RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FRMPD4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049176

Ensembl transcript IDs: ENSMUST00000112145.3, ENSMUST00000112146.9, ENSMUST00000112147.9, ENSMUST00000112149.9, ENSMUST00000238211.2, ENSMUST00000238709.2

Found 869 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAACTTTGGGTGGGAGGTCGGTCGCTGGGCGAGCAGCCAGGCCATaGGAGGACTTTGGAGGCAAGCCCACTGAGGGGGCTTTGGAGGTG +
Preference number: 1 (lower is better)
Translates to: TTLGGRSVAGRAARP*EDFGGKPTEGALEV
Trigger: CACCTCCAAAGCCCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCACCCAAAGTTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp CCATGGACGGGCAGAGGGGCGATTCCACAGGAGTGGCACAGGCACTaGTACTGCTGCCCGGTCCACAGCCTGTGTCCACTGAAGAGCCTT +
Preference number: 1 (lower is better)
Translates to: PWTGRGAIPQEWHRH*YCCPVHSLCPLKSL
Trigger: AAGGCTCTTCAGTGGACACAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTGCCACTCCTGTGGAATCGCCCCTCTGCCCGTCCATGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp GGCAGAGGGGCGATTCCACAGGAGTGGCACAGGCACTGCTACTGCTaGCCGGTCCACAGCCTGTGTCCACTGAAGAGCCTTGAGAGCTCT +
Preference number: 1 (lower is better)
Translates to: GRGAIPQEWHRHCYC*PVHSLCPLKSLESS
Trigger: AGAGCTCTCAAGGCTCTTCAGTGGACACAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTGCCACTCCTGTGGAATCGCCCCTCTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp CCCCAGGTTCCTGAGGGAGGTGGCCAGCCCGAAGACTTGGTCCTGTaGCAGCTGTGTGACCTCATGCCACTGAACTGCTCTGTGCCTCAG +
Preference number: 1 (lower is better)
Translates to: PQVPEGGGQPEDLVL*QLCDLMPLNCSVPQ
Trigger: CTGAGGCACAGAGCAGTTCAGTGGCATGAGGTCACACAGCTGCCACAGGACCAAGTCTTCGGGCTGGCCACCTCCCTCAGGAACCTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp AAGGATCTGCTTGGAAGGCACAACTTTGGGTGGGAGGTCGGTCGCTaGGCGAGCAGCCAGGCCATGGGAGGACTTTGGAGGCAAGCCCAC +
Preference number: 1 (lower is better)
Translates to: KDLLGRHNFGWEVGR*ASSQAMGGLWRQAH
Trigger: GTGGGCTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCAAGCAGATCCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp CCAGGCCATGGGAGGACTTTGGAGGCAAGCCCACTGAGGGGGCTTTaGAGGTGGGGAACTCTGTCTGCTCTTCTGCCAGAGGGTGATAGC +
Preference number: 1 (lower is better)
Translates to: PGHGRTLEASPLRGL*RWGTLSALLPEGDS
Trigger: GCTATCACCCTCTGGCAGAAGAGCAGACAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp AGAGCAGGCACTGTCATGCGTGGACACATCCCTTCTGTCTGTGGGTaGAGTTCCTCGAAGGTGGCTCCATGGTTGGGATGGCCAGGGGCT +
Preference number: 1 (lower is better)
Translates to: RAGTVMRGHIPSVCG*SSSKVAPWLGWPGA
Trigger: AGCCCCTGGCCATCCCAACCATGGAGCCACCTTCGAGGAACTGCACCCACAGACAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GTGCAGAGCAGGCACTGTCATGCGTGGACACATCCCTTCTGTCTGTaGGTGCAGTTCCTCGAAGGTGGCTCCATGGTTGGGATGGCCAGG +
Preference number: 1 (lower is better)
Translates to: VQSRHCHAWTHPFCL*VQFLEGGSMVGMAR
Trigger: CCTGGCCATCCCAACCATGGAGCCACCTTCGAGGAACTGCACCCACAGACAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTCTGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp TGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGCCCTCTaGACTGGTGGGCACAGCATCAATGAGGGACACAGGGATCTCCTC +
Preference number: 1 (lower is better)
Translates to: CGNDGRVQSLLTLAL*TGGHSINEGHRDLL
Trigger: GAGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCACCAGTGCAGAGGGCAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp ATCTCCCTCCTTTCCCAGAAGCATCTGGAATCATGTGCTTCCCCATaGACGGGCAGAGGGGCGATTCCACAGGAGTGGCACAGGCACTGC +
Preference number: 1 (lower is better)
Translates to: ISLLSQKHLESCASP*TGRGAIPQEWHRHC
Trigger: GCAGTGCCTGTGCCACTCCTGTGGAATCGCCCCTCTGCCCGTCCATGGGGAAGCACATGATTCCAGATGCTTCTGGGAAAGGAGGGAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp CATGGGAGGACTTTGGAGGCAAGCCCACTGAGGGGGCTTTGGAGGTaGGGAACTCTGTCTGCTCTTCTGCCAGAGGGTGATAGCCTTCAT +
Preference number: 1 (lower is better)
Translates to: HGRTLEASPLRGLWR*GTLSALLPEGDSLH
Trigger: ATGAAGGCTATCACCCTCTGGCAGAAGAGCAGACAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp GCTCTTCTGCCAGAGGGTGATAGCCTTCATGAGTGGCCAAGAACATaGGGGAGAGGCTTTCCGACTGCTTCTGTGCTGCAGCTAGCTCAG +
Preference number: 1 (lower is better)
Translates to: ALLPEGDSLHEWPRT*GRGFPTASVLQLAQ
Trigger: CTGAGCTAGCTGCAGCACAGAAGCAGTCGGAAAGCCTCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATCACCCTCTGGCAGAAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp CTGGGCCATCTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTaGACAGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATG +
Preference number: 1 (lower is better)
Translates to: LGHLGLLSRPSELSL*TVLPLASAVQQPGM
Trigger: CATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAGATGGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 90 bp TGGTTTCTGGCTCCATTTCCATGTGGTCTGAGTGAAGGATCTGCTTaGAAGGCACAACTTTGGGTGGGAGGTCGGTCGCTGGGCGAGCAG +
Preference number: 1 (lower is better)
Translates to: WFLAPFPCGLSEGSA*KAQLWVGGRSLGEQ
Trigger: CTGCTCGCCCAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCAAGCAGATCCTTCACTCAGACCACATGGAAATGGAGCCAGAAACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp TCCCTTCTGTCTGTGGGTGCAGTTCCTCGAAGGTGGCTCCATGGTTaGGATGGCCAGGGGCTCTCTCCTCTGGTGAAATATATCTCCCTC +
Preference number: 1 (lower is better)
Translates to: SLLSVGAVPRRWLHG*DGQGLSPLVKYISL
Trigger: GAGGGAGATATATTTCACCAGAGGAGAGAGCCCCTGGCCATCCCAACCATGGAGCCACCTTCGAGGAACTGCACCCACAGACAGAAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 90 bp CGGGGTTATCTAAGTCTTTGGCTGAGGCTACACAGGCCATGTCTGTaGGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCAGCCC +
Preference number: 1 (lower is better)
Translates to: RGYLSLWLRLHRPCL*GSGPLGQVLKHHQP
Trigger: GGGCTGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp AAAGCCCAGCACAGGGTCTCTCCTCATCTCCACCTTTCGTGGAGCTaGGGGGATGATTTGGCAGCTGTCAAACCGAGGGTCATCAAATGG +
Preference number: 1 (lower is better)
Translates to: KAQHRVSPHLHLSWS*GDDLAAVKPRVIKW
Trigger: CCATTTGATGACCCTCGGTTTGACAGCTGCCAAATCATCCCCCCAGCTCCACGAAAGGTGGAGATGAGGAGAGACCCTGTGCTGGGCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GGAACTCTGTCTGCTCTTCTGCCAGAGGGTGATAGCCTTCATGAGTaGCCAAGAACATGCGGGAGAGGCTTTCCGACTGCTTCTGTGCTG +
Preference number: 1 (lower is better)
Translates to: GTLSALLPEGDSLHE*PRTCGRGFPTASVL
Trigger: CAGCACAGAAGCAGTCGGAAAGCCTCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATCACCCTCTGGCAGAAGAGCAGACAGAGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp CAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGCTTCTaGAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCT +
Preference number: 1 (lower is better)
Translates to: QTFRAVPLDSSSPCF*SPTTRDELPGSDMA
Trigger: AGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 90 bp TCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTaGTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGAC +
Preference number: 1 (lower is better)
Translates to: SVQTFRAVPLDSSSP*FCSPTTRDELPGSD
Trigger: GTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 90 bp GGTGAAATATATCTCCCTCCTTTCCCAGAAGCATCTGGAATCATGTaGTTCCCCATGGACGGGCAGAGGGGCGATTCCACAGGAGTGGCA +
Preference number: 1 (lower is better)
Translates to: GEIYLPPFPEASGIM*FPMDGQRGDSTGVA
Trigger: TGCCACTCCTGTGGAATCGCCCCTCTGCCCGTCCATGGGGAAGCACATGATTCCAGATGCTTCTGGGAAAGGAGGGAGATATATTTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp CCATCTCTCAAAGTGCCAAACAGGGGGTCGGCATTAATGGCTGTGTaGAGAGCAGGCACTGTCATGCGTGGACACATCCCTTCTGTCTGT +
Preference number: 1 (lower is better)
Translates to: PSLKVPNRGSALMAV*RAGTVMRGHIPSVC
Trigger: ACAGACAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTCTGCACACAGCCATTAATGCCGACCCCCTGTTTGGCACTTTGAGAGATGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp GCAGGATGGGATCAGCTTCAGGATGTGGAGACCAAGCTGAAGGCATaGCTCCTTGTCTCTCCTTCCCAGGCTCTGTCAAAGCTACACTGT +
Preference number: 1 (lower is better)
Translates to: AGWDQLQDVETKLKA*LLVSPSQALSKLHC
Trigger: ACAGTGTAGCTTTGACAGAGCCTGGGAAGGAGAGACAAGGAGGCATGCCTTCAGCTTGGTCTCCACATCCTGAAGCTGATCCCATCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GGCATCAAAAGCCAGACTGCTGAAGTCCAAGTCATCTGGGCCATCTaGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTC +
Preference number: 1 (lower is better)
Translates to: GIKSQTAEVQVIWAI*VFCPDLQSCPSGQF
Trigger: GAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAGATGGCCCAGATGACTTGGACTTCAGCAGTCTGGCTTTTGATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 90 bp CTGCTGCCTTGTTCTTTGTCCTCATGGAAGGACGTTGCCTGGCTCTaGGTGTCCTCTTCATCAGAACTGTCTCTAAAGCCAGGTGGGGGA +
Preference number: 1 (lower is better)
Translates to: LLPCSLSSWKDVAWL*VSSSSELSLKPGGG
Trigger: TCCCCCACCTGGCTTTAGAGACAGTTCTGATGAAGAGGACACTCAGAGCCAGGCAACGTCCTTCCATGAGGACAAAGAACAAGGCAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 90 bp GAAGGTGGCTCCATGGTTGGGATGGCCAGGGGCTCTCTCCTCTGGTaGAATATATCTCCCTCCTTTCCCAGAAGCATCTGGAATCATGTG +
Preference number: 1 (lower is better)
Translates to: EGGSMVGMARGSLLW*NISPSFPRSIWNHV
Trigger: CACATGATTCCAGATGCTTCTGGGAAAGGAGGGAGATATATTTCACCAGAGGAGAGAGCCCCTGGCCATCCCAACCATGGAGCCACCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp TACCGGGGACCAACCAGAAGAGTTACTTCTGAGCGCTTCTCTGCCTaGACTAATGTTGCCTTGAATACACGGCCCCCATATAGTCGCAGG +
Preference number: 1 (lower is better)
Translates to: YRGPTRRVTSERFSA*TNVALNTRPPYSRR
Trigger: CCTGCGACTATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCAGGCAGAGAAGCGCTCAGAAGTAACTCTTCTGGTTGGTCCCCGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp TCAATAATGTCATCACTTGACCCGGACAGGTCAAGGATGGCTGGTTaGTTCATTTCACCCACCACGAGGTCCTCCTCGCAGCTCACCTCA +
Preference number: 1 (lower is better)
Translates to: SIMSSLDPDRSRMAG*FISPTTRSSSQLTS
Trigger: TGAGGTGAGCTGCGAGGAGGACCTCGTGGTGGGTGAAATGAACCAACCAGCCATCCTTGACCTGTCCGGGTCAAGTGATGACATTATTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp CTCTCTGTTACCCAAGCCTGGACCTCTGGGAAAGACTTTCATGGCTaGTGCTTCCATTCCACTTTTCTCTACCACCCCACCATCAGAGGC +
Preference number: 1 (lower is better)
Translates to: LSVTQAWTSGKDFHG*CFHSTFLYHPTIRG
Trigger: GCCTCTGATGGTGGGGTGGTAGAGAAAAGTGGAATGGAAGCACCAGCCATGAAAGTCTTTCCCAGAGGTCCAGGCTTGGGTAACAGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp CAGCCTCTCTGTTACCCAAGCCTGGACCTCTGGGAAAGACTTTCATaGCTGGTGCTTCCATTCCACTTTTCTCTACCACCCCACCATCAG +
Preference number: 1 (lower is better)
Translates to: QPLCYPSLDLWERLS*LVLPFHFSLPPHHQ
Trigger: CTGATGGTGGGGTGGTAGAGAAAAGTGGAATGGAAGCACCAGCCATGAAAGTCTTTCCCAGAGGTCCAGGCTTGGGTAACAGAGAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 90 bp GACAGACTTGGTCTCCATGGTTTCTGGCTCCATTTCCATGTGGTCTaGGTGAAGGATCTGCTTGGAAGGCACAACTTTGGGTGGGAGGTC +
Preference number: 1 (lower is better)
Translates to: DRLGLHGFWLHFHVV*VKDLLGRHNFGWEV
Trigger: GACCTCCCACCCAAAGTTGTGCCTTCCAAGCAGATCCTTCACTCAGACCACATGGAAATGGAGCCAGAAACCATGGAGACCAAGTCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATaGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGG +
Preference number: 1 (lower is better)
Translates to: ASAVQQPGMSYLVPT*LGLSVVDRDKRPEG
Trigger: CCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 90 bp TCTGGACAGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATaGGTTACCTGGTTCCGACATGGCTTGGGTTATCTGTGGTCGATA +
Preference number: 1 (lower is better)
Translates to: SGQFFPLLLQSNNQG*VTWFRHGLGYLWSI
Trigger: TATCGACCACAGATAACCCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 90 bp TGTGTCCTGCGTGCCTGCGTTTTTCTTGTTGGCCATGTTAAATATTaGCCTCCTGGAGTCCACAAGCAGCCGGTAGTATCCAGCTGTCAG +
Preference number: 1 (lower is better)
Translates to: CVLRACVFLVGHVKY*PPGVHKQPVVSSCQ
Trigger: CTGACAGCTGGATACTACCGGCTGCTTGTGGACTCCAGGAGGTCAATATTTAACATGGCCAACAAGAAAAACGCAGGCACGCAGGACACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTaGGCTTCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTT +
Preference number: 1 (lower is better)
Translates to: ALVALTRQSSSLASF*ASRNPSGIPYVFAF
Trigger: AAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 90 bp TCTGTAGAGAAAAATGGCCCTCACTCTGCAGGGATGACATTCGCTTaGCCAAATGGTAGTCACAAAGGCGGGCCACATTGTCTTCAGCCT +
Preference number: 1 (lower is better)
Translates to: SVEKNGPHSAGMTFA*PNGSHKGGPHCLQP
Trigger: AGGCTGAAGACAATGTGGCCCGCCTTTGTGACTACCATTTGGCCAAGCGAATGTCATCCCTGCAGAGTGAGGGCCATTTTTCTCTACAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 90 bp CCTCATCCCCATCTTCATCCTGTCCTTGGTTTAGAAAACAGTAGCTaGAGGGTCCTCGACATCTCCAGTTGCTGCTTTCCAGCTTCCGTA +
Preference number: 1 (lower is better)
Translates to: PHPHLHPVLGLENSS*RVLDISSCCFPASV
Trigger: TACGGAAGCTGGAAAGCAGCAACTGGAGATGTCGAGGACCCTTCAGCTACTGTTTTCTAAACCAAGGACAGGATGAAGATGGGGATGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 90 bp TTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTaGAGTCCAAGTCATCTGGGCCATCTGGGTCTTCTGTCCAGACCT +
Preference number: 1 (lower is better)
Translates to: LGHLFLQSGHQKPDC*SPSHLGHLGLLSRP
Trigger: AGGTCTGGACAGAAGACCCAGATGGCCCAGATGACTTGGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 90 bp GGCTTGGCACCTTTGATTCCAAGTGAATATTTGATGGTAGCAGGATaGGATCAGCTTCAGGATGTGGAGACCAAGCTGAAGGCATGCCTC +
Preference number: 1 (lower is better)
Translates to: GLAPLIPSEYLMVAG*DQLQDVETKLKACL
Trigger: GAGGCATGCCTTCAGCTTGGTCTCCACATCCTGAAGCTGATCCCATCCTGCTACCATCAAATATTCACTTGGAATCAAAGGTGCCAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 90 bp GTGATACCTGGATACTTCAAGCTGACTACACCCTTGGTTCTCTCTTaGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTA +
Preference number: 1 (lower is better)
Translates to: VIPGYFKLTTPLVLS*KVSKPTGPERILLL
Trigger: TAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTGTAGTCAGCTTGAAGTATCCAGGTATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 90 bp CAAAGGCGGGCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATaGTCACAAGAGGGAGAGTCAGTATCTTCGGGGTTATCTAAGTCT +
Preference number: 1 (lower is better)
Translates to: QRRATLSSASESLVA*SQEGESVSSGLSKS
Trigger: AGACTTAGATAACCCCGAAGATACTGACTCTCCCTCTTGTGACCATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp GTGGTCATCTGGGGCATACAGTTCCAATCAGGACCAAGGAGATTATaGTTGCCTTTATTTTCTGATCCTGTGTCCTGCGTGCCTGCGTTT +
Preference number: 1 (lower is better)
Translates to: VVIWGIQFQSGPRRL*LPLFSDPVSCVPAF
Trigger: AAACGCAGGCACGCAGGACACAGGATCAGAAAATAAAGGCAAGCATAATCTCCTTGGTCCTGATTGGAACTGTATGCCCCAGATGACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GTGATTTGGGCTTCTTGTTCGCCTTCACCAATGAAGGTGGTCATCTaGGGCATACAGTTCCAATCAGGACCAAGGAGATTATGCTTGCCT +
Preference number: 1 (lower is better)
Translates to: VIWASCSPSPMKVVI*GIQFQSGPRRLCLP
Trigger: AGGCAAGCATAATCTCCTTGGTCCTGATTGGAACTGTATGCCCCAGATGACCACCTTCATTGGTGAAGGCGAACAAGAAGCCCAAATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp CTCTGTCAAAGCTACACTGTGGTTTCCTTAATCTTGGGCAGTCGATaGCATCCATCTCTCAAAGTGCCAAACAGGGGGTCGGCATTAATG +
Preference number: 1 (lower is better)
Translates to: LCQSYTVVSLILGSR*HPSLKVPNRGSALM
Trigger: CATTAATGCCGACCCCCTGTTTGGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGTGTAGCTTTGACAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp CGATTCTTTGCAGCTCCTGACCAGGTCGATGACTCTCTCTCTTGGTaGAGCGCTGACTGCTTCATCATTAATCATTACAATCTGATCTCC +
Preference number: 1 (lower is better)
Translates to: RFFAAPDQVDDSLSW*SADCFIINHYNLIS
Trigger: GGAGATCAGATTGTAATGATTAATGATGAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTCATCGACCTGGTCAGGAGCTGCAAAGAATCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 90 bp CTGGATCTCTTCTTAACAGGTCAATGGGATCTTTGGGAACAAAACTaGTTCGGAAAAGACACCTCATCTTATGGGAGCTGGGCCTCTGTG +
Preference number: 1 (lower is better)
Translates to: LDLFLTGQWDLWEQN*FGKDTSSYGSWASV
Trigger: CACAGAGGCCCAGCTCCCATAAGATGAGGTGTCTTTTCCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCTGTTAAGAAGAGATCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp ACCCGGTGGTACCAAGTTTTGATTTGCTTTGACAAGGTGGGAGAGTaGTTTCTTGATGTTCTTCTCTTTCATGCTCTGCAGCACAGCAGA +
Preference number: 1 (lower is better)
Translates to: TRWYQVLICFDKVGE*FLDVLLFHALQHSR
Trigger: TCTGCTGTGCTGCAGAGCATGAAAGAGAAGAACATCAAGAAAGCACTCTCCCACCTTGTCAAAGCAAATCAAAACTTGGTACCACCGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp CTCTATCCCCTCAGGGGCCTCAAAGTTCTTCACATCACCTATGTTTaGATATACAGAATTTGCCACAAACTGGATGCTGTCTGTGTCTGG +
Preference number: 1 (lower is better)
Translates to: LYPLRGLKVLHITYV*IYRICHKLDAVCVW
Trigger: CCAGACACAGACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAAACATAGGTGATGTGAAGAACTTTGAGGCCCCTGAGGGGATAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 90 bp ACTTTCACTAACCGCATGCAAGCTTCTGTTAGGCAACAGAGCACTTaGAAACTGGAACTCATAGCTAGGAGCATCTCTTCTGGGCTTTTC +
Preference number: 1 (lower is better)
Translates to: TFTNRMQASVRQQST*KLELIARSISSGLF
Trigger: GAAAAGCCCAGAAGAGATGCTCCTAGCTATGAGTTCCAGTTTTCAAGTGCTCTGTTGCCTAACAGAAGCTTGCATGCGGTTAGTGAAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 90 bp TTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATaGAAGCTTCTGTTAGGCAACAGAGCACTTGAAAACTGGAACTCA +
Preference number: 1 (lower is better)
Translates to: FLAAVFQCSRLSLTA*KLLLGNRALENWNS
Trigger: TGAGTTCCAGTTTTCAAGTGCTCTGTTGCCTAACAGAAGCTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 90 bp GGCCTCAAAGTTCTTCACATCACCTATGTTTGCATATACAGAATTTaGCACAAACTGGATGCTGTCTGTGTCTGGAGTGAGGTCCAGGTT +
Preference number: 1 (lower is better)
Translates to: GLKVLHITYVCIYRI*HKLDAVCVWSEVQV
Trigger: AACCTGGACCTCACTCCAGACACAGACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAAACATAGGTGATGTGAAGAACTTTGAGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp AATCGATTCTTTGCAGCTCCTGACCAGGTCGATGACTCTCTCTCTTaGTGCAGCGCTGACTGCTTCATCATTAATCATTACAATCTGATC +
Preference number: 1 (lower is better)
Translates to: NRFFAAPDQVDDSLS*CSADCFIINHYNLI
Trigger: GATCAGATTGTAATGATTAATGATGAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTCATCGACCTGGTCAGGAGCTGCAAAGAATCGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GTTTGCATATACAGAATTTGCCACAAACTGGATGCTGTCTGTGTCTaGAGTGAGGTCCAGGTTCTTCATGTCATTGGCACTGCTGATGTA +
Preference number: 1 (lower is better)
Translates to: VCIYRICHKLDAVCV*SEVQVLHVIGTADV
Trigger: TACATCAGCAGTGCCAATGACATGAAGAACCTGGACCTCACTCCAGACACAGACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp AGCATGAGGGAGAAGTGTTCAATGCCTTTGATAGACAACTTCTCTTaGAGGGTTAAGATGACATCCTTGATGGAGGTGCTGCAGTCAAAA +
Preference number: 1 (lower is better)
Translates to: SMREKCSMPLIDNFS*RVKMTSLMEVLQSK
Trigger: TTTTGACTGCAGCACCTCCATCAAGGATGTCATCTTAACCCTGCAAGAGAAGTTGTCTATCAAAGGCATTGAACACTTCTCCCTCATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp TCTGATGACTCCATAAGTAGTGTAATGGGCTTCACATCTAGCACATaGAACTCCACCCTCACCAAGCTCTCCTCTTCAGTAAACATTTCA +
Preference number: 1 (lower is better)
Translates to: SDDSISSVMGFTSST*NSTLTKLSSSVNIS
Trigger: TGAAATGTTTACTGAAGAGGAGAGCTTGGTGAGGGTGGAGTTGCATGTGCTAGATGTGAAGCCCATTACACTACTTATGGAGTCATCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp TTAAGTTCATCTGAACTGTATGAGTTGTCGATATATAAGTGCCGGTaGTCTTTGGGACACAAGGTGCTGTCTGTCATCTCAACTGTCTTC +
Preference number: 1 (lower is better)
Translates to: LSSSELYELSIYKCR*SLGHKVLSVISTVF
Trigger: GAAGACAGTTGAGATGACAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTTATATATCGACAACTCATACAGTTCAGATGAACTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 90 bp GACCAGAGAGAAATAGCAACTGTAGACCTTGCTAGGTCTCCTGCATaGCAGGCTACAAAATGGGAAATATTGATTCTTGCTATACTACTC +
Preference number: 1 (lower is better)
Translates to: DQREIATVDLARSPA*QATKWEILILAILL
Trigger: GAGTAGTATAGCAAGAATCAATATTTCCCATTTTGTAGCCTGCCATGCAGGAGACCTAGCAAGGTCTACAGTTGCTATTTCTCTCTGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CCA 90 bp CTCACCAAGCTCTCCTCTTCAGTAAACATTTCAATCCTGTTGACATaGCTGAAGTCAGCTAAAAGAGCCACCAGATTGGTTTTGGTGTTT +
Preference number: 1 (lower is better)
Translates to: LTKLSSSVNISILLT*LKSAKRATRLVLVF
Trigger: AAACACCAAAACCAATCTGGTGGCTCTTTTAGCTGACTTCAGCCATGTCAACAGGATTGAAATGTTTACTGAAGAGGAGAGCTTGGTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp ATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTATaGATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATG +
Preference number: 1 (lower is better)
Translates to: MHYTQMCSAHNQDTV*IENKHPPHSILGNM
Trigger: CATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR GCA 90 bp CCTGTATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTaGACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCC +
Preference number: 1 (lower is better)
Translates to: PVCFFSEYALHTNVF*TQSGYSMHRKQTSS
Trigger: GGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATACAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CCA 90 bp TTTGGCATAAAAAGAAGTGAATTGTCTTTAACAGTTTCCGACACTTaGCCATTGATTATGACCTCTTCGGAAAAGCGCACTTTGACTGGA +
Preference number: 1 (lower is better)
Translates to: FGIKRSELSLTVSDT*PLIMTSSEKRTLTG
Trigger: TCCAGTCAAAGTGCGCTTTTCCGAAGAGGTCATAATCAATGGCCAAGTGTCGGAAACTGTTAAAGACAATTCACTTCTTTTTATGCCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 90 bp AGCTTTCAGGAGACAAATATAGTTTATGACCACTTCATCAATCTTTaGTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCAC +
Preference number: 1 (lower is better)
Translates to: SFQETNIVYDHFINL*YNFLPLCFSVHDFH
Trigger: GTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGATTGATGAAGTGGTCATAAACTATATTTGTCTCCTGAAAGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 90 bp ACCTTGCTAGGTCTCCTGCATGGCAGGCTACAAAATGGGAAATATTaGTTCTTGCTATACTACTCTTATTCTAAGCCATTTACAGAAATA +
Preference number: 1 (lower is better)
Translates to: TLLGLLHGRLQNGKY*FLLYYSYSKPFTEI
Trigger: TATTTCTGTAAATGGCTTAGAATAAGAGTAGTATAGCAAGAATCAATATTTCCCATTTTGTAGCCTGCCATGCAGGAGACCTAGCAAGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR GCA 90 bp TTTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATaGACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAT +
Preference number: 1 (lower is better)
Translates to: FENRPSFPCMLLFRV*TTHKCVLHTIRIQY
Trigger: ATACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CAA 90 bp GTGGGAGGTCGGTCGCTGGGCGAGCAGCCAGGCCATGGGAGGACTTaGGAGGCAAGCCCACTGAGGGGGCTTTGGAGGTGGGGAACTCTG +
Preference number: 2 (lower is better)
Translates to: VGGRSLGEQPGHGRT*EASPLRGLWRWGTL
Trigger: CAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp TGGTTCAAGCCCCAGGTTCCTGAGGGAGGTGGCCAGCCCGAAGACTaGGTCCTGTGGCAGCTGTGTGACCTCATGCCACTGAACTGCTCT +
Preference number: 2 (lower is better)
Translates to: WFKPQVPEGGGQPED*VLWQLCDLMPLNCS
Trigger: AGAGCAGTTCAGTGGCATGAGGTCACACAGCTGCCACAGGACCAAGTCTTCGGGCTGGCCACCTCCCTCAGGAACCTGGGGCTTGAACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp GCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTaGCCCTCTGCACTGGTGGGCACAGCATCAATGAGGGACACAGGG +
Preference number: 2 (lower is better)
Translates to: ASSVETTAGSSPFSH*PSALVGTASMRDTG
Trigger: CCCTGTGTCCCTCATTGATGCTGTGCCCACCAGTGCAGAGGGCAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp GGTGGGAGGTCGGTCGCTGGGCGAGCAGCCAGGCCATGGGAGGACTTTGGAGGCGAATTTGCCACAAACTaGATGCTGTCTGTGTCTGGA +
Preference number: 2 (lower is better)
Translates to: GGRSVAGRAARPWEDFGGEFATN*MLSVSG
Trigger: TCCAGACACAGACAGCATCCAGTTTGTGGCAAATTC...GCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp TCTGCACTGGTGGGCACAGCATCAATGAGGGACACAGGGATCTCCTCATTCTGCGCCAGCCCGAAGACTTaGTCCTGTGGCAGCTGTGTG +
Preference number: 2 (lower is better)
Translates to: SALVGTASMRDTGISSFCASPKT*SCGSCV
Trigger: CACACAGCTGCCACAGGACCAAGTCTTCGGGCTGGC...GCAGAATGAGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCACCAGTGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TCTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGTGGGCACAGCATCAATaGGGGACACAGGGATCTCCT +
Preference number: 2 (lower is better)
Translates to: SRASSVETTAGSSPFSHLWAQHQ*GTQGSP
Trigger: AGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCA...CAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGCACCAAGCTGAAGGCATaGCTCCTTGTCTCTCCTTCC +
Preference number: 2 (lower is better)
Translates to: LGLPVWKRRQGPVPSHTCTKLKA*LLVSPS
Trigger: GGAAGGAGAGACAAGGAGGCATGCCTTCAGCTTGGT...GCAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp GGTGGGAGGTCGGTCGCTGGGCGAGCAGCCAGGCCATGGGAGGACTTTGGAGGCGAATTTTCACTCTTCTaGTGTTCTTCTGAAAGAGCT +
Preference number: 2 (lower is better)
Translates to: GGRSVAGRAARPWEDFGGEFSLF*CSSERA
Trigger: AGCTCTTTCAGAAGAACAGCAGAAGAGTGAAAATTC...GCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCTTCTGCTGCTATGTCTaGGAGCCCTCTGGCTGGGGG +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSFCCYV*EPSGWG
Trigger: CCCCCAGCCAGAGGGCTCTCAGACATAGCAGCAGAA...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGGGGATCTCCTCATTCTaGAGGCTGCTGCCTTGTTCT +
Preference number: 2 (lower is better)
Translates to: SRASSVETTAGSSPFSHLGISSF*RLLPCS
Trigger: AGAACAAGGCAGCAGCCTGCAGAATGAGGAGATCCC...CAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TCTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGTTCTGCTCGTCTTTCTaGACTGACCTCCTGTGCTTC +
Preference number: 2 (lower is better)
Translates to: SRASSVETTAGSSPFSHLFCSSF*TDLLCF
Trigger: GAAGCACAGGAGGTCAGTTCAGAAAGACGAGCAGAA...CAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGCAAAAGCCAGACTGCTaGAGTCCAAGTCATCTGGGC +
Preference number: 2 (lower is better)
Translates to: ALVALTRQSSSLASFWASQKPDC*SPSHLG
Trigger: GCCCAGATGACTTGGACTTCAGCAGTCTGGCTTTTG...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CAGGCCATGTCTGTGAGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCATCCATGTGGTCTGAGTaGAGGATCTGCTTGGAAGGC +
Preference number: 2 (lower is better)
Translates to: QAMSVRKRSPWPSTEASSSMWSE*RICLEG
Trigger: GCCTTCCAAGCAGATCCTTCACTCAGACCACATGGA...TGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCACCAAGCTGAAGGCATaGCTCCTTGTCTCTCCTTCC +
Preference number: 2 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGTKLKA*LLVSPS
Trigger: GGAAGGAGAGACAAGGAGGCATGCCTTCAGCTTGGT...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTCACAGCCTCTCCGAATaGCTGGATTCCTTGGGAGAA +
Preference number: 2 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLHSLSE*LDSLGE
Trigger: TTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTG...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGGACATCTCCAGTTGCTaGTTTCCAGCTTCCGTAAGG +
Preference number: 2 (lower is better)
Translates to: SRASSVETTAGSSPFSHLDISSC*FPASVR
Trigger: CCTTACGGAAGCTGGAAAGCAGCAACTGGAGATGTC...CAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGGTCTTGCCAGTGGCTaGCTCAGCAGCTTTCAGGAG +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRGLASG*LSSFQE
Trigger: CTCCTGAAAGCTGCTGAGGCAGCCACTGGCAAGACC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAGATCCCCAGTGGTCTTaGCAGTGGCTGCCTCAGCAG +
Preference number: 2 (lower is better)
Translates to: RAAMVVECRIDSPILGSPDPQWS*QWLPQQ
Trigger: CTGCTGAGGCAGCCACTGGCAAGACCACTGGGGATC...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGCTCACACTTGCCCTCTaGACTGGTGGGCACAGCATC +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRLTLAL*TGGHSI
Trigger: GATGCTGTGCCCACCAGTGCAGAGGGCAAGTGTGAG...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CTCTTCTGCCAGAGGGTGATAGCCTTCATGAGTGGCCAAGAACATGCGGGAGAGGATGACTCTCTCTCTTaGTGCAGCGCTGACTGCTTC +
Preference number: 2 (lower is better)
Translates to: LFCQRVIAFMSGQEHAGEDDSLS*CSADCF
Trigger: GAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTCATC...CTCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATCACCCTCTGGCAGAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp GTAGTCACAAAGGCGGGCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATGCCACTGAGGGGGCTTTaGAGGTGGGGAACTCTGTCT +
Preference number: 2 (lower is better)
