RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FSCN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029707

Ensembl transcript IDs: ENSMUST00000031719.7

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CAA 90 bp CTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTTGGAGGATTGACAGTTaGGCAGGTGACATCCCATTG +
Preference number: 3 (lower is better)
Translates to: LLVDRDSGAPALFSSEVVWRIDS*AGDIPL
Trigger: CAATGGGATGTCACCTGCCAAACTGTCAATCCTCCA...AACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp TCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCTGGGTGCCAGCACCGTaGGCAAGCTGCTCCCCTGTA +
Preference number: 4 (lower is better)
Translates to: SSWIVTLGLLPCLVQRLFWVPAP*ASCSPV
Trigger: TACAGGGGAGCAGCTTGCTCACGGTGCTGGCACCCA...GAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp AGGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGGTGAGGTAGGTTCCTaGCCAGCTGATGAGCCCAAC +
Preference number: 4 (lower is better)
Translates to: RKNRTAHSLLVDRDSGAPGEVGS*PADEPN
Trigger: GTTGGGCTCATCAGCTGGGCAGGAACCTACCTCACC...AGGAGCCCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp AGGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTACTGGAGGGTCCATTTaGCGTTTCGGTGGAAGCGGA +
Preference number: 4 (lower is better)
Translates to: RKNRTAHSLLVDRDSGAPTGGSI*RFGGSG
Trigger: TCCGCTTCCACCGAAACGGCAAATGGACCCTCCAGT...AGGAGCCCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp AGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGATAGCGACCAGAGATaGTGCACTGGAGGGTCCATT +
Preference number: 4 (lower is better)
Translates to: SLLVDRDSGAPALFSSEVDSDQR*CTGGSI
Trigger: AATGGACCCTCCAGTGCATCATCTCTGGTCGCTATC...AACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp AGGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTTGGGAGCAGAGCCCATaGCCAGTAGAAGATGTGAAC +
Preference number: 4 (lower is better)
Translates to: RKNRTAHSLLVDRDSGAPWEQSP*PVEDVN
Trigger: GTTCACATCTTCTACTGGGCATGGGCTCTGCTCCCA...AGGAGCCCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp CTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTGTAGAAGCCATTGGGTaGCAGCACCGTGAGCAAGCT +
Preference number: 4 (lower is better)
Translates to: LLVDRDSGAPALFSSEVVVEAIG*QHREQA
Trigger: AGCTTGCTCACGGTGCTGGCACCCAATGGCTTCTAC...AACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CCA 90 bp AGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTCATGCAAGGCTGGCCTaGGAGTCCACATATGGTAAG +
Preference number: 4 (lower is better)
Translates to: SLLVDRDSGAPALFSSEVHARLA*ESTYGK
Trigger: CTTACCATATGTGGACTCCCAGGCCAGCCTTGCATG...AACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp AGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTAGTAGCCATTGGCTaGACGAAGTTGCAAGGTAGG +
Preference number: 4 (lower is better)
Translates to: SLLVDRDSGAPALFSSEVVVAIG*TKLQGR
Trigger: CCTACCTTGCAACTTCGTTCAGCCAATGGCTACTAC...AACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp AGGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGAAGGATCCACCCTGTaGCTGAAAGTGATAGATGCC +
Preference number: 4 (lower is better)
Translates to: RKNRTAHSLLVDRDSGAPEGSTL*LKVIDA
Trigger: GGCATCTATCACTTTCAGGCACAGGGTGGATCCTTC...AGGAGCCCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp TCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCCCCAAGGGCGGAAGGTaGCAAAGGATGTTATTGACC +
