RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FSBP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094595

Ensembl transcript IDs: ENSMUST00000180239.2

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TATCTAACCCAGTGCCTCCTGGGCACTAGGCAAGCATCTATCACCTaGGCTGAGCTACCTCCTCAGGCCTCAAGACATTTCACAGTACAC +
Preference number: 1 (lower is better)
Translates to: YLTQCLLGTRQASIT*AELPPQASRHFTVH
Trigger: GTGTACTGTGAAATGTCTTGAGGCCTGAGGAGGTAGCTCAGCTCAGGTGATAGATGCTTGCCTAGTGCCCAGGAGGCACTGGGTTAGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR GCA 90 bp GGGGGAAGAAGAGTACGTCATAACCTTGATGTCCTGACCCTGCAGTaGCAAGTGCTAGGATTAGAGATGCACTACACCCACACACAGGTT +
Preference number: 1 (lower is better)
Translates to: GGRRVRHNLDVLTLQ*QVLGLEMHYTHTQV
Trigger: AACCTGTGTGTGGGTGTAGTGCATCTCTAATCCTAGCACTTGGCACTGCAGGGTCAGGACATCAAGGTTATGACGTACTCTTCTTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CAA 90 bp CTAGGATTAGAGATGCACTACACCCACACACAGGTTCATGGAGTGTaGGCAATCTATCTAACCCAGTGCCTCCTGGGCACTAGGCAAGCA +
Preference number: 2 (lower is better)
Translates to: LGLEMHYTHTQVHGV*AIYLTQCLLGTRQA
Trigger: TGCTTGCCTAGTGCCCAGGAGGCACTGGGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTCTAATCCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR-3UTR TCA 90 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCATCTATCACCTGAGCTaGGCTACCTCCTCAGGCCTC +
Preference number: 2 (lower is better)
Translates to: EMHYTHTQVHGVLAIYLTIYHLS*ATSSGL
Trigger: GAGGCCTGAGGAGGTAGCTCAGCTCAGGTGATAGAT...GGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR-3UTR GCA 90 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCCTGCATCTTCTCATCTaGCTCTACCTCCCAAGGGCT +
Preference number: 2 (lower is better)
Translates to: EMHYTHTQVHGVLAIYLTLHLLI*LYLPRA
Trigger: AGCCCTTGGGAGGTAGAGGCAGATGAGAAGATGCAG...GGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR-3UTR GCA 90 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCGCAGGGCCAGGGGCATaGCCAAACTCTGTTTTAAAA +
Preference number: 2 (lower is better)
Translates to: EMHYTHTQVHGVLAIYLTAGPGA*PNSVLK
Trigger: TTTTAAAACAGAGTTTGGGCATGCCCCTGGCCCTGC...GGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR-3UTR TCA 90 bp AGAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACAGCCACGGCCTTTCCTaGCCTTTTTACTCTAAAGAC +
Preference number: 2 (lower is better)
Translates to: RDALHPHTGSWSVGNLSNSHGLS*PFYSKD
Trigger: GTCTTTAGAGTAAAAAGGTCAGGAAAGGCCGTGGCT...GTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR-3UTR TCA 90 bp AGAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACATCCAAAAGAAAGCCTaGATTTTAAAGTCCTTCCTC +
Preference number: 2 (lower is better)
Translates to: RDALHPHTGSWSVGNLSNIQKKA*ILKSFL
Trigger: GAGGAAGGACTTTAAAATTCAGGCTTTCTTTTGGAT...GTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CAA 90 bp GTTCAATCTGAGTCCTTAAAAATAGCGTTTAATGTAATCCATAACTaGGTGACAACTGGCATCCAGTTGACACCCGCTCAATTTCACTTC +
Preference number: 2 (lower is better)