Translates to: VVTKAGHIVFSLRKLSGMPLRGL*RWGTLS
Trigger: AGACAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGG...CATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTGTGACTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp ATCAATGAGGGACACAGGGATCTCCTCATTCTGCAGGCTGCTGCCTaGTTCTTTGTCCTCATGGAAGGACGTTGCCTGGCTCTGAGTGTC +
Preference number: 2 (lower is better)
Translates to: INEGHRDLLILQAAA*FFVLMEGRCLALSV
Trigger: GACACTCAGAGCCAGGCAACGTCCTTCCATGAGGACAAAGAACAAGGCAGCAGCCTGCAGAATGAGGAGATCCCTGTGTCCCTCATTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp TGGTCACAAGAGGGAGAGTCAGTATCTTCGGGGTTATCTAAGTCTTaGGCTGAGGCTACACAGGCCATGTCTGTGAGGAAGCGGTCCCCT +
Preference number: 2 (lower is better)
Translates to: WSQEGESVSSGLSKS*AEATQAMSVRKRSP
Trigger: AGGGGACCGCTTCCTCACAGACATGGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACCCCGAAGATACTGACTCTCCCTCTTGTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGTTCGCCTTCACCAATaGAGGTGGTCATCTGGGGCA +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRVRLHQ*RWSSGA
Trigger: TGCCCCAGATGACCACCTTCATTGGTGAAGGCGAAC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TCTGCACTGGTGGGCACAGCATCAATGAGGGACACAGGGATCTCCTCATTCTGCTGTCTGTGTCTGGAGTaGGGTCCAGGTTCTTCATGT +
Preference number: 2 (lower is better)
Translates to: SALVGTASMRDTGISSFCCLCLE*GPGSSC
Trigger: ACATGAAGAACCTGGACCTCACTCCAGACACAGACA...GCAGAATGAGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCACCAGTGCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAACCAAGCTGAAGGCATaGCTCCTTGTCTCTCCTTCC +
Preference number: 2 (lower is better)
Translates to: QGRAAHWHHFGLRETHRATKLKA*LLVSPS
Trigger: GGAAGGAGAGACAAGGAGGCATGCCTTCAGCTTGGT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGGACAGTTCTTCCCCTTaGTTCTGCAGTCCAACAACC +
Preference number: 2 (lower is better)
Translates to: ALVALTRQSSSLASFWASDSSSP*FCSPTT
Trigger: GGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTC...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGGCTTTTCTCGGCCATTaGCATTTTCCTACAGGCACT +
Preference number: 2 (lower is better)
Translates to: SRASSVETTAGSSPFSHLAFLGH*HFPTGT
Trigger: AGTGCCTGTAGGAAAATGGCAATGGCCGAGAAAAGC...CAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CAGGCCATGTCTGTGAGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCATGTGTCCTGCGTGCCTaGGTTTTTCTTGTTGGCCAT +
Preference number: 2 (lower is better)
Translates to: QAMSVRKRSPWPSTEASSCVLRA*VFLVGH
Trigger: ATGGCCAACAAGAAAAACGCAGGCACGCAGGACACA...TGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTCCCTTGGTTCTCTCTTaGAAGGTCTCCAAACCTACG +
Preference number: 2 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLPLVLS*KVSKPT
Trigger: CGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGG...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGAAGACTTGGTCCTGTaGCAGCTGTGTGACCTCATG +
Preference number: 2 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWEDLVL*QLCDLM
Trigger: CATGAGGTCACACAGCTGCCACAGGACCAAGTCTTC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGTTCTGCTGCTATGTCTaGGAGCCCTCTGGCTGGGGG +
Preference number: 2 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKFCCYV*EPSGWG
Trigger: CCCCCAGCCAGAGGGCTCTCAGACATAGCAGCAGAA...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTAGAAAACAGTAGCTaGAGGGTCCTCGACATCTCC +
Preference number: 2 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGLENSS*RVLDIS
Trigger: GGAGATGTCGAGGACCCTTCAGCTACTGTTTTCTAA...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCTGAGGACTAAGAGTTaGAGGCTGAGCTGTGCTTCC +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSLRTKS*RLSCAS
Trigger: GGAAGCACAGCTCAGCCTTCAACTCTTAGTCCTCAG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCAGCCCTTCATGGAGCTaGGGACTAAGAGTTGAAGGC +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSSPSWS*GLRVEG
Trigger: GCCTTCAACTCTTAGTCCTCAGCTCCATGAAGGGCT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CTCTTCTGCCAGAGGGTGATAGCCTTCATGAGTGGCCAAGAACATGCGGGAGAGTGTCATTGGCACTGCTaGTGTAGAGATTCCTCTGCT +
Preference number: 2 (lower is better)
Translates to: LFCQRVIAFMSGQEHAGECHWHC*CRDSSA
Trigger: AGCAGAGGAATCTCTACATCAGCAGTGCCAATGACA...CTCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATCACCCTCTGGCAGAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAGACAGTTCTTCCCCTTaGTTCTGCAGTCCAACAACC +
Preference number: 2 (lower is better)
Translates to: QGRAAHWHHFGLRETHRADSSSP*FCSPTT
Trigger: GGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTC...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGCTCTGTCTGCTCTTCTaGCAGAGGGTGATAGCCTTC +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRLCLLF*QRVIAF
Trigger: GAAGGCTATCACCCTCTGGCAGAAGAGCAGACAGAG...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTTTGATGGTAGCAGGATaGGATCAGCTTCAGGATGTG +
Preference number: 2 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLLMVAG*DQLQDV
Trigger: CACATCCTGAAGCTGATCCCATCCTGCTACCATCAA...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGCCTCTCCGAATGCCTaGATTCCTTGGGAGAAATCA +
Preference number: 2 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWASPNA*IPWEKS
Trigger: TGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCCCCTTGGTTCTCTCTTaGAAGGTCTCCAAACCTACG +
Preference number: 2 (lower is better)
Translates to: LVSFFPRGSSARLSELTSPLVLS*KVSKPT
Trigger: CGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGG...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCACCCTTGGTTCTCTCTTaGAAGGTCTCCAAACCTACG +
Preference number: 2 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAPLVLS*KVSKPT
Trigger: CGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGG...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGTCAGAGCTGTCCCTCTaGACAGTTCTTCCCCTTGCT +
Preference number: 2 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWSELSL*TVLPLA
Trigger: AGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCTGA...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp GTAGTCACAAAGGCGGGCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATGAGACACCTCATCTTATaGGAGCTGGGCCTCTGTGTC +
Preference number: 2 (lower is better)
Translates to: VVTKAGHIVFSLRKLSGMRHLIL*ELGLCV
Trigger: GACACAGAGGCCCAGCTCCCATAAGATGAGGTGTCT...CATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTGTGACTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp TCCTGTGCTTCTGTGATACCTGGATACTTCAAGCTGACTACACCCTaGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGG +
Preference number: 2 (lower is better)
Translates to: SCASVIPGYFKLTTP*VLSWKVSKPTGPER
Trigger: CCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTGTAGTCAGCTTGAAGTATCCAGGTATCACAGAAGCACAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 90 bp TGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTaGGGCTTCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTT +
Preference number: 2 (lower is better)
Translates to: CLGCPHKAEQLIGII*GFEKPIGHSICVCL
Trigger: AAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 90 bp AGTGTAAGGTCATATGTTTCAGGGCGTGACTCCTCCTTCCTTGCCTaGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGG +
Preference number: 2 (lower is better)
Translates to: SVRSYVSGRDSSFLA*VALTRQSSSLASFW
Trigger: CCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGGAAGGAGGAGTCACGCCCTGAAACATATGACCTTACACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 90 bp AGAAGAGTTACTTCTGAGCGCTTCTCTGCCTGCACTAATGTTGCCTaGAATACACGGCCCCCATATAGTCGCAGGTCGCTGAGGAACTTG +
Preference number: 2 (lower is better)
Translates to: RRVTSERFSACTNVA*NTRPPYSRRSLRNL
Trigger: CAAGTTCCTCAGCGACCTGCGACTATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCAGGCAGAGAAGCGCTCAGAAGTAACTCTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCATGGGGGACCTTTTGTaGAACTTTCCCTCAGAGATA +
Preference number: 2 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGMGDLL*NFPSEI
Trigger: TATCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCAT...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGGTCCTATACACCTTTaGGTCTTTATGAGACATGGG +
Preference number: 2 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLGPIHL*VFMRHG
Trigger: CCCATGTCTCATAAAGACTCAAAGGTGTATAGGACC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATCTCCAGTTGCTaGTTTCCAGCTTCCGTAAGG +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSDISSC*FPASVR
Trigger: CCTTACGGAAGCTGGAAAGCAGCAACTGGAGATGTC...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGCTCGACATCTCCAGTTaGTGCTTTCCAGCTTCCGTA +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRLDISS*CFPASV
Trigger: TACGGAAGCTGGAAAGCAGCAACTGGAGATGTCGAG...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCTGCACTGGTGGGCACAGCATCAATGAGGGACACAGGGATCTCCTCATTCTGCCTTTCACTAACCGCATaGAAGCTTCTGTTAGGCAAC +
Preference number: 2 (lower is better)
Translates to: SALVGTASMRDTGISSFCLSLTA*KLLLGN
Trigger: GTTGCCTAACAGAAGCTTGCATGCGGTTAGTGAAAG...GCAGAATGAGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCACCAGTGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCTCTGATCCTGTGTCCTaGGTGCCTGCGTTTTTCTTG +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSSDPVS*VPAFFL
Trigger: CAAGAAAAACGCAGGCACGCAGGACACAGGATCAGA...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGTCGCGGAGATTCCTGTaGTTTCTTCAGAGTGTCTGG +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRSRRFL*FLQSVW
Trigger: CCAGACACTCTGAAGAAAGCACAGGAATCTCCGCGA...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGTCAGAGCTGTCCCTCTaGACAGTTCTTCCCCTTGCT +
Preference number: 2 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMSELSL*TVLPLA
Trigger: AGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCTGA...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGGTCATCTGGGCCATCTaGGTCTTCTGTCCAGACCTT +
Preference number: 2 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMVIWAI*VFCPDL
Trigger: AAGGTCTGGACAGAAGACCCAGATGGCCCAGATGAC...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGGCAGAGCAGCTCATTaGCATCATTTTGGGCTTCGA +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSGRAAH*HHFGLR
Trigger: TCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCC...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCTTTATGCTGACACAATaGAATCTGCCCACCCCTGCC +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSFMLTQ*NLPTPA
Trigger: GGCAGGGGTGGGCAGATTCCATTGTGTCAGCATAAA...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTTTCTGCTGCTATGTCTaGGAGCCCTCTGGCTGGGGG +
Preference number: 2 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILFCCYV*EPSGWG
Trigger: CCCCCAGCCAGAGGGCTCTCAGACATAGCAGCAGAA...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp GTAGTCACAAAGGCGGGCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATGCTGGATACTTCAAGCTaGCTACACCCTTGGTTCTCT +
Preference number: 2 (lower is better)
Translates to: VVTKAGHIVFSLRKLSGMLDTSS*LHPWFS
Trigger: AGAGAACCAAGGGTGTAGTCAGCTTGAAGTATCCAG...CATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTGTGACTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCTGGATACTTCAAGCTaGCTACACCCTTGGTTCTCT +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSLDTSS*LHPWFS
Trigger: AGAGAACCAAGGGTGTAGTCAGCTTGAAGTATCCAG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAATGGGGGACCTTTTGTaGAACTTTCCCTCAGAGATA +
Preference number: 2 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAMGDLL*NFPSEI
Trigger: TATCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCAT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCACCTTTGAGTCTTTATaGGACATGGGGGACCTTTTG +
Preference number: 2 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLTFESL*DMGDLL
Trigger: CAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGGT...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCATCCAACAACCAGGGATaGGTTACCTGGTTCCGACAT +
Preference number: 2 (lower is better)
Translates to: RAAMVVECRIDSPILGSPSNNQG*VTWFRH
Trigger: ATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGA...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CAGGCCATGTCTGTGAGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCACTCATCTTCATCTTCTaGATCGTCCGTATTTTCTGC +
Preference number: 2 (lower is better)
Translates to: QAMSVRKRSPWPSTEASSLIFIF*IVRIFC
Trigger: GCAGAAAATACGGACGATGCAGAAGATGAAGATGAG...TGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCAATGCCTGGATTCCTTaGGAGAAATCATTAGGGTCT +
Preference number: 2 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGNAWIP*EKSLGS
Trigger: AGACCCTAATGATTTCTCCCAAGGAATCCAGGCATT...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCATTACAAGAGCGGCCATaGTGGTTGAATGTCGCATCG +
Preference number: 2 (lower is better)
Translates to: RAAMVVECRIDSPILGSPLQERP*WLNVAS
Trigger: CGATGCGACATTCAACCACCATGGCCGCTCTTGTAA...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CACTGTGGTTTCCTTAATCTTGGGCAGTCGATGGCATCCATCTCTCAAAGTGCCATTGTCATCTCCTTCTaGAGGAGGCAGGGTTGTGAG +
Preference number: 2 (lower is better)
Translates to: HCGFLNLGQSMASISQSAIVISF*RRQGCE
Trigger: CTCACAACCCTGCCTCCTCCAGAAGGAGATGACAAT...GGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp CTAGATTTGAAATTTTGTCCCAGTAGTAGGCTGTCTTTCCACGTTTaGTTGCTAGCCATGCTCCTGTCAGAGAGGGGCAACAGGAAGCCC +
Preference number: 2 (lower is better)
Translates to: LDLKFCPSSRLSFHV*LLAMLLSERGNRKP
Trigger: GGGCTTCCTGTTGCCCCTCTCTGACAGGAGCATGGCTAGCAACAAAACGTGGAAAGACAGCCTACTACTGGGACAAAATTTCAAATCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CAA 90 bp CCTTTATTTTCTGATCCTGTGTCCTGCGTGCCTGCGTTTTTCTTGTaGGCCATGTTAAATATTGACCTCCTGGAGTCCACAAGCAGCCGG +
Preference number: 2 (lower is better)
Translates to: PLFSDPVSCVPAFFL*AMLNIDLLESTSSR
Trigger: CCGGCTGCTTGTGGACTCCAGGAGGTCAATATTTAACATGGCCAACAAGAAAAACGCAGGCACGCAGGACACAGGATCAGAAAATAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp AAAGTGCTGAGGTGTGGATTGTCTCTTGAAGACACAGTGCCAGCTTaGCCTTTGGTGTCCTCCTCTATCTCTGCTATTTTGGTTCCCTGC +
Preference number: 2 (lower is better)
Translates to: KVLRCGLSLEDTVPA*PLVSSSISAILVPC
Trigger: GCAGGGAACCAAAATAGCAGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAGACAATCCACACCTCAGCACTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp TTGCGAAAGGCAGTTCTCTCTAGGTTAAAAGTGCTGAGGTGTGGATaGTCTCTTGAAGACACAGTGCCAGCTTTGCCTTTGGTGTCCTCC +
Preference number: 2 (lower is better)
Translates to: LRKAVLSRLKVLRCG*SLEDTVPALPLVSS
Trigger: GGAGGACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAGACAATCCACACCTCAGCACTTTTAACCTAGAGAGAACTGCCTTTCGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTACCTTTGATTCCAAGTaGATATTTGATGGTAGCAGG +
Preference number: 2 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLTFDSK*IFDGSR
Trigger: CCTGCTACCATCAAATATTCACTTGGAATCAAAGGT...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCAAATCATTAGGGTCTTaGTTTGGGCTTGGCACCTTT +
Preference number: 2 (lower is better)
Translates to: LVSFFPRGSSARLSELTSKSLGS*FGLGTF
Trigger: AAAGGTGCCAAGCCCAAATCAAGACCCTAATGATTT...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACTGGATACTTCAAGCTaGCTACACCCTTGGTTCTCT +
Preference number: 2 (lower is better)
Translates to: RAAMVVECRIDSPILGSPLDTSS*LHPWFS
Trigger: AGAGAACCAAGGGTGTAGTCAGCTTGAAGTATCCAG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGAGGCAACAGAGCACTTaGAAACTGGAACTCATAGCT +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRRQQST*KLELIA
Trigger: AGCTATGAGTTCCAGTTTTCAAGTGCTCTGTTGCCT...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACTTCCTTGCCTTGGTTaGCCTCACAAGGCAGAGCAG +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRLPCLG*PHKAEQ
Trigger: CTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGGAAG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCTTTCACTAACCGCATaGAAGCTTCTGTTAGGCAAC +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSLSLTA*KLLLGN
Trigger: GTTGCCTAACAGAAGCTTGCATGCGGTTAGTGAAAG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CAGGCCATGTCTGTGAGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCATTTGCTACAATTTCTTaGCGCTGTGTTTCAGTGTTC +
Preference number: 2 (lower is better)
Translates to: QAMSVRKRSPWPSTEASSFATIS*RCVSVF
Trigger: GAACACTGAAACACAGCGGCAAGAAATTGTAGCAAA...TGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAGGTCTTGCCAGTGGCTaGCTCAGCAGCTTTCAGGAG +
Preference number: 2 (lower is better)
Translates to: IRIQYASKTNILHTVSWAGLASG*LSSFQE
Trigger: CTCCTGAAAGCTGCTGAGGCAGCCACTGGCAAGACC...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CTCTTCTGCCAGAGGGTGATAGCCTTCATGAGTGGCCAAGAACATGCGGGAGAGGTCATCAAATGGGATTaGCTGTGTCATGTGATTGAT +
Preference number: 2 (lower is better)
Translates to: LFCQRVIAFMSGQEHAGEVIKWD*LCHVID
Trigger: ATCAATCACATGACACAGGCAATCCCATTTGATGAC...CTCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATCACCCTCTGGCAGAAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CAGGCCATGTCTGTGAGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCAATAGACAACTTCTCTTaGAGGGTTAAGATGACATCC +
Preference number: 2 (lower is better)
Translates to: QAMSVRKRSPWPSTEASSIDNFS*RVKMTS
Trigger: GGATGTCATCTTAACCCTGCAAGAGAAGTTGTCTAT...TGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGACAAGGTGGGAGAGTaGTTTCTTGATGTTCTTCTC +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRDKVGE*FLDVLL
Trigger: GAGAAGAACATCAAGAAAGCACTCTCCCACCTTGTC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCGAGTGGCCAAGAACATaGGGGAGAGGCTTTCCGACT +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSEWPRT*GRGFPT
Trigger: AGTCGGAAAGCCTCTCCCGCATGTTCTTGGCCACTC...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAGAGCAGGCACTGTCATaGGTGGACACATCCCTTCTG +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQREQALS*VDTSLL
Trigger: CAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTC...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCAATGCCTGGATTCCTTaGGAGAAATCATTAGGGTCT +
Preference number: 2 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFNAWIP*EKSLGS
Trigger: AGACCCTAATGATTTCTCCCAAGGAATCCAGGCATT...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCTGCTTCTGTGATACCTaGATACTTCAAGCTGACTAC +
Preference number: 2 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLCFCDT*ILQADY
Trigger: GTAGTCAGCTTGAAGTATCCAGGTATCACAGAAGCA...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAAGTGCATTGAGCTTTaGGAAAAACTTTTGGTGAGC +
Preference number: 2 (lower is better)
Translates to: ALVALTRQSSSLASFWASKCIEL*EKLLVS
Trigger: GCTCACCAAAAGTTTTTCCCAAAGCTCAATGCACTT...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGTCAGAGCTGTCCCTCTaGACAGTTCTTCCCCTTGCT +
Preference number: 2 (lower is better)
Translates to: FAFRAFILAIRASKARLLSELSL*TVLPLA
Trigger: AGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCTGA...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCTCATTGGCATCATTTTaGGCTTCGAGAAACCCATCG +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSSLASF*ASRNPS
Trigger: CGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGA...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGCGAGCAGCCAGGCCATaGGAGGACTTTGGAGGCAAG +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRRAARP*EDFGGK
Trigger: CTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCG...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp CCCCATTCTTTCTCAATGTATTTGAGGGAGATTTTCTGCGTCTGTTaGGTGGTGACAGTAGCAATGTACATTTGTAACGCGGCCAGCCGC +
Preference number: 2 (lower is better)
Translates to: PHSFSMYLREIFCVC*VVTVAMYICNAASR
Trigger: GCGGCTGGCCGCGTTACAAATGTACATTGCTACTGTCACCACCAAACAGACGCAGAAAATCTCCCTCAAATACATTGAGAAAGAATGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp CTGTTGACATGGCTGAAGTCAGCTAAAAGAGCCACCAGATTGGTTTaGGTGTTTATGACATGGCTTATGCCATACCGGGGACCAACCAGA +
Preference number: 2 (lower is better)
Translates to: LLTWLKSAKRATRLV*VFMTWLMPYRGPTR
Trigger: TCTGGTTGGTCCCCGGTATGGCATAAGCCATGTCATAAACACCAAAACCAATCTGGTGGCTCTTTTAGCTGACTTCAGCCATGTCAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp CTGAGGTGTGGATTGTCTCTTGAAGACACAGTGCCAGCTTTGCCTTaGGTGTCCTCCTCTATCTCTGCTATTTTGGTTCCCTGCTGTTTT +
Preference number: 2 (lower is better)
Translates to: LRCGLSLEDTVPALP*VSSSISAILVPCCF
Trigger: AAAACAGCAGGGAACCAAAATAGCAGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAGACAATCCACACCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACTTCTGCTGCTATGTCTaGGAGCCCTCTGGCTGGGGG +
Preference number: 2 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHFCCYV*EPSGWG
Trigger: CCCCCAGCCAGAGGGCTCTCAGACATAGCAGCAGAA...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGTTCTGCTCGTCTTTCTaGACTGACCTCCTGTGCTTC +
Preference number: 2 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKFCSSF*TDLLCF
Trigger: GAAGCACAGGAGGTCAGTTCAGAAAGACGAGCAGAA...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCCTGTGGCAGCTGTGTaGCCTCATGCCACTGAACTG +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSPVAAV*PHATEL
Trigger: CAGTTCAGTGGCATGAGGTCACACAGCTGCCACAGG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAGACTTTCATGGCTGGTaGTTCCATTCCACTTTTCTC +
Preference number: 2 (lower is better)
Translates to: RAAMVVECRIDSPILGSPDFHGW*FHSTFL
Trigger: GAGAAAAGTGGAATGGAAGCACCAGCCATGAAAGTC...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCGCCTCTCCGAATGCCTaGATTCCTTGGGAGAAATCA +
Preference number: 2 (lower is better)
Translates to: FRAFILAIRASKARLLKSASPNA*IPWEKS
Trigger: TGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGC...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTCCCTTGGTTCTCTCTTaGAAGGTCTCCAAACCTACG +
Preference number: 2 (lower is better)
Translates to: SYRHFPTVWTQWITVACTPLVLS*KVSKPT
Trigger: CGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGG...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCTGCTTCTGTGATACCTaGATACTTCAAGCTGACTAC +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSCFCDT*ILQADY
Trigger: GTAGTCAGCTTGAAGTATCCAGGTATCACAGAAGCA...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCAGTCTTTATGAGACATaGGGGACCTTTTGTGAAACT +
Preference number: 2 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLSLYET*GTFCET
Trigger: AGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACT...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGGCAGAGCAGCTCATTaGCATCATTTTGGGCTTCGA +
Preference number: 2 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKGRAAH*HHFGLR
Trigger: TCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTACCGAGGGTCATCAAATaGGATTGCCTGTGTCATGTG +
Preference number: 2 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLPRVIK*DCLCHV
Trigger: CACATGACACAGGCAATCCCATTTGATGACCCTCGG...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp AGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTaGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCT +
Preference number: 2 (lower is better)
Translates to: SCCFPASVRVGSYTP*SLYETWGTFCETFP
Trigger: AGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 90 bp TTGCCTTTATTTTCTGATCCTGTGTCCTGCGTGCCTGCGTTTTTCTaGTTGGCCATGTTAAATATTGACCTCCTGGAGTCCACAAGCAGC +
Preference number: 2 (lower is better)
Translates to: LPLFSDPVSCVPAFF*LAMLNIDLLESTSS
Trigger: GCTGCTTGTGGACTCCAGGAGGTCAATATTTAACATGGCCAACAAGAAAAACGCAGGCACGCAGGACACAGGATCAGAAAATAAAGGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp CCTCTATCCCCTCAGGGGCCTCAAAGTTCTTCACATCACCTATGTTaGCATATACAGAATTTGCCACAAACTGGATGCTGTCTGTGTCTG +
Preference number: 2 (lower is better)
Translates to: PLSPQGPQSSSHHLC*HIQNLPQTGCCLCL
Trigger: CAGACACAGACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAAACATAGGTGATGTGAAGAACTTTGAGGCCCCTGAGGGGATAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGATGTGCCTCAGTTTCCTaGACTGTAAGTGGGGACACT +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRCASVS*TVSGDT
Trigger: AGTGTCCCCACTTACAGTTCAGGAAACTGAGGCACA...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGATCAGCTTGCCTTCTaGGGGGCCACCTGGTGTTAC +
Preference number: 2 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVDQLAF*GATWCY
Trigger: GTAACACCAGGTGGCCCCTCAGAAGGCAAGCTGATC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTACCCTTGGCCAAGTACTaGAGCATCATCAGCCCCTCC +
Preference number: 2 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVPLAKY*SIISPS
Trigger: GGAGGGGCTGATGATGCTTCAGTACTTGGCCAAGGG...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTACAGCCTGTGTCCACTaGAGAGCCTTGAGAGCTCTG +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSTACVH*RALRAL
Trigger: CAGAGCTCTCAAGGCTCTTCAGTGGACACAGGCTGT...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGTCTTGCCAGTGGCTaGCTCAGCAGCTTTCAGGAG +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCGLASG*LSSFQE
Trigger: CTCCTGAAAGCTGCTGAGGCAGCCACTGGCAAGACC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACTCATGCCACTGAACTaGTCTGTGCCTCAGTTTCCT +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRLMPLN*SVPQFP
Trigger: AGGAAACTGAGGCACAGAGCAGTTCAGTGGCATGAG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGCATCTGGAATCATGTaGTTCCCCATGGACGGGCAG +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSASGIM*FPMDGQ
Trigger: CTGCCCGTCCATGGGGAAGCACATGATTCCAGATGC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAATCCATCTCTCAAAGTaGCAAACAGGGGGTCGGCAT +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRIHLSK*QTGGRH
Trigger: ATGCCGACCCCCTGTTTGGCACTTTGAGAGATGGAT...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGAGTCTTTATGAGACATaGGGGACCTTTTGTGAAACT +
Preference number: 2 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWSLYET*GTFCET
Trigger: AGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACT...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCGGCAGAGCAGCTCATTaGCATCATTTTGGGCTTCGA +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSGRAAH*HHFGLR
Trigger: TCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCC...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGACTGTCTGGACTCAATaGATAACAGTTGCTTGTACT +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRTVWTQ*ITVACT
Trigger: AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGT...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGAAAGGGCTAGGGAATaGCAGGACCAAAATTTAAAT +
Preference number: 2 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRERARE*QDQNLN
Trigger: ATTTAAATTTTGGTCCTGCCATTCCCTAGCCCTTTC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAACAGTTTCCGACACTTaGCCATTGATTATGACCTCT +
Preference number: 2 (lower is better)
Translates to: RAAMVVECRIDSPILGSPTVSDT*PLIMTS
Trigger: AGAGGTCATAATCAATGGCCAAGTGTCGGAAACTGT...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCGATAGCCTTCATGAGTaGCCAAGAACATGCGGGAGA +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSDSLHE*PRTCGR
Trigger: TCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATC...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTTGGAAGGCACAACTTTaGGTGGGAGGTCGGTCGCTG +
Preference number: 2 (lower is better)
Translates to: TVCIENKHPPHSILGNMFWKAQL*VGGRSL
Trigger: CAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCA...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp CATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGTGTTaGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCA +
Preference number: 2 (lower is better)
Translates to: HHFGLRETHRAFHMC*PLGHLFLQSGHQKP
Trigger: TGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 90 bp TCCACCCTCACCAAGCTCTCCTCTTCAGTAAACATTTCAATCCTGTaGACATGGCTGAAGTCAGCTAAAAGAGCCACCAGATTGGTTTTG +
Preference number: 2 (lower is better)
Translates to: STLTKLSSSVNISIL*TWLKSAKRATRLVL
