RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FSCN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025380

Ensembl transcript IDs: ENSMUST00000026445.3

Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGCGGCCGTGTGGCTCTaGCTGCAGCACCCAGCGCCC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEAAVWL*LQHPAP
Trigger: GGGCGCTGGGTGCTGCAGTCAGAGCCACACGGCCGC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGGAACAGCACGGCAGTaGCCTGCCCCGGGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEGTARQ*PAPGQA
Trigger: AGCCTGACCCGGGGCAGGGCACTGCCGTGCTGTTCC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCGGTTGGTGTCCAGCTaGTTGGAGCCCCGGCGGTGG +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCERLVSS*LEPRRW
Trigger: CCACCGCCGGGGCTCCAACCAGCTGGACACCAACCG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGCAGGTACTTGCCGCTaGGGGCTCGGATGGCCAGAC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEAGTCR*GLGWPD
Trigger: GTCTGGCCATCCGAGCCCTCAGCGGCAAGTACCTGC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGAGCACGCAGGAGCCCTaGGGCTCCTCCACGCAGGTA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCESTQEP*GSSTQV
Trigger: TACCTGCGTGGAGGAGCCTCAGGGCTCCTGCGTGCT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCAGCGCCCATCAGGCTaGGGCAAGACCAGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEQRPSG*GKTRKR
Trigger: CCGCTTCCTGGTCTTGCCGCAGCCTGATGGGCGCTG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGAGCAGGCCCCACAGGTaGCAGGTACCGGCCGTCACA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCESRPHR*QVPAVT
Trigger: TGTGACGGCCGGTACCTGGCACCTGTGGGGCCTGCT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTGGTGTCCAGCTGGTTaGAGCCCCGGCGGTGGCACA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEWCPAG*SPGGGT
Trigger: TGTGCCACCGCCGGGGCTCCAACCAGCTGGACACCA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCAGTCACGGCCCGGCTaGTCCATCTCACAGGCCACA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEQSRPG*SISQAT
Trigger: TGTGGCCTGTGAGATGGATCAGCCGGGCCGTGACTG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGGCCGTCACAGTCCTTaGAGGCCAGCTTGCCTGCCT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEGRHSP*RPACLP
Trigger: AGGCAGGCAAGCTGGCCTTCAAGGACTGTGACGGCC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGAATGCCCCCATGGGTaGCCAAGGTCCAGTAGCCCC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEECPHG*PRSSSP
Trigger: GGGGCTACTGGACCTTGGTCACCCATGGGGGCATTC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTGTGTGGCTGTGGCCTaGATGCCCCCATGGGTGACC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCECVAVA*MPPWVT
Trigger: GGTCACCCATGGGGGCATTCAGGCCACAGCCACACA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCCGTGTGGCTCTGACTaGAGCACCCAGCGCCCATCA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEPCGSD*STQRPS
Trigger: TGATGGGCGCTGGGTGCTGCAGTCAGAGCCACACGG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCACAGTCCACAGCTCTaGCGGGGAAATGGCCGTGGC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEHSPQL*RGNGRG
Trigger: GCCACGGCCATTTCCCCGGCAGAGCTGTGGACTGTG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGGGTGGATGGCCAGGTaGACAGTCCACAGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEGWMAR*TVHSSA
Trigger: GGCAGAGCTGTGGACTGTGCACCTGGCCATCCACCC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGAGATCTGCTTCCTCTTaGGGCTGGCTGCGGAGGCGT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCERSASS*GWLRRR
