Pregenerated sensors for FTDC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055789Ensembl transcript IDs: ENSMUST00000053249.9
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TGCATACCCTCAGGATACTTTTATCAGTTCCCCATCTaGCCCTTCTTATGCATTAAACTCTTAAGCACATTT | + |
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Preference number: 3 (lower is better) Translates to: CIPSGYFYQFPI*PFLCIKLLSTF Trigger: AAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTGATAAAAGTATCCTGAGGGTATGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR TCA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACGTGGTGGTGGCTTTATaGTCTCCAGGCTTGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: PICPFLCIKLLSTFMMQNVVVAL*SPGLLL Trigger: AAGAAGCAAGCCTGGAGATCATAAAGCCACCACCAC...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGAATTGGAGGTGGTGGTaGCTTTATGATCTCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMNWRWW*LYDLQA Trigger: AGCCTGGAGATCATAAAGCCACCACCACCTCCAATT...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR GCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGGAAACTGTGGGCCATTaGAAAATACACATGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMETVGH*KIHMGG Trigger: ACCTCCCATGTGTATTTTGCAATGGCCCACAGTTTC...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR GCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGGCCAGGGTTTCAAAGTaGTGGACAAAAGGAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMARVSK*WTKGKV Trigger: GACTTTTCCTTTTGTCCAGCACTTTGAAACCCTGGC...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACAGCAATTGGAGGTGGTaGTGGCTTTATGATCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PICPFLCIKLLSTFMMQNSNWRW*WLYDLQ Trigger: CTGGAGATCATAAAGCCACCACCACCTCCAATTGCT...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCCAGTCATGAAACTGTaGGCCATTGCAAAATACACA | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMPVMKL*AIAKYT Trigger: TGTGTATTTTGCAATGGCCCACAGTTTCATGACTGG...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGAGGGTTTCAAAGTGCTaGACAAAAGGAAAAGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMRVSKC*TKGKVS Trigger: GGAGACTTTTCCTTTTGTCCAGCACTTTGAAACCCT...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGGTCTCTTCCATATTCTaGGCCATTAGTAAGGCACTT | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMVSSIF*AISKAL Trigger: AAGTGCCTTACTAATGGCCCAGAATATGGAAGAGAC...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGGAAGGTTGTTCAGTCTaGGCTTCCTTCTCATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMEGCSV*ASFSFF Trigger: AAAGAATGAGAAGGAAGCCCAGACTGAACAACCTTC...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACAACCTTCTCATACGTTaGAGGAGGGCAGATCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: PICPFLCIKLLSTFMMQNNLLIR*RRADLF Trigger: AAAAAGATCTGCCCTCCTCCAACGTATGAGAAGGTT...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGGGGCTAGCAGGATTTTaGTTAATGTCTCTTCCATAT | + |
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Preference number: 4 (lower is better) Translates to: QFPICPFLCIKLLSTFMMGLAGF*LMSLPY Trigger: ATATGGAAGAGACATTAACCAAAATCCTGCTAGCCC...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CCA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACTTACGGGTCCATAGATaGTTTAGGAATCTATTTGCA | + |