Trigger: CAAAACCAATCTGGTGGCTCTTTTAGCTGACTTCAGCCATGTCAACAGGATTGAAATGTTTACTGAAGAGGAGAGCTTGGTGAGGGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCAGGAATTGGGGAGCTTaGCTACAGAGTGATCCAGAA +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSRNWGA*LQSDPE
Trigger: TTCTGGATCACTCTGTAGTCAAGCTCCCCAATTCCT...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGTGACCTCATGCCACTaGACTGCTCTGTGCCTCAGT +
Preference number: 2 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVVTSCH*TALCLS
Trigger: ACTGAGGCACAGAGCAGTTCAGTGGCATGAGGTCAC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCTCACTCTGCAGGGATaGCATTCGCTTGGCCAAATG +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSLTLQG*HSLGQM
Trigger: CATTTGGCCAAGCGAATGTCATCCCTGCAGAGTGAG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTCTTCCTTGCCTTGGTTaGCCTCACAAGGCAGAGCAG +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCLPCLG*PHKAEQ
Trigger: CTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGGAAG...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTCTTCCTTGCCTTGGTTaGCCTCACAAGGCAGAGCAG +
Preference number: 2 (lower is better)
Translates to: TVCIENKHPPHSILGNMFLPCLG*PHKAEQ
Trigger: CTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGGAAG...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CACTGTGGTTTCCTTAATCTTGGGCAGTCGATGGCATCCATCTCTCAAAGTGCCCACTTCATCAATCTTTaGTACAATTTCTTGCCGCTG +
Preference number: 2 (lower is better)
Translates to: HCGFLNLGQSMASISQSAHFINL*YNFLPL
Trigger: CAGCGGCAAGAAATTGTAGCAAAGATTGATGAAGTG...GGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAGGTCTTGCCAGTGGCTaGCTCAGCAGCTTTCAGGAG +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKGLASG*LSSFQE
Trigger: CTCCTGAAAGCTGCTGAGGCAGCCACTGGCAAGACC...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGGACTCTCTCTCTTGGTaGAGCGCTGACTGCTTCATC +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRDSLSW*SADCFI
Trigger: GATGAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTC...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGCTCATGGAAGGACGTTaGCTGGCTCTGAGTGTCCTC +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQLMEGR*LALSVL
Trigger: GAGGACACTCAGAGCCAGGCAACGTCCTTCCATGAG...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCATTCTGCAGGCTGCTaGCTTGTTCTTTGTCCTCAT +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSHSAGC*LVLCPH
Trigger: ATGAGGACAAAGAACAAGGCAGCAGCCTGCAGAATG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAAAGTGCATTGAGCTTTaGGAAAAACTTTTGGTGAGC +
Preference number: 2 (lower is better)
Translates to: RAAMVVECRIDSPILGSPKCIEL*EKLLVS
Trigger: GCTCACCAAAAGTTTTTCCCAAAGCTCAATGCACTT...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGTCATTGGCATCATTTTaGGCTTCGAGAAACCCATCG +
Preference number: 2 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKSLASF*ASRNPS
Trigger: CGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGA...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCTCCACACAGTATCTTaGGCAATATGTTTAACACAA +
Preference number: 2 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSLHTVS*AICLTQ
Trigger: TTGTGTTAAACATATTGCCCAAGATACTGTGTGGAG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTCACCTTTCGTGGAGCTaGGGGGATGATTTGGCAGCT +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCHLSWS*GDDLAA
Trigger: AGCTGCCAAATCATCCCCCCAGCTCCACGAAAGGTG...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp TCATCTGAACTGTATGAGTTGTCGATATATAAGTGCCGGTGCTCTTaGGGACACAAGGTGCTGTCTGTCATCTCAACTGTCTTCTGCTTA +
Preference number: 2 (lower is better)
Translates to: SSELYELSIYKCRCS*GHKVLSVISTVFCL
Trigger: TAAGCAGAAGACAGTTGAGATGACAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTTATATATCGACAACTCATACAGTTCAGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGTTCTGCTCGTCTTTCTaGACTGACCTCCTGTGCTTC +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRFCSSF*TDLLCF
Trigger: GAAGCACAGGAGGTCAGTTCAGAAAGACGAGCAGAA...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAATGGGGGACCTTTTGTaGAACTTTCCCTCAGAGATA +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRMGDLL*NFPSEI
Trigger: TATCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCAT...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCACCTTTGAGTCTTTATaGGACATGGGGGACCTTTTG +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSTFESL*DMGDLL
Trigger: CAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGGT...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTATATGTTTCAGGGCGTaGCTCCTCCTTCCTTGCCTT +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSICFRA*LLLPCL
Trigger: AAGGCAAGGAAGGAGGAGTCACGCCCTGAAACATAT...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CACTGTGGTTTCCTTAATCTTGGGCAGTCGATGGCATCCATCTCTCAAAGTGCCTATTTAAAAGCATCTTaGGAGAACGTGTTAGTGTGC +
Preference number: 2 (lower is better)
Translates to: HCGFLNLGQSMASISQSAYLKAS*ENVLVC
Trigger: GCACACTAACACGTTCTCTCAAGATGCTTTTAAATA...GGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAACTAAGAGTTGAAGGCTaGGCTGTGCTTCCCAGGTGC +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKLRVEG*AVLPRC
Trigger: GCACCTGGGAAGCACAGCTCAGCCTTCAACTCTTAG...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTCTGAGGACTAAGAGTTaGAGGCTGAGCTGTGCTTCC +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCLRTKS*RLSCAS
Trigger: GGAAGCACAGCTCAGCCTTCAACTCTTAGTCCTCAG...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGCTGAGGACTAAGAGTTaGAGGCTGAGCTGTGCTTCC +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQLRTKS*RLSCAS
Trigger: GGAAGCACAGCTCAGCCTTCAACTCTTAGTCCTCAG...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGCTTGCCTTTATTTTCTaGTCCTGTGTCCTGCGTGCC +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRLAFIF*SCVLRA
Trigger: GGCACGCAGGACACAGGATCAGAAAATAAAGGCAAG...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCACAGGAATATGCTACTaGCCCCATATGCAGTTTGCT +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSTGICY*PHMQFA
Trigger: AGCAAACTGCATATGGGGTCAGTAGCATATTCCTGT...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTACCAAGCTGAAGGCATaGCTCCTTGTCTCTCCTTCC +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCTKLKA*LLVSPS
Trigger: GGAAGGAGAGACAAGGAGGCATGCCTTCAGCTTGGT...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTTGGTGCAGCGCTGACTaGTTCATCATTAATCATTAC +
Preference number: 2 (lower is better)
Translates to: SYRHFPTVWTQWITVACTWCSAD*FIINHY
Trigger: GTAATGATTAATGATGAAGCAGTCAGCGCTGCACCA...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGCCCCTTCAATTCTCTaGTCCAGCATGAGGGAGAAG +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCAPSIL*SSMREK
Trigger: CTTCTCCCTCATGCTGGAGCAGAGAATTGAAGGGGC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTTTGATGGTAGCAGGATaGGATCAGCTTCAGGATGTG +
Preference number: 2 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILLMVAG*DQLQDV
Trigger: CACATCCTGAAGCTGATCCCATCCTGCTACCATCAA...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGCCTCTCCGAATGCCTaGATTCCTTGGGAGAAATCA +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSASPNA*IPWEKS
Trigger: TGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAACCTCCTTCCTTGCCTTaGTTGCCCTCACAAGGCAGA +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKPPSLP*LPSQGR
Trigger: TCTGCCTTGTGAGGGCAACCAAGGCAAGGAAGGAGG...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCTTTGCTGAGTCTCTGTaGAATGAATGGCTGACCAGA +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSFAESL*NEWLTR
Trigger: TCTGGTCAGCCATTCATTCCACAGAGACTCAGCAAA...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGGCCACATACCATCTTTaGCTGTCCTTGCGAAAGGCA +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRATYHL*LSLRKA
Trigger: TGCCTTTCGCAAGGACAGCCAAAGATGGTATGTGGC...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 90 bp CTCAACTGTCTTCTGCTTAGAATCTATATATGTGATTTGGGCTTCTaGTTCGCCTTCACCAATGAAGGTGGTCATCTGGGGCATACAGTT +
Preference number: 2 (lower is better)
Translates to: LNCLLLRIYICDLGF*FAFTNEGGHLGHTV
Trigger: AACTGTATGCCCCAGATGACCACCTTCATTGGTGAAGGCGAACAAGAAGCCCAAATCACATATATAGATTCTAAGCAGAAGACAGTTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCTGGATACTTCAAGCTaGCTACACCCTTGGTTCTCT +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSLDTSS*LHPWFS
Trigger: AGAGAACCAAGGGTGTAGTCAGCTTGAAGTATCCAG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCACCTTTGAGTCTTTATaGGACATGGGGGACCTTTTG +
Preference number: 2 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTTFESL*DMGDLL
Trigger: CAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGGT...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGTTAGAAAACAGTAGCTaGAGGGTCCTCGACATCTCC +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRLENSS*RVLDIS
Trigger: GGAGATGTCGAGGACCCTTCAGCTACTGTTTTCTAA...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGTCCAACAACCAGGGATaGGTTACCTGGTTCCGACAT +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQSNNQG*VTWFRH
Trigger: ATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGA...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTTCCAACAACCAGGGATaGGTTACCTGGTTCCGACAT +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCSNNQG*VTWFRH
Trigger: ATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGA...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAACAAAAGCCAGACTGCTaGAGTCCAAGTCATCTGGGC +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKQKPDC*SPSHLG
Trigger: GCCCAGATGACTTGGACTTCAGCAGTCTGGCTTTTG...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TGGTTAAGTTCATCTGAACTGTATGAGTTGTCGATATATAAGTGCCGGTGCTCTCGGAAAAGCGCACTTTaGCTGGATTGGACTTCAATC +
Preference number: 2 (lower is better)
Translates to: WLSSSELYELSIYKCRCSRKSAL*LDWTSI
Trigger: GATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCG...AGAGCACCGGCACTTATATATCGACAACTCATACAGTTCAGATGAACTTAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACAGTGTCTCCTGTTCATaGAGCAAGAGCAGCTTGGTG +
Preference number: 2 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHSVSCS*SKSSLV
Trigger: CACCAAGCTGCTCTTGCTTCATGAACAGGAGACACT...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGACATCTCCAGTTGCTaGTTTCCAGCTTCCGTAAGG +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQDISSC*FPASVR
Trigger: CCTTACGGAAGCTGGAAAGCAGCAACTGGAGATGTC...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACCTCGACATCTCCAGTTaGTGCTTTCCAGCTTCCGTA +
Preference number: 2 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHLDISS*CFPASV
Trigger: TACGGAAGCTGGAAAGCAGCAACTGGAGATGTCGAG...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATCTCGACATCTCCAGTTaGTGCTTTCCAGCTTCCGTA +
Preference number: 2 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNLDISS*CFPASV
Trigger: TACGGAAGCTGGAAAGCAGCAACTGGAGATGTCGAG...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGAGAACGTGTTAGTGTaGTTACAAGAGCGGCCATGG +
Preference number: 2 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVENVLV*LQERPW
Trigger: CCATGGCCGCTCTTGTAAGCACACTAACACGTTCTC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGAGAACGTGTTAGTGTaGTTACAAGAGCGGCCATGG +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCENVLV*LQERPW
Trigger: CCATGGCCGCTCTTGTAAGCACACTAACACGTTCTC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGTTCACATCTAGCACATaGAACTCCACCCTCACCAAG +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRFTSST*NSTLTK
Trigger: CTTGGTGAGGGTGGAGTTGCATGTGCTAGATGTGAA...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGCTCCCTCAGGAAGCTTaGTTTTCCTTTTGCTGGTAC +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRLPQEA*FSFCWY
Trigger: GTACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAG...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGTTGATGGTAGCAGGATaGGATCAGCTTCAGGATGTG +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRLMVAG*DQLQDV
Trigger: CACATCCTGAAGCTGATCCCATCCTGCTACCATCAA...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATGCCTCTCCGAATGCCTaGATTCCTTGGGAGAAATCA +
Preference number: 2 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNASPNA*IPWEKS
Trigger: TGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGC...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGATGCTTCTGTGATACCTaGATACTTCAAGCTGACTAC +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRCFCDT*ILQADY
Trigger: GTAGTCAGCTTGAAGTATCCAGGTATCACAGAAGCA...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAGTCATCTGGGCCATCTaGGTCTTCTGTCCAGACCTT +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKVIWAI*VFCPDL
Trigger: AAGGTCTGGACAGAAGACCCAGATGGCCCAGATGAC...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGAAGTCCAAGTCATCTaGGCCATCTGGGTCTTCTGT +
Preference number: 2 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVEVQVI*AIWVFC
Trigger: ACAGAAGACCCAGATGGCCCAGATGACTTGGACTTC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACACTTCCCAACTGTCTaGACTCAATGGATAACAGTT +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRHFPTV*TQWITV
Trigger: AACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATTTACAAGAGCGGCCATaGTGGTTGAATGTCGCATCG +
Preference number: 2 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNLQERP*WLNVAS
Trigger: CGATGCGACATTCAACCACCATGGCCGCTCTTGTAA...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGTCATATTTCAGCTCTaGTCCAAATCGCTCCTGAAC +
Preference number: 2 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTVIFQL*SKSLLN
Trigger: GTTCAGGAGCGATTTGGACCAGAGCTGAAATATGAC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAACCTTTGATTCCAAGTaGATATTTGATGGTAGCAGG +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRTFDSK*IFDGSR
Trigger: CCTGCTACCATCAAATATTCACTTGGAATCAAAGGT...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCACCTTTGATTCCAAGTaGATATTTGATGGTAGCAGG +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSTFDSK*IFDGSR
Trigger: CCTGCTACCATCAAATATTCACTTGGAATCAAAGGT...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACTTAGAAAACAGTAGCTaGAGGGTCCTCGACATCTCC +
Preference number: 2 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHLENSS*RVLDIS
Trigger: GGAGATGTCGAGGACCCTTCAGCTACTGTTTTCTAA...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTTCTGTGTCACCTGAGTaGGTGTCTCCTGTTCATGAA +
Preference number: 2 (lower is better)
Translates to: TVCIENKHPPHSILGNMFSVSPE*VSPVHE
Trigger: TTCATGAACAGGAGACACTCACTCAGGTGACACAGA...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp TGGTTAAGTTCATCTGAACTGTATGAGTTGTCGATATATAAGTGCCGGTGCTCTGGTGGTACCAAGTTTTaGTTTGCTTTGACAAGGTGG +
Preference number: 2 (lower is better)
Translates to: WLSSSELYELSIYKCRCSGGTKF*FALTRW
Trigger: CCACCTTGTCAAAGCAAATCAAAACTTGGTACCACC...AGAGCACCGGCACTTATATATCGACAACTCATACAGTTCAGATGAACTTAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR TCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATGGCCATGTTAAATATTaGCCTCCTGGAGTCCACAAG +
Preference number: 2 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNGHVKY*PPGVHK
Trigger: CTTGTGGACTCCAGGAGGTCAATATTTAACATGGCC...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGCTTTCACTAACCGCATaGAAGCTTCTGTTAGGCAAC +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRLSLTA*KLLLGN
Trigger: GTTGCCTAACAGAAGCTTGCATGCGGTTAGTGAAAG...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCACACAAATGTGTTCTaGACACAATCAGGATACAGT +
Preference number: 2 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSHTNVF*TQSGYS
Trigger: ACTGTATCCTGATTGTGTGCAGAACACATTTGTGTG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp ACCCAAAGATATAATTTGAGTGATGACAGTTCAGAACACACCTTTGTATTCCCTATCCTGTGTCCTGCGTaGCTGCGTTTTTCTTGTTGG +
Preference number: 2 (lower is better)
Translates to: TQRYNLSDDSSEHTFVFPILCPA*LRFSCW
Trigger: CCAACAAGAAAAACGCAGGCACGCAGGACACAGGAT...AGGGAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGCTCTTGAAGACACAGTaGCAGCTTTGCCTTTGGTGT +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQLLKTQ*QLCLWC
Trigger: ACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAG...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTCATTGGCATCATTTTaGGCTTCGAGAAACCCATCG +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSSLASF*ASRNPS
Trigger: CGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGA...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCACCTTTGATTCCAAGTaGATATTTGATGGTAGCAGG +
Preference number: 2 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTTFDSK*IFDGSR
Trigger: CCTGCTACCATCAAATATTCACTTGGAATCAAAGGT...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGGTCCTATACACCTTTaGGTCTTTATGAGACATGGG +
Preference number: 2 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVGPIHL*VFMRHG
Trigger: CCCATGTCTCATAAAGACTCAAAGGTGTATAGGACC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGATATTTAAAAGCATCTTaGGAGAACGTGTTAGTGTGC +
Preference number: 2 (lower is better)
Translates to: PLSLYETWGTFCETFPQRYLKAS*ENVLVC
Trigger: GCACACTAACACGTTCTCTCAAGATGCTTTTAAATA...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTTGTGGAATGAATGGCTaGCCAGAGAGAAATAGCAAC +
Preference number: 2 (lower is better)
Translates to: TVCIENKHPPHSILGNMFCGMNG*PERNSN
Trigger: GTTGCTATTTCTCTCTGGTCAGCCATTCATTCCACA...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTAAATCAAGATGTTTCTaGTCCCAAGCCCCACATTTC +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSKSRCF*SQAPHF
Trigger: GAAATGTGGGGCTTGGGATCAGAAACATCTTGATTT...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCATTTGCTACAATTTCTTaGCGCTGTGTTTCAGTGTTC +
Preference number: 2 (lower is better)
Translates to: IRIQYASKTNILHTVSWAFATIS*RCVSVF
Trigger: GAACACTGAAACACAGCGGCAAGAAATTGTAGCAAA...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACTGTTCTTCTCTTTCATaGTCTGCAGCACAGCAGATG +
Preference number: 2 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHCSSLS*SAAQQM
Trigger: CATCTGCTGTGCTGCAGAGCATGAAAGAGAAGAACA...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACTTGTCGATATATAAGTaGCGGTGCTCTTTGGGACAC +
Preference number: 2 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHLSIYK*RCSLGH
Trigger: GTGTCCCAAAGAGCACCGGCACTTATATATCGACAA...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCAAGTGCATTGAGCTTTaGGAAAAACTTTTGGTGAGC +
Preference number: 2 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTKCIEL*EKLLVS
Trigger: GCTCACCAAAAGTTTTTCCCAAAGCTCAATGCACTT...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAGGTCCTATACACCTTTaGGTCTTTATGAGACATGGG +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKGPIHL*VFMRHG
Trigger: CCCATGTCTCATAAAGACTCAAAGGTGTATAGGACC...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGAAAAAGCATTTATGCTaGCACAATGGAATCTGCCCA +
Preference number: 2 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRKKHLC*HNGICP
Trigger: TGGGCAGATTCCATTGTGTCAGCATAAATGCTTTTT...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGAAATCAAGATGTTTCTaGTCCCAAGCCCCACATTTC +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQKSRCF*SQAPHF
Trigger: GAAATGTGGGGCTTGGGATCAGAAACATCTTGATTT...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR GCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCATTGGACTTCAATCTTaGCTTTTTAGCAGCACTGAT +
Preference number: 2 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTIGLQS*LFSSTD
Trigger: ATCAGTGCTGCTAAAAAGGCAAGATTGAAGTCCAAT...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTTGCTTCTGTGATACCTaGATACTTCAAGCTGACTAC +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCCFCDT*ILQADY
Trigger: GTAGTCAGCTTGAAGTATCCAGGTATCACAGAAGCA...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTAGTCTTTATGAGACATaGGGGACCTTTTGTGAAACT +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSSLYET*GTFCET
Trigger: AGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACT...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTTTTGCTTTGACAAGGTaGGAGAGTGCTTTCTTGATG +
Preference number: 2 (lower is better)
Translates to: TVCIENKHPPHSILGNMFFALTR*ESAFLM
Trigger: CATCAAGAAAGCACTCTCCCACCTTGTCAAAGCAAA...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGAGCTTTTTACCCGGTaGTACCAAGTTTTGATTTGC +
Preference number: 2 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCELFTR*YQVLIC
Trigger: GCAAATCAAAACTTGGTACCACCGGGTAAAAAGCTC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR GCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCACATCACCTATGTTTaGATATACAGAATTTGCCAC +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSHITYV*IYRICH
Trigger: GTGGCAAATTCTGTATATGCAAACATAGGTGATGTG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGAAGTGCATTGAGCTTTaGGAAAAACTTTTGGTGAGC +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQKCIEL*EKLLVS
Trigger: GCTCACCAAAAGTTTTTCCCAAAGCTCAATGCACTT...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGAGTCTTTATGAGACATaGGGGACCTTTTGTGAAACT +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQSLYET*GTFCET
Trigger: AGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACT...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAACTGTCTGGACTCAATaGATAACAGTTGCTTGTACT +
Preference number: 2 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVTVWTQ*ITVACT
Trigger: AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGT...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTATATGTGGGGATTCTTaGAAGAAAGCATCCAATAAC +
Preference number: 2 (lower is better)
Translates to: HTIRIQYASKTNILHTVSICGDS*KKASNN
Trigger: GTTATTGGATGCTTTCTTCCAAGAATCCCCACATAT...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGAGCATAAACCAAAATTaGATATGTGGGGATTCTTGG +
Preference number: 2 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQSINQN*ICGDSW
Trigger: CCAAGAATCCCCACATATTCAATTTTGGTTTATGCT...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR TCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAAGCATAAACCAAAATTaGATATGTGGGGATTCTTGG +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKSINQN*ICGDSW
Trigger: CCAAGAATCCCCACATATTCAATTTTGGTTTATGCT...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAAGAACAGAAACTTACTaGAGTAGTCACAGGAAATTA +
Preference number: 2 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKRTETY*SSHRKL
Trigger: TAATTTCCTGTGACTACTCCAGTAAGTTTCTGTTCT...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CCA 72 bp GGTGGGAGGTCGGTCGCTGGGCGAGCAGCCAGGCCATaGGAGGACTTTGGAGGCAAGCCCACTGAGGGGGCT +
Preference number: 3 (lower is better)
Translates to: GGRSVAGRAARP*EDFGGKPTEGA
Trigger: AGCCCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp GGCAGAGGGGCGATTCCACAGGAGTGGCACAGGCACTaGTACTGCTGCCCGGTCCACAGCCTGTGTCCACTG +
Preference number: 3 (lower is better)
Translates to: GRGAIPQEWHRH*YCCPVHSLCPL
Trigger: CAGTGGACACAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTGCCACTCCTGTGGAATCGCCCCTCTGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp CTTGGAAGGCACAACTTTGGGTGGGAGGTCGGTCGCTaGGCGAGCAGCCAGGCCATGGGAGGACTTTGGAGG +
Preference number: 3 (lower is better)
Translates to: LGRHNFGWEVGR*ASSQAMGGLWR
Trigger: CCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp GACGGCAGGGTCCAGTCCCTTCTCACACTTGCCCTCTaGACTGGTGGGCACAGCATCAATGAGGGACACAGG +
Preference number: 3 (lower is better)
Translates to: DGRVQSLLTLAL*TGGHSINEGHR
Trigger: CCTGTGTCCCTCATTGATGCTGTGCCCACCAGTGCAGAGGGCAAGTGTGAGAAGGGACTGGACCCTGCCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp GCGATTCCACAGGAGTGGCACAGGCACTGCTACTGCTaGCCGGTCCACAGCCTGTGTCCACTGAAGAGCCTT +
Preference number: 3 (lower is better)
Translates to: AIPQEWHRHCYC*PVHSLCPLKSL
Trigger: AAGGCTCTTCAGTGGACACAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTGCCACTCCTGTGGAATCGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp CCTGAGGGAGGTGGCCAGCCCGAAGACTTGGTCCTGTaGCAGCTGTGTGACCTCATGCCACTGAACTGCTCT +
Preference number: 3 (lower is better)
Translates to: PEGGGQPEDLVL*QLCDLMPLNCS
Trigger: AGAGCAGTTCAGTGGCATGAGGTCACACAGCTGCCACAGGACCAAGTCTTCGGGCTGGCCACCTCCCTCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GGGAGGACTTTGGAGGCAAGCCCACTGAGGGGGCTTTaGAGGTGGGGAACTCTGTCTGCTCTTCTGCCAGAG +
Preference number: 3 (lower is better)
Translates to: GRTLEASPLRGL*RWGTLSALLPE
Trigger: CTCTGGCAGAAGAGCAGACAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp GGTGGGAGGTCGGTCGCTGGGCGAGCAGCCAGGCCATGGGAGGACTTTGGAGGCTCAAAACGAAAGGATTaGGTCTGTCCGTTTTCCAAA +
Preference number: 3 (lower is better)
Translates to: GGRSVAGRAARPWEDFGGSKRKD*VCPFSK
Trigger: TTTGGAAAACGGACAGACCAAATCCTTTCGTTTTGA...GCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GCTACACAGGCCATGTCTGTGAGGAAGCGGTCCCCTTaGCCAAGTACTGAAGCATCATCAGCCCCTCCTTCC +
Preference number: 3 (lower is better)
Translates to: ATQAMSVRKRSP*PSTEASSAPPS
Trigger: GGAAGGAGGGGCTGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTGTGTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp CTTTCCCAGAAGCATCTGGAATCATGTGCTTCCCCATaGACGGGCAGAGGGGCGATTCCACAGGAGTGGCAC +
Preference number: 3 (lower is better)
Translates to: LSQKHLESCASP*TGRGAIPQEWH
Trigger: GTGCCACTCCTGTGGAATCGCCCCTCTGCCCGTCCATGGGGAAGCACATGATTCCAGATGCTTCTGGGAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp AGGCACTGTCATGCGTGGACACATCCCTTCTGTCTGTaGGTGCAGTTCCTCGAAGGTGGCTCCATGGTTGGG +
Preference number: 3 (lower is better)
Translates to: RHCHAWTHPFCL*VQFLEGGSMVG
Trigger: CCCAACCATGGAGCCACCTTCGAGGAACTGCACCCACAGACAGAAGGGATGTGTCCACGCATGACAGTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp GTAGTCACAAAGGCGGGCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATGGGCCAGCCCGAAGACTaGGTCCTGTGGCAGCTGTGT +
Preference number: 3 (lower is better)
Translates to: VVTKAGHIVFSLRKLSGMGQPED*VLWQLC
Trigger: ACACAGCTGCCACAGGACCAAGTCTTCGGGCTGGCC...CATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTGTGACTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp AACAGGAAGCCCTTCATGGAGCTGAGGACTAAGAGTTaGAGGCTGAGCTGTGCTTCCCAGGTGCTGGGGTGC +
Preference number: 3 (lower is better)
Translates to: NRKPFMELRTKS*RLSCASQVLGC
Trigger: GCACCCCAGCACCTGGGAAGCACAGCTCAGCCTTCAACTCTTAGTCCTCAGCTCCATGAAGGGCTTCCTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CCA 72 bp TCATCACTTGACCCGGACAGGTCAAGGATGGCTGGTTaGTTCATTTCACCCACCACGAGGTCCTCCTCGCAG +
Preference number: 3 (lower is better)
Translates to: SSLDPDRSRMAG*FISPTTRSSSQ
Trigger: CTGCGAGGAGGACCTCGTGGTGGGTGAAATGAACCAACCAGCCATCCTTGACCTGTCCGGGTCAAGTGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp GCTGGGCGAGCAGCCAGGCCATGGGAGGACTTTGGAGGCAAGCCCACTGAGGGGAGTAGTCATCTCTACTaGATTTTCTGGAACACTCTA +
Preference number: 3 (lower is better)
Translates to: AGRAARPWEDFGGKPTEGSSHLY*IFWNTL
Trigger: TAGAGTGTTCCAGAAAATCAAGTAGAGATGACTACT...CCCCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCGCCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp AAAGTGCCAAACAGGGGGTCGGCATTAATGGCTGTGTaGAGAGCAGGCACTGTCATGCGTGGACACATCCCT +
Preference number: 3 (lower is better)
Translates to: KVPNRGSALMAV*RAGTVMRGHIP
Trigger: AGGGATGTGTCCACGCATGACAGTGCCTGCTCTGCACACAGCCATTAATGCCGACCCCCTGTTTGGCACTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp AGCCAGACTGCTGAAGTCCAAGTCATCTGGGCCATCTaGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCT +
Preference number: 3 (lower is better)
Translates to: SQTAEVQVIWAI*VFCPDLQSCPS
Trigger: AGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAGATGGCCCAGATGACTTGGACTTCAGCAGTCTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 72 bp TCTGCTCTTCTGCCAGAGGGTGATAGCCTTCATGAGTaGCCAAGAACATGCGGGAGAGGCTTTCCGACTGCT +
Preference number: 3 (lower is better)
Translates to: SALLPEGDSLHE*PRTCGRGFPTA