Trigger: ACGCCTCCGCAGCCAGCCTCAAGAGGAAGCAGATCT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCCAGCTTGCCTGCCTTaGACTCCAGCGTGTAGCAGG +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEPACLP*TPACSR
Trigger: CCTGCTACACGCTGGAGTTCAAGGCAGGCAAGCTGG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCAAGGCGGCCATCGCTaGGAAGGTAGCGGCTGTCAT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEQGGHR*EGSGCH
Trigger: ATGACAGCCGCTACCTTCGCAGCGATGGCCGCCTTG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGTTGCTGGCTTTAAGTaGCACCCGCCGGCCATGCCA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEVAGFK*HPPAMP
Trigger: TGGCATGGCCGGCGGGTGGCACTTAAAGCCAGCAAC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCCGGGGAAATGGCCGTaGCAAAGCAGGACAGTCGGT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEPGKWP*QSRTVG
Trigger: ACCGACTGTCCTGCTTTGCCACGGCCATTTCCCCGG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGAGCCTGTGGGTGGATaGCCAGGTGCACAGTCCACA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEEPVGG*PGAQST
Trigger: TGTGGACTGTGCACCTGGCCATCCACCCACAGGCTC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGAAGCCAAAGCTCTCTaGAGTCAGGTAGCGGTCGGC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEEAKAL*SQVAVG
Trigger: GCCGACCGCTACCTGACTGCAGAGAGCTTTGGCTTC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCCTCTTGAGGCTGGCTaGGGAGGCGTTGACCTTGAA +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEPLEAG*GGVDLE
Trigger: TTCAAGGTCAACGCCTCCGCAGCCAGCCTCAAGAGG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGAGATGTAGCGCCGGTTaGCAGCTACCAGCACCACCT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCERCSAG*QLPAPP
Trigger: AGGTGGTGCTGGTAGCTGCCAACCGGCGCTACATCT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGAGACTTGTGTGGCTGTaGCCTGAATGCCCCCATGGG +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCERLVWL*PECPHG
Trigger: CCCATGGGGGCATTCAGGCCACAGCCACACAAGTCT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGATAGGCGCCATCCCTaGAGCTCAAGTGGAAGACGT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEDRRHP*SSSGRR
Trigger: ACGTCTTCCACTTGAGCTTCAGGGATGGCGCCTATC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTCCAGGACCCAGATCTaGTTCCTCTTGAGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCESRTQI*FLLRLA
Trigger: AGCCAGCCTCAAGAGGAAGCAGATCTGGGTCCTGGA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCTGATGGCGGCCAGCTaGCCGTTTTTCTTCATGCAC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCELMAAS*PFFFMH
Trigger: GTGCATGAAGAAAAACGGGCAGCTGGCCGCCATCAG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGACACGCTTCCATGGCTaGCTGTGTACCAGAACCCAC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCETRFHG*LCTRTH
Trigger: GTGGGTTCTGGTACACAGGCAGCCATGGAAGCGTGT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTGGATCTTCAGCACCTaGTGCAGACCGTTGGTTGGC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEWIFST*CRPLVG
Trigger: GCCAACCAACGGTCTGCACCAGGTGCTGAAGATCCA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTACCAGCACCACCTGTaGGTGACTTTGCTCCAGGTC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEYQHHL*VTLLQV
Trigger: GACCTGGAGCAAAGTCACCCACAGGTGGTGCTGGTA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCGTAAGTGGAACGGTTaGTGTCCAGCTGGTTGGAGC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCERKWNG*CPAGWS
Trigger: GCTCCAACCAGCTGGACACCAACCGTTCCACTTACG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCTGCACACGCTTCCATaGCTGCCTGTGTACCAGAAC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCELHTLP*LPVYQN