Preference number: 4 (lower is better)
Translates to: SSWIVTLGLLPCLVQRLFPKGGR*QRMLLT
Trigger: GGTCAATAACATCCTTTGGCACCTTCCGCCCTTGGG...GAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CCA 90 bp GGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGCTAGGTAGTAGCCATTaGCTGAACGAAGTTGCAAGG +
Preference number: 4 (lower is better)
Translates to: GKIAQHTASSWIVTLGLLLGSSH*LNEVAR
Trigger: CCTTGCAACTTCGTTCAGCCAATGGCTACTACCTAG...CAGGAGCCCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp CTAGGTAGGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGTATATGCTTCAAAGGTaGGGTAGGTTCCTGCCCAGC +
Preference number: 4 (lower is better)
Translates to: LGRKNRTAHSLLVDRDSGYMLQR*GRFLPS
Trigger: GCTGGGCAGGAACCTACCTCACCTTTGAAGCATATA...CCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCCTACCTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp CCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGGAGGATTGACAGTTTGGCAGGTGAGGAAGCATCCGTGGTaGCTAGTTCTTGGCCTGCCA +
Preference number: 4 (lower is better)
Translates to: PALFSSEVVPGGLTVWQVRKHPW*LVLGLP
Trigger: TGGCAGGCCAAGAACTAGTCACCACGGATGCTTCCT...CACCTGCCAAACTGTCAATCCTCCAGGAACAACCTCTGAACTAAACAGGGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp AGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTCCACATATGGTAAGCTaGAAGAACCCTGGAGTTGCA +
Preference number: 4 (lower is better)
Translates to: SLLVDRDSGAPALFSSEVPHMVS*KNPGVA
Trigger: TGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGG...AACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp CCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGGAGGATTGACAGTTTGGCAGGTGGTCTGTGATGAGCGTTaGGGGACCAGACGGTCTACT +
Preference number: 4 (lower is better)
Translates to: PALFSSEVVPGGLTVWQVVCDER*GTRRST
Trigger: AGTAGACCGTCTGGTCCCTCAACGCTCATCACAGAC...CACCTGCCAAACTGTCAATCCTCCAGGAACAACCTCTGAACTAAACAGGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp CTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTGCCAAAGGATGTTATTaGCCAGAAGGATCCACCCTG +
Preference number: 4 (lower is better)
Translates to: LLVDRDSGAPALFSSEVVAKGCY*PEGSTL
Trigger: CAGGGTGGATCCTTCTGGTCAATAACATCCTTTGGC...AACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp CTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCCTCCTGCGGATACAATGTaGCGCCTTCTCCATCACATA +
Preference number: 4 (lower is better)
Translates to: LVDRDSGAPALFSSEVVPPADTM*RLLHHI
Trigger: TATGTGATGGAGAAGGCGGCACATTGTATCCGCAGG...AGGAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp CTGTTTAGTTCAGAGGTTGTTCCTGGAGGATTGACAGTTTGGCAGGTGACATCCGGCCATCAGAGGCTATaGCCAGGAACCGCCCATTGG +
Preference number: 4 (lower is better)
Translates to: LFSSEVVPGGLTVWQVTSGHQRL*PGTAHW
Trigger: CCAATGGGCGGTTCCTGGGCATAGCCTCTGATGGCC...GGATGTCACCTGCCAAACTGTCAATCCTCCAGGAACAACCTCTGAACTAAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CCA 90 bp CTAGGTAGGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGCATAGCTGTGGTAGATaGGGCTGTAGAGGATCACGT +
Preference number: 4 (lower is better)
Translates to: LGRKNRTAHSLLVDRDSGHSCGR*GCRGSR