Trigger: AGCAGTCGGAAAGCCTCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATCACCCTCTGGCAGAAGAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GCTCCATTTCCATGTGGTCTGAGTGAAGGATCTGCTTaGAAGGCACAACTTTGGGTGGGAGGTCGGTCGCTG +
Preference number: 3 (lower is better)
Translates to: APFPCGLSEGSA*KAQLWVGGRSL
Trigger: CAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCAAGCAGATCCTTCACTCAGACCACATGGAAATGGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGTCCTCCTTCCTTGCCTaGGTTGCCCTCACAAGGCAG +
Preference number: 3 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWSSFLA*VALTRQ
Trigger: CTGCCTTGTGAGGGCAACCAAGGCAAGGAAGGAGGA...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TCTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGCACGTCCATCTCGGTTaGTCATCATCTCCCATCCAT +
Preference number: 3 (lower is better)
Translates to: SRASSVETTAGSSPFSHLHVHLG*SSSPIH
Trigger: ATGGATGGGAGATGATGACAAACCGAGATGGACGTG...CAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp GGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTaGGAGGATTCTGCTGCTATGTCTGAGAGCCCTCTG +
Preference number: 3 (lower is better)
Translates to: GSLLEGLQTYGS*EDSAAMSESPL
Trigger: CAGAGGGCTCTCAGACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 72 bp CTAAGTCTTTGGCTGAGGCTACACAGGCCATGTCTGTaGGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCAT +
Preference number: 3 (lower is better)
Translates to: LSLWLRLHRPCL*GSGPLGQVLKH
Trigger: ATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTGTGTAGCCTCAGCCAAAGACTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp TCCATGGTTGGGATGGCCAGGGGCTCTCTCCTCTGGTaGAATATATCTCCCTCCTTTCCCAGAAGCATCTGG +
Preference number: 3 (lower is better)
Translates to: SMVGMARGSLLW*NISPSFPRSIW
Trigger: CCAGATGCTTCTGGGAAAGGAGGGAGATATATTTCACCAGAGGAGAGAGCCCCTGGCCATCCCAACCATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp AGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGCTTCTaGAGTCCAACAACCAGGGATGAGTTACCTGGTTCC +
Preference number: 3 (lower is better)
Translates to: RAVPLDSSSPCF*SPTTRDELPGS
Trigger: GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTACCCTTGGTTCTCTCTaGGAAGGTCTCCAAACCTAC +
Preference number: 3 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLTLGSL*EGLQTY
Trigger: GTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGT...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAAGCTGACTACACCCTaGGTTCTCTCTTGGAAGGTC +
Preference number: 3 (lower is better)
Translates to: ALVALTRQSSSLASFWASKLTTP*VLSWKV
Trigger: GACCTTCCAAGAGAGAACCAAGGGTGTAGTCAGCTT...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp GTAGTCACAAAGGCGGGCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATGAAGTGCCGGTGCTCTTaGGGACACAAGGTGCTGTCT +
Preference number: 3 (lower is better)
Translates to: VVTKAGHIVFSLRKLSGMKCRCS*GHKVLS
Trigger: AGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTT...CATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTGTGACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp ACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTaGTTCTGCAGTCCAACAACCAGGGATGAGTTACCT +
Preference number: 3 (lower is better)
Translates to: TFRAVPLDSSSP*FCSPTTRDELP
Trigger: AGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 72 bp GCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTaGGCTTCGAGAAACCCATCGGGCATTCCATATGTG +
Preference number: 3 (lower is better)
Translates to: ALTRQSSSLASF*ASRNPSGIPYV
Trigger: CACATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 72 bp CGCGGCCAGCCGCAAGGCAATGTCATATTTCAGCTCTaGTCCAAATCGCTCCTGAACGACATCGTTACAACT +
Preference number: 3 (lower is better)
Translates to: RGQPQGNVIFQL*SKSLLNDIVTT
Trigger: AGTTGTAACGATGTCGTTCAGGAGCGATTTGGACCAGAGCTGAAATATGACATTGCCTTGCGGCTGGCCGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp ATCCTCTTTCCCTTCAGCCTCTCTGTTACCCAAGCCTaGACCTCTGGGAAAGACTTTCATGGCTGGTGCTTC +
Preference number: 3 (lower is better)
Translates to: ILFPFSLSVTQA*TSGKDFHGWCF
Trigger: GAAGCACCAGCCATGAAAGTCTTTCCCAGAGGTCCAGGCTTGGGTAACAGAGAGGCTGAAGGGAAAGAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCGAATGCCTGGATTCCTaGGGAGAAATCATTAGGGTC +
Preference number: 3 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGECLDS*GEIIRV
Trigger: GACCCTAATGATTTCTCCCAAGGAATCCAGGCATTC...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAAAGCTGACTACACCCTaGGTTCTCTCTTGGAAGGTC +
Preference number: 3 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAKLTTP*VLSWKV
Trigger: GACCTTCCAAGAGAGAACCAAGGGTGTAGTCAGCTT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TCTAGGGCTTCCAGTGTGGAAACGACGGCAGGGTCCAGTCCCTTCTCACACTTGGGGTCCTATACACCTTaGAGTCTTTATGAGACATGG +
Preference number: 3 (lower is better)
Translates to: SRASSVETTAGSSPFSHLGSYTP*SLYETW
Trigger: CCATGTCTCATAAAGACTCAAAGGTGTATAGGACCC...CAAGTGTGAGAAGGGACTGGACCCTGCCGTCGTTTCCACACTGGAAGCCCTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGTGCCAGCTTTGCCTTaGGTGTCCTCCTCTATCTCT +
Preference number: 3 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSVPALP*VSSSIS
Trigger: AGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCAC...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGAATGCCTGGATTCCTaGGGAGAAATCATTAGGGTC +
Preference number: 3 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWECLDS*GEIIRV
Trigger: GACCCTAATGATTTCTCCCAAGGAATCCAGGCATTC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCAAGCTGACTACACCCTaGGTTCTCTCTTGGAAGGTC +
Preference number: 3 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSKLTTP*VLSWKV
Trigger: GACCTTCCAAGAGAGAACCAAGGGTGTAGTCAGCTT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCGGGTCCTATACACCTTaGAGTCTTTATGAGACATGG +
Preference number: 3 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGGSYTP*SLYETW
Trigger: CCATGTCTCATAAAGACTCAAAGGTGTATAGGACCC...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp AAGAGCCACCAGATTGGTTTTGGTGTTTATGACATGGCTTATGCCATACCGGGGGAGCGGCCATGGTGGTaGAATGTCGCATCGATAGTC +
Preference number: 3 (lower is better)
Translates to: KSHQIGFGVYDMAYAIPGERPWW*NVASIV
Trigger: GACTATCGATGCGACATTCAACCACCATGGCCGCTC...CCCCGGTATGGCATAAGCCATGTCATAAACACCAAAACCAATCTGGTGGCTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGCTGTCTTTCCACGTTTaGTTGCTAGCCATGCTCCTG +
Preference number: 3 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRLSFHV*LLAMLL
Trigger: CAGGAGCATGGCTAGCAACAAAACGTGGAAAGACAG...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAGGGTTATCTAAGTCTTaGGCTGAGGCTACACAGGCC +
Preference number: 3 (lower is better)
Translates to: RAAMVVECRIDSPILGSPGLSKS*AEATQA
Trigger: GGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACCC...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp GAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTaGACTGACCTCCTGTGCTTCTGTGATACCTGGATA +
Preference number: 3 (lower is better)
Translates to: ELLPQREFCSSF*TDLLCFCDTWI
Trigger: TATCCAGGTATCACAGAAGCACAGGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 72 bp TTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATaGGTTACCTGGTTCCGACATGGCTTGGGTTATCTG +
Preference number: 3 (lower is better)
Translates to: FFPLLLQSNNQG*VTWFRHGLGYL
Trigger: CAGATAACCCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 72 bp AAAAATGGCCCTCACTCTGCAGGGATGACATTCGCTTaGCCAAATGGTAGTCACAAAGGCGGGCCACATTGT +
Preference number: 3 (lower is better)
Translates to: KNGPHSAGMTFA*PNGSHKGGPHC
Trigger: ACAATGTGGCCCGCCTTTGTGACTACCATTTGGCCAAGCGAATGTCATCCCTGCAGAGTGAGGGCCATTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp AGCTACACTGTGGTTTCCTTAATCTTGGGCAGTCGATaGCATCCATCTCTCAAAGTGCCAAACAGGGGGTCG +
Preference number: 3 (lower is better)
Translates to: SYTVVSLILGSR*HPSLKVPNRGS
Trigger: CGACCCCCTGTTTGGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGTGTAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTGGGCTTGGCACCTTaGATTCCAAGTGAATATTTG +
Preference number: 3 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGLGLAP*IPSEYL
Trigger: CAAATATTCACTTGGAATCAAAGGTGCCAAGCCCAA...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGAAATCATTAGGGTCTaGATTTGGGCTTGGCACCTT +
Preference number: 3 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWEIIRV*IWAWHL
Trigger: AAGGTGCCAAGCCCAAATCAAGACCCTAATGATTTC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAGGGTCCTATACACCTTaGAGTCTTTATGAGACATGG +
Preference number: 3 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAGSYTP*SLYETW
Trigger: CCATGTCTCATAAAGACTCAAAGGTGTATAGGACCC...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTTAGGGCATTTATTCTaGCAATCCGGGCATCAAAAG +
Preference number: 3 (lower is better)
Translates to: ALVALTRQSSSLASFWASLGHLF*QSGHQK
Trigger: CTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACCTTCCTTGCCTTGGTaGCCCTCACAAGGCAGAGCA +
Preference number: 3 (lower is better)
Translates to: PLSLYETWGTFCETFPQRPSLPW*PSQGRA
Trigger: TGCTCTGCCTTGTGAGGGCAACCAAGGCAAGGAAGG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGATCCTCCTTCCTTGCCTaGGTTGCCCTCACAAGGCAG +
Preference number: 3 (lower is better)
Translates to: PLSLYETWGTFCETFPQRSSFLA*VALTRQ
Trigger: CTGCCTTGTGAGGGCAACCAAGGCAAGGAAGGAGGA...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CAGGCCATGTCTGTGAGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCACTTTGCTACAATTTCTaGCCGCTGTGTTTCAGTGTT +
Preference number: 3 (lower is better)
Translates to: QAMSVRKRSPWPSTEASSLCYNF*PLCFSV
Trigger: AACACTGAAACACAGCGGCAAGAAATTGTAGCAAAG...TGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAGGTGTGGATTGTCTCTaGAAGACACAGTGCCAGCTT +
Preference number: 3 (lower is better)
Translates to: RAAMVVECRIDSPILGSPGVDCL*KTQCQL
Trigger: AAGCTGGCACTGTGTCTTCAAGAGACAATCCACACC...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp TTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTaGAGTCCAAGTCATCTGGGCCATCTGGGTCTTCTG +
Preference number: 3 (lower is better)
Translates to: LFLQSGHQKPDC*SPSHLGHLGLL
Trigger: CAGAAGACCCAGATGGCCCAGATGACTTGGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR TCA 72 bp GTACTGAGAAAGTGTAAGGTCATATGTTTCAGGGCGTaGCTCCTCCTTCCTTGCCTTGGTTGCCCTCACAAG +
Preference number: 3 (lower is better)
Translates to: VLRKCKVICFRA*LLLPCLGCPHK
Trigger: CTTGTGAGGGCAACCAAGGCAAGGAAGGAGGAGTCACGCCCTGAAACATATGACCTTACACTTTCTCAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 72 bp CCAACCAGAAGAGTTACTTCTGAGCGCTTCTCTGCCTaGACTAATGTTGCCTTGAATACACGGCCCCCATAT +
Preference number: 3 (lower is better)
Translates to: PTRRVTSERFSA*TNVALNTRPPY
Trigger: ATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCAGGCAGAGAAGCGCTCAGAAGTAACTCTTCTGGTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GGATACTTCAAGCTGACTACACCCTTGGTTCTCTCTTaGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATT +
Preference number: 3 (lower is better)
Translates to: GYFKLTTPLVLS*KVSKPTGPERI
Trigger: AATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTGTAGTCAGCTTGAAGTATCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 72 bp GTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATaGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGA +
Preference number: 3 (lower is better)
Translates to: VQQPGMSYLVPT*LGLSVVDRDKR
Trigger: TCTCTTGTCTCTATCGACCACAGATAACCCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CCA 72 bp GCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATaGTCACAAGAGGGAGAGTCAGTATCTTCGGGGTTA +
Preference number: 3 (lower is better)
Translates to: ATLSSASESLVA*SQEGESVSSGL
Trigger: TAACCCCGAAGATACTGACTCTCCCTCTTGTGACCATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCTTGGGCTTGGCACCTTaGATTCCAAGTGAATATTTG +
Preference number: 3 (lower is better)
Translates to: LVSFFPRGSSARLSELTSLGLAP*IPSEYL
Trigger: CAAATATTCACTTGGAATCAAAGGTGCCAAGCCCAA...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCGGACAGTTCTTCCCCTaGCTTCTGCAGTCCAACAAC +
Preference number: 3 (lower is better)
Translates to: FRAFILAIRASKARLLKSGQFFP*LLQSNN
Trigger: GTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCC...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTAGGGCATTTATTCTaGCAATCCGGGCATCAAAAG +
Preference number: 3 (lower is better)
Translates to: QGRAAHWHHFGLRETHRALGHLF*QSGHQK
Trigger: CTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAA...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCAGGTCAATGGGATCTTaGGGAACAAAACTGATTCGG +
Preference number: 3 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSRSMGS*GTKLIR
Trigger: CCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp CAGGCCATGTCTGTGAGGAAGCGGTCCCCTTGGCCAAGTACTGAAGCATCATCAGTGCCTGCGTTTTTCTaGTTGGCCATGTTAAATATT +
Preference number: 3 (lower is better)
Translates to: QAMSVRKRSPWPSTEASSVPAFF*LAMLNI
Trigger: AATATTTAACATGGCCAACAAGAAAAACGCAGGCAC...TGATGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCTCACAGACATGGCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp TGTTCTTTGTCCTCATGGAAGGACGTTGCCTGGCTCTaGGTGTCCTCTTCATCAGAACTGTCTCTAAAGCCA +
Preference number: 3 (lower is better)
Translates to: CSLSSWKDVAWL*VSSSSELSLKP
Trigger: TGGCTTTAGAGACAGTTCTGATGAAGAGGACACTCAGAGCCAGGCAACGTCCTTCCATGAGGACAAAGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp TTGGCAGCTGTCAAACCGAGGGTCATCAAATGGGATTaGCTGTGTCATGTGATTGATGAAGTAGTCACGTCC +
Preference number: 3 (lower is better)
Translates to: LAAVKPRVIKWD*LCHVIDEVVTS
Trigger: GGACGTGACTACTTCATCAATCACATGACACAGGCAATCCCATTTGATGACCCTCGGTTTGACAGCTGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp GCAGCTCCTGACCAGGTCGATGACTCTCTCTCTTGGTaGAGCGCTGACTGCTTCATCATTAATCATTACAAT +
Preference number: 3 (lower is better)
Translates to: AAPDQVDDSLSW*SADCFIINHYN
Trigger: ATTGTAATGATTAATGATGAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTCATCGACCTGGTCAGGAGCTGC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GCTTCTTGTTCGCCTTCACCAATGAAGGTGGTCATCTaGGGCATACAGTTCCAATCAGGACCAAGGAGATTA +
Preference number: 3 (lower is better)
Translates to: ASCSPSPMKVVI*GIQFQSGPRRL
Trigger: TAATCTCCTTGGTCCTGATTGGAACTGTATGCCCCAGATGACCACCTTCATTGGTGAAGGCGAACAAGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAGGACAGTTCTTCCCCTaGCTTCTGCAGTCCAACAAC +
Preference number: 3 (lower is better)
Translates to: PLSLYETWGTFCETFPQRGQFFP*LLQSNN
Trigger: GTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCC...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTCCTCCTTCCTTGCCTaGGTTGCCCTCACAAGGCAG +
Preference number: 3 (lower is better)
Translates to: HTIRIQYASKTNILHTVSSSFLA*VALTRQ
Trigger: CTGCCTTGTGAGGGCAACCAAGGCAAGGAAGGAGGA...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCGGCTTTTCTCGGCCATaGCCATTTTCCTACAGGCAC +
Preference number: 3 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSGFSRP*PFSYRH
Trigger: GTGCCTGTAGGAAAATGGCAATGGCCGAGAAAAGCC...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCCACTTCATCAATCTTaGCTACAATTTCTTGCCGCT +
Preference number: 3 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSPLHQS*LQFLAA
Trigger: AGCGGCAAGAAATTGTAGCAAAGATTGATGAAGTGG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp GTAGTCACAAAGGCGGGCCACATTGTCTTCAGCCTCAGAAAGCTTAGTGGCATGAGCTTCATGGTTGAGTaGGAAGGAAATAATGCCTTC +
Preference number: 3 (lower is better)
Translates to: VVTKAGHIVFSLRKLSGMSFMVE*EGNNAF
Trigger: GAAGGCATTATTTCCTTCCAACTCAACCATGAAGCT...CATGCCACTAAGCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTGTGACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAATTTTCTGCGTCTGTTaGGTGGTGACAGTAGCAATG +
Preference number: 3 (lower is better)
Translates to: RAAMVVECRIDSPILGSPIFCVC*VVTVAM
Trigger: CATTGCTACTGTCACCACCAAACAGACGCAGAAAAT...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGTTGGGCTTGGCACCTTaGATTCCAAGTGAATATTTG +
Preference number: 3 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMLGLAP*IPSEYL
Trigger: CAAATATTCACTTGGAATCAAAGGTGCCAAGCCCAA...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACTTTGCTACAATTTCTaGCCGCTGTGTTTCAGTGTT +
Preference number: 3 (lower is better)
Translates to: RAAMVVECRIDSPILGSPLCYNF*PLCFSV
Trigger: AACACTGAAACACAGCGGCAAGAAATTGTAGCAAAG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 72 bp TGGGGCATACAGTTCCAATCAGGACCAAGGAGATTATaGTTGCCTTTATTTTCTGATCCTGTGTCCTGCGTG +
Preference number: 3 (lower is better)
Translates to: WGIQFQSGPRRL*LPLFSDPVSCV
Trigger: CACGCAGGACACAGGATCAGAAAATAAAGGCAAGCATAATCTCCTTGGTCCTGATTGGAACTGTATGCCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTACCCTTGGTTCTCTCTaGGAAGGTCTCCAAACCTAC +
Preference number: 3 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILTLGSL*EGLQTY
Trigger: GTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGT...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGGGTCCTATACACCTTaGAGTCTTTATGAGACATGG +
Preference number: 3 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKGSYTP*SLYETW
Trigger: CCATGTCTCATAAAGACTCAAAGGTGTATAGGACCC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGGACAGTTCTTCCCCTaGCTTCTGCAGTCCAACAAC +
Preference number: 3 (lower is better)
Translates to: HTIRIQYASKTNILHTVSGQFFP*LLQSNN
Trigger: GTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGGCTTTTCTCGGCCATaGCCATTTTCCTACAGGCAC +
Preference number: 3 (lower is better)
Translates to: HTIRIQYASKTNILHTVSGFSRP*PFSYRH
Trigger: GTGCCTGTAGGAAAATGGCAATGGCCGAGAAAAGCC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR TCA 72 bp AACCGCATGCAAGCTTCTGTTAGGCAACAGAGCACTTaGAAACTGGAACTCATAGCTAGGAGCATCTCTTCT +
Preference number: 3 (lower is better)
Translates to: NRMQASVRQQST*KLELIARSISS
Trigger: AGAAGAGATGCTCCTAGCTATGAGTTCCAGTTTTCAAGTGCTCTGTTGCCTAACAGAAGCTTGCATGCGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 72 bp GCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATaGAAGCTTCTGTTAGGCAACAGAGCACTTGAAAAC +
Preference number: 3 (lower is better)
Translates to: AVFQCSRLSLTA*KLLLGNRALEN
Trigger: GTTTTCAAGTGCTCTGTTGCCTAACAGAAGCTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 72 bp TCCAATATTAGGATCCCCAGTGGTCTTGCCAGTGGCTaGCTCAGCAGCTTTCAGGAGACAAATATAGTTTAT +
Preference number: 3 (lower is better)
Translates to: SNIRIPSGLASG*LSSFQETNIVY
Trigger: ATAAACTATATTTGTCTCCTGAAAGCTGCTGAGGCAGCCACTGGCAAGACCACTGGGGATCCTAATATTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 72 bp TCTGAACTGTATGAGTTGTCGATATATAAGTGCCGGTaGTCTTTGGGACACAAGGTGCTGTCTGTCATCTCA +
Preference number: 3 (lower is better)
Translates to: SELYELSIYKCR*SLGHKVLSVIS
Trigger: TGAGATGACAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTTATATATCGACAACTCATACAGTTCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GATGATTTGGCAGCTGTCAAACCGAGGGTCATCAAATaGGATTGCCTGTGTCATGTGATTGATGAAGTAGTC +
Preference number: 3 (lower is better)
Translates to: DDLAAVKPRVIK*DCLCHVIDEVV
Trigger: GACTACTTCATCAATCACATGACACAGGCAATCCCATTTGATGACCCTCGGTTTGACAGCTGCCAAATCATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp TGTATGAGTTGTCGATATATAAGTGCCGGTGCTCTTTaGGACACAAGGTGCTGTCTGTCATCTCAACTGTCT +
Preference number: 3 (lower is better)
Translates to: CMSCRYISAGAL*DTRCCLSSQLS
Trigger: AGACAGTTGAGATGACAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTTATATATCGACAACTCATACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGTTGGGCTTGGCACCTTaGATTCCAAGTGAATATTTG +
Preference number: 3 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKLGLAP*IPSEYL
Trigger: CAAATATTCACTTGGAATCAAAGGTGCCAAGCCCAA...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGAATGCCTGGATTCCTaGGGAGAAATCATTAGGGTC +
Preference number: 3 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTECLDS*GEIIRV
Trigger: GACCCTAATGATTTCTCCCAAGGAATCCAGGCATTC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTGGACAGTTCTTCCCCTaGCTTCTGCAGTCCAACAAC +
Preference number: 3 (lower is better)
Translates to: TVCIENKHPPHSILGNMFGQFFP*LLQSNN
Trigger: GTTGTTGGACTGCAGAAGCAAGGGGAAGAACTGTCC...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACGGCTTTTCTCGGCCATaGCCATTTTCCTACAGGCAC +
Preference number: 3 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHGFSRP*PFSYRH
Trigger: GTGCCTGTAGGAAAATGGCAATGGCCGAGAAAAGCC...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCTCTCCAAGTATCCATTaGGAAGGAAAGGGGATAGGA +
Preference number: 3 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSSPSIH*EGKGIG
Trigger: TCCTATCCCCTTTCCTTCCAAATGGATACTTGGAGA...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCGCACTTTGACTGGATaGGACTTCAATCTTGCCTTT +
Preference number: 3 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSRTLTG*DFNLAF
Trigger: AAAGGCAAGATTGAAGTCCAATCCAGTCAAAGTGCG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp ATCAGGACCAAGGAGATTATGCTTGCCTTTATTTTCTaGTCCTGTGTCCTGCGTGCCTGCGTTTTTCTTGTT +
Preference number: 3 (lower is better)
Translates to: IRTKEIMLAFIF*SCVLRACVFLV
Trigger: AACAAGAAAAACGCAGGCACGCAGGACACAGGATCAGAAAATAAAGGCAAGCATAATCTCCTTGGTCCTGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp GAGAAGTGTTCAATGCCTTTGATAGACAACTTCTCTTaGAGGGTTAAGATGACATCCTTGATGGAGGTGCTG +
Preference number: 3 (lower is better)
Translates to: EKCSMPLIDNFS*RVKMTSLMEVL
Trigger: CAGCACCTCCATCAAGGATGTCATCTTAACCCTGCAAGAGAAGTTGTCTATCAAAGGCATTGAACACTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp CTCAGGGGCCTCAAAGTTCTTCACATCACCTATGTTTaGATATACAGAATTTGCCACAAACTGGATGCTGTC +
Preference number: 3 (lower is better)
Translates to: LRGLKVLHITYV*IYRICHKLDAV
Trigger: GACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAAACATAGGTGATGTGAAGAACTTTGAGGCCCCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp CCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTaGACTCAATGGATAACAGTTGCTTGTACTGAGAAA +
Preference number: 3 (lower is better)
Translates to: PLPFSYRHFPTV*TQWITVACTEK
Trigger: TTTCTCAGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTACCCTTGGTTCTCTCTaGGAAGGTCTCCAAACCTAC +
Preference number: 3 (lower is better)
Translates to: TVCIENKHPPHSILGNMFTLGSL*EGLQTY
Trigger: GTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGT...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACAAGCTGACTACACCCTaGGTTCTCTCTTGGAAGGTC +
Preference number: 3 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHKLTTP*VLSWKV
Trigger: GACCTTCCAAGAGAGAACCAAGGGTGTAGTCAGCTT...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGCATTCCATATGTGTTaGCCTTTAGGGCATTTATTC +
Preference number: 3 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKAFHMC*PLGHLF
Trigger: GAATAAATGCCCTAAAGGCAAACACATATGGAATGC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACCACTTCATCAATCTTaGCTACAATTTCTTGCCGCT +
Preference number: 3 (lower is better)
Translates to: PLSLYETWGTFCETFPQRPLHQS*LQFLAA
Trigger: AGCGGCAAGAAATTGTAGCAAAGATTGATGAAGTGG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACGTGGTTTCCTTAATCTaGGGCAGTCGATGGCATCCA +
Preference number: 3 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHVVSLI*GSRWHP
Trigger: TGGATGCCATCGACTGCCCAAGATTAAGGAAACCAC...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp CTTCAATCTTGCCTTTTTAGCAGCACTGATAAATGCTaGTTTGGGAGATGGATAGGGCTGAATGACAGTGAG +
Preference number: 3 (lower is better)
Translates to: LQSCLFSSTDKC*FGRWIGLNDSE
Trigger: CTCACTGTCATTCAGCCCTATCCATCTCCCAAATCAGCATTTATCAGTGCTGCTAAAAAGGCAAGATTGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR TCA 72 bp TTCTTAACAGGTCAATGGGATCTTTGGGAACAAAACTaGTTCGGAAAAGACACCTCATCTTATGGGAGCTGG +
Preference number: 3 (lower is better)
Translates to: FLTGQWDLWEQN*FGKDTSSYGSW
Trigger: CCAGCTCCCATAAGATGAGGTGTCTTTTCCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCTGTTAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GAAATAGCAACTGTAGACCTTGCTAGGTCTCCTGCATaGCAGGCTACAAAATGGGAAATATTGATTCTTGCT +
Preference number: 3 (lower is better)
Translates to: EIATVDLARSPA*QATKWEILILA
Trigger: AGCAAGAATCAATATTTCCCATTTTGTAGCCTGCCATGCAGGAGACCTAGCAAGGTCTACAGTTGCTATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTGAATGCCTGGATTCCTaGGGAGAAATCATTAGGGTC +
Preference number: 3 (lower is better)
Translates to: TVCIENKHPPHSILGNMFECLDS*GEIIRV
Trigger: GACCCTAATGATTTCTCCCAAGGAATCCAGGCATTC...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCACTGGGTCTGCACTTTTaGTGCTCATTAAATCTGCTT +
Preference number: 3 (lower is better)
Translates to: IRIQYASKTNILHTVSWALGLHF*CSLNLL
Trigger: AAGCAGATTTAATGAGCACAAAAAGTGCAGACCCAG...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTTCCGACACTTGGCCATaGATTATGACCTCTTCGGAA +
Preference number: 3 (lower is better)
Translates to: TVCIENKHPPHSILGNMFSDTWP*IMTSSE
Trigger: TTCCGAAGAGGTCATAATCAATGGCCAAGTGTCGGA...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp TGGTTAAGTTCATCTGAACTGTATGAGTTGTCGATATATAAGTGCCGGTGCTCTTGTGATTTGGGCTTCTaGTTCGCCTTCACCAATGAA +
Preference number: 3 (lower is better)
Translates to: WLSSSELYELSIYKCRCSCDLGF*FAFTNE
Trigger: TTCATTGGTGAAGGCGAACAAGAAGCCCAAATCACA...AGAGCACCGGCACTTATATATCGACAACTCATACAGTTCAGATGAACTTAACCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp AGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATaGACTACACACAAATGTGTTCTGCACACAATCAGG +
Preference number: 3 (lower is better)
Translates to: RPSFPCMLLFRV*TTHKCVLHTIR
Trigger: CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR GCA 72 bp GGACACAAGGTGCTGTCTGTCATCTCAACTGTCTTCTaGTTAGAATCTATATATGTGATTTGGGCTTCTTGT +
Preference number: 3 (lower is better)
Translates to: GHKVLSVISTVF*LESIYVIWASC
Trigger: ACAAGAAGCCCAAATCACATATATAGATTCTAAGCAGAAGACAGTTGAGATGACAGACAGCACCTTGTGTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CCA 72 bp GACCTTGCTAGGTCTCCTGCATGGCAGGCTACAAAATaGGAAATATTGATTCTTGCTATACTACTCTTATTC +
Preference number: 3 (lower is better)
Translates to: DLARSPAWQATK*EILILAILLLF
Trigger: GAATAAGAGTAGTATAGCAAGAATCAATATTTCCCATTTTGTAGCCTGCCATGCAGGAGACCTAGCAAGGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CCA 72 bp ATTGATTATGACCTCTTCGGAAAAGCGCACTTTGACTaGATTGGACTTCAATCTTGCCTTTTTAGCAGCACT +
Preference number: 3 (lower is better)
Translates to: IDYDLFGKAHFD*IGLQSCLFSST
Trigger: AGTGCTGCTAAAAAGGCAAGATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCGAAGAGGTCATAATCAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTTAGGGCATTTATTCTaGCAATCCGGGCATCAAAAG +
Preference number: 3 (lower is better)
Translates to: HTIRIQYASKTNILHTVSLGHLF*QSGHQK
Trigger: CTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAA...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCTTTGCTACAATTTCTaGCCGCTGTGTTTCAGTGTT +
Preference number: 3 (lower is better)
Translates to: HTIRIQYASKTNILHTVSLCYNF*PLCFSV
Trigger: AACACTGAAACACAGCGGCAAGAAATTGTAGCAAAG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTATCGGAAAAGCGCACTTaGACTGGATTGGACTTCAAT +
Preference number: 3 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVSEKRT*TGLDFN
Trigger: ATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCGA...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR-3UTR CAA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACCTGGGTCTGCACTTTTaGTGCTCATTAAATCTGCTT +
Preference number: 3 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHLGLHF*CSLNLL
Trigger: AAGCAGATTTAATGAGCACAAAAAGTGCAGACCCAG...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGTGTAAATCTGTGGTGTaGCATTTGCTGAGTCTCTGT +
Preference number: 3 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQCKSVV*HLLSLC
Trigger: ACAGAGACTCAGCAAATGCAACACCACAGATTTACA...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR TCA 72 bp CTGCCTCAGCAGCTTTCAGGAGACAAATATAGTTTATaGCCACTTCATCAATCTTTGCTACAATTTCTTGCC +
