RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FSCN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029581

Ensembl transcript IDs: ENSMUST00000031565.15, ENSMUST00000198017.5

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTaGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCAGGAG +
Preference number: 1 (lower is better)
Translates to: SGFLPPRSPEVSGKT*STNHRARAGVVRQE
Trigger: CTCCTGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAGCCGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR GCA 90 bp GGGAAAAGGAATGAGGTGGGTGAGAGGCCCGCCCCTTCCAGAATGTaGAGGAGCGACACGGAGTGCCACCTAGCTAGCTTTGAGTCAAAG +
Preference number: 1 (lower is better)
Translates to: GKRNEVGERPAPSRM*RSDTECHLASFESK
Trigger: CTTTGACTCAAAGCTAGCTAGGTGGCACTCCGTGTCGCTCCTGCACATTCTGGAAGGGGCGGGCCTCTCACCCACCTCATTCCTTTTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR GCA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTaGCTTCCAGCCAAGATCCAGAAAAACACTTGTGGGCAAGGTTGG +
Preference number: 1 (lower is better)
Translates to: FESKSQAQTLQDGTD*LPAKIQKNTCGQGW
Trigger: CCAACCTTGCCCACAAGTGTTTTTCTGGATCTTGGCTGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp CCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGAGCCAGAGCTGGGGTaGTCAGGCAGGAGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: PGLPGRGTSGFLPPRSPEEPELG*SGRREG
Trigger: TCCCTCCCTCCTGCCTGACCACCCCAGCTCTGGCTC...CTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp CCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGGAAAAGGAATGAGGTaGGTGAGAGGCCCGCCCCTT +
Preference number: 2 (lower is better)
Translates to: PGLPGRGTSGFLPPRSPEGKGMR*VRGPPL
Trigger: AAGGGGCGGGCCTCTCACCCACCTCATTCCTTTTCC...CTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp CACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGGAGCCAGAGCTGGGGTaGTCAGGCAGGAGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: HIRLSPAQEPRGVWEDVEEPELG*SGRREG
Trigger: TCCCTCCCTCCTGCCTGACCACCCCAGCTCTGGCTC...CTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp GGCCCCCTGAGGTTTACTCCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCGAAAGGCAAGGGGTTTaGCACCTGCTGCAGGGCCAC +
Preference number: 2 (lower is better)
Translates to: GPLRFTPGLPGRGTSGFLERQGV*HLLQGH
Trigger: GTGGCCCTGCAGCAGGTGGCAAACCCCTTGCCTTTC...GAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGGAGTAAACCTCAGGGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp AGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGCTCCTGGGGACAGTCTaGAGCCACCGACCCATGGGG +
Preference number: 2 (lower is better)
Translates to: SPEVSGKTWSTNHRARAGLLGTV*SHRPMG
Trigger: CCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAG...CCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp GGCCCCCTGAGGTTTACTCCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCGCCCCTTCCAGAATGTaGAGGAGCGACACGGAGTGC +
Preference number: 2 (lower is better)
Translates to: GPLRFTPGLPGRGTSGFLAPSRM*RSDTEC
Trigger: GCACTCCGTGTCGCTCCTGCACATTCTGGAAGGGGC...GAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGGAGTAAACCTCAGGGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCAAGGGAGGGAACCCGCTaGGGAGGCAGGGACAGGAGC +
Preference number: 2 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQAREGTR*GGRDRS
Trigger: GCTCCTGTCCCTGCCTCCCCAGCGGGTTCCCTCCCT...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCACTCCTGGGGACAGTCTaGAGCCACCGACCCATGGGG +