Translates to: VQSESLKIAFNVIHN*VTTGIQLTPAQFHF
Trigger: GAAGTGAAATTGAGCGGGTGTCAACTGGATGCCAGTTGTCACCAAGTTATGGATTACATTAAACGCTATTTTTAAGGACTCAGATTGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR-3UTR GCA 90 bp AAACTTATAATCTCAGTATTCAGAAGCTGGGGCAGGAGAAACTTATATCACAGGGAGGTTACAAGCTTATaGAACAAATGCAATTCTCTT +
Preference number: 2 (lower is better)
Translates to: KLIISVFRSWGRRNLYHREVTSL*NKCNSL
Trigger: AAGAGAATTGCATTTGTTGCATAAGCTTGTAACCTC...CCTGTGATATAAGTTTCTCCTGCCCCAGCTTCTGAATACTGAGATTATAAGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR-3UTR GCA 90 bp AGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTTTCAAAGGAACAATGCCAATGTCATaGACACAAGTCTTTTGTTAC +
Preference number: 2 (lower is better)
Translates to: RLFQISSNCKFYHHSFKGTMPMS*TQVFCY
Trigger: GTAACAAAAGACTTGTGTGCATGACATTGGCATTGT...TCCTTTGAAAGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR TCA 72 bp GCCAGGAGAGTCCTGGGTCCCAGCCACGGCCTTTCCTaGCCTTTTTACTCTAAAGACCACCAGCTAGAAGCC +
Preference number: 3 (lower is better)
Translates to: ARRVLGPSHGLS*PFYSKDHQLEA
Trigger: GGCTTCTAGCTGGTGGTCTTTAGAGTAAAAAGGTCAGGAAAGGCCGTGGCTGGGACCCAGGACTCTCCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR TCA 72 bp CAGTGCCTCCTGGGCACTAGGCAAGCATCTATCACCTaGGCTGAGCTACCTCCTCAGGCCTCAAGACATTTC +
Preference number: 3 (lower is better)
Translates to: QCLLGTRQASIT*AELPPQASRHF
Trigger: GAAATGTCTTGAGGCCTGAGGAGGTAGCTCAGCTCAGGTGATAGATGCTTGCCTAGTGCCCAGGAGGCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR TCA 72 bp CCAAGTTCACTTGTTACCCTTCAGCGAGCATCACTATaGGCAGACTGCTGGACCCCAGCCCTGGTTTCTCAT +
Preference number: 3 (lower is better)
Translates to: PSSLVTLQRASL*ADCWTPALVSH
Trigger: ATGAGAAACCAGGGCTGGGGTCCAGCAGTCTGCTCATAGTGATGCTCGCTGAAGGGTAACAAGTGAACTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CCA 72 bp GAGCATCACTATGAGCAGACTGCTGGACCCCAGCCCTaGTTTCTCATCAGGACTGACACTACTGTTGTAACT +
Preference number: 3 (lower is better)
Translates to: EHHYEQTAGPQP*FLIRTDTTVVT
Trigger: AGTTACAACAGTAGTGTCAGTCCTGATGAGAAACCAGGGCTGGGGTCCAGCAGTCTGCTCATAGTGATGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR GCA 72 bp AGAGTACGTCATAACCTTGATGTCCTGACCCTGCAGTaGCAAGTGCTAGGATTAGAGATGCACTACACCCAC +
Preference number: 3 (lower is better)
Translates to: RVRHNLDVLTLQ*QVLGLEMHYTH
Trigger: GTGGGTGTAGTGCATCTCTAATCCTAGCACTTGGCACTGCAGGGTCAGGACATCAAGGTTATGACGTACTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CCA 72 bp AGGATTAGAGATGCACTACACCCACACACAGGTTCATaGAGTGTTGGCAATCTATCTAACCCAGTGCCTCCT +
Preference number: 3 (lower is better)
Translates to: RIRDALHPHTGS*SVGNLSNPVPP
Trigger: AGGAGGCACTGGGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTCTAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR TCA 72 bp TTCACTTCGCCCACATTACTCTTCAACAGTAACTGTTaGGAAGCTGATTTAAGCACCAAGTTCACTTGTTAC +
Preference number: 3 (lower is better)
Translates to: FTSPTLLFNSNC*EADLSTKFTCY