Preference number: 3 (lower is better)
Translates to: LPQQLSGDKYSL*PLHQSLLQFLA
Trigger: GGCAAGAAATTGTAGCAAAGATTGATGAAGTGGTCATAAACTATATTTGTCTCCTGAAAGCTGCTGAGGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR GCA 72 bp ACACAAATGTGTTCTGCACACAATCAGGATACAGTATaGATCGAAAACAAACATCCTCCACACAGTATCTTG +
Preference number: 3 (lower is better)
Translates to: TQMCSAHNQDTV*IENKHPPHSIL
Trigger: CAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTGCAGAACACATTTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTGCATTCCATATGTGTTaGCCTTTAGGGCATTTATTC +
Preference number: 3 (lower is better)
Translates to: TVCIENKHPPHSILGNMFAFHMC*PLGHLF
Trigger: GAATAAATGCCCTAAAGGCAAACACATATGGAATGC...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACCCAAAGATATAATTTGAGTGATGACAGTTCAGAACACACCTTTGTATTCCCTCCACTTCATCAATCTTaGCTACAATTTCTTGCCGCT +
Preference number: 3 (lower is better)
Translates to: TQRYNLSDDSSEHTFVFPPLHQS*LQFLAA
Trigger: AGCGGCAAGAAATTGTAGCAAAGATTGATGAAGTGG...AGGGAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAAGCTTCATGGTTGAGTaGGAAGGAAATAATGCCTTC +
Preference number: 3 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKSFMVE*EGNNAF
Trigger: GAAGGCATTATTTCCTTCCAACTCAACCATGAAGCT...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAGACATCTGTTCATaGTACACAGAAAGTAAAGAA +
Preference number: 3 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCGDICS*YTESKE
Trigger: TTCTTTACTTTCTGTGTACAATGAACAGATGTCTCC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTATGGAACACTCTAGATTaGAAATTTTGTCCCAGTAGT +
Preference number: 3 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVWNTLD*KFCPSS
Trigger: ACTACTGGGACAAAATTTCAAATCTAGAGTGTTCCA...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTAGTAGTCATCTCTACTaGATTTTCTGGAACACTCTA +
Preference number: 3 (lower is better)
Translates to: TVCIENKHPPHSILGNMFSSHLY*IFWNTL
Trigger: TAGAGTGTTCCAGAAAATCAAGTAGAGATGACTACT...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR-3UTR CAA 90 bp ACCCAAAGATATAATTTGAGTGATGACAGTTCAGAACACACCTTTGTATTCCCTATCTATATATGTGATTaGGGCTTCTTGTTCGCCTTC +
Preference number: 3 (lower is better)
Translates to: TQRYNLSDDSSEHTFVFPIYICD*GFLFAF
Trigger: GAAGGCGAACAAGAAGCCCAAATCACATATATAGAT...AGGGAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR GCA 72 bp TTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTaGACACAATCAGGATACAGTATGCATCGAAAACAA +
Preference number: 3 (lower is better)
Translates to: FFSEYALHTNVF*TQSGYSMHRKQ
Trigger: TTGTTTTCGATGCATACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR GCA 72 bp ATTTGCAATTTGAAAACAGACCATCATTTCCCTGTATaGTTCTTTTCAGAGTATGCACTACACACAAATGTG +
Preference number: 3 (lower is better)
Translates to: ICNLKTDHHFPV*FFSEYALHTNV
Trigger: CACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAAATTGCAAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTGGGAGGTCGGTCGCTaGGCGAGCAGCCAGGCCATG +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASWEVGR*ASSQAM
Trigger: CATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGGGAGGTCGGTCGCTaGGCGAGCAGCCAGGCCATG +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFWEVGR*ASSQAM
Trigger: CATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCA...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAAGGCACAACTTTGGGTaGGAGGTCGGTCGCTGGGCG +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRARHNFG*EVGRWA
Trigger: CGCCCAGCGACCGACCTCCCACCCAAAGTTGTGCCT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTCACAGGCACTGCTACTaGTGCCCGGTCCACAGCCTG +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCHRHCY*CPVHSL
Trigger: CAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTG...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGCCAGCCCGAAGACTTaGTCCTGTGGCTGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLASPKT*SCGWKA
Trigger: AGCTTTCCAGCCACAGGACCAAGTCTTCGGGCTGGC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112149.9
CDS-3UTR TCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGCCACCTGGTGTTACTaGCCGAACGACCACTGGCTT +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWATWCY*PNDHWL
Trigger: AAGCCAGTGGTCGTTCGGTCAGTAACACCAGGTGGC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGATCAGCTTGCCTTCTaGGGGGCCACCTGGTGTTAC +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWDQLAF*GATWCY
Trigger: GTAACACCAGGTGGCCCCTCAGAAGGCAAGCTGATC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTGGGCACAGCATCAATaGGGGACACAGGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASWAQHQ*GTQGSP
Trigger: AGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGCCCTTGGCCAAGTACTaGAGCATCATCAGCCCCTCC +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWPLAKY*SIISPS
Trigger: GGAGGGGCTGATGATGCTTCAGTACTTGGCCAAGGG...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCCTCACACTTGCCCTCTaGACTGGTGGGCACAGCATC +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLLTLAL*TGGHSI
Trigger: GATGCTGTGCCCACCAGTGCAGAGGGCAAGTGTGAG...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCACTCACACTTGCCCTCTaGACTGGTGGGCACAGCATC +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRALTLAL*TGGHSI
Trigger: GATGCTGTGCCCACCAGTGCAGAGGGCAAGTGTGAG...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTCCCCTCCTTCCACAGTaGCATCCTCTTTCCCTTCAG +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLPLLPQ*HPLSLQ
Trigger: CTGAAGGGAAAGAGGATGGCACTGTGGAAGGAGGGG...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACACAGGCACTGCTACTaGTGCCCGGTCCACAGCCTG +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPHRHCY*CPVHSL
Trigger: CAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGGAGTGGCACAGGCACTaGTACTGCTGCCCGGTCCAC +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLEWHRH*YCCPVH
Trigger: GTGGACCGGGCAGCAGTAGCAGTGCCTGTGCCACTC...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCGCATCTGGAATCATGTaGTTCCCCATGGACGGGCAG +
Preference number: 4 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGASGIM*FPMDGQ
Trigger: CTGCCCGTCCATGGGGAAGCACATGATTCCAGATGC...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCACCACTGAGGGGGCTTTaGAGGTGGGGAACTCTGTCT +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAPLRGL*RWGTLS
Trigger: AGACAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGG...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCGAGCAGCCAGGCCATaGGAGGACTTTGGAGGCAAG +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSRAARP*EDFGGK
Trigger: CTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGTGGGAGGTCGGTCGCTaGGCGAGCAGCCAGGCCATG +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKWEVGR*ASSQAM
Trigger: CATGGCCTGGCTGCTCGCCCAGCGACCGACCTCCCA...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCTGGAAGGCACAACTTTaGGTGGGAGGTCGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLWKAQL*VGGRSL
Trigger: CAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCA...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp CTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATaGGCATCATTTTGGGCTTCGAGAAACCCATCGGGC +
Preference number: 4 (lower is better)
Translates to: LALVALTRQSSS*ASFWASRNPSG
Trigger: GCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGGCCACCTGGTGTTACTaGCCGAACGACCACTGGCTT +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWATWCY*PNDHWL
Trigger: AAGCCAGTGGTCGTTCGGTCAGTAACACCAGGTGGC...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGGTTCGCCTTCACCAATaGAGGTGGTCATCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGVRLHQ*RWSSGA
Trigger: TGCCCCAGATGACCACCTTCATTGGTGAAGGCGAAC...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTTCCATGTGGTCTGAGTaGAGGATCTGCTTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLSMWSE*RICLEG
Trigger: GCCTTCCAAGCAGATCCTTCACTCAGACCACATGGA...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGCCCTTGGCCAAGTACTaGAGCATCATCAGCCCCTCC +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWPLAKY*SIISPS
Trigger: GGAGGGGCTGATGATGCTTCAGTACTTGGCCAAGGG...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCACAGCCTGTGTCCACTaGAGAGCCTTGAGAGCTCTG +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFTACVH*RALRAL
Trigger: CAGAGCTCTCAAGGCTCTTCAGTGGACACAGGCTGT...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGCAAGAGCAGCTTGGTaGCAGCCCCTTCAATTCTCT +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLARAAW*QPLQFS
Trigger: AGAGAATTGAAGGGGCTGGCACCAAGCTGCTCTTGC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGCTCATGGAAGGACGTTaGCTGGCTCTGAGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWLMEGR*LALSVL
Trigger: GAGGACACTCAGAGCCAGGCAACGTCCTTCCATGAG...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCGAGCAGGCACTGTCATaGGTGGACACATCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLEQALS*VDTSLL
Trigger: CAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTC...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCCTCCCATCCATAGGGTaGTACCTGGTTCAAGCCCCA +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLLPSIG*YLVQAP
Trigger: TGGGGCTTGAACCAGGTACCACCCTATGGATGGGAG...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
CDS-3UTR CCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCCACCTTTCGTGGAGCTaGGGGGATGATTTGGCAGCT +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSHLSWS*GDDLAA
Trigger: AGCTGCCAAATCATCCCCCCAGCTCCACGAAAGGTG...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCGAAGCAAGAGCAGCTTaGTGCCAGCCCCTTCAATTC +
Preference number: 4 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGEARAA*CQPLQF
Trigger: GAATTGAAGGGGCTGGCACCAAGCTGCTCTTGCTTC...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGACACCTCATCTTATaGGAGCTGGGCCTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASRHLIL*ELGLCV
Trigger: GACACAGAGGCCCAGCTCCCATAAGATGAGGTGTCT...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCAGGGGGCTTTGGAGGTaGGGAACTCTGTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLRGLWR*GTLSAL
Trigger: AAGAGCAGACAGAGTTCCCCACCTCCAAAGCCCCCT...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAAGGGGGCTTTGGAGGTaGGGAACTCTGTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRARGLWR*GTLSAL
Trigger: AAGAGCAGACAGAGTTCCCCACCTCCAAAGCCCCCT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGGCGATTCCACAGGAGTaGCACAGGCACTGCTACTGC +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWAIPQE*HRHCYC
Trigger: GCAGTAGCAGTGCCTGTGCCACTCCTGTGGAATCGC...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp TCATATGTTTCAGGGCGTGACTCCTCCTTCCTTGCCTaGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCA +
Preference number: 4 (lower is better)
Translates to: SYVSGRDSSFLA*VALTRQSSSLA
Trigger: TGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGGAAGGAGGAGTCACGCCCTGAAACATATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp ACTTCTGAGCGCTTCTCTGCCTGCACTAATGTTGCCTaGAATACACGGCCCCCATATAGTCGCAGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: TSERFSACTNVA*NTRPPYSRRSL
Trigger: CAGCGACCTGCGACTATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCAGGCAGAGAAGCGCTCAGAAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR TCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAGATCAGCTTGCCTTCTaGGGGGCCACCTGGTGTTAC +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPDQLAF*GATWCY
Trigger: GTAACACCAGGTGGCCCCTCAGAAGGCAAGCTGATC...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTTCTCTGCTCCAGCATaGGGGAGAAGTGTTCAATGC +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASFSAPA*GRSVQC
Trigger: GCATTGAACACTTCTCCCTCATGCTGGAGCAGAGAA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCCTTGCCTTTATTTTCTaGTCCTGTGTCCTGCGTGCC +
Preference number: 4 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGLAFIF*SCVLRA
Trigger: GGCACGCAGGACACAGGATCAGAAAATAAAGGCAAG...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTTGTCTGTGTCTGGAGTaGGGTCCAGGTTCTTCATGT +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLCLCLE*GPGSSC
Trigger: ACATGAAGAACCTGGACCTCACTCCAGACACAGACA...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGACGTTGCCTGGCTCTaGGTGTCCTCTTCATCAGAA +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWDVAWL*VSSSSE
Trigger: TTCTGATGAAGAGGACACTCAGAGCCAGGCAACGTC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCGACGTTGCCTGGCTCTaGGTGTCCTCTTCATCAGAA +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSDVAWL*VSSSSE
Trigger: TTCTGATGAAGAGGACACTCAGAGCCAGGCAACGTC...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGTCCATGTGGTCTGAGTaGAGGATCTGCTTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGSMWSE*RICLEG
Trigger: GCCTTCCAAGCAGATCCTTCACTCAGACCACATGGA...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACCCTTGGCCAAGTACTaGAGCATCATCAGCCCCTCC +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPPLAKY*SIISPS
Trigger: GGAGGGGCTGATGATGCTTCAGTACTTGGCCAAGGG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTACACAGGCCATGTCTGTaGGGAAGCGGTCCCCTTGGC +
Preference number: 4 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLHRPCL*GSGPLG
Trigger: GCCAAGGGGACCGCTTCCTCACAGACATGGCCTGTG...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCACTCACTCTGCAGGGATaGCATTCGCTTGGCCAAATG +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRALTLQG*HSLGQM
Trigger: CATTTGGCCAAGCGAATGTCATCCCTGCAGAGTGAG...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGACAGCCTGTGTCCACTaGAGAGCCTTGAGAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRTACVH*RALRAL
Trigger: CAGAGCTCTCAAGGCTCTTCAGTGGACACAGGCTGT...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGACTCTCTCTCTTGGTaGAGCGCTGACTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWDSLSW*SADCFI
Trigger: GATGAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGGCCCCTTCAATTCTCTaGTCCAGCATGAGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGAPSIL*SSMREK
Trigger: CTTCTCCCTCATGCTGGAGCAGAGAATTGAAGGGGC...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTCTGATCCTGTGTCCTaGGTGCCTGCGTTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASSDPVS*VPAFFL
Trigger: CAAGAAAAACGCAGGCACGCAGGACACAGGATCAGA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTTCGCGGAGATTCCTGTaGTTTCTTCAGAGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLSRRFL*FLQSVW
Trigger: CCAGACACTCTGAAGAAAGCACAGGAATCTCCGCGA...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGGAGTGGCCAAGAACATaGGGGAGAGGCTTTCCGACT +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWEWPRT*GRGFPT
Trigger: AGTCGGAAAGCCTCTCCCGCATGTTCTTGGCCACTC...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTAAATGGCCCTCACTCTaGAGGGATGACATTCGCTTG +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLKWPSL*RDDIRL
Trigger: CAAGCGAATGTCATCCCTGCAGAGTGAGGGCCATTT...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTGAGTGGCACAGGCACTaGTACTGCTGCCCGGTCCAC +
Preference number: 4 (lower is better)
Translates to: SYRHFPTVWTQWITVACTEWHRH*YCCPVH
Trigger: GTGGACCGGGCAGCAGTAGCAGTGCCTGTGCCACTC...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGCCTTCTGTCTGTGGGTaGAGTTCCTCGAAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRPSVCG*SSSKVA
Trigger: AGCCACCTTCGAGGAACTGCACCCACAGACAGAAGG...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCTCTGTTATCCTCTGCTaGCTTGCCAAAGCCCCAAGG +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLSVILC*LAKAPR
Trigger: CCTTGGGGCTTTGGCAAGGCAGCAGAGGATAACAGA...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCGATGACTCTCTCTCTTaGTGCAGCGCTGACTGCTTC +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLDDSLS*CSADCF
Trigger: GAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTCATC...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGTCATCTTATGGGAGCTaGGCCTCTGTGTCACCTGAG +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGSSYGS*ASVSPE
Trigger: CTCAGGTGACACAGAGGCCCAGCTCCCATAAGATGA...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGAGTGCCGGTGCTCTTTaGGACACAAGGTGCTGTCTG +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWSAGAL*DTRCCL
Trigger: CAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACT...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCAGGGGGCTTTGGAGGTaGGGAACTCTGTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSRGLWR*GTLSAL
Trigger: AAGAGCAGACAGAGTTCCCCACCTCCAAAGCCCCCT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGTGGAAGGCACAACTTTaGGTGGGAGGTCGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLWKAQL*VGGRSL
Trigger: CAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCA...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAAGGAAGCGGTCCCCTTaGCCAAGTACTGAAGCATCA +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRARKRSP*PSTEAS
Trigger: TGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAGCGATTCCACAGGAGTaGCACAGGCACTGCTACTGC +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPAIPQE*HRHCYC
Trigger: GCAGTAGCAGTGCCTGTGCCACTCCTGTGGAATCGC...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGCATCCCTTCTGTCTGTaGGTGCAGTTCCTCGAAGGT +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGHPFCL*VQFLEG
Trigger: ACCTTCGAGGAACTGCACCCACAGACAGAAGGGATG...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAAGGCACTGTCATGCGTaGACACATCCCTTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRARHCHA*THPFCL
Trigger: CAGACAGAAGGGATGTGTCCACGCATGACAGTGCCT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp CCACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTaGGGAGAAATCATTAGGGTCTTGATTTGGGCTTGG +
Preference number: 4 (lower is better)
Translates to: PPAHSLSECLDS*GEIIRVLIWAW
Trigger: CCAAGCCCAAATCAAGACCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCAGTGTCTCCTGTTCATaGAGCAAGAGCAGCTTGGTG +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFSVSCS*SKSSLV
Trigger: CACCAAGCTGCTCTTGCTTCATGAACAGGAGACACT...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGAGTGTCTCCTGTTCATaGAGCAAGAGCAGCTTGGTG +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGSVSCS*SKSSLV
Trigger: CACCAAGCTGCTCTTGCTTCATGAACAGGAGACACT...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATGTCTGTGTCTGGAGTaGGGTCCAGGTTCTTCATGT +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRACLCLE*GPGSSC
Trigger: ACATGAAGAACCTGGACCTCACTCCAGACACAGACA...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGACTCTCTCTCTTGGTaGAGCGCTGACTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRDSLSW*SADCFI
Trigger: GATGAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTGCCCCTTCAATTCTCTaGTCCAGCATGAGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCAPSIL*SSMREK
Trigger: CTTCTCCCTCATGCTGGAGCAGAGAATTGAAGGGGC...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCTGTGTCCTGCGTGCCTaGGTTTTTCTTGTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLCVLRA*VFLVGH
Trigger: ATGGCCAACAAGAAAAACGCAGGCACGCAGGACACA...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGATCCTGTGTCCTGCGTaGCTGCGTTTTTCTTGTTGG +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGILCPA*LRFSCW
Trigger: CCAACAAGAAAAACGCAGGCACGCAGGACACAGGAT...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAATCCTGTGTCCTGCGTaGCTGCGTTTTTCTTGTTGG +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAILCPA*LRFSCW
Trigger: CCAACAAGAAAAACGCAGGCACGCAGGACACAGGAT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCTCTGATCCTGTGTCCTaGGTGCCTGCGTTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLSDPVS*VPAFFL
Trigger: CAAGAAAAACGCAGGCACGCAGGACACAGGATCAGA...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCCCTCATTCTGCAGGCTaGTGCCTTGTTCTTTGTCCT +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFPHSAG*CLVLCP
Trigger: AGGACAAAGAACAAGGCAGCAGCCTGCAGAATGAGG...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTCTCTGTCTGCTCTTCTaGCAGAGGGTGATAGCCTTC +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCLCLLF*QRVIAF
Trigger: GAAGGCTATCACCCTCTGGCAGAAGAGCAGACAGAG...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTCTCTTGAAGACACAGTaGCAGCTTTGCCTTTGGTGT +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLLLKTQ*QLCLWC
Trigger: ACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAG...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACACAGGCACTGCTACTaGTGCCCGGTCCACAGCCTG +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRHRHCY*CPVHSL
Trigger: CAGGCTGTGGACCGGGCAGCAGTAGCAGTGCCTGTG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCGCATTAATGGCTGTGTaGAGAGCAGGCACTGTCATG +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSALMAV*RAGTVM
Trigger: CATGACAGTGCCTGCTCTGCACACAGCCATTAATGC...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCATCCATCTCTCAAAGTaGCAAACAGGGGGTCGGCAT +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSIHLSK*QTGGRH
Trigger: ATGCCGACCCCCTGTTTGGCACTTTGAGAGATGGAT...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCCCGAGGGTCATCAAATaGGATTGCCTGTGTCATGTG +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLPRVIK*DCLCHV
Trigger: CACATGACACAGGCAATCCCATTTGATGACCCTCGG...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTGAAGCAAGAGCAGCTTaGTGCCAGCCCCTTCAATTC +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCEARAA*CQPLQF
Trigger: GAATTGAAGGGGCTGGCACCAAGCTGCTCTTGCTTC...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGTCATCTTATGGGAGCTaGGCCTCTGTGTCACCTGAG +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRSSYGS*ASVSPE
Trigger: CTCAGGTGACACAGAGGCCCAGCTCCCATAAGATGA...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTAGACACCTCATCTTATaGGAGCTGGGCCTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCRHLIL*ELGLCV
Trigger: GACACAGAGGCCCAGCTCCCATAAGATGAGGTGTCT...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCAGGCACAACTTTGGGTaGGAGGTCGGTCGCTGGGCG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSRHNFG*EVGRWA
Trigger: CGCCCAGCGACCGACCTCCCACCCAAAGTTGTGCCT...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGTGAAGGATCTGCTTaGAAGGCACAACTTTGGGTG +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASSEGSA*KAQLWV
Trigger: CACCCAAAGTTGTGCCTTCCAAGCAGATCCTTCACT...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTAGTGAAGGATCTGCTTaGAAGGCACAACTTTGGGTG +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLSEGSA*KAQLWV
Trigger: CACCCAAAGTTGTGCCTTCCAAGCAGATCCTTCACT...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGGTCTCCATGGTTTCTaGCTCCATTTCCATGTGGTC +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWGLHGF*LHFHVV
Trigger: GACCACATGGAAATGGAGCCAGAAACCATGGAGACC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCTGCCAGCTTTGCCTTTaGTGTCCTCCTCTATCTCTG +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSCQLCL*CPPLSL
Trigger: CAGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCA...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCCAGCTTTGCCTTTaGTGTCCTCCTCTATCTCTG +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFCQLCL*CPPLSL
Trigger: CAGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCA...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGAAAGCTTAGTGGCATaGTCACAAGAGGGAGAGTCA +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLESLVA*SQEGES
Trigger: TGACTCTCCCTCTTGTGACCATGCCACTAAGCTTTC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCCTCTGTAGAGAAAAATaGCCCTCACTCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGLCREK*PSLCRD
Trigger: ATCCCTGCAGAGTGAGGGCCATTTTTCTCTACAGAG...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCAGGCACTGTCATGCGTaGACACATCCCTTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSRHCHA*THPFCL
Trigger: CAGACAGAAGGGATGTGTCCACGCATGACAGTGCCT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTTTCTCTGCTCCAGCATaGGGGAGAAGTGTTCAATGC +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCFSAPA*GRSVQC
Trigger: GCATTGAACACTTCTCCCTCATGCTGGAGCAGAGAA...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTCTGTGTCACCTGAGTaGGTGTCTCCTGTTCATGAA +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFSVSPE*VSPVHE
Trigger: TTCATGAACAGGAGACACTCACTCAGGTGACACAGA...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGGTCCAAATCGCTCCTaGACGACATCGTTACAACTC +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRGPNRS*TTSLQL
Trigger: GAGTTGTAACGATGTCGTTCAGGAGCGATTTGGACC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCTTGCCTTTATTTTCTaGTCCTGTGTCCTGCGTGCC +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSLAFIF*SCVLRA
Trigger: GGCACGCAGGACACAGGATCAGAAAATAAAGGCAAG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCATCCATGTGGTCTGAGTaGAGGATCTGCTTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPSMWSE*RICLEG
Trigger: GCCTTCCAAGCAGATCCTTCACTCAGACCACATGGA...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCCATTTCCATGTGGTCTaGGTGAAGGATCTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFHFHVV*VKDLLG
Trigger: TCCAAGCAGATCCTTCACTCAGACCACATGGAAATG...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTTGTCGATATATAAGTaGCGGTGCTCTTTGGGACAC +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASLSIYK*RCSLGH
Trigger: GTGTCCCAAAGAGCACCGGCACTTATATATCGACAA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGTCGCGGAGATTCCTGTaGTTTCTTCAGAGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWSRRFL*FLQSVW
Trigger: CCAGACACTCTGAAGAAAGCACAGGAATCTCCGCGA...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGCATTCTGCAGGCTGCTaGCTTGTTCTTTGTCCTCAT +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWHSAGC*LVLCPH
Trigger: ATGAGGACAAAGAACAAGGCAGCAGCCTGCAGAATG...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCCTCCCTCAGGAAGCTTaGTTTTCCTTTTGCTGGTAC +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFLPQEA*FSFCWY
Trigger: GTACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAG...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCGTCCTCCTCTATCTCTaGTATTTTGGTTCCCTGCTG +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLVLLYL*YFGSLL
Trigger: CAGCAGGGAACCAAAATAGCAGAGATAGAGGAGGAC...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCCTCTTGAAGACACAGTaGCAGCTTTGCCTTTGGTGT +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSLLKTQ*QLCLWC
Trigger: ACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAG...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAGAGTGGCACAGGCACTaGTACTGCTGCCCGGTCCAC +
Preference number: 4 (lower is better)
Translates to: IRIQYASKTNILHTVSWAEWHRH*YCCPVH
Trigger: GTGGACCGGGCAGCAGTAGCAGTGCCTGTGCCACTC...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTAATGGCTGTGTaGAGAGCAGGCACTGTCATG +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRALMAV*RAGTVM
Trigger: CATGACAGTGCCTGCTCTGCACACAGCCATTAATGC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCCGAGGGTCATCAAATaGGATTGCCTGTGTCATGTG +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSPRVIK*DCLCHV
Trigger: CACATGACACAGGCAATCCCATTTGATGACCCTCGG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGGATGACTCTCTCTCTTaGTGCAGCGCTGACTGCTTC +
Preference number: 4 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMDDSLS*CSADCF
Trigger: GAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTCATC...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGTCATCTTATGGGAGCTaGGCCTCTGTGTCACCTGAG +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLSSYGS*ASVSPE
Trigger: CTCAGGTGACACAGAGGCCCAGCTCCCATAAGATGA...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGTCATATTTCAGCTCTaGTCCAAATCGCTCCTGAAC +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLVIFQL*SKSLLN