Preference number: 2 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQALLGTV*SHRPMG
Trigger: CCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAG...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp CCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGATTTGGTCATTTTTCTaGTTCCAGTCAGGCCAGGGG +
Preference number: 2 (lower is better)
Translates to: PGLPGRGTSGFLPPRSPEIWSFF*FQSGQG
Trigger: CCCCTGGCCTGACTGGAAGCAGAAAAATGACCAAAT...CTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp AGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGCCCCTTCCAGAATGTaGAGGAGCGACACGGAGTGC +
Preference number: 2 (lower is better)
Translates to: SPEVSGKTWSTNHRARAGAPSRM*RSDTEC
Trigger: GCACTCCGTGTCGCTCCTGCACATTCTGGAAGGGGC...CCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp CTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCAAACCAGAGTCCCTCCTaGGGACAGTCTGCAGCCACC +
Preference number: 2 (lower is better)
Translates to: LSPAQEPRGVWEDVEHQSNQSPS*GQSAAT
Trigger: GGTGGCTGCAGACTGTCCCCAGGAGGGACTCTGGTT...TGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR TCA 90 bp TGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCGGGGTCCACAGAGGGTaGCAGCAAGGGCACCGTTTT +
Preference number: 2 (lower is better)
Translates to: CLGRRGAPITEPELGWSGGVHRG*QQGHRF
Trigger: AAAACGGTGCCCTTGCTGTCACCCTCTGTGGACCCC...GCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp TGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCGAAAGGCAAGGGGTTTaGCACCTGCTGCAGGGCCAC +
Preference number: 2 (lower is better)
Translates to: CLGRRGAPITEPELGWSGERQGV*HLLQGH
Trigger: GTGGCCCTGCAGCAGGTGGCAAACCCCTTGCCTTTC...GCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp CTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGGATGGGACAGACTaGCTTCCAGCCAAGATCCAG +
Preference number: 2 (lower is better)
Translates to: LSPAQEPRGVWEDVEHQSQDGTD*LPAKIQ
Trigger: CTGGATCTTGGCTGGAAGGCAGTCTGTCCCATCCTG...TGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp AGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGCCAACAGGGCAGGCTTaGCTAGGGCCTTTCAACAGT +
Preference number: 2 (lower is better)
Translates to: SPEVSGKTWSTNHRARAGPTGQA*LGPFNS
Trigger: ACTGTTGAAAGGCCCTAGGCAAGCCTGCCCTGTTGG...CCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp CTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCATGCCAGAGTTCCCCATaGAAAGAAGGGGACAGAGGG +
Preference number: 2 (lower is better)
Translates to: LSPAQEPRGVWEDVEHQSCQSSP*KEGDRG
Trigger: CCCTCTGTCCCCTTCTTTCCATGGGGAACTCTGGCA...TGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTGCCTTCCAGTCCCGCCAAAAGGCTaGCCTCCAGAGGCTGGGGCC +
Preference number: 2 (lower is better)
Translates to: FESKSQAQTLQDGTDCLPVPPKG*PPEAGA
Trigger: GGCCCCAGCCTCTGGAGGCCAGCCTTTTGGCGGGAC...TGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp AGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGCCAAACACTGCAGGATaGGACAGACTGCCTTCCAGC +
Preference number: 2 (lower is better)
Translates to: SPEVSGKTWSTNHRARAGPNTAG*DRLPSS
Trigger: GCTGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGG...CCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp CACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGATTTGGTCATTTTTCTaGTTCCAGTCAGGCCAGGGG +
Preference number: 2 (lower is better)
Translates to: HIRLSPAQEPRGVWEDVEIWSFF*FQSGQG