Trigger: GTTCTGGTACACAGGCAGCCATGGAAGCGTGTGCAG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGGAAGACGTCGTAAGTaGAACGGTTGGTGTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEGRRRK*NGWCPA
Trigger: AGCTGGACACCAACCGTTCCACTTACGACGTCTTCC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCATGTCACCGTCTGCTaGCATCTCATCTTCCTGAAG +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEHVTVC*HLIFLK
Trigger: CTTCAGGAAGATGAGATGGCAGCAGACGGTGACATG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCAGTACCGCCTGCTCTaGAAAATGAGGGTGACTAGT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEQYRLL*KMRVTS
Trigger: ACTAGTCACCCTCATTTTCCAGAGCAGGCGGTACTG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR GCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTCCAGTAGCCCCCAGTaGTGGAATAGAAAGTACACT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCESSSPQ*WNRKYT
Trigger: AGTGTACTTTCTATTCCAGCACTGGGGGCTACTGGA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTTAACAAGGCCAAACTaGATCTTCAGCACCTGGTGC +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCELTRPN*IFSTWC
Trigger: GCACCAGGTGCTGAAGATCCAGTTTGGCCTTGTTAA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTTCATCCTGATTGGCTaGGACATTGATTCCTTGCCT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEFILIG*DIDSLP
Trigger: AGGCAAGGAATCAATGTCTCAGCCAATCAGGATGAA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR TCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCCCAGTTCTTCATCCTaGTTGGCTGAGACATTGATT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEPSSSS*LAETLI
Trigger: AATCAATGTCTCAGCCAATCAGGATGAAGAACTGGG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGAGTAGCCCCCAGTGCTaGAATAGAAAGTACACTTCT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCESSPQC*NRKYTS
Trigger: AGAAGTGTACTTTCTATTCCAGCACTGGGGGCTACT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTTTCAAACATGGTGTTaGCAGAGACTTGTGTGGCTG +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEFQTWC*QRLVWL
Trigger: CAGCCACACAAGTCTCTGCCAACACCATGTTTGAAA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CCA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCACTTCTTTGTCTCCTaGTCGATTTGCATCAGGAAT +
Preference number: 4 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEHFFVS*SICIRN
Trigger: ATTCCTGATGCAAATCGACCAGGAGACAAAGAAGTG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp GAGAGCTTCCCCCACAGGCAGGTCTGCATCAGCACGCAGGAGCCCTaGGGCTCCTCCACGCAGGTACTTGCCGCTGAGGGCTCGGATGGC +
Preference number: 5 (lower is better)
Translates to: ESFPHRQVCISTQEP*GSSTQVLAAEGSDG
Trigger: GCCATCCGAGCCCTCAGCGGCAAGTACCTGCGTGGAGGAGCCTCAGGGCTCCTGCGTGCTGATGCAGACCTGCCTGTGGGGGAAGCTCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp CAGCACGCAGGAGCCCTGAGGCTCCTCCACGCAGGTACTTGCCGCTaGGGGCTCGGATGGCCAGACGGCCACGCTCTCGGAACTCAAAGA +
Preference number: 5 (lower is better)
Translates to: QHAGALRLLHAGTCR*GLGWPDGHALGTQR
Trigger: TCTTTGAGTTCCGAGAGCGTGGCCGTCTGGCCATCCGAGCCCTCAGCGGCAAGTACCTGCGTGGAGGAGCCTCAGGGCTCCTGCGTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp AGCACGGCAGTGCCCTGCCCCGGGTCAGGCTCCAGGACCCAGATCTaGTTCCTCTTGAGGCTGGCTGCGGAGGCGTTGACCTTGAAGCCA +
Preference number: 5 (lower is better)
Translates to: STAVPCPGSGSRTQI*FLLRLAAEALTLKP
Trigger: TGGCTTCAAGGTCAACGCCTCCGCAGCCAGCCTCAAGAGGAAGCAGATCTGGGTCCTGGAGCCTGACCCGGGGCAGGGCACTGCCGTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp AGTCGGTCCTCAATGCCACCGAAGAAGCGGCCGTGTGGCTCTGACTaGAGCACCCAGCGCCCATCAGGCTGCGGCAAGACCAGGAAGCGG +
Preference number: 5 (lower is better)
Translates to: SRSSMPPKKRPCGSD*STQRPSGCGKTRKR