Trigger: ACGTGATCCTCTACAGCCCCATCTACCACAGCTATG...CCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCCTACCTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CCA 90 bp TCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCTGGAACAAGGACATCTaGGTCAAACGCTCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: SSWIVTLGLLPCLVQRLFWNKDI*VKRSEA
Trigger: TGCTTCTGAGCGTTTGACCCAGATGTCCTTGTTCCA...GAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CCA 90 bp TCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGTCACATTCGTACTaGAACAAGGACATCTGGGTC +
Preference number: 4 (lower is better)
Translates to: SSWIVTLGLLPCLVQRLFLSHSY*NKDIWV
Trigger: GACCCAGATGTCCTTGTTCCAGTACGAATGTGACAG...GAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp CTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCCTAAAGAACCCTGGAGTTaGAGAATACATCCTCCCCAT +
Preference number: 4 (lower is better)
Translates to: LVDRDSGAPALFSSEVVPKEPWS*RIHPPH
Trigger: ATGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTT...AGGAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp CCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGGAGGATTGACAGTTTGGCAGGTGAGAAGATGTGAACCCTaGGGATACAATGTGCCGCCT +
Preference number: 4 (lower is better)
Translates to: PALFSSEVVPGGLTVWQVRRCEP*GYNVPP
Trigger: AGGCGGCACATTGTATCCGCAGGGTTCACATCTTCT...CACCTGCCAAACTGTCAATCCTCCAGGAACAACCTCTGAACTAAACAGGGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR GCA 90 bp CCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGGAGGATTGACAGTTTGGCAGGTGCCTGAAAGTGATAGATaGCCTGGCGACAGGGCAATA +
Preference number: 4 (lower is better)
Translates to: PALFSSEVVPGGLTVWQVPESDR*PGDRAI
Trigger: TATTGCCCTGTCGCCAGGGCATCTATCACTTTCAGG...CACCTGCCAAACTGTCAATCCTCCAGGAACAACCTCTGAACTAAACAGGGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CCA 90 bp TCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCAAGCTGAAAGAACCCTaGAGTTGCAGAATACATCCT +
Preference number: 4 (lower is better)
Translates to: SSWIVTLGLLPCLVQRLFKLKEP*SCRIHP
Trigger: AGGATGTATTCTGCAACTCCAGGGTTCTTTCAGCTT...GAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CCA 90 bp GTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGGAACTCGAGACAAGAAATaGTGTGTAGAAGTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: VDRDSGAPALFSSEVVPGTRDKK*CVEVSR
Trigger: TCTGGAGACTTCTACACACCATTTCTTGTCTCGAGT...TCCAGGAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp TCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCTCTTTGCAGAAGCTGTaGCTGAACTCTTATATGCTT +
Preference number: 4 (lower is better)
Translates to: SSWIVTLGLLPCLVQRLFSLQKL*LNSYML
Trigger: AAGCATATAAGAGTTCAGTCACAGCTTCTGCAAAGA...GAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR TCA 90 bp CCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGGAGGATTGACAGTTTGGCAGGTGTGCAGAAGCTGTGACTaGACTCTTATATGCTTCAAA +
Preference number: 4 (lower is better)
Translates to: PALFSSEVVPGGLTVWQVCRSCD*TLICFK
Trigger: TTTGAAGCATATAAGAGTTCAGTCACAGCTTCTGCA...CACCTGCCAAACTGTCAATCCTCCAGGAACAACCTCTGAACTAAACAGGGCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 90 bp GCAGGGGATTGCTGCGTCTACCCAGATTCGGCCCACAGTGTGGTCTaGTCGGGCATAGCTGTGGTAGATGGGGCTGTAGAGGATCACGTG +
Preference number: 5 (lower is better)
Translates to: AGDCCVYPDSAHSVV*SGIAVVDGAVEDHV
Trigger: CACGTGATCCTCTACAGCCCCATCTACCACAGCTATGCCCGAGCAGACCACACTGTGGGCCGAATCTGGGTAGACGCAGCAATCCCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 90 bp CCCAGGTCGGGAAGTGCTGTAGGACAAACCACTCCTCGCCCTTCATaGGAGCAGAGCCCATGCCCAGTAGAAGATGTGAACCCTGCGGAT +