Trigger: GTAACAAGTGAACTTGGTGCTTAAATCAGCTTCTCAACAGTTACTGTTGAAGAGTAATGTGGGCGAAGTGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CAA 72 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTaGGCAATCTATCTAACCCAGTGCCTCCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: EMHYTHTQVHGV*AIYLTQCLLGT
Trigger: AGTGCCCAGGAGGCACTGGGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp ATAGGACGTGTGCTGAGCTTCATGATGCTCCAAAATGAAAATAATTCTGGCAAAAGGCTGCGTAGGCCCTaGGCTGTGCGAGGAGGGCGG +
Preference number: 4 (lower is better)
Translates to: IGRVLSFMMLQNENNSGKRLRRP*AVRGGR
Trigger: CCGCCCTCCTCGCACAGCTCAGGGCCTACGCAGCCT...TTTGCCAGAATTATTTTCATTTTGGAGCATCATGAAGCTCAGCACACGTCCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCATAGCAACAGGATGGTaGTCCACCATTACCTGCAGC +
Preference number: 4 (lower is better)
Translates to: EMHYTHTQVHGVLAIYLTIATGW*STITCS
Trigger: GCTGCAGGTAATGGTGGATCACCATCCTGTTGCTAT...GGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCACTGAGTTGAGGATTTaGAACCAGGGGAGGAGATGG +
Preference number: 4 (lower is better)
Translates to: EMHYTHTQVHGVLAIYLTTELRI*NQGRRW
Trigger: CCATCTCCTCCCCTGGTTTCAAATCCTCAACTCAGT...GGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp CAGGCCAAGCAATGTTCTATCCTTGAGCTACATCTCCAACCAAAAGGTGGTTTTGACTGGGCCTCCTTTTaGTGCAATAGCTCCTGTTTG +
Preference number: 4 (lower is better)
Translates to: QAKQCSILELHLQPKGGFDWASF*CNSSCL
Trigger: CAAACAGGAGCTATTGCAGCAAAAGGAGGCCCAGTC...AAAACCACCTTTTGGTTGGAGATGTAGCTCAAGGATAGAACATTGCTTGGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCAGTCTCATCCAAGTTTaGACTCTGTATGTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: EMHYTHTQVHGVLAIYLTSLIQV*TLYVAP
Trigger: AGGAGCCACATACAGAGTGCAAACTTGGATGAGACT...GGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp AAACTTATAATCTCAGTATTCAGAAGCTGGGGCAGGAGAAACTTATATCACAGGGCCTTTTGTAAAGGCTaGGTAGGCCCTGAGCTGTGC +
Preference number: 4 (lower is better)
Translates to: KLIISVFRSWGRRNLYHRAFCKG*VGPELC
Trigger: GCACAGCTCAGGGCCTACGCAGCCTTTACAAAAGGC...CCTGTGATATAAGTTTCTCCTGCCCCAGCTTCTGAATACTGAGATTATAAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CAA 72 bp AGTCTGATCTACATAGTGTGTCCCAGGTCATTGTCCTaGTTGACGTTACTCAAAGCTTTCTACCTATCCCCC +
Preference number: 4 (lower is better)
Translates to: SLIYIVCPRSLS*LTLLKAFYLSP
Trigger: GGGGGATAGGTAGAAAGCTTTGAGTAACGTCAACAAGGACAATGACCTGGGACACACTATGTAGATCAGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CAA 72 bp GAGGGCAGTCTGATCTACATAGTGTGTCCCAGGTCATaGTCCTTGTTGACGTTACTCAAAGCTTTCTACCTA +
Preference number: 4 (lower is better)
Translates to: EGSLIYIVCPRS*SLLTLLKAFYL
Trigger: TAGGTAGAAAGCTTTGAGTAACGTCAACAAGGACAATGACCTGGGACACACTATGTAGATCAGACTGCCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp AGAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCCATCCCTCTTCTCCTaGACATACAATCCAAAATTC +
Preference number: 4 (lower is better)
Translates to: RDALHPHTGSWSVGNLSNPSLFS*TYNPKF
Trigger: GAATTTTGGATTGTATGTTCAGGAGAAGAGGGATGG...GTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CAA 72 bp GCAGGCACCTCAAACAGGCCAAGCAATGTTCTATCCTaGAGCTACATCTCCAACCAAAAGGTGGTTTTAATT +