Trigger: CCGCTTCCTGGTCTTGCCGCAGCCTGATGGGCGCTGGGTGCTGCAGTCAGAGCCACACGGCCGCTTCTTCGGTGGCATTGAGGACCGACT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp GGACAGTCGGTCCTCAATGCCACCGAAGAAGCGGCCGTGTGGCTCTaGCTGCAGCACCCAGCGCCCATCAGGCTGCGGCAAGACCAGGAA +
Preference number: 5 (lower is better)
Translates to: GQSVLNATEEAAVWL*LQHPAPIRLRQDQE
Trigger: TTCCTGGTCTTGCCGCAGCCTGATGGGCGCTGGGTGCTGCAGTCAGAGCCACACGGCCGCTTCTTCGGTGGCATTGAGGACCGACTGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp GGTCGAAGAGTTCATCCTTGCTGGGCCTCGTGTTGCGACCAGCCTTaGGTGTGCCAGCAGGCCCCACAGGTGCCAGGTACCGGCCGTCAC +
Preference number: 5 (lower is better)
Translates to: GRRVHPCWASCCDQP*VCQQAPQVPGTGRH
Trigger: GTGACGGCCGGTACCTGGCACCTGTGGGGCCTGCTGGCACACTCAAGGCTGGTCGCAACACGAGGCCCAGCAAGGATGAACTCTTCGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CCA 90 bp CGTAGCGCCGACGGCTCACACTCAGCAAATGAGCCTGTGGGTGGATaGCCAGGTGCACAGTCCACAGCTCTGCCGGGGAAATGGCCGTGG +
Preference number: 5 (lower is better)
Translates to: RSADGSHSANEPVGG*PGAQSTALPGKWPW
Trigger: CCACGGCCATTTCCCCGGCAGAGCTGTGGACTGTGCACCTGGCCATCCACCCACAGGCTCATTTGCTGAGTGTGAGCCGTCGGCGCTACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp CCACACGTCCATCTTCTTCTGCTGACAGGTAGCGGCCTAGGTGACTaGTTCGGAACAGCACGGCAGTGCCCTGCCCCGGGTCAGGCTCCA +
Preference number: 5 (lower is better)
Translates to: PHVHLLLLTGSGLGD*FGTARQCPAPGQAP
Trigger: TGGAGCCTGACCCGGGGCAGGGCACTGCCGTGCTGTTCCGAAGCAGTCACCTAGGCCGCTACCTGTCAGCAGAAGAAGATGGACGTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTTGGTGTCCAGCTGGTaGGAGCCCCGGCGGTGGCAC +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCELVSSW*EPRRWH
Trigger: GTGCCACCGCCGGGGCTCCAACCAGCTGGACACCAA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp CCATCAGGCTGCGGCAAGACCAGGAAGCGGCAGTCACGGCCCGGCTaGTCCATCTCACAGGCCACACGTCCATCTTCTTCTGCTGACAGG +
Preference number: 5 (lower is better)
Translates to: PSGCGKTRKRQSRPG*SISQATRPSSSADR
Trigger: CCTGTCAGCAGAAGAAGATGGACGTGTGGCCTGTGAGATGGATCAGCCGGGCCGTGACTGCCGCTTCCTGGTCTTGCCGCAGCCTGATGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CCA 90 bp CAGGTGCACGTAGCGCCGACGGCTCACACTCAGCAAATGAGCCTGTaGGTGGATGGCCAGGTGCACAGTCCACAGCTCTGCCGGGGAAAT +
Preference number: 5 (lower is better)
Translates to: QVHVAPTAHTQQMSL*VDGQVHSPQLCRGN
Trigger: ATTTCCCCGGCAGAGCTGTGGACTGTGCACCTGGCCATCCACCCACAGGCTCATTTGCTGAGTGTGAGCCGTCGGCGCTACGTGCACCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCGGCCGTCACAGTCCTaGAAGGCCAGCTTGCCTGCC +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCERPSQS*KASLPA
Trigger: GGCAGGCAAGCTGGCCTTCAAGGACTGTGACGGCCG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGTGTTGCGACCAGCCTaGAGTGTGCCAGCAGGCCCC +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEVLRPA*SVPAGP
Trigger: GGGGCCTGCTGGCACACTCAAGGCTGGTCGCAACAC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCTGGCTGCGGAGGCGTaGACCTTGAAGCCAAAGCTC +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCELAAEA*TLKPKL
Trigger: GAGCTTTGGCTTCAAGGTCAACGCCTCCGCAGCCAG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTTGCTGGGCCTCGTGTaGCGACCAGCCTTGAGTGTG +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCELLGLV*RPALSV
Trigger: CACACTCAAGGCTGGTCGCAACACGAGGCCCAGCAA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGTCCTTGAAGGCCAGCTaGCCTGCCTTGAACTCCAGC +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCESLKAS*PALNSS
Trigger: GCTGGAGTTCAAGGCAGGCAAGCTGGCCTTCAAGGA...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp GCTCTCGGAACTCAAAGAGGAAATCTTCCGCCAAGTCACCGTCGCTaGACACGCTTCCATGGCTGCCTGTGTACCAGAACCCACCTCCAC +