Preference number: 5 (lower is better)
Translates to: PRSGSAVGQTTPRPS*EQSPCPVEDVNPAD
Trigger: ATCCGCAGGGTTCACATCTTCTACTGGGCATGGGCTCTGCTCCCATGAAGGGCGAGGAGTGGTTTGTCCTACAGCACTTCCCGACCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 90 bp GCACTCGGAAGAAGGTGTCAGACTCCATGGGGTGTCCGTCAGCGATaGTTGCCCGATGCCTCCTCTGAGCTAGGTAGTAGCCATTGGCTG +
Preference number: 5 (lower is better)
Translates to: ALGRRCQTPWGVRQR*LPDASSELGSSHWL
Trigger: CAGCCAATGGCTACTACCTAGCTCAGAGGAGGCATCGGGCAATCATCGCTGACGGACACCCCATGGAGTCTGACACCTTCTTCCGAGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 90 bp CAGAGCCCATGCCCAGTAGAAGATGTGAACCCTGCGGATACAATGTaGCGCCTTCTCCATCACATAGGGCCACGAGTCCTCGAGGCCGTA +
Preference number: 5 (lower is better)
Translates to: QSPCPVEDVNPADTM*RLLHHIGPRVLEAV
Trigger: TACGGCCTCGAGGACTCGTGGCCCTATGTGATGGAGAAGGCGGCACATTGTATCCGCAGGGTTCACATCTTCTACTGGGCATGGGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CAA 90 bp CTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCCTCACTGGAGGGTCCATTaGCCGTTTCGGTGGAAGCGG +
Preference number: 5 (lower is better)
Translates to: LVDRDSGAPALFSSEVVPHWRVH*PFRWKR
Trigger: CCGCTTCCACCGAAACGGCAAATGGACCCTCCAGTG...AGGAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 90 bp GCTGTAGGACAAACCACTCCTCGCCCTTCATGGGAGCAGAGCCCATaGCCAGTAGAAGATGTGAACCCTGCGGATACAATGTGCCGCCTT +
Preference number: 5 (lower is better)
Translates to: AVGQTTPRPSWEQSP*PVEDVNPADTMCRL
Trigger: AAGGCGGCACATTGTATCCGCAGGGTTCACATCTTCTACTGGGCATGGGCTCTGCTCCCATGAAGGGCGAGGAGTGGTTTGTCCTACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 90 bp CATCAGAGGCTATGCCCAGGAACCGCCCATTGGGGGACTGCAGGGTaGTTTTCCCACAATTCCAGTGCACTCGGAAGAAGGTGTCAGACT +
Preference number: 5 (lower is better)
Translates to: HQRLCPGTAHWGTAG*FSHNSSALGRRCQT
Trigger: AGTCTGACACCTTCTTCCGAGTGCACTGGAATTGTGGGAAAATCACCCTGCAGTCCCCCAATGGGCGGTTCCTGGGCATAGCCTCTGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 90 bp GTTTCGGTGGAAGCGGAGCAGGAAGCATCCGTGGTGACTAGTTCTTaGCCTGCCATAGCACACAGTACCATCTGCTTCGCACAGCAGGTA +
Preference number: 5 (lower is better)
Translates to: VSVEAEQEASVVTSS*PAIAHSTICFAQQV
Trigger: TACCTGCTGTGCGAAGCAGATGGTACTGTGTGCTATGGCAGGCCAAGAACTAGTCACCACGGATGCTTCCTGCTCCGCTTCCACCGAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CAA 90 bp GGAAAAATCGCACAGCACACAGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGTTAGGTCCTCCGCCTTaGGATGTCTGTGTATCCAGT +
Preference number: 5 (lower is better)
Translates to: GKIAQHTASSWIVTLGLLLGPPP*DVCVSS
Trigger: ACTGGATACACAGACATCCAAAGGCGGAGGACCTAA...CAGGAGCCCCAGAGTCACGATCCACGAGGAGGCTGTGTGCTGTGCGATTTTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 90 bp TGCAGAATACATCCTCCCCATCGGACTCAAGATAGCGACCAGAGATaGTGCACTGGAGGGTCCATTTGCCGTTTCGGTGGAAGCGGAGCA +
Preference number: 5 (lower is better)
Translates to: CRIHPPHRTQDSDQR*CTGGSICRFGGSGA
Trigger: TGCTCCGCTTCCACCGAAACGGCAAATGGACCCTCCAGTGCATCATCTCTGGTCGCTATCTTGAGTCCGATGGGGAGGATGTATTCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 90 bp CACGTGGACATGCAAGGCTGGCCTGGGAGTCCACATATGGTAAGCTaGAAGAACCCTGGAGTTGCAGAATACATCCTCCCCATCGGACTC +
Preference number: 5 (lower is better)
Translates to: HVDMQGWPGSPHMVS*KNPGVAEYILPIGL