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Preference number: 4 (lower is better) Translates to: PICPFLCIKLLSTFMMQNLRVHR*FRNLFA Trigger: TGCAAATAGATTCCTAAACCATCTATGGACCCGTAA...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CCA 90 bp | CTATTTGCATATTCCCTCCTTGAATCAGCCAGGGTTTCAAAGTGCTaGACAAAAGGAAAAGTCTCCTTCTTGCCAGTCATGAAACTGTGG | + |
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Preference number: 5 (lower is better) Translates to: LFAYSLLESARVSKC*TKGKVSFLPVMKLW Trigger: CCACAGTTTCATGACTGGCAAGAAGGAGACTTTTCCTTTTGTCCAGCACTTTGAAACCCTGGCTGATTCAAGGAGGGAATATGCAAATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CCA 90 bp | TCATACGTTGGAGGAGGGCAGATCTTTTTGTTACGGGTCCATAGATaGTTTAGGAATCTATTTGCATATTCCCTCCTTGAATCAGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: SYVGGGQIFLLRVHR*FRNLFAYSLLESAR Trigger: CCTGGCTGATTCAAGGAGGGAATATGCAAATAGATTCCTAAACCATCTATGGACCCGTAACAAAAAGATCTGCCCTCCTCCAACGTATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGGGAAAAGTCTCCTTCTaGCCAGTCATGAAACTGTGG | + |
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Preference number: 5 (lower is better) Translates to: QFPICPFLCIKLLSTFMMGKVSF*PVMKLW Trigger: CCACAGTTTCATGACTGGCAAGAAGGAGACTTTTCC...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS GCA 90 bp | AATCTATTTGCATATTCCCTCCTTGAATCAGCCAGGGTTTCAAAGTaGTGGACAAAAGGAAAAGTCTCCTTCTTGCCAGTCATGAAACTG | + |
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Preference number: 5 (lower is better) Translates to: NLFAYSLLESARVSK*WTKGKVSFLPVMKL Trigger: CAGTTTCATGACTGGCAAGAAGGAGACTTTTCCTTTTGTCCAGCACTTTGAAACCCTGGCTGATTCAAGGAGGGAATATGCAAATAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCTTGGTTCAAAGCCTTaGTGCATTCTTCAGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: QFPICPFLCIKLLSTFMMLGSKP*CILQRR Trigger: CCTTCTCTGAAGAATGCACAAAGGCTTTGAACCAAG...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACGTGGTAAGCCACAACTaGGTTCAAAGCCTTTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: PICPFLCIKLLSTFMMQNVVSHN*VQSLCA Trigger: TGCACAAAGGCTTTGAACCAAGTTGTGGCTTACCAC...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGTTGCATATTCCCTCCTaGAATCAGCCAGGGTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: QFPICPFLCIKLLSTFMMLHIPS*NQPGFQ Trigger: TTGAAACCCTGGCTGATTCAAGGAGGGAATATGCAA...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACCCAGGCTTGCTTCTTTaGCTACTGAGGTACCCTTTT | + |
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Preference number: 5 (lower is better) Translates to: PICPFLCIKLLSTFMMQNPGLLL*LLRYPF Trigger: AAAAGGGTACCTCAGTAGCAAAAGAAGCAAGCCTGG...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CAGTTCCCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGTTGCGGAGGAGAAAGTaGACTTTCCAGATACTCTTT | + |
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Preference number: 5 (lower is better) Translates to: QFPICPFLCIKLLSTFMMLRRRK*TFQILF Trigger: AAAGAGTATCTGGAAAGTCAACTTTCTCCTCCGCAA...CATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGGGAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACCTTTCTTTTACCTTTTaGCGGAGGAGAAAGTTGACT | + |
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Preference number: 5 (lower is better) Translates to: PICPFLCIKLLSTFMMQNLSFTF*RRRKLT Trigger: AGTCAACTTTCTCCTCCGCAAAAAGGTAAAAGAAAG...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS-3UTR CAA 90 bp | CCCATCTGCCCCTTCTTATGCATTAAACTCTTAAGCACATTTATGATGCAAAACGGTTTAGGAATCTATTaGCATATTCCCTCCTTGAAT | + |