Preference number: 5 (lower is better)
Translates to: ALGTQRGNLPPSHRR*TRFHGCLCTRTHLH
Trigger: GTGGAGGTGGGTTCTGGTACACAGGCAGCCATGGAAGCGTGTGCAGCGACGGTGACTTGGCGGAAGATTTCCTCTTTGAGTTCCGAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGCACCTGTGGGTGACTTaGCTCCAGGTCGAAGAGTTC +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEHLWVT*LQVEEF
Trigger: GAACTCTTCGACCTGGAGCAAAGTCACCCACAGGTG...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGGGTGTTGGCAGAGACTaGTGTGGCTGTGGCCTGAAT +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEGVGRD*CGCGLN
Trigger: ATTCAGGCCACAGCCACACAAGTCTCTGCCAACACC...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp CTTGAGGCTGGCTGCGGAGGCGTTGACCTTGAAGCCAAAGCTCTCTaGAGTCAGGTAGCGGTCGGCATCGTTAACAAGGCCAAACTGGAT +
Preference number: 5 (lower is better)
Translates to: LEAGCGGVDLEAKAL*SQVAVGIVNKAKLD
Trigger: ATCCAGTTTGGCCTTGTTAACGATGCCGACCGCTACCTGACTGCAGAGAGCTTTGGCTTCAAGGTCAACGCCTCCGCAGCCAGCCTCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp TGTTGGCAGAGACTTGTGTGGCTGTGGCCTGAATGCCCCCATGGGTaGCCAAGGTCCAGTAGCCCCCAGTGCTGGAATAGAAAGTACACT +
Preference number: 5 (lower is better)
Translates to: CWQRLVWLWPECPHG*PRSSSPQCWNRKYT
Trigger: AGTGTACTTTCTATTCCAGCACTGGGGGCTACTGGACCTTGGTCACCCATGGGGGCATTCAGGCCACAGCCACACAAGTCTCTGCCAACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGACCAGGAGGGGTCGATaGATGAGCTTGAGGGTAAAT +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCETRRGR*MSLRVN
Trigger: ATTTACCCTCAAGCTCATCAATCGACCCCTCCTGGT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp GTAAATAGCTCGTCCTCGCCCACAAAGTCGCTGATGGCGGCCAGCTaGCCGTTTTTCTTCATGCACACAAAACGCCCGTTGCTGGCTTTA +
Preference number: 5 (lower is better)
Translates to: VNSSSSPTKSLMAAS*PFFFMHTKRPLLAL
Trigger: TAAAGCCAGCAACGGGCGTTTTGTGTGCATGAAGAAAAACGGGCAGCTGGCCGCCATCAGCGACTTTGTGGGCGAGGACGAGCTATTTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp CACACAAAACGCCCGTTGCTGGCTTTAAGTGCCACCCGCCGGCCATaGCATTCTATTTCAAACATGGTGTTGGCAGAGACTTGTGTGGCT +
Preference number: 5 (lower is better)
Translates to: HTKRPLLALSATRRP*HSISNMVLAETCVA
Trigger: AGCCACACAAGTCTCTGCCAACACCATGTTTGAAATAGAATGGCATGGCCGGCGGGTGGCACTTAAAGCCAGCAACGGGCGTTTTGTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGATTTCAAACATGGTGTaGGCAGAGACTTGTGTGGCT +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCEISNMV*AETCVA
Trigger: AGCCACACAAGTCTCTGCCAACACCATGTTTGAAAT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 90 bp CCCGTTTTTCTTCATGCACACAAAACGCCCGTTGCTGGCTTTAAGTaGCACCCGCCGGCCATGCCATTCTATTTCAAACATGGTGTTGGC +
Preference number: 5 (lower is better)
Translates to: PVFLHAHKTPVAGFK*HPPAMPFYFKHGVG
Trigger: GCCAACACCATGTTTGAAATAGAATGGCATGGCCGGCGGGTGGCACTTAAAGCCAGCAACGGGCGTTTTGTGTGCATGAAGAAAAACGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS-3UTR CAA 90 bp CGCAACAAAGGTTTAATGCTGGGTCGGTGGGCTCTGGGGTTGACCCCCTGTGAGAGAAAGTACACTTCTTaGTCTCCTGGTCGATTTGCA +
Preference number: 5 (lower is better)
Translates to: RNKGLMLGRWALGLTPCERKYTS*SPGRFA
Trigger: TGCAAATCGACCAGGAGACAAAGAAGTGTACTTTCT...CTCACAGGGGGTCAACCCCAGAGCCCACCGACCCAGCATTAAACCTTTGTTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp GGAATGTCTCATGACCCAGTTCTTCATCCTGATTGGCTGAGACATTaGTTCCTTGCCTCACAGAGATGTAGCGCCGGTTGGCAGCTACCA +
Preference number: 5 (lower is better)
Translates to: GMSHDPVLHPDWLRH*FLASQRCSAGWQLP
Trigger: TGGTAGCTGCCAACCGGCGCTACATCTCTGTGAGGCAAGGAATCAATGTCTCAGCCAATCAGGATGAAGAACTGGGTCATGAGACATTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 90 bp TTGCATCAGGAATGTCTCATGACCCAGTTCTTCATCCTGATTGGCTaGGACATTGATTCCTTGCCTCACAGAGATGTAGCGCCGGTTGGC +