Trigger: GTTCAGGAGCGATTTGGACCAGAGCTGAAATATGAC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTTGGTGTTTATGACATaGCTTATGCCATACCGGGGA +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASLVFMT*LMPYRG
Trigger: TCCCCGGTATGGCATAAGCCATGTCATAAACACCAA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGAATTTGCCACAAACTaGATGCTGTCTGTGTCTGGA +
Preference number: 4 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLEFATN*MLSVSG
Trigger: TCCAGACACAGACAGCATCCAGTTTGTGGCAAATTC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGATTGTCATCTCCTTCTaGAGGAGGCAGGGTTGTGAG +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRIVISF*RRQGCE
Trigger: CTCACAACCCTGCCTCCTCCAGAAGGAGATGACAAT...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCCCACTGAGGGGGCTTTaGAGGTGGGGAACTCTGTCT +
Preference number: 4 (lower is better)
Translates to: FRAFILAIRASKARLLKSPLRGL*RWGTLS
Trigger: AGACAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGG...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCGAGCAGCCAGGCCATaGGAGGACTTTGGAGGCAAG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSRAARP*EDFGGK
Trigger: CTTGCCTCCAAAGTCCTCCCATGGCCTGGCTGCTCG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCCAGACTTGGTCTCCATaGTTTCTGGCTCCATTTCCA +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLQTWSP*FLAPFP
Trigger: TGGAAATGGAGCCAGAAACCATGGAGACCAAGTCTG...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCACAGACTTGGTCTCCATaGTTTCTGGCTCCATTTCCA +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAQTWSP*FLAPFP
Trigger: TGGAAATGGAGCCAGAAACCATGGAGACCAAGTCTG...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTGCCACATACCATCTTTaGCTGTCCTTGCGAAAGGCA +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCATYHL*LSLRKA
Trigger: TGCCTTTCGCAAGGACAGCCAAAGATGGTATGTGGC...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCTGGGAAAGACTTTCATaGCTGGTGCTTCCATTCCAC +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSWERLS*LVLPFH
Trigger: GTGGAATGGAAGCACCAGCCATGAAAGTCTTTCCCA...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGAGGAAGCGGTCCCCTTaGCCAAGTACTGAAGCATCA +
Preference number: 4 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMRKRSP*PSTEAS
Trigger: TGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCT...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAGGTTATCTAAGTCTTTaGCTGAGGCTACACAGGCCA +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAGYLSL*LRLHRP
Trigger: TGGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACC...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCGGGATGACATTCGCTTaGCCAAATGGTAGTCACAAA +
Preference number: 4 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGGMTFA*PNGSHK
Trigger: TTTGTGACTACCATTTGGCCAAGCGAATGTCATCCC...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCCTCTGTAGAGAAAAATaGCCCTCACTCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFLCREK*PSLCRD
Trigger: ATCCCTGCAGAGTGAGGGCCATTTTTCTCTACAGAG...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGTCATGTGCTTCCCCATaGACGGGCAGAGGGGCGATT +
Preference number: 4 (lower is better)
Translates to: FAFRAFILAIRASKARLLSCASP*TGRGAI
Trigger: AATCGCCCCTCTGCCCGTCCATGGGGAAGCACATGA...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp GAGGGAGAGTCAGTATCTTCGGGGTTATCTAAGTCTTaGGCTGAGGCTACACAGGCCATGTCTGTGAGGAAG +
Preference number: 4 (lower is better)
Translates to: EGESVSSGLSKS*AEATQAMSVRK
Trigger: CTTCCTCACAGACATGGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACCCCGAAGATACTGACTCTCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR TCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGCGGAAAAGCGCACTTTaGCTGGATTGGACTTCAATC +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRRKSAL*LDWTSI
Trigger: GATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCG...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGCGGAAAAGCGCACTTTaGCTGGATTGGACTTCAATC +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWRKSAL*LDWTSI
Trigger: GATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCG...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGGGTCCAAATCGCTCCTaGACGACATCGTTACAACTC +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLGPNRS*TTSLQL
Trigger: GAGTTGTAACGATGTCGTTCAGGAGCGATTTGGACC...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCGGTGGTACCAAGTTTTaGTTTGCTTTGACAAGGTGG +
Preference number: 4 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLGGTKF*FALTRW
Trigger: CCACCTTGTCAAAGCAAATCAAAACTTGGTACCACC...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGGGCCATGTTAAATATTaGCCTCCTGGAGTCCACAAG +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWGHVKY*PPGVHK
Trigger: CTTGTGGACTCCAGGAGGTCAATATTTAACATGGCC...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCGTTCGCCTTCACCAATaGAGGTGGTCATCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: FRAFILAIRASKARLLKSVRLHQ*RWSSGA
Trigger: TGCCCCAGATGACCACCTTCATTGGTGAAGGCGAAC...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGTGGGCACAGCATCAATaGGGGACACAGGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: FAFRAFILAIRASKARLLWAQHQ*GTQGSP
Trigger: AGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCA...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCACAGGCCATGTCTGTaGGGAAGCGGTCCCCTTGGC +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSHRPCL*GSGPLG
Trigger: GCCAAGGGGACCGCTTCCTCACAGACATGGCCTGTG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTGGTGCAGCGCTGACTaGTTCATCATTAATCATTAC +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASWCSAD*FIINHY
Trigger: GTAATGATTAATGATGAAGCAGTCAGCGCTGCACCA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCTTGAGGGAGATTTTCTaGGTCTGTTTGGTGGTGACA +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSLREIF*VCLVVT
Trigger: TGTCACCACCAAACAGACGCAGAAAATCTCCCTCAA...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGTTCACATCTAGCACATaGAACTCCACCCTCACCAAG +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWFTSST*NSTLTK
Trigger: CTTGGTGAGGGTGGAGTTGCATGTGCTAGATGTGAA...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCTTCACATCTAGCACATaGAACTCCACCCTCACCAAG +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSFTSST*NSTLTK
Trigger: CTTGGTGAGGGTGGAGTTGCATGTGCTAGATGTGAA...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGTGTGTCCTGCGTGCCTaGGTTTTTCTTGTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLCVLRA*VFLVGH
Trigger: ATGGCCAACAAGAAAAACGCAGGCACGCAGGACACA...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGCATTCTGCAGGCTGCTaGCTTGTTCTTTGTCCTCAT +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWHSAGC*LVLCPH
Trigger: ATGAGGACAAAGAACAAGGCAGCAGCCTGCAGAATG...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGCCTCATTCTGCAGGCTaGTGCCTTGTTCTTTGTCCT +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLPHSAG*CLVLCP
Trigger: AGGACAAAGAACAAGGCAGCAGCCTGCAGAATGAGG...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCGAGTGGCCAAGAACATaGGGGAGAGGCTTTCCGACT +
Preference number: 4 (lower is better)
Translates to: FRAFILAIRASKARLLKSEWPRT*GRGFPT
Trigger: AGTCGGAAAGCCTCTCCCGCATGTTCTTGGCCACTC...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCTCCCTCAGGAAGCTTaGTTTTCCTTTTGCTGGTAC +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSLPQEA*FSFCWY
Trigger: GTACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGGTCCTCCTCTATCTCTaGTATTTTGGTTCCCTGCTG +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWVLLYL*YFGSLL
Trigger: CAGCAGGGAACCAAAATAGCAGAGATAGAGGAGGAC...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGCTCTTGAAGACACAGTaGCAGCTTTGCCTTTGGTGT +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRLLKTQ*QLCLWC
Trigger: ACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAG...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGATCTTTGGCTGTCCTTaGGAAAGGCAGTTCTCTCTA +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWIFGCP*ERQFSL
Trigger: TAGAGAGAACTGCCTTTCGCAAGGACAGCCAAAGAT...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCGACTTTCATGGCTGGTaGTTCCATTCCACTTTTCTC +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFDFHGW*FHSTFL
Trigger: GAGAAAAGTGGAATGGAAGCACCAGCCATGAAAGTC...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTACCTTCTGTCTGTGGGTaGAGTTCCTCGAAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLPSVCG*SSSKVA
Trigger: AGCCACCTTCGAGGAACTGCACCCACAGACAGAAGG...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGATGAAGGTGGTCATCTaGGGCATACAGTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWMKVVI*GIQFQS
Trigger: TGATTGGAACTGTATGCCCCAGATGACCACCTTCAT...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAGTGCCGGTGCTCTTTaGGACACAAGGTGCTGTCTG +
Preference number: 4 (lower is better)
Translates to: FAFRAFILAIRASKARLLSAGAL*DTRCCL
Trigger: CAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACT...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCTGGAAGGCACAACTTTaGGTGGGAGGTCGGTCGCTG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSWKAQL*VGGRSL
Trigger: CAGCGACCGACCTCCCACCCAAAGTTGTGCCTTCCA...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGCTCTGTAGAGAAAAATaGCCCTCACTCTGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWLCREK*PSLCRD
Trigger: ATCCCTGCAGAGTGAGGGCCATTTTTCTCTACAGAG...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATCTTGGGCAGTCGATaGCATCCATCTCTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWILGSR*HPSLKV
Trigger: CACTTTGAGAGATGGATGCCATCGACTGCCCAAGAT...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCCACCTGGTGTTACTaGCCGAACGACCACTGGCTT +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTATWCY*PNDHWL
Trigger: AAGCCAGTGGTCGTTCGGTCAGTAACACCAGGTGGC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCACTTTGGGAACAAAACTaGTTCGGAAAAGACACCTCA +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRALWEQN*FGKDTS
Trigger: TGAGGTGTCTTTTCCGAATCAGTTTTGTTCCCAAAG...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAGCACTAATGTTGCCTTaGATACACGGCCCCCATATA +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPALMLP*IHGPHI
Trigger: TATATGGGGGCCGTGTATTCAAGGCAACATTAGTGC...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGGCACTAATGTTGCCTTaGATACACGGCCCCCATATA +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLALMLP*IHGPHI
Trigger: TATATGGGGGCCGTGTATTCAAGGCAACATTAGTGC...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTACAGGAATATGCTACTaGCCCCATATGCAGTTTGCT +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCTGICY*PHMQFA
Trigger: AGCAAACTGCATATGGGGTCAGTAGCATATTCCTGT...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATCACAGGCCATGTCTGTaGGGAAGCGGTCCCCTTGGC +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNHRPCL*GSGPLG
Trigger: GCCAAGGGGACCGCTTCCTCACAGACATGGCCTGTG...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTCTCACTCTGCAGGGATaGCATTCGCTTGGCCAAATG +
Preference number: 4 (lower is better)
Translates to: SYRHFPTVWTQWITVACTLTLQG*HSLGQM
Trigger: CATTTGGCCAAGCGAATGTCATCCCTGCAGAGTGAG...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGGGCTCTCTCCTCTGGTaGAATATATCTCCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLGSLLW*NISPSF
Trigger: AAAGGAGGGAGATATATTTCACCAGAGGAGAGAGCC...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCTGGTGCAGCGCTGACTaGTTCATCATTAATCATTAC +
Preference number: 4 (lower is better)
Translates to: LVSFFPRGSSARLSELTSWCSAD*FIINHY
Trigger: GTAATGATTAATGATGAAGCAGTCAGCGCTGCACCA...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTAGACTCTCTCTCTTGGTaGAGCGCTGACTGCTTCATC +
Preference number: 4 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLDSLSW*SADCFI
Trigger: GATGAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTC...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGGCAAGAGCAGCTTGGTaGCAGCCCCTTCAATTCTCT +
Preference number: 4 (lower is better)
Translates to: FAFRAFILAIRASKARLLARAAW*QPLQFS
Trigger: AGAGAATTGAAGGGGCTGGCACCAAGCTGCTCTTGC...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCTGTTCTTCTCTTTCATaGTCTGCAGCACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSCSSLS*SAAQQM
Trigger: CATCTGCTGTGCTGCAGAGCATGAAAGAGAAGAACA...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACAAGGTGGGAGAGTaGTTTCTTGATGTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSDKVGE*FLDVLL
Trigger: GAGAAGAACATCAAGAAAGCACTCTCCCACCTTGTC...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCCTCATCTTCATCTTCTaGATCGTCCGTATTTTCTGC +
Preference number: 4 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFLIFIF*IVRIFC
Trigger: GCAGAAAATACGGACGATGCAGAAGATGAAGATGAG...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCTCATGGAAGGACGTTaGCTGGCTCTGAGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSLMEGR*LALSVL
Trigger: GAGGACACTCAGAGCCAGGCAACGTCCTTCCATGAG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACATTCTGCAGGCTGCTaGCTTGTTCTTTGTCCTCAT +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPHSAGC*LVLCPH
Trigger: ATGAGGACAAAGAACAAGGCAGCAGCCTGCAGAATG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATCTTTGGCTGTCCTTaGGAAAGGCAGTTCTCTCTA +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWIFGCP*ERQFSL
Trigger: TAGAGAGAACTGCCTTTCGCAAGGACAGCCAAAGAT...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCATCTTTGGCTGTCCTTaGGAAAGGCAGTTCTCTCTA +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSIFGCP*ERQFSL
Trigger: TAGAGAGAACTGCCTTTCGCAAGGACAGCCAAAGAT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCCCCTCCTTCCACAGTaGCATCCTCTTTCCCTTCAG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSPLLPQ*HPLSLQ
Trigger: CTGAAGGGAAAGAGGATGGCACTGTGGAAGGAGGGG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACACCTTTCGTGGAGCTaGGGGGATGATTTGGCAGCT +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRHLSWS*GDDLAA
Trigger: AGCTGCCAAATCATCCCCCCAGCTCCACGAAAGGTG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGGAAGCAAGAGCAGCTTaGTGCCAGCCCCTTCAATTC +
Preference number: 4 (lower is better)
Translates to: FAFRAFILAIRASKARLLEARAA*CQPLQF
Trigger: GAATTGAAGGGGCTGGCACCAAGCTGCTCTTGCTTC...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTGTCATATTTCAGCTCTaGTCCAAATCGCTCCTGAAC +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCVIFQL*SKSLLN
Trigger: GTTCAGGAGCGATTTGGACCAGAGCTGAAATATGAC...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGTTTGCTTTGACAAGGTaGGAGAGTGCTTTCTTGATG +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGFALTR*ESAFLM
Trigger: CATCAAGAAAGCACTCTCCCACCTTGTCAAAGCAAA...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATGAAGGTGGTCATCTaGGGCATACAGTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWMKVVI*GIQFQS
Trigger: TGATTGGAACTGTATGCCCCAGATGACCACCTTCAT...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAAGGCACAACTTTGGGTaGGAGGTCGGTCGCTGGGCG +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVRHNFG*EVGRWA
Trigger: CGCCCAGCGACCGACCTCCCACCCAAAGTTGTGCCT...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGCAGACTTGGTCTCCATaGTTTCTGGCTCCATTTCCA +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLQTWSP*FLAPFP
Trigger: TGGAAATGGAGCCAGAAACCATGGAGACCAAGTCTG...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCTCATGTGCTTCCCCATaGACGGGCAGAGGGGCGATT +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTSCASP*TGRGAI
Trigger: AATCGCCCCTCTGCCCGTCCATGGGGAAGCACATGA...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGCATCCCTTCTGTCTGTaGGTGCAGTTCCTCGAAGGT +
Preference number: 4 (lower is better)
Translates to: FAFRAFILAIRASKARLLHPFCL*VQFLEG
Trigger: ACCTTCGAGGAACTGCACCCACAGACAGAAGGGATG...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCAGGCACTGTCATGCGTaGACACATCCCTTCTGTCTG +
Preference number: 4 (lower is better)
Translates to: FRAFILAIRASKARLLKSRHCHA*THPFCL
Trigger: CAGACAGAAGGGATGTGTCCACGCATGACAGTGCCT...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp AAATTTTGTCCCAGTAGTAGGCTGTCTTTCCACGTTTaGTTGCTAGCCATGCTCCTGTCAGAGAGGGGCAAC +
Preference number: 4 (lower is better)
Translates to: KFCPSSRLSFHV*LLAMLLSERGN
Trigger: GTTGCCCCTCTCTGACAGGAGCATGGCTAGCAACAAAACGTGGAAAGACAGCCTACTACTGGGACAAAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
3UTR CAA 72 bp GGATTGTCTCTTGAAGACACAGTGCCAGCTTTGCCTTaGGTGTCCTCCTCTATCTCTGCTATTTTGGTTCCC +
Preference number: 4 (lower is better)
Translates to: GLSLEDTVPALP*VSSSISAILVP
Trigger: GGGAACCAAAATAGCAGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCACTGTGTCTTCAAGAGACAATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 72 bp AGGCTCTGTCAAAGCTACACTGTGGTTTCCTTAATCTaGGGCAGTCGATGGCATCCATCTCTCAAAGTGCCA +
Preference number: 4 (lower is better)
Translates to: RLCQSYTVVSLI*GSRWHPSLKVP
Trigger: TGGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGTGTAGCTTTGACAGAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR TCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCAGTGTCTCCTGTTCATaGAGCAAGAGCAGCTTGGTG +
Preference number: 4 (lower is better)
Translates to: FRAFILAIRASKARLLKSSVSCS*SKSSLV
Trigger: CACCAAGCTGCTCTTGCTTCATGAACAGGAGACACT...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCCTTTGGGAACAAAACTaGTTCGGAAAAGACACCTCA +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSLWEQN*FGKDTS
Trigger: TGAGGTGTCTTTTCCGAATCAGTTTTGTTCCCAAAG...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCTGTCTGTGTCTGGAGTaGGGTCCAGGTTCTTCATGT +
Preference number: 4 (lower is better)
Translates to: FRAFILAIRASKARLLKSCLCLE*GPGSSC
Trigger: ACATGAAGAACCTGGACCTCACTCCAGACACAGACA...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCGACGTTGCCTGGCTCTaGGTGTCCTCTTCATCAGAA +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSDVAWL*VSSSSE
Trigger: TTCTGATGAAGAGGACACTCAGAGCCAGGCAACGTC...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGCAAGATGGCTACACCTaGATTTTCACTCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLQDGYT*IFTLLL
Trigger: CAGCAGAAGAGTGAAAATTCAGGTGTAGCCATCTTG...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACAAGATGGCTACACCTaGATTTTCACTCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPQDGYT*IFTLLL
Trigger: CAGCAGAAGAGTGAAAATTCAGGTGTAGCCATCTTG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTACAGCCTGTGTCCACTaGAGAGCCTTGAGAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILTACVH*RALRAL
Trigger: CAGAGCTCTCAAGGCTCTTCAGTGGACACAGGCTGT...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGATTGGACTTCAATCTTaGCTTTTTAGCAGCACTGAT +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASIGLQS*LFSSTD
Trigger: ATCAGTGCTGCTAAAAAGGCAAGATTGAAGTCCAAT...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGTTGAGGGAGATTTTCTaGGTCTGTTTGGTGGTGACA +
Preference number: 4 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMLREIF*VCLVVT
Trigger: TGTCACCACCAAACAGACGCAGAAAATCTCCCTCAA...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGTGTTCTTCTCTTTCATaGTCTGCAGCACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLCSSLS*SAAQQM
Trigger: CATCTGCTGTGCTGCAGAGCATGAAAGAGAAGAACA...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGGACAAGGTGGGAGAGTaGTTTCTTGATGTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLDKVGE*FLDVLL
Trigger: GAGAAGAACATCAAGAAAGCACTCTCCCACCTTGTC...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGCAAGGAGATTATGCTTaGCTTTATTTTCTGATCCTG +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASQGDYA*LYFLIL
Trigger: CAGGATCAGAAAATAAAGGCAAGCATAATCTCCTTG...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGGAATTTTCACTCTTCTaGTGTTCTTCTGAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: ALVALTRQSSSLASFWASEFSLF*CSSERA
Trigger: AGCTCTTTCAGAAGAACAGCAGAAGAGTGAAAATTC...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGAGTGGCCAAGAACATaGGGGAGAGGCTTTCCGACT +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTEWPRT*GRGFPT
Trigger: AGTCGGAAAGCCTCTCCCGCATGTTCTTGGCCACTC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCTCTGTCTGCTCTTCTaGCAGAGGGTGATAGCCTTC +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSLCLLF*QRVIAF
Trigger: GAAGGCTATCACCCTCTGGCAGAAGAGCAGACAGAG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGGACTTTCATGGCTGGTaGTTCCATTCCACTTTTCTC +
Preference number: 4 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMDFHGW*FHSTFL
Trigger: GAGAAAAGTGGAATGGAAGCACCAGCCATGAAAGTC...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCATCTGGAATCATGTaGTTCCCCATGGACGGGCAG +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILASGIM*FPMDGQ
Trigger: CTGCCCGTCCATGGGGAAGCACATGATTCCAGATGC...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGATCCATCTCTCAAAGTaGCAAACAGGGGGTCGGCAT +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKIHLSK*QTGGRH
Trigger: ATGCCGACCCCCTGTTTGGCACTTTGAGAGATGGAT...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGACAGTTTCCGACACTTaGCCATTGATTATGACCTCT +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRTVSDT*PLIMTS
Trigger: AGAGGTCATAATCAATGGCCAAGTGTCGGAAACTGT...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGTTTGCTTTGACAAGGTaGGAGAGTGCTTTCTTGATG +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWFALTR*ESAFLM
Trigger: CATCAAGAAAGCACTCTCCCACCTTGTCAAAGCAAA...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGAGCTTTTTACCCGGTaGTACCAAGTTTTGATTTGC +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRELFTR*YQVLIC
Trigger: GCAAATCAAAACTTGGTACCACCGGGTAAAAAGCTC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTGAGCTTTTTACCCGGTaGTACCAAGTTTTGATTTGC +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCELFTR*YQVLIC
Trigger: GCAAATCAAAACTTGGTACCACCGGGTAAAAAGCTC...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCATTGGTGTTTATGACATaGCTTATGCCATACCGGGGA +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPLVFMT*LMPYRG
Trigger: TCCCCGGTATGGCATAAGCCATGTCATAAACACCAA...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATCAATCCTGTTGACATaGCTGAAGTCAGCTAAAAGA +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRASILLT*LKSAKR
Trigger: TCTTTTAGCTGACTTCAGCCATGTCAACAGGATTGA...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGATGAAGGTGGTCATCTaGGGCATACAGTTCCAATCA +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLMKVVI*GIQFQS
Trigger: TGATTGGAACTGTATGCCCCAGATGACCACCTTCAT...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCGATAGCCTTCATGAGTaGCCAAGAACATGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: FRAFILAIRASKARLLKSDSLHE*PRTCGR
Trigger: TCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATC...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGATAGCCTTCATGAGTaGCCAAGAACATGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKDSLHE*PRTCGR
Trigger: TCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTAGGTCTCCATGGTTTCTaGCTCCATTTCCATGTGGTC +
Preference number: 4 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLGLHGF*LHFHVV
Trigger: GACCACATGGAAATGGAGCCAGAAACCATGGAGACC...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGCCACATACCATCTTTaGCTGTCCTTGCGAAAGGCA +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKATYHL*LSLRKA
Trigger: TGCCTTTCGCAAGGACAGCCAAAGATGGTATGTGGC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGACATCCCTTCTGTCTGTaGGTGCAGTTCCTCGAAGGT +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRHPFCL*VQFLEG
Trigger: ACCTTCGAGGAACTGCACCCACAGACAGAAGGGATG...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTTTTGATTTGCTTTaGCAAGGTGGGAGAGTGCTT +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLSFDLL*QGGRVL
Trigger: AAGCACTCTCCCACCTTGTCAAAGCAAATCAAAACT...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGGCCATGTTAAATATTaGCCTCCTGGAGTCCACAAG +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKGHVKY*PPGVHK
Trigger: CTTGTGGACTCCAGGAGGTCAATATTTAACATGGCC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGTTCGCCTTCACCAATaGAGGTGGTCATCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSVRLHQ*RWSSGA
Trigger: TGCCCCAGATGACCACCTTCATTGGTGAAGGCGAAC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCACTCACTCTGCAGGGATaGCATTCGCTTGGCCAAATG +
Preference number: 4 (lower is better)
Translates to: IRIQYASKTNILHTVSWALTLQG*HSLGQM
Trigger: CATTTGGCCAAGCGAATGTCATCCCTGCAGAGTGAG...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGGTCATCAAATGGGATTaGCTGTGTCATGTGATTGAT +
Preference number: 4 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWVIKWD*LCHVID
Trigger: ATCAATCACATGACACAGGCAATCCCATTTGATGAC...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGTCATCAAATGGGATTaGCTGTGTCATGTGATTGAT +
Preference number: 4 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRVIKWD*LCHVID
Trigger: ATCAATCACATGACACAGGCAATCCCATTTGATGAC...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCATAGACAACTTCTCTTaGAGGGTTAAGATGACATCC +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSIDNFS*RVKMTS
Trigger: GGATGTCATCTTAACCCTGCAAGAGAAGTTGTCTAT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAGCAAGAGCAGCTTGGTaGCAGCCCCTTCAATTCTCT +
Preference number: 4 (lower is better)
Translates to: IRIQYASKTNILHTVSWAARAAW*QPLQFS
Trigger: AGAGAATTGAAGGGGCTGGCACCAAGCTGCTCTTGC...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGCAAGGAGATTATGCTTaGCTTTATTTTCTGATCCTG +
Preference number: 4 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGQGDYA*LYFLIL
Trigger: CAGGATCAGAAAATAAAGGCAAGCATAATCTCCTTG...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCTCATGGAAGGACGTTaGCTGGCTCTGAGTGTCCTC +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSLMEGR*LALSVL
Trigger: GAGGACACTCAGAGCCAGGCAACGTCCTTCCATGAG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGGGATCTCCTCATTCTaGAGGCTGCTGCCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILGISSF*RLLPCS
Trigger: AGAACAAGGCAGCAGCCTGCAGAATGAGGAGATCCC...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGGGATCTCCTCATTCTaGAGGCTGCTGCCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTGISSF*RLLPCS
Trigger: AGAACAAGGCAGCAGCCTGCAGAATGAGGAGATCCC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCAAATGGCCCTCACTCTaGAGGGATGACATTCGCTTG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSKWPSL*RDDIRL
Trigger: CAAGCGAATGTCATCCCTGCAGAGTGAGGGCCATTT...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAGCCAGCCCGAAGACTTaGTCCTGTGGCAGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKASPKT*SCGSCV
Trigger: CACACAGCTGCCACAGGACCAAGTCTTCGGGCTGGC...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112145.3
CDS-3UTR CCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCACCTTTCGTGGAGCTaGGGGGATGATTTGGCAGCT +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSHLSWS*GDDLAA
Trigger: AGCTGCCAAATCATCCCCCCAGCTCCACGAAAGGTG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGACAGTTTCCGACACTTaGCCATTGATTATGACCTCT +
Preference number: 4 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLTVSDT*PLIMTS
Trigger: AGAGGTCATAATCAATGGCCAAGTGTCGGAAACTGT...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCATTTGCTTTGACAAGGTaGGAGAGTGCTTTCTTGATG +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPFALTR*ESAFLM
Trigger: CATCAAGAAAGCACTCTCCCACCTTGTCAAAGCAAA...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGTCTATATATGTGATTTaGGCTTCTTGTTCGCCTTCA +
Preference number: 4 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWSIYVI*ASCSPS
Trigger: TGAAGGCGAACAAGAAGCCCAAATCACATATATAGA...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATCTATATATGTGATTTaGGCTTCTTGTTCGCCTTCA +
Preference number: 4 (lower is better)
Translates to: QGRAAHWHHFGLRETHRASIYVI*ASCSPS
