGACTTGGTCAAGAAGAAACGCTTaGAGTTCTCCTGGGCCACGTCATCACGGTCAAAGT	+
Preference number: 6 (lower is better) Translates to: SGSCVTWSRRNA*SSPGPRHHGQS Trigger: ACTTTGACCGTGATGACGTGGCCCAGGAGAACTTCAAGCGTTTCTTCTTGACCAAGTCACACAACTGCCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105006.2

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