Preference number: 5 (lower is better)
Translates to: LHQECLMTQFFILIG*DIDSLPHRDVAPVG
Trigger: GCCAACCGGCGCTACATCTCTGTGAGGCAAGGAATCAATGTCTCAGCCAATCAGGATGAAGAACTGGGTCATGAGACATTCCTGATGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 72 bp GCACGCAGGAGCCCTGAGGCTCCTCCACGCAGGTACTaGCCGCTGAGGGCTCGGATGGCCAGACGGCCACGC +
Preference number: 6 (lower is better)
Translates to: ARRSPEAPPRRY*PLRARMARRPR
Trigger: GCGTGGCCGTCTGGCCATCCGAGCCCTCAGCGGCAAGTACCTGCGTGGAGGAGCCTCAGGGCTCCTGCGTGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 72 bp GGAGCCCTGAGGCTCCTCCACGCAGGTACTTGCCGCTaGGGGCTCGGATGGCCAGACGGCCACGCTCTCGGA +
Preference number: 6 (lower is better)
Translates to: GALRLLHAGTCR*GLGWPDGHALG
Trigger: TCCGAGAGCGTGGCCGTCTGGCCATCCGAGCCCTCAGCGGCAAGTACCTGCGTGGAGGAGCCTCAGGGCTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp TGTGGCTCTGACTGCAGCACCCAGCGCCCATCAGGCTaGGGCAAGACCAGGAAGCGGCAGTCACGGCCCGGC +
Preference number: 6 (lower is better)
Translates to: CGSDCSTQRPSG*GKTRKRQSRPG
Trigger: GCCGGGCCGTGACTGCCGCTTCCTGGTCTTGCCGCAGCCTGATGGGCGCTGGGTGCTGCAGTCAGAGCCACA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp TCTGCATCAGCACGCAGGAGCCCTGAGGCTCCTCCACGCAGGTACTaGCCGCTGAGGGCTCGGATGGCCAGACGGCCACGCTCTCGGAAC +
Preference number: 6 (lower is better)
Translates to: SASARRSPEAPPRRY*PLRARMARRPRSRN
Trigger: GTTCCGAGAGCGTGGCCGTCTGGCCATCCGAGCCCTCAGCGGCAAGTACCTGCGTGGAGGAGCCTCAGGGCTCCTGCGTGCTGATGCAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp AGCGGCCTAGGTGACTGCTTCGGAACAGCACGGCAGTaGCCTGCCCCGGGTCAGGCTCCAGGACCCAGATCT +
Preference number: 6 (lower is better)
Translates to: SGLGDCFGTARQ*PAPGQAPGPRS
Trigger: AGATCTGGGTCCTGGAGCCTGACCCGGGGCAGGGCACTGCCGTGCTGTTCCGAAGCAGTCACCTAGGCCGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CCA 72 bp GAACGGTTGGTGTCCAGCTGGTTGGAGCCCCGGCGGTaGCACACAAAGCCATCCAGGCCACGCAGCACCAGG +
Preference number: 6 (lower is better)
Translates to: ERLVSSWLEPRR*HTKPSRPRSTR
Trigger: CCTGGTGCTGCGTGGCCTGGATGGCTTTGTGTGCCACCGCCGGGGCTCCAACCAGCTGGACACCAACCGTTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 72 bp GTCCTCAATGCCACCGAAGAAGCGGCCGTGTGGCTCTaGCTGCAGCACCCAGCGCCCATCAGGCTGCGGCAA +
Preference number: 6 (lower is better)
Translates to: VLNATEEAAVWL*LQHPAPIRLRQ
Trigger: TTGCCGCAGCCTGATGGGCGCTGGGTGCTGCAGTCAGAGCCACACGGCCGCTTCTTCGGTGGCATTGAGGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp TCAATGCCACCGAAGAAGCGGCCGTGTGGCTCTGACTaGAGCACCCAGCGCCCATCAGGCTGCGGCAAGACC +
Preference number: 6 (lower is better)
Translates to: SMPPKKRPCGSD*STQRPSGCGKT
Trigger: GGTCTTGCCGCAGCCTGATGGGCGCTGGGTGCTGCAGTCAGAGCCACACGGCCGCTTCTTCGGTGGCATTGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp AGGTCGAAGAGTTCATCCTTGCTGGGCCTCGTGTTGCGACCAGCCTaGAGTGTGCCAGCAGGCCCCACAGGTGCCAGGTACCGGCCGTCA +
Preference number: 6 (lower is better)
Translates to: RSKSSSLLGLVLRPA*SVPAGPTGARYRPS
Trigger: TGACGGCCGGTACCTGGCACCTGTGGGGCCTGCTGGCACACTCAAGGCTGGTCGCAACACGAGGCCCAGCAAGGATGAACTCTTCGACCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp CATCTTCTTCTGCTGACAGGTAGCGGCCTAGGTGACTaGTTCGGAACAGCACGGCAGTGCCCTGCCCCGGGT +
Preference number: 6 (lower is better)
Translates to: HLLLLTGSGLGD*FGTARQCPAPG
Trigger: ACCCGGGGCAGGGCACTGCCGTGCTGTTCCGAAGCAGTCACCTAGGCCGCTACCTGTCAGCAGAAGAAGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CCA 72 bp GTAGCGCCGACGGCTCACACTCAGCAAATGAGCCTGTaGGTGGATGGCCAGGTGCACAGTCCACAGCTCTGC +
Preference number: 6 (lower is better)