Trigger: GAGTCCGATGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGGACTCCCAGGCCAGCCTTGCATGTCCACGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 90 bp GGTAGATGGGGCTGTAGAGGATCACGTGGACATGCAAGGCTGGCCTaGGAGTCCACATATGGTAAGCTGAAAGAACCCTGGAGTTGCAGA +
Preference number: 5 (lower is better)
Translates to: GRWGCRGSRGHARLA*ESTYGKLKEPWSCR
Trigger: TCTGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGGACTCCCAGGCCAGCCTTGCATGTCCACGTGATCCTCTACAGCCCCATCTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CAA 90 bp AGCCTCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGAAAGAACCCTGGAGTaGCAGAATACATCCTCCCCA +
Preference number: 5 (lower is better)
Translates to: SLLVDRDSGAPALFSSEVERTLE*QNTSSP
Trigger: TGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTTC...AACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 90 bp GCAAGGCTGGCCTGGGAGTCCACATATGGTAAGCTGAAAGAACCCTaGAGTTGCAGAATACATCCTCCCCATCGGACTCAAGATAGCGAC +
Preference number: 5 (lower is better)
Translates to: ARLAWESTYGKLKEP*SCRIHPPHRTQDSD
Trigger: GTCGCTATCTTGAGTCCGATGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGGACTCCCAGGCCAGCCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 90 bp GAGGGCAAATTTTCCCCAAGGGCGGAAGGTGCCAAAGGATGTTATTaGCCAGAAGGATCCACCCTGTGCCTGAAAGTGATAGATGCCCTG +
Preference number: 5 (lower is better)
Translates to: EGKFSPRAEGAKGCY*PEGSTLCLKVIDAL
Trigger: CAGGGCATCTATCACTTTCAGGCACAGGGTGGATCCTTCTGGTCAATAACATCCTTTGGCACCTTCCGCCCTTGGGGAAAATTTGCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 90 bp CTGGCCTGGGAGTCCACATATGGTAAGCTGAAAGAACCCTGGAGTTaGAGAATACATCCTCCCCATCGGACTCAAGATAGCGACCAGAGA +
Preference number: 5 (lower is better)
Translates to: LAWESTYGKLKEPWS*RIHPPHRTQDSDQR
Trigger: TCTCTGGTCGCTATCTTGAGTCCGATGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGGACTCCCAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CAA 90 bp TCCTCGTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCTGCCAAAGGATGTTATaGACCAGAAGGATCCACCCT +
Preference number: 5 (lower is better)
Translates to: SSWIVTLGLLPCLVQRLFCQRML*TRRIHP
Trigger: AGGGTGGATCCTTCTGGTCAATAACATCCTTTGGCA...GAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCACGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 90 bp CTCCCAGGTCTGTCTCCTGCCCAAACTCTTTGCAGAAGCTGTGACTaGACTCTTATATGCTTCAAAGGTGAGGTAGGTTCCTGCCCAGCT +
Preference number: 5 (lower is better)
Translates to: LPGLSPAQTLCRSCD*TLICFKGEVGSCPA
Trigger: AGCTGGGCAGGAACCTACCTCACCTTTGAAGCATATAAGAGTTCAGTCACAGCTTCTGCAAAGAGTTTGGGCAGGAGACAGACCTGGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 90 bp CCTGCAAGCTCTTTAGTCGTATCACAGCCTGTGATTCATGTTCATTaGTCACCAGGAGCTCCCAGGTCTGTCTCCTGCCCAAACTCTTTG +
Preference number: 5 (lower is better)
Translates to: PASSLVVSQPVIHVH*SPGAPRSVSCPNSL
Trigger: CAAAGAGTTTGGGCAGGAGACAGACCTGGGAGCTCCTGGTGAGCAATGAACATGAATCACAGGCTGTGATACGACTAAAGAGCTTGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 90 bp GCTGAACGAAGTTGCAAGGTAGGAGTCTCACTGTCACATTCGTACTaGAACAAGGACATCTGGGTCAAACGCTCAGAAGCAGCACACACC +
Preference number: 5 (lower is better)
Translates to: AERSCKVGVSLSHSY*NKDIWVKRSEAAHT