Trigger: CCCCTGGCCTGACTGGAAGCAGAAAAATGACCAAAT...CTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR GCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCACCAACAGGGCAGGCTTaGCTAGGGCCTTTCAACAGT +
Preference number: 2 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQAPTGQA*LGPFNS
Trigger: ACTGTTGAAAGGCCCTAGGCAAGCCTGCCCTGTTGG...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp AGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGCCAGAAAAACACTTGTaGGCAAGGTTGGCCATGCCC +
Preference number: 2 (lower is better)
Translates to: SPEVSGKTWSTNHRARAGPEKHL*ARLAMP
Trigger: GGGCATGGCCAACCTTGCCCACAAGTGTTTTTCTGG...CCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR CAA 90 bp AGACTGCCTTCCAGCCAAGATCCAGAAAAACACTTGTGGGCAAGGTaGGCCATGCCCGGCTTCAGTCCCGCCAAAAGGCTGGCCTCCAGA +
Preference number: 2 (lower is better)
Translates to: RLPSSQDPEKHLWAR*AMPGFSPAKRLASR
Trigger: TCTGGAGGCCAGCCTTTTGGCGGGACTGAAGCCGGGCATGGCCAACCTTGCCCACAAGTGTTTTTCTGGATCTTGGCTGGAAGGCAGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR TCA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTGCCTTCCAGGGGTCCACAGAGGGTaGCAGCAAGGGCACCGTTTT +
Preference number: 2 (lower is better)
Translates to: FESKSQAQTLQDGTDCLPGVHRG*QQGHRF
Trigger: AAAACGGTGCCCTTGCTGTCACCCTCTGTGGACCCC...TGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CCA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTGCCTTCCACCAGAAAAACACTTGTaGGCAAGGTTGGCCATGCCC +
Preference number: 2 (lower is better)
Translates to: FESKSQAQTLQDGTDCLPPEKHL*ARLAMP
Trigger: GGGCATGGCCAACCTTGCCCACAAGTGTTTTTCTGG...TGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR CCA 72 bp CTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTaGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTC +
Preference number: 3 (lower is better)
Translates to: LPPRSPEVSGKT*STNHRARAGVV
Trigger: GACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CAA 90 bp GGCCCCCTGAGGTTTACTCCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCACTTGTGGGCAAGGTaGGCCATGCCCGGCTTCAGT +
Preference number: 3 (lower is better)
Translates to: GPLRFTPGLPGRGTSGFLHLWAR*AMPGFS
Trigger: ACTGAAGCCGGGCATGGCCAACCTTGCCCACAAGTG...GAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGGAGTAAACCTCAGGGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR GCA 72 bp GGACAGAGGGAACCAGAGTCCCTCCTGGGGACAGTCTaGAGCCACCGACCCATGGGGAGCAGTGAGTTAGGG +
Preference number: 3 (lower is better)
Translates to: GQREPESLLGTV*SHRPMGSSELG
Trigger: CCCTAACTCACTGCTCCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAGGGACTCTGGTTCCCTCTGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR CCA 72 bp ATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTaGGAAGACGTGGAGCACCAATCACAGAGCCAGAGC +
Preference number: 3 (lower is better)
Translates to: IRLSPAQEPRGV*EDVEHQSQSQS
Trigger: GCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAGCCGGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR GCA 72 bp AATGAGGTGGGTGAGAGGCCCGCCCCTTCCAGAATGTaGAGGAGCGACACGGAGTGCCACCTAGCTAGCTTT +
Preference number: 3 (lower is better)
Translates to: NEVGERPAPSRM*RSDTECHLASF
Trigger: AAAGCTAGCTAGGTGGCACTCCGTGTCGCTCCTGCACATTCTGGAAGGGGCGGGCCTCTCACCCACCTCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR CCA 72 bp AGACTGCCTTCCAGCCAAGATCCAGAAAAACACTTGTaGGCAAGGTTGGCCATGCCCGGCTTCAGTCCCGCC +
Preference number: 3 (lower is better)
Translates to: RLPSSQDPEKHL*ARLAMPGFSPA