Translates to: VAPTAHTQQMSL*VDGQVHSPQLC
Trigger: GCAGAGCTGTGGACTGTGCACCTGGCCATCCACCCACAGGCTCATTTGCTGAGTGTGAGCCGTCGGCGCTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CCA 72 bp AGACGTCGTAAGTGGAACGGTTGGTGTCCAGCTGGTTaGAGCCCCGGCGGTGGCACACAAAGCCATCCAGGC +
Preference number: 6 (lower is better)
Translates to: RRRKWNGWCPAG*SPGGGTQSHPG
Trigger: GCCTGGATGGCTTTGTGTGCCACCGCCGGGGCTCCAACCAGCTGGACACCAACCGTTCCACTTACGACGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CCA 72 bp TCTTCCGCCAAGTCACCGTCGCTGCACACGCTTCCATaGCTGCCTGTGTACCAGAACCCACCTCCACGGCCT +
Preference number: 6 (lower is better)
Translates to: SSAKSPSLHTLP*LPVYQNPPPRP
Trigger: AGGCCGTGGAGGTGGGTTCTGGTACACAGGCAGCCATGGAAGCGTGTGCAGCGACGGTGACTTGGCGGAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 72 bp AGTTCATCCTTGCTGGGCCTCGTGTTGCGACCAGCCTaGAGTGTGCCAGCAGGCCCCACAGGTGCCAGGTAC +
Preference number: 6 (lower is better)
Translates to: SSSLLGLVLRPA*SVPAGPTGARY
Trigger: GTACCTGGCACCTGTGGGGCCTGCTGGCACACTCAAGGCTGGTCGCAACACGAGGCCCAGCAAGGATGAACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 72 bp TGCGGCAAGACCAGGAAGCGGCAGTCACGGCCCGGCTaGTCCATCTCACAGGCCACACGTCCATCTTCTTCT +
Preference number: 6 (lower is better)
Translates to: CGKTRKRQSRPG*SISQATRPSSS
Trigger: AGAAGAAGATGGACGTGTGGCCTGTGAGATGGATCAGCCGGGCCGTGACTGCCGCTTCCTGGTCTTGCCGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CCA 72 bp GACGGCTCACACTCAGCAAATGAGCCTGTGGGTGGATaGCCAGGTGCACAGTCCACAGCTCTGCCGGGGAAA +
Preference number: 6 (lower is better)
Translates to: DGSHSANEPVGG*PGAQSTALPGK
Trigger: TTTCCCCGGCAGAGCTGTGGACTGTGCACCTGGCCATCCACCCACAGGCTCATTTGCTGAGTGTGAGCCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 72 bp TCCAGGTCGAAGAGTTCATCCTTGCTGGGCCTCGTGTaGCGACCAGCCTTGAGTGTGCCAGCAGGCCCCACA +
Preference number: 6 (lower is better)
Translates to: SRSKSSSLLGLV*RPALSVPAGPT
Trigger: TGTGGGGCCTGCTGGCACACTCAAGGCTGGTCGCAACACGAGGCCCAGCAAGGATGAACTCTTCGACCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp GATGTAGCGCCGGTTGGCAGCTACCAGCACCACCTGTGGGTGACTTaGCTCCAGGTCGAAGAGTTCATCCTTGCTGGGCCTCGTGTTGCG +
Preference number: 6 (lower is better)
Translates to: DVAPVGSYQHHLWVT*LQVEEFILAGPRVA
Trigger: CGCAACACGAGGCCCAGCAAGGATGAACTCTTCGACCTGGAGCAAAGTCACCCACAGGTGGTGCTGGTAGCTGCCAACCGGCGCTACATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 72 bp CCGGTTGGCAGCTACCAGCACCACCTGTGGGTGACTTaGCTCCAGGTCGAAGAGTTCATCCTTGCTGGGCCT +
Preference number: 6 (lower is better)
Translates to: PVGSYQHHLWVT*LQVEEFILAGP
Trigger: AGGCCCAGCAAGGATGAACTCTTCGACCTGGAGCAAAGTCACCCACAGGTGGTGCTGGTAGCTGCCAACCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 72 bp AAGCCATCCAGGCCACGCAGCACCAGGAGGGGTCGATaGATGAGCTTGAGGGTAAATAGCTCGTCCTCGCCC +
Preference number: 6 (lower is better)
Translates to: KPSRPRSTRRGR*MSLRVNSSSSP
Trigger: GGGCGAGGACGAGCTATTTACCCTCAAGCTCATCAATCGACCCCTCCTGGTGCTGCGTGGCCTGGATGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp AAGCCATCCAGGCCACGCAGCACCAGGAGGGGTCGATTGATGAGCTaGAGGGTAAATAGCTCGTCCTCGCCCACAAAGTCGCTGATGGCG +
Preference number: 6 (lower is better)
Translates to: KPSRPRSTRRGRLMS*RVNSSSSPTKSLMA
Trigger: CGCCATCAGCGACTTTGTGGGCGAGGACGAGCTATTTACCCTCAAGCTCATCAATCGACCCCTCCTGGTGCTGCGTGGCCTGGATGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp TGGCACACAAAGCCATCCAGGCCACGCAGCACCAGGAGGGGTCGATaGATGAGCTTGAGGGTAAATAGCTCGTCCTCGCCCACAAAGTCG +
Preference number: 6 (lower is better)
Translates to: WHTKPSRPRSTRRGR*MSLRVNSSSSPTKS