Trigger: TGAAGGCGAACAAGAAGCCCAAATCACATATATAGA...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCATTGTCATCTCCTTCTaGAGGAGGCAGGGTTGTGAG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSIVISF*RRQGCE
Trigger: CTCACAACCCTGCCTCCTCCAGAAGGAGATGACAAT...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGCCACTGAGGGGGCTTTaGAGGTGGGGAACTCTGTCT +
Preference number: 4 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQPLRGL*RWGTLS
Trigger: AGACAGAGTTCCCCACCTCCAAAGCCCCCTCAGTGG...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp AGTTCTTCCCCTTGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCAAAGACTTTCATGGCTaGTGCTTCCATTCCACTTTT +
Preference number: 4 (lower is better)
Translates to: SSSPCFCSPTTRDELPGSKDFHG*CFHSTF
Trigger: AAAAGTGGAATGGAAGCACCAGCCATGAAAGTCTTT...GGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCAAGGGGAAGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGTGGGAAAGACTTTCATaGCTGGTGCTTCCATTCCAC +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKWERLS*LVLPFH
Trigger: GTGGAATGGAAGCACCAGCCATGAAAGTCTTTCCCA...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCAGGAAGCGGTCCCCTTaGCCAAGTACTGAAGCATCA +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTRKRSP*PSTEAS
Trigger: TGATGCTTCAGTACTTGGCCAAGGGGACCGCTTCCT...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATGCGATTCCACAGGAGTaGCACAGGCACTGCTACTGC +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNAIPQE*HRHCYC
Trigger: GCAGTAGCAGTGCCTGTGCCACTCCTGTGGAATCGC...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTTCATGTGCTTCCCCATaGACGGGCAGAGGGGCGATT +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCSCASP*TGRGAI
Trigger: AATCGCCCCTCTGCCCGTCCATGGGGAAGCACATGA...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
3UTR CAA 72 bp CTGTATGAGTTGTCGATATATAAGTGCCGGTGCTCTTaGGGACACAAGGTGCTGTCTGTCATCTCAACTGTC +
Preference number: 4 (lower is better)
Translates to: LYELSIYKCRCS*GHKVLSVISTV
Trigger: GACAGTTGAGATGACAGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTTATATATCGACAACTCATACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 72 bp GTCAGCGGCTGGTTAAGTTCATCTGAACTGTATGAGTaGTCGATATATAAGTGCCGGTGCTCTTTGGGACAC +
Preference number: 4 (lower is better)
Translates to: VSGWLSSSELYE*SIYKCRCSLGH
Trigger: GTGTCCCAAAGAGCACCGGCACTTATATATCGACAACTCATACAGTTCAGATGAACTTAACCAGCCGCTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 72 bp GCAGTTCTCTCTAGGTTAAAAGTGCTGAGGTGTGGATaGTCTCTTGAAGACACAGTGCCAGCTTTGCCTTTG +
Preference number: 4 (lower is better)
Translates to: AVLSRLKVLRCG*SLEDTVPALPL
Trigger: CAAAGGCAAAGCTGGCACTGTGTCTTCAAGAGACAATCCACACCTCAGCACTTTTAACCTAGAGAGAACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR TCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAGGCCATGTTAAATATTaGCCTCCTGGAGTCCACAAG +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRGHVKY*PPGVHK
Trigger: CTTGTGGACTCCAGGAGGTCAATATTTAACATGGCC...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGATGTCATTGGCACTGCTaGTGTAGAGATTCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRCHWHC*CRDSSA
Trigger: AGCAGAGGAATCTCTACATCAGCAGTGCCAATGACA...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTATGGGCACAGCATCAATaGGGGACACAGGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVWAQHQ*GTQGSP
Trigger: AGGAGATCCCTGTGTCCCTCATTGATGCTGTGCCCA...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGCAAGATGGCTACACCTaGATTTTCACTCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKQDGYT*IFTLLL
Trigger: CAGCAGAAGAGTGAAAATTCAGGTGTAGCCATCTTG...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTTGTTCTTCTCTTTCATaGTCTGCAGCACAGCAGATG +
Preference number: 4 (lower is better)
Translates to: SYRHFPTVWTQWITVACTCSSLS*SAAQQM
Trigger: CATCTGCTGTGCTGCAGAGCATGAAAGAGAAGAACA...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGACAAGGTGGGAGAGTaGTTTCTTGATGTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKDKVGE*FLDVLL
Trigger: GAGAAGAACATCAAGAAAGCACTCTCCCACCTTGTC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGATATATAAGTGCCGGTaGTCTTTGGGACACAAGGTG +
Preference number: 4 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKIYKCR*SLGHKV
Trigger: CACCTTGTGTCCCAAAGAGCACCGGCACTTATATAT...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCATCGCGGAGATTCCTGTaGTTTCTTCAGAGTGTCTGG +
Preference number: 4 (lower is better)
Translates to: IRIQYASKTNILHTVSWASRRFL*FLQSVW
Trigger: CCAGACACTCTGAAGAAAGCACAGGAATCTCCGCGA...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTCCTCATTCTGCAGGCTaGTGCCTTGTTCTTTGTCCT +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILPHSAG*CLVLCP
Trigger: AGGACAAAGAACAAGGCAGCAGCCTGCAGAATGAGG...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGGGATCTCCTCATTCTaGAGGCTGCTGCCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSGISSF*RLLPCS
Trigger: AGAACAAGGCAGCAGCCTGCAGAATGAGGAGATCCC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCAAAGATATAATTTGAGTGATGACAGTTCAGAACACACCTTTGTATTCCCTCTCACACTTGCCCTCTaGACTGGTGGGCACAGCATC +
Preference number: 4 (lower is better)
Translates to: TQRYNLSDDSSEHTFVFPLTLAL*TGGHSI
Trigger: GATGCTGTGCCCACCAGTGCAGAGGGCAAGTGTGAG...AGGGAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTGAATTTTCACTCTTCTaGTGTTCTTCTGAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: LSWKVSKPTGPERILLLCEFSLF*CSSERA
Trigger: AGCTCTTTCAGAAGAACAGCAGAAGAGTGAAAATTC...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTCTCTGTCTGCTCTTCTaGCAGAGGGTGATAGCCTTC +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSLCLLF*QRVIAF
Trigger: GAAGGCTATCACCCTCTGGCAGAAGAGCAGACAGAG...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCTCCCTCAGGAAGCTTaGTTTTCCTTTTGCTGGTAC +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSLPQEA*FSFCWY
Trigger: GTACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTACCCCTCCTTCCACAGTaGCATCCTCTTTCCCTTCAG +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVPLLPQ*HPLSLQ
Trigger: CTGAAGGGAAAGAGGATGGCACTGTGGAAGGAGGGG...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCAAATGGCCCTCACTCTaGAGGGATGACATTCGCTTG +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTKWPSL*RDDIRL
Trigger: CAAGCGAATGTCATCCCTGCAGAGTGAGGGCCATTT...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATGCATCTGGAATCATGTaGTTCCCCATGGACGGGCAG +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNASGIM*FPMDGQ
Trigger: CTGCCCGTCCATGGGGAAGCACATGATTCCAGATGC...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGAGCAGGCACTGTCATaGGTGGACACATCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCEQALS*VDTSLL
Trigger: CAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGAGCAGGCACTGTCATaGGTGGACACATCCCTTCTG +
Preference number: 4 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQEQALS*VDTSLL
Trigger: CAGAAGGGATGTGTCCACGCATGACAGTGCCTGCTC...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACCTCCCATCCATAGGGTaGTACCTGGTTCAAGCCCCA +
Preference number: 4 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHLPSIG*YLVQAP
Trigger: TGGGGCTTGAACCAGGTACCACCCTATGGATGGGAG...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000112145.3
CDS-3UTR CCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCAAAAGACTTTCATGGCTaGTGCTTCCATTCCACTTTT +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPKDFHG*CFHSTF
Trigger: AAAAGTGGAATGGAAGCACCAGCCATGAAAGTCTTT...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGATCTGTTACCCAAGCCTaGACCTCTGGGAAAGACTTT +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRSVTQA*TSGKDF
Trigger: AAAGTCTTTCCCAGAGGTCCAGGCTTGGGTAACAGA...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAGGTTATCTAAGTCTTTaGCTGAGGCTACACAGGCCA +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRGYLSL*LRLHRP
Trigger: TGGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACC...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAGAAAGCTTAGTGGCATaGTCACAAGAGGGAGAGTCA +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRESLVA*SQEGES
Trigger: TGACTCTCCCTCTTGTGACCATGCCACTAAGCTTTC...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp TTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTaGAGTCTTTATGAGACATGGGGGACCTTTTGTGAA +
Preference number: 4 (lower is better)
Translates to: FPASVRVGSYTP*SLYETWGTFCE
Trigger: TTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCCGGAAAAGCGCACTTTaGCTGGATTGGACTTCAATC +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTRKSAL*LDWTSI
Trigger: GATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCG...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCTCTGTGTCACCTGAGTaGGTGTCTCCTGTTCATGAA +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTSVSPE*VSPVHE
Trigger: TTCATGAACAGGAGACACTCACTCAGGTGACACAGA...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCGGTGGTACCAAGTTTTaGTTTGCTTTGACAAGGTGG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSGGTKF*FALTRW
Trigger: CCACCTTGTCAAAGCAAATCAAAACTTGGTACCACC...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTTGTCATTGGCACTGCTaGTGTAGAGATTCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILCHWHC*CRDSSA
Trigger: AGCAGAGGAATCTCTACATCAGCAGTGCCAATGACA...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAACAGGAATATGCTACTaGCCCCATATGCAGTTTGCT +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRTGICY*PHMQFA
Trigger: AGCAAACTGCATATGGGGTCAGTAGCATATTCCTGT...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGATTGGACTTCAATCTTaGCTTTTTAGCAGCACTGAT +
Preference number: 4 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMIGLQS*LFSSTD
Trigger: ATCAGTGCTGCTAAAAAGGCAAGATTGAAGTCCAAT...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGCCCCTTCAATTCTCTaGTCCAGCATGAGGGAGAAG +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVAPSIL*SSMREK
Trigger: CTTCTCCCTCATGCTGGAGCAGAGAATTGAAGGGGC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCTTCACATCTAGCACATaGAACTCCACCCTCACCAAG +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTFTSST*NSTLTK
Trigger: CTTGGTGAGGGTGGAGTTGCATGTGCTAGATGTGAA...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAATATATAAGTGCCGGTaGTCTTTGGGACACAAGGTG +
Preference number: 4 (lower is better)
Translates to: PLSLYETWGTFCETFPQRIYKCR*SLGHKV
Trigger: CACCTTGTGTCCCAAAGAGCACCGGCACTTATATAT...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACACATCACCTATGTTTaGATATACAGAATTTGCCAC +
Preference number: 4 (lower is better)
Translates to: RAAMVVECRIDSPILGSPHITYV*IYRICH
Trigger: GTGGCAAATTCTGTATATGCAAACATAGGTGATGTG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCATAAAACAGCAGAGTaGCGGCAAACATGTTCTCTG +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSHKTAE*RQTCSL
Trigger: CAGAGAACATGTTTGCCGGCACTCTGCTGTTTTATG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR CCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTAGACACCTCATCTTATaGGAGCTGGGCCTCTGTGTC +
Preference number: 4 (lower is better)
Translates to: TVCIENKHPPHSILGNMFRHLIL*ELGLCV
Trigger: GACACAGAGGCCCAGCTCCCATAAGATGAGGTGTCT...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGGTCTCCATGGTTTCTaGCTCCATTTCCATGTGGTC +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSGLHGF*LHFHVV
Trigger: GACCACATGGAAATGGAGCCAGAAACCATGGAGACC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCTGGGAAAGACTTTCATaGCTGGTGCTTCCATTCCAC +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTWERLS*LVLPFH
Trigger: GTGGAATGGAAGCACCAGCCATGAAAGTCTTTCCCA...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCATCTGTTACCCAAGCCTaGACCTCTGGGAAAGACTTT +
Preference number: 4 (lower is better)
Translates to: IRIQYASKTNILHTVSWASVTQA*TSGKDF
Trigger: AAAGTCTTTCCCAGAGGTCCAGGCTTGGGTAACAGA...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTTCTGTTACCCAAGCCTaGACCTCTGGGAAAGACTTT +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILSVTQA*TSGKDF
Trigger: AAAGTCTTTCCCAGAGGTCCAGGCTTGGGTAACAGA...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
3UTR CAA 72 bp CCTCAGGGGCCTCAAAGTTCTTCACATCACCTATGTTaGCATATACAGAATTTGCCACAAACTGGATGCTGT +
Preference number: 4 (lower is better)
Translates to: PQGPQSSSHHLC*HIQNLPQTGCC
Trigger: ACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAAACATAGGTGATGTGAAGAACTTTGAGGCCCCTGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR TCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTTTCTCTGCTCCAGCATaGGGGAGAAGTGTTCAATGC +
Preference number: 4 (lower is better)
Translates to: TVCIENKHPPHSILGNMFFSAPA*GRSVQC
Trigger: GCATTGAACACTTCTCCCTCATGCTGGAGCAGAGAA...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTCTGTGTCACCTGAGTaGGTGTCTCCTGTTCATGAA +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSSVSPE*VSPVHE
Trigger: TTCATGAACAGGAGACACTCACTCAGGTGACACAGA...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGTCCAAATCGCTCCTaGACGACATCGTTACAACTC +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCGPNRS*TTSLQL
Trigger: GAGTTGTAACGATGTCGTTCAGGAGCGATTTGGACC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGGTGGTACCAAGTTTTaGTTTGCTTTGACAAGGTGG +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTGGTKF*FALTRW
Trigger: CCACCTTGTCAAAGCAAATCAAAACTTGGTACCACC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGCTTGCCTTTATTTTCTaGTCCTGTGTCCTGCGTGCC +
Preference number: 4 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQLAFIF*SCVLRA
Trigger: GGCACGCAGGACACAGGATCAGAAAATAAAGGCAAG...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGTGTCATTGGCACTGCTaGTGTAGAGATTCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRCHWHC*CRDSSA
Trigger: AGCAGAGGAATCTCTACATCAGCAGTGCCAATGACA...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGGCTCTCTCCTCTGGTaGAATATATCTCCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSGSLLW*NISPSF
Trigger: AAAGGAGGGAGATATATTTCACCAGAGGAGAGAGCC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTATAGACAACTTCTCTTaGAGGGTTAAGATGACATCC +
Preference number: 4 (lower is better)
Translates to: SYRHFPTVWTQWITVACTIDNFS*RVKMTS
Trigger: GGATGTCATCTTAACCCTGCAAGAGAAGTTGTCTAT...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTTGTGTCCTGCGTGCCTaGGTTTTTCTTGTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCCVLRA*VFLVGH
Trigger: ATGGCCAACAAGAAAAACGCAGGCACGCAGGACACA...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTATCCTGTGTCCTGCGTaGCTGCGTTTTTCTTGTTGG +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCILCPA*LRFSCW
Trigger: CCAACAAGAAAAACGCAGGCACGCAGGACACAGGAT...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTTCTGATCCTGTGTCCTaGGTGCCTGCGTTTTTCTTG +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCSDPVS*VPAFFL
Trigger: CAAGAAAAACGCAGGCACGCAGGACACAGGATCAGA...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCCTCATCTTCATCTTCTaGATCGTCCGTATTTTCTGC +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSLIFIF*IVRIFC
Trigger: GCAGAAAATACGGACGATGCAGAAGATGAAGATGAG...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTGCATTAATGGCTGTGTaGAGAGCAGGCACTGTCATG +
Preference number: 4 (lower is better)
Translates to: TVCIENKHPPHSILGNMFALMAV*RAGTVM
Trigger: CATGACAGTGCCTGCTCTGCACACAGCCATTAATGC...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATATCCATCTCTCAAAGTaGCAAACAGGGGGTCGGCAT +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNIHLSK*QTGGRH
Trigger: ATGCCGACCCCCTGTTTGGCACTTTGAGAGATGGAT...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACCCAAAGATATAATTTGAGTGATGACAGTTCAGAACACACCTTTGTATTCCCTGATGACTCTCTCTCTTaGTGCAGCGCTGACTGCTTC +
Preference number: 4 (lower is better)
Translates to: TQRYNLSDDSSEHTFVFPDDSLS*CSADCF
Trigger: GAAGCAGTCAGCGCTGCACCAAGAGAGAGAGTCATC...AGGGAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCTTGGTGTTTATGACATaGCTTATGCCATACCGGGGA +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTLVFMT*LMPYRG
Trigger: TCCCCGGTATGGCATAAGCCATGTCATAAACACCAA...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATATTGTCATCTCCTTCTaGAGGAGGCAGGGTTGTGAG +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNIVISF*RRQGCE
Trigger: CTCACAACCCTGCCTCCTCCAGAAGGAGATGACAAT...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATGATAGCCTTCATGAGTaGCCAAGAACATGCGGGAGA +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNDSLHE*PRTCGR
Trigger: TCTCCCGCATGTTCTTGGCCACTCATGAAGGCTATC...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGCCACATACCATCTTTaGCTGTCCTTGCGAAAGGCA +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVATYHL*LSLRKA
Trigger: TGCCTTTCGCAAGGACAGCCAAAGATGGTATGTGGC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGGGATGACATTCGCTTaGCCAAATGGTAGTCACAAA +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILGMTFA*PNGSHK
Trigger: TTTGTGACTACCATTTGGCCAAGCGAATGTCATCCC...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTACTTGGTCCTGTGGCTaGAAAGCTTTGGAATCTTCA +
Preference number: 4 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILTWSCG*KALESS
Trigger: TGAAGATTCCAAAGCTTTCCAGCCACAGGACCAAGT...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112149.9
3UTR CAA 72 bp TGGCCATTGATTATGACCTCTTCGGAAAAGCGCACTTaGACTGGATTGGACTTCAATCTTGCCTTTTTAGCA +
Preference number: 4 (lower is better)
Translates to: WPLIMTSSEKRT*TGLDFNLAFLA
Trigger: TGCTAAAAAGGCAAGATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCGAAGAGGTCATAATCAATGGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 72 bp GCAACTGGATCTCTTCTTAACAGGTCAATGGGATCTTaGGGAACAAAACTGATTCGGAAAAGACACCTCATC +
Preference number: 4 (lower is better)
Translates to: ATGSLLNRSMGS*GTKLIRKRHLI
Trigger: GATGAGGTGTCTTTTCCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCTGTTAAGAAGAGATCCAGTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 72 bp TTGACATGGCTGAAGTCAGCTAAAAGAGCCACCAGATaGGTTTTGGTGTTTATGACATGGCTTATGCCATAC +
Preference number: 4 (lower is better)
Translates to: LTWLKSAKRATR*VLVFMTWLMPY
Trigger: GTATGGCATAAGCCATGTCATAAACACCAAAACCAATCTGGTGGCTCTTTTAGCTGACTTCAGCCATGTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR TCA 90 bp ATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAAGTTTTGATTTGCTTTaGCAAGGTGGGAGAGTGCTT +
Preference number: 4 (lower is better)
Translates to: IRIQYASKTNILHTVSWASFDLL*QGGRVL
Trigger: AAGCACTCTCCCACCTTGTCAAAGCAAATCAAAACT...TGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACCATTTCCATGTGGTCTaGGTGAAGGATCTGCTTGGA +
Preference number: 4 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHHFHVV*VKDLLG
Trigger: TCCAAGCAGATCCTTCACTCAGACCACATGGAAATG...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACGGCTCTCTCCTCTGGTaGAATATATCTCCCTCCTTT +
Preference number: 4 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHGSLLW*NISPSF
Trigger: AAAGGAGGGAGATATATTTCACCAGAGGAGAGAGCC...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTGCAATCCGTCATCAAATGGGATTaGCTGTGTCATGTGATTGAT +
Preference number: 4 (lower is better)
Translates to: THRAFHMCLPLGHLFLQSVIKWD*LCHVID
Trigger: ATCAATCACATGACACAGGCAATCCCATTTGATGAC...GGATTGCAAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGTTGAGGGAGATTTTCTaGGTCTGTTTGGTGGTGACA +
Preference number: 4 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRLREIF*VCLVVT
Trigger: TGTCACCACCAAACAGACGCAGAAAATCTCCCTCAA...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTTGTCGATATATAAGTaGCGGTGCTCTTTGGGACAC +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSLSIYK*RCSLGH
Trigger: GTGTCCCAAAGAGCACCGGCACTTATATATCGACAA...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTACACATCACCTATGTTTaGATATACAGAATTTGCCAC +
Preference number: 4 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLHITYV*IYRICH
Trigger: GTGGCAAATTCTGTATATGCAAACATAGGTGATGTG...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTGACTTTCATGGCTGGTaGTTCCATTCCACTTTTCTC +
Preference number: 4 (lower is better)
Translates to: HTIRIQYASKTNILHTVSDFHGW*FHSTFL
Trigger: GAGAAAAGTGGAATGGAAGCACCAGCCATGAAAGTC...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTATCTATATATGTGATTTaGGCTTCTTGTTCGCCTTCA +
Preference number: 4 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLSIYVI*ASCSPS
Trigger: TGAAGGCGAACAAGAAGCCCAAATCACATATATAGA...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGGAATTTGCCACAAACTaGATGCTGTCTGTGTCTGGA +
Preference number: 4 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIREFATN*MLSVSG
Trigger: TCCAGACACAGACAGCATCCAGTTTGTGGCAAATTC...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACAGTGAAGGATCTGCTTaGAAGGCACAACTTTGGGTG +
Preference number: 4 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHSEGSA*KAQLWV
Trigger: CACCCAAAGTTGTGCCTTCCAAGCAGATCCTTCACT...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAATGCCAGCTTTGCCTTTaGTGTCCTCCTCTATCTCTG +
Preference number: 4 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKCQLCL*CPPLSL
Trigger: CAGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCA...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGGTTATCTAAGTCTTTaGCTGAGGCTACACAGGCCA +
Preference number: 4 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQGYLSL*LRLHRP
Trigger: TGGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACC...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGAAAGCTTAGTGGCATaGTCACAAGAGGGAGAGTCA +
Preference number: 4 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQESLVA*SQEGES
Trigger: TGACTCTCCCTCTTGTGACCATGCCACTAAGCTTTC...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAATCTTGGGCAGTCGATaGCATCCATCTCTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVILGSR*HPSLKV
Trigger: CACTTTGAGAGATGGATGCCATCGACTGCCCAAGAT...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATATCTTGGGCAGTCGATaGCATCCATCTCTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNILGSR*HPSLKV
Trigger: CACTTTGAGAGATGGATGCCATCGACTGCCCAAGAT...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
3UTR CAA 72 bp AGTGAATTGTCTTTAACAGTTTCCGACACTTGGCCATaGATTATGACCTCTTCGGAAAAGCGCACTTTGACT +
Preference number: 4 (lower is better)
Translates to: SELSLTVSDTWP*IMTSSEKRTLT
Trigger: AGTCAAAGTGCGCTTTTCCGAAGAGGTCATAATCAATGGCCAAGTGTCGGAAACTGTTAAAGACAATTCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
3UTR CAA 72 bp TTCTCAATGTATTTGAGGGAGATTTTCTGCGTCTGTTaGGTGGTGACAGTAGCAATGTACATTTGTAACGCG +
Preference number: 4 (lower is better)
Translates to: FSMYLREIFCVC*VVTVAMYICNA
Trigger: CGCGTTACAAATGTACATTGCTACTGTCACCACCAAACAGACGCAGAAAATCTCCCTCAAATACATTGAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS-3UTR TCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAGCACTAATGTTGCCTTaGATACACGGCCCCCATATA +
Preference number: 4 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKALMLP*IHGPHI
Trigger: TATATGGGGGCCGTGTATTCAAGGCAACATTAGTGC...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAATATATAAGTGCCGGTaGTCTTTGGGACACAAGGTG +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVIYKCR*SLGHKV
Trigger: CACCTTGTGTCCCAAAGAGCACCGGCACTTATATAT...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGAATTTGCCACAAACTaGATGCTGTCTGTGTCTGGA +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCEFATN*MLSVSG
Trigger: TCCAGACACAGACAGCATCCAGTTTGTGGCAAATTC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTGGGATGACATTCGCTTaGCCAAATGGTAGTCACAAA +
Preference number: 4 (lower is better)
Translates to: TVCIENKHPPHSILGNMFGMTFA*PNGSHK
Trigger: TTTGTGACTACCATTTGGCCAAGCGAATGTCATCCC...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATCTTTGGGAACAAAACTaGTTCGGAAAAGACACCTCA +
Preference number: 4 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNLWEQN*FGKDTS
Trigger: TGAGGTGTCTTTTCCGAATCAGTTTTGTTCCCAAAG...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAAGTTTTGATTTGCTTTaGCAAGGTGGGAGAGTGCTT +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVSFDLL*QGGRVL
Trigger: AAGCACTCTCCCACCTTGTCAAAGCAAATCAAAACT...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR TCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAACAGGAATATGCTACTaGCCCCATATGCAGTTTGCT +
Preference number: 4 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKTGICY*PHMQFA
Trigger: AGCAAACTGCATATGGGGTCAGTAGCATATTCCTGT...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCCAAGGAGATTATGCTTaGCTTTATTTTCTGATCCTG +
Preference number: 4 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTQGDYA*LYFLIL
Trigger: CAGGATCAGAAAATAAAGGCAAGCATAATCTCCTTG...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAACAGTTTCCGACACTTaGCCATTGATTATGACCTCT +
Preference number: 4 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVTVSDT*PLIMTS
Trigger: AGAGGTCATAATCAATGGCCAAGTGTCGGAAACTGT...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACCCAAAGATATAATTTGAGTGATGACAGTTCAGAACACACCTTTGTATTCCCTGTCATATTTCAGCTCTaGTCCAAATCGCTCCTGAAC +
Preference number: 4 (lower is better)
Translates to: TQRYNLSDDSSEHTFVFPVIFQL*SKSLLN
Trigger: GTTCAGGAGCGATTTGGACCAGAGCTGAAATATGAC...AGGGAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACATAGACAACTTCTCTTaGAGGGTTAAGATGACATCC +
Preference number: 4 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHIDNFS*RVKMTS
Trigger: GGATGTCATCTTAACCCTGCAAGAGAAGTTGTCTAT...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGCACATCACCTATGTTTaGATATACAGAATTTGCCAC +
Preference number: 4 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRHITYV*IYRICH
Trigger: GTGGCAAATTCTGTATATGCAAACATAGGTGATGTG...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAACTCATCTTCATCTTCTaGATCGTCCGTATTTTCTGC +
Preference number: 4 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKLIFIF*IVRIFC
Trigger: GCAGAAAATACGGACGATGCAGAAGATGAAGATGAG...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTTCAATCCTGTTGACATaGCTGAAGTCAGCTAAAAGA +
Preference number: 4 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCSILLT*LKSAKR
Trigger: TCTTTTAGCTGACTTCAGCCATGTCAACAGGATTGA...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACGAATTTTCACTCTTCTaGTGTTCTTCTGAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHEFSLF*CSSERA
Trigger: AGCTCTTTCAGAAGAACAGCAGAAGAGTGAAAATTC...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CCA 90 bp ACCCAAAGATATAATTTGAGTGATGACAGTTCAGAACACACCTTTGTATTCCCTAAAGACTTTCATGGCTaGTGCTTCCATTCCACTTTT +
Preference number: 4 (lower is better)
Translates to: TQRYNLSDDSSEHTFVFPKDFHG*CFHSTF
Trigger: AAAAGTGGAATGGAAGCACCAGCCATGAAAGTCTTT...AGGGAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR GCA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAAATTGGACTTCAATCTTaGCTTTTTAGCAGCACTGAT +
Preference number: 4 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKIGLQS*LFSSTD
Trigger: ATCAGTGCTGCTAAAAAGGCAAGATTGAAGTCCAAT...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
3UTR CAA 72 bp AGTTTGCCTTCTTTTGTTTTGACCCAAAGATATAATTaGAGTGATGACAGTTCAGAACACACCTTTGTATTC +
Preference number: 4 (lower is better)
Translates to: SLPSFVLTQRYN*SDDSSEHTFVF
Trigger: GAATACAAAGGTGTGTTCTGAACTGTCATCACTCAAATTATATCTTTGGGTCAAAACAAAAGAAGGCAAACT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112147.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGGCCAGCCCGAAGACTaGGTCCTGTGGCTGGAAAGC +
Preference number: 5 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLGQPED*VLWLES
Trigger: GCTTTCCAGCCACAGGACCAAGTCTTCGGGCTGGCC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112149.9
CDS-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGCCTCATGGAAGGACGTaGCCTGGCTCTGAGTGTCCT +
Preference number: 5 (lower is better)
Translates to: ALVALTRQSSSLASFWASPHGRT*PGSECP