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Preference number: 5 (lower is better) Translates to: PICPFLCIKLLSTFMMQNGLGIY*HIPSLN Trigger: ATTCAAGGAGGGAATATGCAAATAGATTCCTAAACC...GTTTTGCATCATAAATGTGCTTAAGAGTTTAATGCATAAGAAGGGGCAGATGGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CAA 72 bp | ATACACATGGGAGGTGTGCAGGTGGTAAGCCACAACTaGGTTCAAAGCCTTTGTGCATTCTTCAGAGAAGGG | + |
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Preference number: 6 (lower is better) Translates to: IHMGGVQVVSHN*VQSLCAFFREG Trigger: CCCTTCTCTGAAGAATGCACAAAGGCTTTGAACCAAGTTGTGGCTTACCACCTGCACACCTCCCATGTGTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CAA 90 bp | CATTGCAAAATACACATGGGAGGTGTGCAGGTGGTAAGCCACAACTaGGTTCAAAGCCTTTGTGCATTCTTCAGAGAAGGGATGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: HCKIHMGGVQVVSHN*VQSLCAFFREGMAG Trigger: TCCTGCCATCCCTTCTCTGAAGAATGCACAAAGGCTTTGAACCAAGTTGTGGCTTACCACCTGCACACCTCCCATGTGTATTTTGCAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS GCA 72 bp | GCATATTCCCTCCTTGAATCAGCCAGGGTTTCAAAGTaGTGGACAAAAGGAAAAGTCTCCTTCTTGCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: AYSLLESARVSK*WTKGKVSFLPV Trigger: GACTGGCAAGAAGGAGACTTTTCCTTTTGTCCAGCACTTTGAAACCCTGGCTGATTCAAGGAGGGAATATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CCA 72 bp | AAAGGAAAAGTCTCCTTCTTGCCAGTCATGAAACTGTaGGCCATTGCAAAATACACATGGGAGGTGTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: KGKVSFLPVMKL*AIAKYTWEVCR Trigger: CCTGCACACCTCCCATGTGTATTTTGCAATGGCCCACAGTTTCATGACTGGCAAGAAGGAGACTTTTCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CCA 72 bp | CACGACGTGCAGCAGCCTTTAGGGCTAGCAGGATTTTaGTTAATGTCTCTTCCATATTCTGGGCCATTAGTA | + |
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Preference number: 6 (lower is better) Translates to: HDVQQPLGLAGF*LMSLPYSGPLV Trigger: TACTAATGGCCCAGAATATGGAAGAGACATTAACCAAAATCCTGCTAGCCCTAAAGGCTGCTGCACGTCGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CAA 72 bp | TGTGCAGGTGGTAAGCCACAACTTGGTTCAAAGCCTTaGTGCATTCTTCAGAGAAGGGATGGCAGGAAAACA | + |
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Preference number: 6 (lower is better) Translates to: CAGGKPQLGSKP*CILQRRDGRKT Trigger: TGTTTTCCTGCCATCCCTTCTCTGAAGAATGCACAAAGGCTTTGAACCAAGTTGTGGCTTACCACCTGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CCA 72 bp | GGAGGAGGGCAGATCTTTTTGTTACGGGTCCATAGATaGTTTAGGAATCTATTTGCATATTCCCTCCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: GGGQIFLLRVHR*FRNLFAYSLLE Trigger: TTCAAGGAGGGAATATGCAAATAGATTCCTAAACCATCTATGGACCCGTAACAAAAAGATCTGCCCTCCTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CAA 72 bp | ATAGATGGTTTAGGAATCTATTTGCATATTCCCTCCTaGAATCAGCCAGGGTTTCAAAGTGCTGGACAAAAG | + |
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Preference number: 6 (lower is better) Translates to: IDGLGIYLHIPS*NQPGFQSAGQK Trigger: CTTTTGTCCAGCACTTTGAAACCCTGGCTGATTCAAGGAGGGAATATGCAAATAGATTCCTAAACCATCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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| CDS CAA 72 bp | TTTTGTTACGGGTCCATAGATGGTTTAGGAATCTATTaGCATATTCCCTCCTTGAATCAGCCAGGGTTTCAA | + |
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Preference number: 6 (lower is better) Translates to: FCYGSIDGLGIY*HIPSLNQPGFQ Trigger: TTGAAACCCTGGCTGATTCAAGGAGGGAATATGCAAATAGATTCCTAAACCATCTATGGACCCGTAACAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053249.9 |
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