Pregenerated sensors for FTDC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075002

Ensembl transcript IDs: ENSMUST00000099663.3

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CGGTTAATTCATTTTCCATGTTTAGAATATCTATCGCACACTGGATaGAGCCCTGGGTGTCTATTTCAGGCCTCTGAATTTCCGGAATGC	+
Preference number: 5 (lower is better) Translates to: RLIHFPCLEYLSHTG*SPGCLFQASEFPEC Trigger: GCATTCCGGAAATTCAGAGGCCTGAAATAGACACCCAGGGCTGCATCCAGTGTGCGATAGATATTCTAAACATGGAAAATGAATTAACCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS GCA 90 bp	CTCCTGAGCCAGTTTTTCTTTCCTCCTCAGCTCAACAATTTCCAATaGCAAACGGTCTTCATTCCTTCTCTGTGTATATATCAACTCTTT	+
Preference number: 5 (lower is better) Translates to: LLSQFFFPPQLNNFQ*QTVFIPSLCIYQLF Trigger: AAAGAGTTGATATATACACAGAGAAGGAATGAAGACCGTTTGGCATTGGAAATTGTTGAGCTGAGGAGGAAAGAAAAACTGGCTCAGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS GCA 90 bp	ATTGTAGTGTTATCTTTAACAGTTAAGGCGACATCTTGCAGGTCGTaGAGGATCTCGGTTAATTCATTTTCCATGTTTAGAATATCTATC	+
Preference number: 5 (lower is better) Translates to: IVVLSLTVKATSCRS*RISVNSFSMFRISI Trigger: GATAGATATTCTAAACATGGAAAATGAATTAACCGAGATCCTGCACGACCTGCAAGATGTCGCCTTAACTGTTAAAGATAACACTACAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS GCA 90 bp	GTAAATGTTATTGTAGTGTTATCTTTAACAGTTAAGGCGACATCTTaGAGGTCGTGCAGGATCTCGGTTAATTCATTTTCCATGTTTAGA	+
Preference number: 5 (lower is better) Translates to: VNVIVVLSLTVKATS*RSCRISVNSFSMFR Trigger: TCTAAACATGGAAAATGAATTAACCGAGATCCTGCACGACCTGCAAGATGTCGCCTTAACTGTTAAAGATAACACTACAATAACATTTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS GCA 72 bp	CATTTTCCATGTTTAGAATATCTATCGCACACTGGATaGAGCCCTGGGTGTCTATTTCAGGCCTCTGAATTT	+
Preference number: 6 (lower is better) Translates to: HFPCLEYLSHTG*SPGCLFQASEF Trigger: AAATTCAGAGGCCTGAAATAGACACCCAGGGCTGCATCCAGTGTGCGATAGATATTCTAAACATGGAAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS TCA 72 bp	CGCTGTACAAGCAAGCCAAGAACATATAAGCATCACTaGGGTTCATCTGCATACAGGCAATTCGATGAATAT	+
Preference number: 6 (lower is better) Translates to: RCTSKPRTYKHH*GSSAYRQFDEY Trigger: ATATTCATCGAATTGCCTGTATGCAGATGAACCTCAGTGATGCTTATATGTTCTTGGCTTGCTTGTACAGCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS TCA 72 bp	GAATTTCCGGAATGCAGACCTTATTACCTCTTTCGGTaGTGTATGCCAGGATTCTTTTGGCATAAAACCATT	+
Preference number: 6 (lower is better) Translates to: EFPECRPYYLFR*CMPGFFWHKTI Trigger: AATGGTTTTATGCCAAAAGAATCCTGGCATACATCACCGAAAGAGGTAATAAGGTCTGCATTCCGGAAATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS GCA 72 bp	TTATCTTTAACAGTTAAGGCGACATCTTGCAGGTCGTaGAGGATCTCGGTTAATTCATTTTCCATGTTTAGA	+
Preference number: 6 (lower is better) Translates to: LSLTVKATSCRS*RISVNSFSMFR Trigger: TCTAAACATGGAAAATGAATTAACCGAGATCCTGCACGACCTGCAAGATGTCGCCTTAACTGTTAAAGATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099663.3
CDS GCA 72 bp	CAGTTTTTCTTTCCTCCTCAGCTCAACAATTTCCAATaGCAAACGGTCTTCATTCCTTCTCTGTGTATATAT	+
Preference number: 6 (lower is better) Translates to: QFFFPPQLNNFQ*QTVFIPSLCIY Trigger: ATATATACACAGAGAAGGAATGAAGACCGTTTGGCATTGGAAATTGTTGAGCTGAGGAGGAAAGAAAAACTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099663.3

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