Preference number: 4 (lower is better)
Translates to: AGTSNRPSNVLS*SYISNQKVVLI
Trigger: AATTAAAACCACCTTTTGGTTGGAGATGTAGCTCAAGGATAGAACATTGCTTGGCCTGTTTGAGGTGCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp CAGGCCAAGCAATGTTCTATCCTTGAGCTACATCTCCAACCAAAAGGTGGTTTTGTTTGGCATATTCTTTaGGCCTTTTGTAAAGGCTGC +
Preference number: 4 (lower is better)
Translates to: QAKQCSILELHLQPKGGFVWHIL*AFCKGC
Trigger: GCAGCCTTTACAAAAGGCTCAAAGAATATGCCAAAC...AAAACCACCTTTTGGTTGGAGATGTAGCTCAAGGATAGAACATTGCTTGGCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp AGAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACGACAGAAGATGGAGATaGTGTCATTCTCATATCAAC +
Preference number: 4 (lower is better)
Translates to: RDALHPHTGSWSVGNLSNDRRWR*CHSHIN
Trigger: GTTGATATGAGAATGACATCATCTCCATCTTCTGTC...GTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CCA 90 bp CAGGCCAAGCAATGTTCTATCCTTGAGCTACATCTCCAACCAAAAGGTGGTTTTCTTTTAAACTCAGACTaGGCCTCCTTTTGCTGCAAT +
Preference number: 4 (lower is better)
Translates to: QAKQCSILELHLQPKGGFLLNSD*ASFCCN
Trigger: ATTGCAGCAAAAGGAGGCCCAGTCTGAGTTTAAAAG...AAAACCACCTTTTGGTTGGAGATGTAGCTCAAGGATAGAACATTGCTTGGCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp CAGGCCAAGCAATGTTCTATCCTTGAGCTACATCTCCAACCAAAAGGTGGTTTTGCTCTAAAGTATCACTaGGTTGAGGATTTGAAACCA +
Preference number: 4 (lower is better)
Translates to: QAKQCSILELHLQPKGGFALKYH*VEDLKP
Trigger: TGGTTTCAAATCCTCAACTCAGTGATACTTTAGAGC...AAAACCACCTTTTGGTTGGAGATGTAGCTCAAGGATAGAACATTGCTTGGCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp ATAGGACGTGTGCTGAGCTTCATGATGCTCCAAAATGAAAATAATTCTGGCAAAATCATTTCCATGACTTaGTTGGTGGGCTCCGAAACA +
Preference number: 4 (lower is better)
Translates to: IGRVLSFMMLQNENNSGKIISMT*LVGSET
Trigger: TGTTTCGGAGCCCACCAAGCAAGTCATGGAAATGAT...TTTGCCAGAATTATTTTCATTTTGGAGCATCATGAAGCTCAGCACACGTCCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CCA 90 bp ATAGGACGTGTGCTGAGCTTCATGATGCTCCAAAATGAAAATAATTCTGGCAAATTTGCACTCTGTATGTaGCTCCTGTCTCTTATGAGG +
Preference number: 4 (lower is better)
Translates to: IGRVLSFMMLQNENNSGKFALCM*LLSLMR
Trigger: CCTCATAAGAGACAGGAGCCACATACAGAGTGCAAA...TTTGCCAGAATTATTTTCATTTTGGAGCATCATGAAGCTCAGCACACGTCCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR TCA 90 bp AGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTTTCAAAGGAAAAGTATCACTGAGTTaGGGATTTGAAACCAGGGGA +
Preference number: 4 (lower is better)
Translates to: RLFQISSNCKFYHHSFKGKVSLS*GFETRG
Trigger: TCCCCTGGTTTCAAATCCTCAACTCAGTGATACTTT...TCCTTTGAAAGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp AAACTTATAATCTCAGTATTCAGAAGCTGGGGCAGGAGAAACTTATATCACAGGCGCATTATAGTTAACTaGTATGACATCCCAACATCT +
Preference number: 4 (lower is better)
Translates to: KLIISVFRSWGRRNLYHRRIIVN*YDIPTS
Trigger: AGATGTTGGGATGTCATAGCAGTTAACTATAATGCG...CCTGTGATATAAGTTTCTCCTGCCCCAGCTTCTGAATACTGAGATTATAAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp AAACTTATAATCTCAGTATTCAGAAGCTGGGGCAGGAGAAACTTATATCACAGGTTAATGTCCTCTTCTTaGTTCACCTCTACAGTGATA +
