Pregenerated sensors for FTHL17A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035491Ensembl transcript IDs: ENSMUST00000048382.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGAGGGTCAGGGAGCCCTaGCGCTCGGTCAGCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: LQRMPNRKTGEASRNIMRRVREP*RSVSRE Trigger: CTCCCTGCTGACCGAGCGCCAGGGCTCCCTGACCCT...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR GCA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGGCCAGGCCATACAGCTaGAGAAGGCTCTGGTTGAGT | + |
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Preference number: 4 (lower is better) Translates to: LQRMPNRKTGEASRNIMRARPYS*RRLWLS Trigger: ACTCAACCAGAGCCTTCTGCAGCTGTATGGCCTGGC...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR TCA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGCTGCAACTGGATCTGTaGGTTGAGGGCAGCGTTAGA | + |
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Preference number: 4 (lower is better) Translates to: LQRMPNRKTGEASRNIMRLQLDL*VEGSVR Trigger: TCTAACGCTGCCCTCAACTCACAGATCCAGTTGCAG...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR GCA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGAGAAGAGCATCTCGGTaGGTTCCATCCACTTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LQRMPNRKTGEASRNIMRRRASR*VPSTSE Trigger: CTCAGAAGTGGATGGAACGCACCGAGATGCTCTTCT...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR GCA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGGGCACTTCAGGAAGTTaGACAGGTAGAGGTCACCTT | + |
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Preference number: 4 (lower is better) Translates to: LQRMPNRKTGEASRNIMRGTSGS*TGRGHL Trigger: AAGGTGACCTCTACCTGTGCAACTTCCTGAAGTGCC...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR CCA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGTGCTGTGGCAGAAAGTaGCACTTCAGGAAGTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: LQRMPNRKTGEASRNIMRCCGRK*HFRKLH Trigger: GTGCAACTTCCTGAAGTGCCACTTTCTGCCACAGCA...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR CCA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGAGCTGCAGAAGGCTCTaGTTGAGTGTTTTCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: LQRMPNRKTGEASRNIMRSCRRL*LSVFSR Trigger: TCTGGAGAAAACACTCAACCAGAGCCTTCTGCAGCT...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS GCA 90 bp | TCAGGGAGCCCTGGCGCTCGGTCAGCAGGGAGAAGAGCATCTCGGTaGGTTCCATCCACTTCTGAGACTGACGCAGGAAGAAGAGCGCGA | + |
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Preference number: 5 (lower is better) Translates to: SGSPGARSAGRRASR*VPSTSETDAGRRAR Trigger: TCGCGCTCTTCTTCCTGCGTCAGTCTCAGAAGTGGATGGAACGCACCGAGATGCTCTTCTCCCTGCTGACCGAGCGCCAGGGCTCCCTGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS TCA 90 bp | CATGGAGAGGTAGATGTAACTGCCATACAGCTGCAACTGGATCTGTaGGTTGAGGGCAGCGTTAGACTCCGACAGGTAAGTCTGCTCGAG | + |
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Preference number: 5 (lower is better) Translates to: HGEVDVTAIQLQLDL*VEGSVRLRQVSLLE Trigger: CTCGAGCAGACTTACCTGTCGGAGTCTAACGCTGCCCTCAACTCACAGATCCAGTTGCAGCTGTATGGCAGTTACATCTACCTCTCCATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR CAA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGAACTGGATCTGTGAGTaGAGGGCAGCGTTAGACTCC | + |
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Preference number: 5 (lower is better) Translates to: LQRMPNRKTGEASRNIMRNWICE*RAALDS Trigger: GGAGTCTAACGCTGCCCTCAACTCACAGATCCAGTT...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS-3UTR CAA 90 bp | TTGCAAAGAATGCCAAACAGAAAGACAGGGGAAGCTTCTAGAAATATAATGCGGGCCACCTCTTCTTTATaGCAGAACGAGGCCATGGAG | + |
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Preference number: 5 (lower is better) Translates to: LQRMPNRKTGEASRNIMRATSSL*QNEAME Trigger: CTCCATGGCCTCGTTCTGCAATAAAGAAGAGGTGGC...CCGCATTATATTTCTAGAAGCTTCCCCTGTCTTTCTGTTTGGCATTCTTTGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS GCA 72 bp | CCTGGCGCTCGGTCAGCAGGGAGAAGAGCATCTCGGTaGGTTCCATCCACTTCTGAGACTGACGCAGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: PGARSAGRRASR*VPSTSETDAGR Trigger: TCTTCCTGCGTCAGTCTCAGAAGTGGATGGAACGCACCGAGATGCTCTTCTCCCTGCTGACCGAGCGCCAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS CAA 72 bp | CATCGCCATGAGGCCATCCAACCAGTCCTGGCGGTCTaGATTGGCAATTCTCCCAAGGGTCAGGGAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: HRHEAIQPVLAV*IGNSPKGQGAL Trigger: CAGGGCTCCCTGACCCTTGGGAGAATTGCCAATCAAGACCGCCAGGACTGGTTGGATGGCCTCATGGCGATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS GCA 72 bp | AGAGCGCGAAGGACCCCAGGGCCACCTCTTCTTTATTaGAGAACGAGGCCATGGAGAGGTAGATGTAACTGC | + |
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Preference number: 6 (lower is better) Translates to: RARRTPGPPLLY*RTRPWRGRCNC Trigger: GCAGTTACATCTACCTCTCCATGGCCTCGTTCTGCAATAAAGAAGAGGTGGCCCTGGGGTCCTTCGCGCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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| CDS TCA 72 bp | GTAGATGTAACTGCCATACAGCTGCAACTGGATCTGTaGGTTGAGGGCAGCGTTAGACTCCGACAGGTAAGT | + |
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Preference number: 6 (lower is better) Translates to: VDVTAIQLQLDL*VEGSVRLRQVS Trigger: ACTTACCTGTCGGAGTCTAACGCTGCCCTCAACTCACAGATCCAGTTGCAGCTGTATGGCAGTTACATCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048382.5 |
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