Trigger: GGCGGGACTGAAGCCGGGCATGGCCAACCTTGCCCACAAGTGTTTTTCTGGATCTTGGCTGGAAGGCAGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR-3UTR CAA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTGCCTTCCACACTTGTGGGCAAGGTaGGCCATGCCCGGCTTCAGT +
Preference number: 3 (lower is better)
Translates to: FESKSQAQTLQDGTDCLPHLWAR*AMPGFS
Trigger: ACTGAAGCCGGGCATGGCCAACCTTGCCCACAAGTG...TGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR GCA 72 bp AAGATCCAGAAAAACACTTGTGGGCAAGGTTGGCCATaGCCGGCTTCAGTCCCGCCAAAAGGCTGGCCTCCA +
Preference number: 3 (lower is better)
Translates to: KIQKNTCGQGWP*PASVPPKGWPP
Trigger: TGGAGGCCAGCCTTTTGGCGGGACTGAAGCCGGGCATGGCCAACCTTGCCCACAAGTGTTTTTCTGGATCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR TCA 90 bp CCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGCTAGTACTCCCAGAGTaGGGCGGGGTCGATAGTCTC +
Preference number: 4 (lower is better)
Translates to: PGLPGRGTSGFLPPRSPELVLPE*GGVDSL
Trigger: GAGACTATCGACCCCGCCTCACTCTGGGAGTACTAG...CTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR TCA 90 bp CCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGTGCCCGTGGAGTCTTTaGTGTTGTAGGCGCCGTCAT +
Preference number: 4 (lower is better)
Translates to: PGLPGRGTSGFLPPRSPECPWSL*CCRRRH
Trigger: ATGACGGCGCCTACAACATCAAAGACTCCACGGGCA...CTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp CTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCAGCCGGCGACACGCTCTaGGCGAAGCAGGACAGGCGG +
Preference number: 4 (lower is better)
Translates to: LSPAQEPRGVWEDVEHQSAGDTL*AKQDRR
Trigger: CCGCCTGTCCTGCTTCGCGCAGAGCGTGTCGCCGGC...TGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031565.15
CDS-3UTR TCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCAAGCGGAACTCCAGCGTaGAGCCCGTGGCGGGCTCCG +
Preference number: 4 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQASGTPA*SPWRAP
Trigger: CGGAGCCCGCCACGGGCTTCACGCTGGAGTTCCGCT...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031565.15
CDS-3UTR GCA 90 bp AGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGCAGCGGCCGTCGTCGTaGGCCACGACGAGAAAGCGG +
Preference number: 4 (lower is better)
Translates to: SPEVSGKTWSTNHRARAGQRPSS*ATTRKR
Trigger: CCGCTTTCTCGTCGTGGCGCACGACGACGGCCGCTG...CCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031565.15
CDS-3UTR GCA 90 bp AACCAGAGTCCCTCCTGGGGACAGTCTGCAGCCACCGACCCATGGGGAGCAGTGGAGTTCCGAGTCCCCTaGTGTCTCCACCGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: NQSPSWGQSAATDPWGAVEFRVP*CLHRGG
Trigger: GCCGCCTCGGTGGAGACAGCAGGGGACTCGGAACTC...CACTGCTCCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAGGGACTCTGGTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp CACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGGCCTCATCGGGAGGTTaGTCCAGCGTCCAGATCTGC +
Preference number: 4 (lower is better)
Translates to: HIRLSPAQEPRGVWEDVEASSGG*SSVQIC
Trigger: GCAGATCTGGACGCTGGAGCAACCTCCCGATGAGGC...CTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR TCA 90 bp GGCCCCCTGAGGTTTACTCCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCTGTCGCTGCTGCTGGTaGCCGAGGAATCACTACCCA +
Preference number: 4 (lower is better)
Translates to: GPLRFTPGLPGRGTSGFLCRCCW*PRNHYP
Trigger: TGGGTAGTGATTCCTCGGTCACCAGCAGCAGCGACA...GAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGGAGTAAACCTCAGGGGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCAGAGTTCCGAGTCCCCTaGTGTCTCCACCGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQAEFRVP*CLHRGG