Preference number: 4 (lower is better)
Translates to: KLIISVFRSWGRRNLYHRLMSSS*FTSTVI
Trigger: TATCACTGTAGAGGTGAAGCAAGAAGAGGACATTAA...CCTGTGATATAAGTTTCTCCTGCCCCAGCTTCTGAATACTGAGATTATAAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp AGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTTTCAAAGGAGATCCCTCCACAACATaGATTAACTCATGTTCTTCT +
Preference number: 4 (lower is better)
Translates to: RLFQISSNCKFYHHSFKGDPSTT*INSCSS
Trigger: AGAAGAACATGAGTTAATGCATGTTGTGGAGGGATC...TCCTTTGAAAGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
3UTR CAA 72 bp TACATGAGGCCAACAATTAAATGTCTTAGAAAACAATaGAGGGAAGGCAACAAACTAGATTACCATGTCAGC +
Preference number: 4 (lower is better)
Translates to: YMRPTIKCLRKQ*REGNKLDYHVS
Trigger: GCTGACATGGTAATCTAGTTTGTTGCCTTCCCTCAATTGTTTTCTAAGACATTTAATTGTTGGCCTCATGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR GCA 90 bp ATAGGACGTGTGCTGAGCTTCATGATGCTCCAAAATGAAAATAATTCTGGCAAATCATGTTCTTCTCTTTaGTCTAAAGTATCACTGAGT +
Preference number: 4 (lower is better)
Translates to: IGRVLSFMMLQNENNSGKSCSSL*SKVSLS
Trigger: ACTCAGTGATACTTTAGAGCAAAGAGAAGAACATGA...TTTGCCAGAATTATTTTCATTTTGGAGCATCATGAAGCTCAGCACACGTCCTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS TCA 90 bp ACTGGGCCTCCTTTTGCTGCAATAGCTCCTGTTTGGCATATTCTTTaGGCCTTTTGTAAAGGCTGCGTAGGCCCTGAGCTGTGCGAGGAG +
Preference number: 5 (lower is better)
Translates to: TGPPFAAIAPVWHIL*AFCKGCVGPELCEE
Trigger: CTCCTCGCACAGCTCAGGGCCTACGCAGCCTTTACAAAAGGCTCAAAGAATATGCCAAACAGGAGCTATTGCAGCAAAAGGAGGCCCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CCA 90 bp CTCTGTATGTGGCTCCTGTCTCTTATGAGGCCGAAGCTGGCAATCTaGGGAATCATTTCCATGACTTGCTTGGTGGGCTCCGAAACACTG +
Preference number: 5 (lower is better)
Translates to: LCMWLLSLMRPKLAI*GIISMTCLVGSETL
Trigger: CAGTGTTTCGGAGCCCACCAAGCAAGTCATGGAAATGATTCCCCAGATTGCCAGCTTCGGCCTCATAAGAGACAGGAGCCACATACAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS TCA 90 bp ATGTCCTCTTCTTGCTTCACCTCTACAGTGATAGCAACAGGATGGTaGTCCACCATTACCTGCAGCGAACTGGTACCAGCTTGGGCAGTC +
Preference number: 5 (lower is better)
Translates to: MSSSCFTSTVIATGW*STITCSELVPAWAV
Trigger: GACTGCCCAAGCTGGTACCAGTTCGCTGCAGGTAATGGTGGATCACCATCCTGTTGCTATCACTGTAGAGGTGAAGCAAGAAGAGGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS GCA 90 bp CTTATGAGGCCGAAGCTGGCAATCTGGGGAATCATTTCCATGACTTaGTTGGTGGGCTCCGAAACACTGCTTTTAAACTCAGACTGGGCC +
Preference number: 5 (lower is better)
Translates to: LMRPKLAIWGIISMT*LVGSETLLLNSDWA
Trigger: GGCCCAGTCTGAGTTTAAAAGCAGTGTTTCGGAGCCCACCAAGCAAGTCATGGAAATGATTCCCCAGATTGCCAGCTTCGGCCTCATAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CCA 90 bp ATGACTTGCTTGGTGGGCTCCGAAACACTGCTTTTAAACTCAGACTaGGCCTCCTTTTGCTGCAATAGCTCCTGTTTGGCATATTCTTTG +
Preference number: 5 (lower is better)
Translates to: MTCLVGSETLLLNSD*ASFCCNSSCLAYSL