Trigger: CGACTTTGTGGGCGAGGACGAGCTATTTACCCTCAAGCTCATCAATCGACCCCTCCTGGTGCTGCGTGGCCTGGATGGCTTTGTGTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 72 bp AGACTTGTGTGGCTGTGGCCTGAATGCCCCCATGGGTaGCCAAGGTCCAGTAGCCCCCAGTGCTGGAATAGA +
Preference number: 6 (lower is better)
Translates to: RLVWLWPECPHG*PRSSSPQCWNR
Trigger: TCTATTCCAGCACTGGGGGCTACTGGACCTTGGTCACCCATGGGGGCATTCAGGCCACAGCCACACAAGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp TCGTCCTCGCCCACAAAGTCGCTGATGGCGGCCAGCTaGCCGTTTTTCTTCATGCACACAAAACGCCCGTTG +
Preference number: 6 (lower is better)
Translates to: SSSPTKSLMAAS*PFFFMHTKRPL
Trigger: CAACGGGCGTTTTGTGTGCATGAAGAAAAACGGGCAGCTGGCCGCCATCAGCGACTTTGTGGGCGAGGACGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 72 bp AGCTGCCCGTTTTTCTTCATGCACACAAAACGCCCGTaGCTGGCTTTAAGTGCCACCCGCCGGCCATGCCAT +
Preference number: 6 (lower is better)
Translates to: SCPFFFMHTKRP*LALSATRRPCH
Trigger: ATGGCATGGCCGGCGGGTGGCACTTAAAGCCAGCAACGGGCGTTTTGTGTGCATGAAGAAAAACGGGCAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp ATGGCGGCCAGCTGCCCGTTTTTCTTCATGCACACAAAACGCCCGTaGCTGGCTTTAAGTGCCACCCGCCGGCCATGCCATTCTATTTCA +
Preference number: 6 (lower is better)
Translates to: MAASCPFFFMHTKRP*LALSATRRPCHSIS
Trigger: TGAAATAGAATGGCATGGCCGGCGGGTGGCACTTAAAGCCAGCAACGGGCGTTTTGTGTGCATGAAGAAAAACGGGCAGCTGGCCGCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp CGCCCGTTGCTGGCTTTAAGTGCCACCCGCCGGCCATaGCATTCTATTTCAAACATGGTGTTGGCAGAGACT +
Preference number: 6 (lower is better)
Translates to: RPLLALSATRRP*HSISNMVLAET
Trigger: AGTCTCTGCCAACACCATGTTTGAAATAGAATGGCATGGCCGGCGGGTGGCACTTAAAGCCAGCAACGGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp ACTCAAAGAGGAAATCTTCCGCCAAGTCACCGTCGCTaGACACGCTTCCATGGCTGCCTGTGTACCAGAACC +
Preference number: 6 (lower is better)
Translates to: TQRGNLPPSHRR*TRFHGCLCTRT
Trigger: GGTTCTGGTACACAGGCAGCCATGGAAGCGTGTGCAGCGACGGTGACTTGGCGGAAGATTTCCTCTTTGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS GCA 72 bp CTTCATGCACACAAAACGCCCGTTGCTGGCTTTAAGTaGCACCCGCCGGCCATGCCATTCTATTTCAAACAT +
Preference number: 6 (lower is better)
Translates to: LHAHKTPVAGFK*HPPAMPFYFKH
Trigger: ATGTTTGAAATAGAATGGCATGGCCGGCGGGTGGCACTTAAAGCCAGCAACGGGCGTTTTGTGTGCATGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp CCAAGGTCCAGTAGCCCCCAGTGCTGGAATAGAAAGTACACTTCTTaGTCTCCTGGTCGATTTGCATCAGGAATGTCTCATGACCCAGTT +
Preference number: 6 (lower is better)
Translates to: PRSSSPQCWNRKYTS*SPGRFASGMSHDPV
Trigger: AACTGGGTCATGAGACATTCCTGATGCAAATCGACCAGGAGACAAAGAAGTGTACTTTCTATTCCAGCACTGGGGGCTACTGGACCTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 90 bp CCCAGTGCTGGAATAGAAAGTACACTTCTTTGTCTCCTGGTCGATTaGCATCAGGAATGTCTCATGACCCAGTTCTTCATCCTGATTGGC +
Preference number: 6 (lower is better)
Translates to: PSAGIESTLLCLLVD*HQECLMTQFFILIG
Trigger: GCCAATCAGGATGAAGAACTGGGTCATGAGACATTCCTGATGCAAATCGACCAGGAGACAAAGAAGTGTACTTTCTATTCCAGCACTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS TCA 72 bp GAATGTCTCATGACCCAGTTCTTCATCCTGATTGGCTaGGACATTGATTCCTTGCCTCACAGAGATGTAGCG +
Preference number: 6 (lower is better)
Translates to: ECLMTQFFILIG*DIDSLPHRDVA
Trigger: CGCTACATCTCTGTGAGGCAAGGAATCAATGTCTCAGCCAATCAGGATGAAGAACTGGGTCATGAGACATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3
CDS CAA 72 bp AGTAGCCCCCAGTGCTGGAATAGAAAGTACACTTCTTaGTCTCCTGGTCGATTTGCATCAGGAATGTCTCAT +
Preference number: 6 (lower is better)
Translates to: SSPQCWNRKYTS*SPGRFASGMSH
Trigger: ATGAGACATTCCTGATGCAAATCGACCAGGAGACAAAGAAGTGTACTTTCTATTCCAGCACTGGGGGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026445.3