Trigger: GCCGCCTCGGTGGAGACAGCAGGGGACTCGGAACTC...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR TCA 90 bp CACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGTGCCCGTGGAGTCTTTaGTGTTGTAGGCGCCGTCAT +
Preference number: 4 (lower is better)
Translates to: HIRLSPAQEPRGVWEDVECPWSL*CCRRRH
Trigger: ATGACGGCGCCTACAACATCAAAGACTCCACGGGCA...CTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp CTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCAGCCTCATCGGGAGGTTaGTCCAGCGTCCAGATCTGC +
Preference number: 4 (lower is better)
Translates to: LSPAQEPRGVWEDVEHQSASSGG*SSVQIC
Trigger: GCAGATCTGGACGCTGGAGCAACCTCCCGATGAGGC...TGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp CACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGTCAGTGTCCAGTACTTaGCCGTGTGGGTGCGAAAGG +
Preference number: 4 (lower is better)
Translates to: HIRLSPAQEPRGVWEDVESVSST*PCGCER
Trigger: CCTTTCGCACCCACACGGGCAAGTACTGGACACTGA...CTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR TCA 90 bp AGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGTGTCGCTGCTGCTGGTaGCCGAGGAATCACTACCCA +
Preference number: 4 (lower is better)
Translates to: SPEVSGKTWSTNHRARAGCRCCW*PRNHYP
Trigger: TGGGTAGTGATTCCTCGGTCACCAGCAGCAGCGACA...CCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR TCA 90 bp CTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCACTAGTACTCCCAGAGTaGGGCGGGGTCGATAGTCTC +
Preference number: 4 (lower is better)
Translates to: LSPAQEPRGVWEDVEHQSLVLPE*GGVDSL
Trigger: GAGACTATCGACCCCGCCTCACTCTGGGAGTACTAG...TGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCAGACAGGTCCATTCCCTaGCGCGTGGACACGTTCCTC +
Preference number: 4 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQADRSIP*RVDTFL
Trigger: GAGGAACGTGTCCACGCGCCAGGGAATGGACCTGTC...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CCA 90 bp AACCAGAGTCCCTCCTGGGGACAGTCTGCAGCCACCGACCCATGGGGAGCAGTGAGCAGCTGGCGTTCTTaGTGGACGCAGTGGATTGCA +
Preference number: 4 (lower is better)
Translates to: NQSPSWGQSAATDPWGAVSSWRS*WTQWIA
Trigger: TGCAATCCACTGCGTCCACCAAGAACGCCAGCTGCT...CACTGCTCCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAGGGACTCTGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp GAGGGAACCAGAGTCCCTCCTGGGGACAGTCTGCAGCCACCGACCCATGGGGAGCAAGCTACTAGCGGATaGGTTCACCTTGAACCCGAA +
Preference number: 4 (lower is better)
Translates to: EGTRVPPGDSLQPPTHGEQATSG*VHLEPE
Trigger: TTCGGGTTCAAGGTGAACGCATCCGCTAGTAGCTTG...CTCCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAGGGACTCTGGTTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp GGCCCCCTGAGGTTTACTCCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCAAGCTACTAGCGGATaGGTTCACCTTGAACCCGAA +
Preference number: 4 (lower is better)
Translates to: GPLRFTPGLPGRGTSGFLQATSG*VHLEPE
Trigger: TTCGGGTTCAAGGTGAACGCATCCGCTAGTAGCTTG...GAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGGAGTAAACCTCAGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTGCCTTCCAGACACACGGCCGCGCTaGCCGCCTCATCGGGAGGTT +
Preference number: 4 (lower is better)
Translates to: FESKSQAQTLQDGTDCLPDTRPR*PPHREV
Trigger: AACCTCCCGATGAGGCGGGCAGCGCGGCCGTGTGTC...TGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp CTTTCTCCCGCCCAGGAGCCCCGAGGTGTCTGGGAAGACGTGGAGCACCAATCATGGCGGTCACAAACTTaGCGTTGGAGGCTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: LSPAQEPRGVWEDVEHQSWRSQT*RWRLSE