Trigger: CAAAGAATATGCCAAACAGGAGCTATTGCAGCAAAAGGAGGCCCAGTCTGAGTTTAAAAGCAGTGTTTCGGAGCCCACCAAGCAAGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CAA 90 bp CAGGCCAAGCAATGTTCTATCCTTGAGCTACATCTCCAACCAAAAGGTGGTTTTATTTCCATGACTTGCTaGGTGGGCTCCGAAACACTG +
Preference number: 5 (lower is better)
Translates to: QAKQCSILELHLQPKGGFISMTC*VGSETL
Trigger: CAGTGTTTCGGAGCCCACCAAGCAAGTCATGGAAAT...AAAACCACCTTTTGGTTGGAGATGTAGCTCAAGGATAGAACATTGCTTGGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CAA 90 bp GAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCTGCAATAGCTCCTGTTaGGCATATTCTTTGAGCCTT +
Preference number: 5 (lower is better)
Translates to: EMHYTHTQVHGVLAIYLTCNSSC*AYSLSL
Trigger: AAGGCTCAAAGAATATGCCAAACAGGAGCTATTGCA...GGTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CAA 90 bp AGAGATGCACTACACCCACACACAGGTTCATGGAGTGTTGGCAATCTATCTAACCTTAATGTCCTCTTCTaGCTTCACCTCTACAGTGAT +
Preference number: 5 (lower is better)
Translates to: RDALHPHTGSWSVGNLSNLNVLF*LHLYSD
Trigger: ATCACTGTAGAGGTGAAGCAAGAAGAGGACATTAAG...GTTAGATAGATTGCCAACACTCCATGAACCTGTGTGTGGGTGTAGTGCATCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CAA 90 bp ATAGGACGTGTGCTGAGCTTCATGATGCTCCAAAATGAAAATAATTCTGGCAAATCTCCACTTCAATCTTaGCTCTTAGCAGCTCCTCCT +
Preference number: 5 (lower is better)
Translates to: IGRVLSFMMLQNENNSGKSPLQS*LLAAPP
Trigger: AGGAGGAGCTGCTAAGAGCAAAGATTGAAGTGGAGA...TTTGCCAGAATTATTTTCATTTTGGAGCATCATGAAGCTCAGCACACGTCCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CAA 90 bp AGACTTTTCCAAATATCTTCCAACTGTAAGTTCTACCACCACTCTTTCAAAGGAAATCATTTCCATGACTaGCTTGGTGGGCTCCGAAAC +
Preference number: 5 (lower is better)
Translates to: RLFQISSNCKFYHHSFKGNHFHD*LGGLRN
Trigger: GTTTCGGAGCCCACCAAGCAAGTCATGGAAATGATT...TCCTTTGAAAGAGTGGTGGTAGAACTTACAGTTGGAAGATATTTGGAAAAGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS-3UTR CAA 90 bp AAACTTATAATCTCAGTATTCAGAAGCTGGGGCAGGAGAAACTTATATCACAGGTCAGATAAGGTAAAATaGGAAGATCTAGCCTTTCCT +
Preference number: 5 (lower is better)
Translates to: KLIISVFRSWGRRNLYHRSDKVK*EDLAFP
Trigger: AGGAAAGGCTAGATCTTCCAATTTTACCTTATCTGA...CCTGTGATATAAGTTTCTCCTGCCCCAGCTTCTGAATACTGAGATTATAAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CCA 72 bp TGGCTCCTGTCTCTTATGAGGCCGAAGCTGGCAATCTaGGGAATCATTTCCATGACTTGCTTGGTGGGCTCC +
Preference number: 6 (lower is better)
Translates to: WLLSLMRPKLAI*GIISMTCLVGS
Trigger: GGAGCCCACCAAGCAAGTCATGGAAATGATTCCCCAGATTGCCAGCTTCGGCCTCATAAGAGACAGGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CCA 72 bp CAACAGGATGGTGATCCACCATTACCTGCAGCGAACTaGTACCAGCTTGGGCAGTCTCATCCAAGTTTGCAC +
Preference number: 6 (lower is better)
Translates to: QQDGDPPLPAAN*YQLGQSHPSLH
Trigger: GTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCGCTGCAGGTAATGGTGGATCACCATCCTGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CAA 90 bp ATGAGGCCGAAGCTGGCAATCTGGGGAATCATTTCCATGACTTGCTaGGTGGGCTCCGAAACACTGCTTTTAAACTCAGACTGGGCCTCC +
Preference number: 6 (lower is better)
Translates to: MRPKLAIWGIISMTC*VGSETLLLNSDWAS