Trigger: GGTGTGTGCTGCTTCTGAGCGTTTGACCCAGATGTCCTTGTTCCAGTACGAATGTGACAGTGAGACTCCTACCTTGCAACTTCGTTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS-3UTR CAA 90 bp GTGGATCGTGACTCTGGGGCTCCTGCCCTGTTTAGTTCAGAGGTTGTTCCTGGAAGTTCTATGCAGAAGTaGAGGGCAAATTTTCCCCAA +
Preference number: 5 (lower is better)
Translates to: VDRDSGAPALFSSEVVPGSSMQK*RANFPQ
Trigger: TTGGGGAAAATTTGCCCTCAACTTCTGCATAGAACT...TCCAGGAACAACCTCTGAACTAAACAGGGCAGGAGCCCCAGAGTCACGATCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 90 bp ATGTTATTGACCAGAAGGATCCACCCTGTGCCTGAAAGTGATAGATaGCCTGGCGACAGGGCAATAGCTGAATACAGTCAGGTTGATCCA +
Preference number: 5 (lower is better)
Translates to: MLLTRRIHPVPESDR*PGDRAIAEYSQVDP
Trigger: TGGATCAACCTGACTGTATTCAGCTATTGCCCTGTCGCCAGGGCATCTATCACTTTCAGGCACAGGGTGGATCCTTCTGGTCAATAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 72 bp TGCTGCGTCTACCCAGATTCGGCCCACAGTGTGGTCTaGTCGGGCATAGCTGTGGTAGATGGGGCTGTAGAG +
Preference number: 6 (lower is better)
Translates to: CCVYPDSAHSVV*SGIAVVDGAVE
Trigger: CTCTACAGCCCCATCTACCACAGCTATGCCCGAGCAGACCACACTGTGGGCCGAATCTGGGTAGACGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CAA 90 bp GAGCCCACATACCCATATCGACCGCGTAAGACGAGAAAGGGGCGATaGGCAAATCGAATCCCCAGCTCCTCGTTAGGGCCTGGGATGGTG +
Preference number: 6 (lower is better)
Translates to: EPTYPYRPRKTRKGR*ANRIPSSSLGPGMV
Trigger: CACCATCCCAGGCCCTAACGAGGAGCTGGGGATTCGATTTGCCAATCGCCCCTTTCTCGTCTTACGCGGTCGATATGGGTATGTGGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 72 bp CCACAGTGTGGTCTGCTCGGGCATAGCTGTGGTAGATaGGGCTGTAGAGGATCACGTGGACATGCAAGGCTG +
Preference number: 6 (lower is better)
Translates to: PQCGLLGHSCGR*GCRGSRGHARL
Trigger: CAGCCTTGCATGTCCACGTGATCCTCTACAGCCCCATCTACCACAGCTATGCCCGAGCAGACCACACTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 72 bp AGAAGGTGTCAGACTCCATGGGGTGTCCGTCAGCGATaGTTGCCCGATGCCTCCTCTGAGCTAGGTAGTAGC +
Preference number: 6 (lower is better)
Translates to: RRCQTPWGVRQR*LPDASSELGSS
Trigger: GCTACTACCTAGCTCAGAGGAGGCATCGGGCAATCATCGCTGACGGACACCCCATGGAGTCTGACACCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 72 bp CTATGCCCAGGAACCGCCCATTGGGGGACTGCAGGGTaGTTTTCCCACAATTCCAGTGCACTCGGAAGAAGG +
Preference number: 6 (lower is better)
Translates to: LCPGTAHWGTAG*FSHNSSALGRR
Trigger: CCTTCTTCCGAGTGCACTGGAATTGTGGGAAAATCACCCTGCAGTCCCCCAATGGGCGGTTCCTGGGCATAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 72 bp CATCCTCCCCATCGGACTCAAGATAGCGACCAGAGATaGTGCACTGGAGGGTCCATTTGCCGTTTCGGTGGA +
Preference number: 6 (lower is better)
Translates to: HPPHRTQDSDQR*CTGGSICRFGG
Trigger: TCCACCGAAACGGCAAATGGACCCTCCAGTGCATCATCTCTGGTCGCTATCTTGAGTCCGATGGGGAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 72 bp TGCCCAGTAGAAGATGTGAACCCTGCGGATACAATGTaGCGCCTTCTCCATCACATAGGGCCACGAGTCCTC +
Preference number: 6 (lower is better)
Translates to: CPVEDVNPADTM*RLLHHIGPRVL
Trigger: GAGGACTCGTGGCCCTATGTGATGGAGAAGGCGGCACATTGTATCCGCAGGGTTCACATCTTCTACTGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 72 bp GGAGCAGAGCCCATGCCCAGTAGAAGATGTGAACCCTaGGGATACAATGTGCCGCCTTCTCCATCACATAGG +
Preference number: 6 (lower is better)
Translates to: GAEPMPSRRCEP*GYNVPPSPSHR
Trigger: CCTATGTGATGGAGAAGGCGGCACATTGTATCCGCAGGGTTCACATCTTCTACTGGGCATGGGCTCTGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 72 bp ACTAGTTCTTGGCCTGCCATAGCACACAGTACCATCTaGTTCGCACAGCAGGTAGAGGCCCTGCAAGCTCTT +