Trigger: CTCTGAGAGCCTCCAACGGCAAGTTTGTGACCGCCA...TGATTGGTGCTCCACGTCTTCCCAGACACCTCGGGGCTCCTGGGCGGGAGAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCATCAGTGTCCAGTACTTaGCCGTGTGGGTGCGAAAGG +
Preference number: 4 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQASVSST*PCGCER
Trigger: CCTTTCGCACCCACACGGGCAAGTACTGGACACTGA...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CCA 90 bp GTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCAAGCAGCTGGCGTTCTTaGTGGACGCAGTGGATTGCA +
Preference number: 4 (lower is better)
Translates to: VWEDVEHQSQSQSWGGQASSWRS*WTQWIA
Trigger: TGCAATCCACTGCGTCCACCAAGAACGCCAGCTGCT...TGCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CCA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTGCCTTCCAGACAGGTCCATTCCCTaGCGCGTGGACACGTTCCTC +
Preference number: 4 (lower is better)
Translates to: FESKSQAQTLQDGTDCLPDRSIP*RVDTFL
Trigger: GAGGAACGTGTCCACGCGCCAGGGAATGGACCTGTC...TGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
3UTR CAA 72 bp GACAGACTGCCTTCCAGCCAAGATCCAGAAAAACACTaGTGGGCAAGGTTGGCCATGCCCGGCTTCAGTCCC +
Preference number: 4 (lower is better)
Translates to: DRLPSSQDPEKH*WARLAMPGFSP
Trigger: GGGACTGAAGCCGGGCATGGCCAACCTTGCCCACAAGTGTTTTTCTGGATCTTGGCTGGAAGGCAGTCTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR GCA 90 bp TTTGAGTCAAAGAGCCAGGCCCAAACACTGCAGGATGGGACAGACTGCCTTCCATGGCGGTCACAAACTTaGCGTTGGAGGCTCTCAGAG +
Preference number: 4 (lower is better)
Translates to: FESKSQAQTLQDGTDCLPWRSQT*RWRLSE
Trigger: CTCTGAGAGCCTCCAACGGCAAGTTTGTGACCGCCA...TGGAAGGCAGTCTGTCCCATCCTGCAGTGTTTGGGCCTGGCTCTTTGACTCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CAA 90 bp CCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCCCGCCCAGGAGCCCCGAGGTCAGTGTCCAGTACTaGCCCGTGTGGGTGCGAAAG +
Preference number: 5 (lower is better)
Translates to: PGLPGRGTSGFLPPRSPEVSVQY*PVWVRK
Trigger: CTTTCGCACCCACACGGGCAAGTACTGGACACTGAC...CTCGGGGCTCCTGGGCGGGAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CAA 90 bp AACCAGAGTCCCTCCTGGGGACAGTCTGCAGCCACCGACCCATGGGGAGCAGTGAGAGTGCCCGTGACCTaGCGGCAGCCAATGAACCCG +
Preference number: 5 (lower is better)
Translates to: NQSPSWGQSAATDPWGAVRVPVT*RQPMNP
Trigger: CGGGTTCATTGGCTGCCGCAAGGTCACGGGCACTCT...CACTGCTCCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAGGGACTCTGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CAA 90 bp AACCAGAGTCCCTCCTGGGGACAGTCTGCAGCCACCGACCCATGGGGAGCAGTGGTCAGTGTCCAGTACTaGCCCGTGTGGGTGCGAAAG +
Preference number: 5 (lower is better)
Translates to: NQSPSWGQSAATDPWGAVVSVQY*PVWVRK
Trigger: CTTTCGCACCCACACGGGCAAGTACTGGACACTGAC...CACTGCTCCCCATGGGTCGGTGGCTGCAGACTGTCCCCAGGAGGGACTCTGGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CAA 90 bp GGCCCCCTGAGGTTTACTCCAGGGCTCCCAGGGAGGGGCACATCCGGCTTTCTCTTGGCGGTCACAAACTaGCCGTTGGAGGCTCTCAGA +
Preference number: 5 (lower is better)
Translates to: GPLRFTPGLPGRGTSGFLLAVTN*PLEALR
Trigger: TCTGAGAGCCTCCAACGGCAAGTTTGTGACCGCCAA...GAGAAAGCCGGATGTGCCCCTCCCTGGGAGCCCTGGAGTAAACCTCAGGGGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5
CDS-3UTR CAA 90 bp TGTCTGGGAAGACGTGGAGCACCAATCACAGAGCCAGAGCTGGGGTGGTCAGGCTTGGCGGTCACAAACTaGCCGTTGGAGGCTCTCAGA +
Preference number: 5 (lower is better)
Translates to: CLGRRGAPITEPELGWSGLAVTN*PLEALR
Trigger: TCTGAGAGCCTCCAACGGCAAGTTTGTGACCGCCAA...GCCTGACCACCCCAGCTCTGGCTCTGTGATTGGTGCTCCACGTCTTCCCAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031565.15
ENSMUST00000198017.5