Trigger: GGAGGCCCAGTCTGAGTTTAAAAGCAGTGTTTCGGAGCCCACCAAGCAAGTCATGGAAATGATTCCCCAGATTGCCAGCTTCGGCCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CAA 90 bp AACAGGATGGTGATCCACCATTACCTGCAGCGAACTGGTACCAGCTaGGGCAGTCTCATCCAAGTTTGCACTCTGTATGTGGCTCCTGTC +
Preference number: 6 (lower is better)
Translates to: NRMVIHHYLQRTGTS*GSLIQVCTLYVAPV
Trigger: GACAGGAGCCACATACAGAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCGCTGCAGGTAATGGTGGATCACCATCCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CAA 72 bp GTGATCCACCATTACCTGCAGCGAACTGGTACCAGCTaGGGCAGTCTCATCCAAGTTTGCACTCTGTATGTG +
Preference number: 6 (lower is better)
Translates to: VIHHYLQRTGTS*GSLIQVCTLYV
Trigger: CACATACAGAGTGCAAACTTGGATGAGACTGCCCAAGCTGGTACCAGTTCGCTGCAGGTAATGGTGGATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS TCA 72 bp CCAAGTTTGCACTCTGTATGTGGCTCCTGTCTCTTATaGGGCCGAAGCTGGCAATCTGGGGAATCATTTCCA +
Preference number: 6 (lower is better)
Translates to: PSLHSVCGSCLL*GRSWQSGESFP
Trigger: TGGAAATGATTCCCCAGATTGCCAGCTTCGGCCTCATAAGAGACAGGAGCCACATACAGAGTGCAAACTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS TCA 72 bp TCTTGCTTCACCTCTACAGTGATAGCAACAGGATGGTaGTCCACCATTACCTGCAGCGAACTGGTACCAGCT +
Preference number: 6 (lower is better)
Translates to: SCFTSTVIATGW*STITCSELVPA
Trigger: AGCTGGTACCAGTTCGCTGCAGGTAATGGTGGATCACCATCCTGTTGCTATCACTGTAGAGGTGAAGCAAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CCA 72 bp TTGGTGGGCTCCGAAACACTGCTTTTAAACTCAGACTaGGCCTCCTTTTGCTGCAATAGCTCCTGTTTGGCA +
Preference number: 6 (lower is better)
Translates to: LVGSETLLLNSD*ASFCCNSSCLA
Trigger: TGCCAAACAGGAGCTATTGCAGCAAAAGGAGGCCCAGTCTGAGTTTAAAAGCAGTGTTTCGGAGCCCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS TCA 72 bp CCTTTTGCTGCAATAGCTCCTGTTTGGCATATTCTTTaGGCCTTTTGTAAAGGCTGCGTAGGCCCTGAGCTG +
Preference number: 6 (lower is better)
Translates to: PFAAIAPVWHIL*AFCKGCVGPEL
Trigger: CAGCTCAGGGCCTACGCAGCCTTTACAAAAGGCTCAAAGAATATGCCAAACAGGAGCTATTGCAGCAAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS GCA 72 bp CCGAAGCTGGCAATCTGGGGAATCATTTCCATGACTTaGTTGGTGGGCTCCGAAACACTGCTTTTAAACTCA +
Preference number: 6 (lower is better)
Translates to: PKLAIWGIISMT*LVGSETLLLNS
Trigger: TGAGTTTAAAAGCAGTGTTTCGGAGCCCACCAAGCAAGTCATGGAAATGATTCCCCAGATTGCCAGCTTCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS CAA 72 bp AAGCTGGCAATCTGGGGAATCATTTCCATGACTTGCTaGGTGGGCTCCGAAACACTGCTTTTAAACTCAGAC +
Preference number: 6 (lower is better)
Translates to: KLAIWGIISMTC*VGSETLLLNSD
Trigger: GTCTGAGTTTAAAAGCAGTGTTTCGGAGCCCACCAAGCAAGTCATGGAAATGATTCCCCAGATTGCCAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2
CDS GCA 72 bp GAAACACTGCTTTTAAACTCAGACTGGGCCTCCTTTTaGTGCAATAGCTCCTGTTTGGCATATTCTTTGAGC +
Preference number: 6 (lower is better)
Translates to: ETLLLNSDWASF*CNSSCLAYSLS
Trigger: GCTCAAAGAATATGCCAAACAGGAGCTATTGCAGCAAAAGGAGGCCCAGTCTGAGTTTAAAAGCAGTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180239.2