Preference number: 6 (lower is better)
Translates to: TSSWPAIAHSTI*FAQQVEALQAL
Trigger: AAGAGCTTGCAGGGCCTCTACCTGCTGTGCGAAGCAGATGGTACTGTGTGCTATGGCAGGCCAAGAACTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 72 bp CTCAGAAGCAGCACACACCTCAGCATCATAGATGACTaGGAGGAACCTCCGAGACTTGGACTTCAGGCTGAC +
Preference number: 6 (lower is better)
Translates to: LRSSTHLSIIDD*EEPPRLGLQAD
Trigger: GTCAGCCTGAAGTCCAAGTCTCGGAGGTTCCTCTCAGTCATCTATGATGCTGAGGTGTGTGCTGCTTCTGAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 72 bp ACCAGAAGGATCCACCCTGTGCCTGAAAGTGATAGATaGCCTGGCGACAGGGCAATAGCTGAATACAGTCAG +
Preference number: 6 (lower is better)
Translates to: TRRIHPVPESDR*PGDRAIAEYSQ
Trigger: CTGACTGTATTCAGCTATTGCCCTGTCGCCAGGGCATCTATCACTTTCAGGCACAGGGTGGATCCTTCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CAA 72 bp AATGTAACAGGAAACCACATTCCTCTAGGCAGGGGATaGCTGCGTCTACCCAGATTCGGCCCACAGTGTGGT +
Preference number: 6 (lower is better)
Translates to: NVTGNHIPLGRG*LRLPRFGPQCG
Trigger: ACCACACTGTGGGCCGAATCTGGGTAGACGCAGCAATCCCCTGCCTAGAGGAATGTGGTTTCCTGTTACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 72 bp TCTTTAGTCGTATCACAGCCTGTGATTCATGTTCATTaGTCACCAGGAGCTCCCAGGTCTGTCTCCTGCCCA +
Preference number: 6 (lower is better)
Translates to: SLVVSQPVIHVH*SPGAPRSVSCP
Trigger: TGGGCAGGAGACAGACCTGGGAGCTCCTGGTGAGCAATGAACATGAATCACAGGCTGTGATACGACTAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 72 bp GCCTGGGAGTCCACATATGGTAAGCTGAAAGAACCCTaGAGTTGCAGAATACATCCTCCCCATCGGACTCAA +
Preference number: 6 (lower is better)
Translates to: AWESTYGKLKEP*SCRIHPPHRTQ
Trigger: TTGAGTCCGATGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGGACTCCCAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 72 bp TTTTCCCCAAGGGCGGAAGGTGCCAAAGGATGTTATTaGCCAGAAGGATCCACCCTGTGCCTGAAAGTGATA +
Preference number: 6 (lower is better)
Translates to: FSPRAEGAKGCY*PEGSTLCLKVI
Trigger: TATCACTTTCAGGCACAGGGTGGATCCTTCTGGTCAATAACATCCTTTGGCACCTTCCGCCCTTGGGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CAA 72 bp ATTTTCCCCAAGGGCGGAAGGTGCCAAAGGATGTTATaGACCAGAAGGATCCACCCTGTGCCTGAAAGTGAT +
Preference number: 6 (lower is better)
Translates to: IFPKGGRCQRML*TRRIHPVPESD
Trigger: ATCACTTTCAGGCACAGGGTGGATCCTTCTGGTCAATAACATCCTTTGGCACCTTCCGCCCTTGGGGAAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS GCA 72 bp GAGTCCACATATGGTAAGCTGAAAGAACCCTGGAGTTaGAGAATACATCCTCCCCATCGGACTCAAGATAGC +
Preference number: 6 (lower is better)
Translates to: ESTYGKLKEPWS*RIHPPHRTQDS
Trigger: GCTATCTTGAGTCCGATGGGGAGGATGTATTCTGCAACTCCAGGGTTCTTTCAGCTTACCATATGTGGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS CCA 72 bp AGTTGCAAGGTAGGAGTCTCACTGTCACATTCGTACTaGAACAAGGACATCTGGGTCAAACGCTCAGAAGCA +
Preference number: 6 (lower is better)
Translates to: SCKVGVSLSHSY*NKDIWVKRSEA
Trigger: TGCTTCTGAGCGTTTGACCCAGATGTCCTTGTTCCAGTACGAATGTGACAGTGAGACTCCTACCTTGCAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7
CDS TCA 72 bp CTGTCTCCTGCCCAAACTCTTTGCAGAAGCTGTGACTaGACTCTTATATGCTTCAAAGGTGAGGTAGGTTCC +
Preference number: 6 (lower is better)
Translates to: LSPAQTLCRSCD*TLICFKGEVGS
Trigger: GGAACCTACCTCACCTTTGAAGCATATAAGAGTTCAGTCACAGCTTCTGCAAAGAGTTTGGGCAGGAGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031719.7