Trigger: AGGACACTCAGAGCCAGGCAACGTCCTTCCATGAGG...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCAGTCCCTTCTCACACTaGCCCTCTGCACTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFSPFSH*PSALVG
Trigger: GCCCACCAGTGCAGAGGGCAAGTGTGAGAAGGGACT...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCAGTCCCTTCTCACACTaGCCCTCTGCACTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: LVSFFPRGSSARLSELTSSPFSH*PSALVG
Trigger: GCCCACCAGTGCAGAGGGCAAGTGTGAGAAGGGACT...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAAGTGCCGGTGCTCTTaGGGACACAAGGTGCTGTCT +
Preference number: 5 (lower is better)
Translates to: ALVALTRQSSSLASFWASKCRCS*GHKVLS
Trigger: AGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTT...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGGGCCATGGGAGGACTTaGGAGGCAAGCCCACTGAGG +
Preference number: 5 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMGHGRT*EASPLR
Trigger: CCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCC...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTGACACAGTGCCAGCTTaGCCTTTGGTGTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLDTVPA*PLVSSS
Trigger: AGAGGAGGACACCAAAGGCAAAGCTGGCACTGTGTC...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCGGCCACATACCATCTTaGGCTGTCCTTGCGAAAGGC +
Preference number: 5 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGGHIPS*AVLAKG
Trigger: GCCTTTCGCAAGGACAGCCAAAGATGGTATGTGGCC...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGCAAAGGCGGGCCACATaGTCTTCAGCCTCAGAAAGC +
Preference number: 5 (lower is better)
Translates to: ALVALTRQSSSLASFWASQRRAT*SSASES
Trigger: GCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTG...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS GCA 90 bp GCAGGATGGGATCAGCTTCAGGATGTGGAGACCAAGCTGAAGGCATaGCTCCTTGTCTCTCCTTCCCAGGCTCTGTCAAAGCTGTGGTTT +
Preference number: 5 (lower is better)
Translates to: AGWDQLQDVETKLKA*LLVSPSQALSKLWF
Trigger: AAACCACAGCTTTGACAGAGCCTGGGAAGGAGAGACAAGGAGGCATGCCTTCAGCTTGGTCTCCACATCCTGAAGCTGATCCCATCCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112146.9
ENSMUST00000238709.2
CDS-3UTR CAA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCAAGTGCCGGTGCTCTTaGGGACACAAGGTGCTGTCT +
Preference number: 5 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFKCRCS*GHKVLS
Trigger: AGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTT...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCCTGCTGCCTTGTTCTTaGTCCTCATGGAAGGACGTT +
Preference number: 5 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGLLPCS*SSWKDV
Trigger: AACGTCCTTCCATGAGGACAAAGAACAAGGCAGCAG...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTGACACAGTGCCAGCTTaGCCTTTGGTGTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: LSWKVSKPTGPERILLLCDTVPA*PLVSSS
Trigger: AGAGGAGGACACCAAAGGCAAAGCTGGCACTGTGTC...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGGGGTTATCTAAGTCTTaGGCTGAGGCTACACAGGCC +
Preference number: 5 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGGLSKS*AEATQA
Trigger: GGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACCC...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCTTATCCTCTGCTGCCTaGCCAAAGCCCCAAGGAATG +
Preference number: 5 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLLSSAA*PKPQGM
Trigger: CATTCCTTGGGGCTTTGGCAAGGCAGCAGAGGATAA...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS GCA 90 bp CGAAGACTTGGTCCTGTGGCGGCAAACATGTTCTCTGTTATCCTCTaGTGCCTTGCCAAAGCCCCAAGGAATGGAGAAGGTCGACCAATT +
Preference number: 5 (lower is better)
Translates to: RRLGPVAANMFSVIL*CLAKAPRNGEGRPI
Trigger: AATTGGTCGACCTTCTCCATTCCTTGGGGCTTTGGCAAGGCAGCAGAGGATAACAGAGAACATGTTTGCCGCCACAGGACCAAGTCTTCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238709.2
CDS-3UTR CAA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGCACGTCCATCTCGGTTaGTCATCATCTCCCATCCAT +
Preference number: 5 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWHVHLG*SSSPIH
Trigger: ATGGATGGGAGATGATGACAAACCGAGATGGACGTG...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
CDS-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCGAAGAGTTAGTCTCATaGCCCGAGTCTGATGAAGAC +
Preference number: 5 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGEELVS*PESDED
Trigger: GTCTTCATCAGACTCGGGCAATGAGACTAACTCTTC...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTCTCCCTCAGGAAGCTaGCTTTTCCTTTTGCTGGTA +
Preference number: 5 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGSPSGS*LFLLLV
Trigger: TACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAGA...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCGGTGTGGATTGTCTCTaGAAGACACAGTGCCAGCTT +
Preference number: 5 (lower is better)
Translates to: LVSFFPRGSSARLSELTSGVDCL*KTQCQL
Trigger: AAGCTGGCACTGTGTCTTCAAGAGACAATCCACACC...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCGGTGTGGATTGTCTCTaGAAGACACAGTGCCAGCTT +
Preference number: 5 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFGVDCL*KTQCQL
Trigger: AAGCTGGCACTGTGTCTTCAAGAGACAATCCACACC...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGTGCTGAGGTGTGGATaGTCTCTTGAAGACACAGTG +
Preference number: 5 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWVLRCG*SLEDTV
Trigger: CACTGTGTCTTCAAGAGACAATCCACACCTCAGCAC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGGGCCACATACCATCTTaGGCTGTCCTTGCGAAAGGC +
Preference number: 5 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMGHIPS*AVLAKG
Trigger: GCCTTTCGCAAGGACAGCCAAAGATGGTATGTGGCC...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TGCTTCTGCAGTCCAACAACCAGGGATGAGTTACCTGGTTCCGACATGGCTTGGGTGGTTTCCTTAATCTaGGGCAGTCGATGGCATCCA +
Preference number: 5 (lower is better)
Translates to: CFCSPTTRDELPGSDMAWVVSLI*GSRWHP
Trigger: TGGATGCCATCGACTGCCCAAGATTAAGGAAACCAC...CCAAGCCATGTCGGAACCAGGTAACTCATCCCTGGTTGTTGGACTGCAGAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCGTGGTTTCCTTAATCTaGGGCAGTCGATGGCATCCA +
Preference number: 5 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLVVSLI*GSRWHP
Trigger: TGGATGCCATCGACTGCCCAAGATTAAGGAAACCAC...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS CCA 90 bp CCAGGCTCTGTCAAAGCTGTGGTTTCCTTAATCTTGGGCAGTCGATaGCATCCATCTCTCAAAGTGCCAAACAGGGGGTCGGCATTAATG +
Preference number: 5 (lower is better)
Translates to: PGSVKAVVSLILGSR*HPSLKVPNRGSALM
Trigger: CATTAATGCCGACCCCCTGTTTGGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGCTTTGACAGAGCCTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112146.9
ENSMUST00000238709.2
CDS-3UTR CAA 90 bp CTGGGTCTTCTGTCCAGACCTTCAGAGCTGTCCCTCTGGACAGTTCTTCCCCTTTGTGATTTGGGCTTCTaGTTCGCCTTCACCAATGAA +
Preference number: 5 (lower is better)
Translates to: LGLLSRPSELSLWTVLPLCDLGF*FAFTNE
Trigger: TTCATTGGTGAAGGCGAACAAGAAGCCCAAATCACA...AAGGGGAAGAACTGTCCAGAGGGACAGCTCTGAAGGTCTGGACAGAAGACCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTCTGCTGCCTTGTTCTTaGTCCTCATGGAAGGACGTT +
Preference number: 5 (lower is better)
Translates to: LSWKVSKPTGPERILLLCLLPCS*SSWKDV
Trigger: AACGTCCTTCCATGAGGACAAAGAACAAGGCAGCAG...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGGCCATGGGAGGACTTaGGAGGCAAGCCCACTGAGG +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTGHGRT*EASPLR
Trigger: CCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGGGCCAGCCCGAAGACTaGGTCCTGTGGCAGCTGTGT +
Preference number: 5 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRGQPED*VLWQLC
Trigger: ACACAGCTGCCACAGGACCAAGTCTTCGGGCTGGCC...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000112145.3
CDS-3UTR CAA 90 bp TGGCTTGGGTTATCTGTGGTCGATAGAGACAAGAGACCTGAAGGGTGGCCTCTCATTTTCTGCGTCTGTTaGGTGGTGACAGTAGCAATG +
Preference number: 5 (lower is better)
Translates to: WLGLSVVDRDKRPEGWPLIFCVC*VVTVAM
Trigger: CATTGCTACTGTCACCACCAAACAGACGCAGAAAAT...GAGAGGCCACCCTTCAGGTCTCTTGTCTCTATCGACCACAGATAACCCAAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAGCCACCAGATTGGTTTaGGTGTTTATGACATGGCTT +
Preference number: 5 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAATRLV*VFMTWL
Trigger: AAGCCATGTCATAAACACCAAAACCAATCTGGTGGC...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGGCCACCAGATTGGTTTaGGTGTTTATGACATGGCTT +
Preference number: 5 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGATRLV*VFMTWL
Trigger: AAGCCATGTCATAAACACCAAAACCAATCTGGTGGC...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGCTGCTGCCTTGTTCTTaGTCCTCATGGAAGGACGTT +
Preference number: 5 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMLLPCS*SSWKDV
Trigger: AACGTCCTTCCATGAGGACAAAGAACAAGGCAGCAG...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCAGTCCCTTCTCACACTaGCCCTCTGCACTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTSPFSH*PSALVG
Trigger: GCCCACCAGTGCAGAGGGCAAGTGTGAGAAGGGACT...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCAGCTTGCTTTTCCTTTaGCTGGTACAGGAATATGCT +
Preference number: 5 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGSLLFL*LVQEYA
Trigger: AGCATATTCCTGTACCAGCAAAAGGAAAAGCAAGCT...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCTGCTGCTATGTTCTCCCTCAGGAAGCTaGCTTTTCCTTTTGCTGGTA +
Preference number: 5 (lower is better)
Translates to: LSWKVSKPTGPERILLLCSPSGS*LFLLLV
Trigger: TACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAGA...ACATAGCAGCAGAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTGACACAGTGCCAGCTTaGCCTTTGGTGTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: SYRHFPTVWTQWITVACTDTVPA*PLVSSS
Trigger: AGAGGAGGACACCAAAGGCAAAGCTGGCACTGTGTC...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCACATCTTTGGCTGTCCTaGCGAAAGGCAGTTCTCTCT +
Preference number: 5 (lower is better)
Translates to: RAAMVVECRIDSPILGSPHLWLS*RKAVLS
Trigger: AGAGAGAACTGCCTTTCGCAAGGACAGCCAAAGATG...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCCAAAGGCGGGCCACATaGTCTTCAGCCTCAGAAAGC +
Preference number: 5 (lower is better)
Translates to: FRAFILAIRASKARLLKSQRRAT*SSASES
Trigger: GCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTG...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTCAAAGGCGGGCCACATaGTCTTCAGCCTCAGAAAGC +
Preference number: 5 (lower is better)
Translates to: SYRHFPTVWTQWITVACTQRRAT*SSASES
Trigger: GCTTTCTGAGGCTGAAGACAATGTGGCCCGCCTTTG...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCATCCGACACTTGGCCATaGATTATGACCTCTTCGGAA +
Preference number: 5 (lower is better)
Translates to: RAAMVVECRIDSPILGSPSDTWP*IMTSSE
Trigger: TTCCGAAGAGGTCATAATCAATGGCCAAGTGTCGGA...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTGCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTCAAAACGAAAGGATTaGGTCTGTCCGTTTTCCAAA +
Preference number: 5 (lower is better)
Translates to: PCLGCPHKAEQLIGIILGSKRKD*VCPFSK
Trigger: TTTGGAAAACGGACAGACCAAATCCTTTCGTTTTGA...GCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp AGAGCGGCCATGGTGGTTGAATGTCGCATCGATAGTCCAATATTAGGATCCCCATGCACTAATGTTGCCTaGAATACACGGCCCCCATAT +
Preference number: 5 (lower is better)
Translates to: RAAMVVECRIDSPILGSPCTNVA*NTRPPY
Trigger: ATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCA...TGGGGATCCTAATATTGGACTATCGATGCGACATTCAACCACCATGGCCGCTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGGTGCCTGCGTTTTTCTaGTTGGCCATGTTAAATATT +
Preference number: 5 (lower is better)
Translates to: ALVALTRQSSSLASFWASVPAFF*LAMLNI
Trigger: AATATTTAACATGGCCAACAAGAAAAACGCAGGCAC...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGTGTGATTTGGGCTTCTaGTTCGCCTTCACCAATGAA +
Preference number: 5 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWCDLGF*FAFTNE
Trigger: TTCATTGGTGAAGGCGAACAAGAAGCCCAAATCACA...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGATCTATATATGTGATTaGGGCTTCTTGTTCGCCTTC +
Preference number: 5 (lower is better)
Translates to: ALVALTRQSSSLASFWASIYICD*GFLFAF
Trigger: GAAGGCGAACAAGAAGCCCAAATCACATATATAGAT...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCCTTGGTTGCCCTCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGTTGCATATACAGAATTaGCCACAAACTGGATGCTGT +
Preference number: 5 (lower is better)
Translates to: ALVALTRQSSSLASFWASLHIQN*PQTGCC
Trigger: ACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAA...CGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGAGGGCAACCAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGCCATGGGAGGACTTaGGAGGCAAGCCCACTGAGG +
Preference number: 5 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCGHGRT*EASPLR
Trigger: CCTCAGTGGGCTTGCCTCCAAAGTCCTCCCATGGCC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAAGCTTGCTTTTCCTTTaGCTGGTACAGGAATATGCT +
Preference number: 5 (lower is better)
Translates to: QGRAAHWHHFGLRETHRASLLFL*LVQEYA
Trigger: AGCATATTCCTGTACCAGCAAAAGGAAAAGCAAGCT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGTCTCCCTCAGGAAGCTaGCTTTTCCTTTTGCTGGTA +
Preference number: 5 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLSPSGS*LFLLLV
Trigger: TACCAGCAAAAGGAAAAGCAAGCTTCCTGAGGGAGA...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGGTGCCAGCTTTGCCTTaGGTGTCCTCCTCTATCTCT +
Preference number: 5 (lower is better)
Translates to: FAFRAFILAIRASKARLLVPALP*VSSSIS
Trigger: AGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCAC...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTCACGTCCATCTCGGTTaGTCATCATCTCCCATCCAT +
Preference number: 5 (lower is better)
Translates to: SYRHFPTVWTQWITVACTHVHLG*SSSPIH
Trigger: ATGGATGGGAGATGATGACAAACCGAGATGGACGTG...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
CDS-3UTR CAA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGTCGGAAAAGCGCACTTaGACTGGATTGGACTTCAAT +
Preference number: 5 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMSEKRT*TGLDFN
Trigger: ATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCGA...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ATCTCCAGTTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGATTTTCTGCGTCTGTTaGGTGGTGACAGTAGCAATG +
Preference number: 5 (lower is better)
Translates to: ISSCCFPASVRVGSYTPLIFCVC*VVTVAM
Trigger: CATTGCTACTGTCACCACCAAACAGACGCAGAAAAT...CAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAACTGGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCAAAAAGAGCCACCAGATaGGTTTTGGTGTTTATGACA +
Preference number: 5 (lower is better)
Translates to: QGRAAHWHHFGLRETHRAKRATR*VLVFMT
Trigger: TGTCATAAACACCAAAACCAATCTGGTGGCTCTTTT...TGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CACCAGCTCACAGCCTCTCCGAATGCCTGGATTCCTTGGGAGAAATCATTAGGGAAAAGAGCCACCAGATaGGTTTTGGTGTTTATGACA +
Preference number: 5 (lower is better)
Translates to: HQLTASPNAWIPWEKSLGKRATR*VLVFMT
Trigger: TGTCATAAACACCAAAACCAATCTGGTGGCTCTTTT...CCCTAATGATTTCTCCCAAGGAATCCAGGCATTCGGAGAGGCTGTGAGCTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CACCCTTGGTTCTCTCTTGGAAGGTCTCCAAACCTACGGGTCCTGAGAGGATTCGTGCCTGCGTTTTTCTaGTTGGCCATGTTAAATATT +
Preference number: 5 (lower is better)
Translates to: HPWFSLGRSPNLRVLRGFVPAFF*LAMLNI
Trigger: AATATTTAACATGGCCAACAAGAAAAACGCAGGCAC...GAATCCTCTCAGGACCCGTAGGTTTGGAGACCTTCCAAGAGAGAACCAAGGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGGTGAGCTTCTTCCCCAGAGGGAGTTCTGCTCGTCTTTCTGAACTGACCTCCGTGCCTGCGTTTTTCTaGTTGGCCATGTTAAATATT +
Preference number: 5 (lower is better)
Translates to: LVSFFPRGSSARLSELTSVPAFF*LAMLNI
Trigger: AATATTTAACATGGCCAACAAGAAAAACGCAGGCAC...GGAGGTCAGTTCAGAAAGACGAGCAGAACTCCCTCTGGGGAAGAAGCTCACCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGCCTCATGGAAGGACGTaGCCTGGCTCTGAGTGTCCT +
Preference number: 5 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRPHGRT*PGSECP
Trigger: AGGACACTCAGAGCCAGGCAACGTCCTTCCATGAGG...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAGTGCCAGCTTTGCCTTaGGTGTCCTCCTCTATCTCT +
Preference number: 5 (lower is better)
Translates to: PLSLYETWGTFCETFPQRVPALP*VSSSIS
Trigger: AGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCAC...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGGTGCTGAGGTGTGGATaGTCTCTTGAAGACACAGTG +
Preference number: 5 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKVLRCG*SLEDTV
Trigger: CACTGTGTCTTCAAGAGACAATCCACACCTCAGCAC...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGAAGTCCTCCGACACTTGGCCATaGATTATGACCTCTTCGGAA +
Preference number: 5 (lower is better)
Translates to: FRAFILAIRASKARLLKSSDTWP*IMTSSE
Trigger: TTCCGAAGAGGTCATAATCAATGGCCAAGTGTCGGA...GGACTTCAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGTCAAAACGAAAGGATTaGGTCTGTCCGTTTTCCAAA +
Preference number: 5 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRSKRKD*VCPFSK
Trigger: TTTGGAAAACGGACAGACCAAATCCTTTCGTTTTGA...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTATGCACTAATGTTGCCTaGAATACACGGCCCCCATAT +
Preference number: 5 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLCTNVA*NTRPPY
Trigger: ATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCA...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCACAAGGCAGAGCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGATCTATATATGTGATTaGGGCTTCTTGTTCGCCTTC +
Preference number: 5 (lower is better)
Translates to: SQGRAAHWHHFGLRETHRIYICD*GFLFAF
Trigger: GAAGGCGAACAAGAAGCCCAAATCACATATATAGAT...CCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGCTCTGCCTTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTCGGCCATTGCCATTTTCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATCTATATATGTGATTaGGGCTTCTTGTTCGCCTTC +
Preference number: 5 (lower is better)
Translates to: SRPLPFSYRHFPTVWTQWIYICD*GFLFAF
Trigger: GAAGGCGAACAAGAAGCCCAAATCACATATATAGAT...CCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGAAAATGGCAATGGCCGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGCCTCATGGAAGGACGTaGCCTGGCTCTGAGTGTCCT +
Preference number: 5 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQPHGRT*PGSECP
Trigger: AGGACACTCAGAGCCAGGCAACGTCCTTCCATGAGG...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGTGCCAGCTTTGCCTTaGGTGTCCTCCTCTATCTCT +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTVPALP*VSSSIS
Trigger: AGAGATAGAGGAGGACACCAAAGGCAAAGCTGGCAC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGCGCACTTTGACTGGATaGGACTTCAATCTTGCCTTT +
Preference number: 5 (lower is better)
Translates to: FAFRAFILAIRASKARLLRTLTG*DFNLAF
Trigger: AAAGGCAAGATTGAAGTCCAATCCAGTCAAAGTGCG...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGCGCACTTTGACTGGATaGGACTTCAATCTTGCCTTT +
Preference number: 5 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKRTLTG*DFNLAF
Trigger: AAAGGCAAGATTGAAGTCCAATCCAGTCAAAGTGCG...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTATCGGAAAAGCGCACTTaGACTGGATTGGACTTCAAT +
Preference number: 5 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLSEKRT*TGLDFN
Trigger: ATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCGA...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGTCAAAACGAAAGGATTaGGTCTGTCCGTTTTCCAAA +
Preference number: 5 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMSKRKD*VCPFSK
Trigger: TTTGGAAAACGGACAGACCAAATCCTTTCGTTTTGA...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCCTACAGGCACTTCCCAACTGTCTGGACTCAATGGATAACAGTTGCTTGTACTAGGTCAATGGGATCTTaGGGAACAAAACTGATTCGG +
Preference number: 5 (lower is better)
Translates to: SYRHFPTVWTQWITVACTRSMGS*GTKLIR
Trigger: CCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCT...AGTACAAGCAACTGTTATCCATTGAGTCCAGACAGTTGGGAAGTGCCTGTAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGCATGCAAGAGGTCAATGGGATCTTaGGGAACAAAACTGATTCGG +
Preference number: 5 (lower is better)
Translates to: QFLAAVFQCSRLSLTACKRSMGS*GTKLIR
Trigger: CCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCT...CTTGCATGCGGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGATTTTCTGCGTCTGTTaGGTGGTGACAGTAGCAATG +
Preference number: 5 (lower is better)
Translates to: FAFRAFILAIRASKARLLIFCVC*VVTVAM
Trigger: CATTGCTACTGTCACCACCAAACAGACGCAGAAAAT...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTGCCTTTAGGGCATTTATTCTTGCAATCCGGGCATCAAAAGCCAGACTGCTGCGGTGGTACCAAGTTTaGATTTGCTTTGACAAGGTG +
Preference number: 5 (lower is better)
Translates to: FAFRAFILAIRASKARLLRWYQV*ICFDKV
Trigger: CACCTTGTCAAAGCAAATCAAAACTTGGTACCACCG...CAGCAGTCTGGCTTTTGATGCCCGGATTGCAAGAATAAATGCCCTAAAGGCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGATGCACTAATGTTGCCTaGAATACACGGCCCCCATAT +
Preference number: 5 (lower is better)
Translates to: PLSLYETWGTFCETFPQRCTNVA*NTRPPY
Trigger: ATATGGGGGCCGTGTATTCAAGGCAACATTAGTGCA...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGCTGCTTTCCAGCTTCCGTAAGGGTAGGGTCCTATACACCTTTGAGTCTTTAGCCACCAGATTGGTTTaGGTGTTTATGACATGGCTT +
Preference number: 5 (lower is better)
Translates to: LLLSSFRKGRVLYTFESLATRLV*VFMTWL
Trigger: AAGCCATGTCATAAACACCAAAACCAATCTGGTGGC...TAAAGACTCAAAGGTGTATAGGACCCTACCCTTACGGAAGCTGGAAAGCAGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GCAGCTCATTGGCATCATTTTGGGCTTCGAGAAACCCATCGGGCATTCCATATGCCAAGGAGATTATGCTaGCCTTTATTTTCTGATCCT +
Preference number: 5 (lower is better)
Translates to: AAHWHHFGLRETHRAFHMPRRLC*PLFSDP
Trigger: AGGATCAGAAAATAAAGGCAAGCATAATCTCCTTGG...CATATGGAATGCCCGATGGGTTTCTCGAAGCCCAAAATGATGCCAATGAGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGAAGTGCCGGTGCTCTTaGGGACACAAGGTGCTGTCT +
Preference number: 5 (lower is better)
Translates to: YASFQSMHYTQMCSAHNQKCRCS*GHKVLS
Trigger: AGACAGCACCTTGTGTCCCAAAGAGCACCGGCACTT...CTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAGAAGAGTTAGTCTCATaGCCCGAGTCTGATGAAGAC +
Preference number: 5 (lower is better)
Translates to: PLSLYETWGTFCETFPQREELVS*PESDED
Trigger: GTCTTCATCAGACTCGGGCAATGAGACTAACTCTTC...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGTGCTGAGGTGTGGATaGTCTCTTGAAGACACAGTG +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTVLRCG*SLEDTV
Trigger: CACTGTGTCTTCAAGAGACAATCCACACCTCAGCAC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCCATCTTTGGCTGTCCTaGCGAAAGGCAGTTCTCTCT +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTHLWLS*RKAVLS
Trigger: AGAGAGAACTGCCTTTCGCAAGGACAGCCAAAGATG...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTCATCTTTGGCTGTCCTaGCGAAAGGCAGTTCTCTCT +
Preference number: 5 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILHLWLS*RKAVLS
Trigger: AGAGAGAACTGCCTTTCGCAAGGACAGCCAAAGATG...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACGGCCACATACCATCTTaGGCTGTCCTTGCGAAAGGC +
Preference number: 5 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHGHIPS*AVLAKG
Trigger: GCCTTTCGCAAGGACAGCCAAAGATGGTATGTGGCC...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CCTTTGAGTCTTTATGAGACATGGGGGACCTTTTGTGAAACTTTCCCTCAGAGAAGGTCAATGGGATCTTaGGGAACAAAACTGATTCGG +
Preference number: 5 (lower is better)
Translates to: PLSLYETWGTFCETFPQRRSMGS*GTKLIR
Trigger: CCGAATCAGTTTTGTTCCCAAAGATCCCATTGACCT...TCTCTGAGGGAAAGTTTCACAAAAGGTCCCCCATGTCTCATAAAGACTCAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCGAAGAGTTAGTCTCATaGCCCGAGTCTGATGAAGAC +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTEELVS*PESDED
Trigger: GTCTTCATCAGACTCGGGCAATGAGACTAACTCTTC...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTGAAAACAGACCATCATTTCCCTGTATGCTTCTTTTCAGAGTATGCACTACACGGGTTATCTAAGTCTTaGGCTGAGGCTACACAGGCC +
Preference number: 5 (lower is better)
Translates to: LKTDHHFPVCFFSEYALHGLSKS*AEATQA
Trigger: GGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACCC...GTGTAGTGCATACTCTGAAAAGAAGCATACAGGGAAATGATGGTCTGTTTTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CTTTCATTGGTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGGTTATCTAAGTCTTaGGCTGAGGCTACACAGGCC +
Preference number: 5 (lower is better)
Translates to: LSLVTICKSVVLHLLSLCGLSKS*AEATQA
Trigger: GGCCTGTGTAGCCTCAGCCAAAGACTTAGATAACCC...ACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAACCAATGAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp CACACAATCAGGATACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTCCGACACTTGGCCATaGATTATGACCTCTTCGGAA +
Preference number: 5 (lower is better)
Translates to: HTIRIQYASKTNILHTVSSDTWP*IMTSSE
Trigger: TTCCGAAGAGGTCATAATCAATGGCCAAGTGTCGGA...AGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGTATCCTGATTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCTGTGATTTGGGCTTCTaGTTCGCCTTCACCAATGAA +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTCDLGF*FAFTNE
Trigger: TTCATTGGTGAAGGCGAACAAGAAGCCCAAATCACA...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp GTTACAATCTGTAAATCTGTGGTGTTGCATTTGCTGAGTCTCTGTGGAATGAATGGTGTGGATTGTCTCTaGAAGACACAGTGCCAGCTT +
Preference number: 5 (lower is better)
Translates to: VTICKSVVLHLLSLCGMNGVDCL*KTQCQL
Trigger: AAGCTGGCACTGTGTCTTCAAGAGACAATCCACACC...ATTCATTCCACAGAGACTCAGCAAATGCAACACCACAGATTTACAGATTGTAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTAGTGGTTTCCTTAATCTaGGGCAGTCGATGGCATCCA +
Preference number: 5 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVVVSLI*GSRWHP
Trigger: TGGATGCCATCGACTGCCCAAGATTAAGGAAACCAC...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGTCGGAAAAGCGCACTTaGACTGGATTGGACTTCAAT +
Preference number: 5 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRSEKRT*TGLDFN
Trigger: ATTGAAGTCCAATCCAGTCAAAGTGCGCTTTTCCGA...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCGAGAAACCCATCGGGCATTCCATATGTGTTTGCCTTTAGGGCATTTATTCTTAGCTTGCTTTTCCTTTaGCTGGTACAGGAATATGCT +
Preference number: 5 (lower is better)
Translates to: SRNPSGIPYVFAFRAFILSLLFL*LVQEYA
Trigger: AGCATATTCCTGTACCAGCAAAAGGAAAAGCAAGCT...AAGAATAAATGCCCTAAAGGCAAACACATATGGAATGCCCGATGGGTTTCTCGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ACAGTATGCATCGAAAACAAACATCCTCCACACAGTATCTTGGGCAATATGTTTCGGTGGTACCAAGTTTaGATTTGCTTTGACAAGGTG +
Preference number: 5 (lower is better)
Translates to: TVCIENKHPPHSILGNMFRWYQV*ICFDKV
Trigger: CACCTTGTCAAAGCAAATCAAAACTTGGTACCACCG...AAACATATTGCCCAAGATACTGTGTGGAGGATGTTTGTTTTCGATGCATACTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TCTTTGCTACAATTTCTTGCCGCTGTGTTTCAGTGTTCACGACTTTCACTAACCTTGCATATACAGAATTaGCCACAAACTGGATGCTGT +
Preference number: 5 (lower is better)
Translates to: SLLQFLAAVFQCSRLSLTLHIQN*PQTGCC
Trigger: ACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAA...GGTTAGTGAAAGTCGTGAACACTGAAACACAGCGGCAAGAAATTGTAGCAAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000112145.3
ENSMUST00000112149.9
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ATGCTTCTTTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGCCAAGGAGATTATGCTaGCCTTTATTTTCTGATCCT +
Preference number: 5 (lower is better)
Translates to: MLLFRVCTTHKCVLHTIRPRRLC*PLFSDP
Trigger: AGGATCAGAAAATAAAGGCAAGCATAATCTCCTTGG...CCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAAAGAAGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp TTTCAGAGTATGCACTACACACAAATGTGTTCTGCACACAATCAGGATACAGTATTGCATATACAGAATTaGCCACAAACTGGATGCTGT +
Preference number: 5 (lower is better)
Translates to: FQSMHYTQMCSAHNQDTVLHIQN*PQTGCC
Trigger: ACAGCATCCAGTTTGTGGCAAATTCTGTATATGCAA...TACTGTATCCTGATTGTGTGCAGAACACATTTGTGTGTAGTGCATACTCTGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS-3UTR CAA 90 bp ATAGTAAAGACTTGCTTTAGGAGAACAGAAACTTACTGGAGTAGTCACAGGAAACCAAGGAGATTATGCTaGCCTTTATTTTCTGATCCT +
Preference number: 5 (lower is better)
Translates to: IVKTCFRRTETYWSSHRKPRRLC*PLFSDP
Trigger: AGGATCAGAAAATAAAGGCAAGCATAATCTCCTTGG...TTTCCTGTGACTACTCCAGTAAGTTTCTGTTCTCCTAAAGCAAGTCTTTACTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112145.3
ENSMUST00000238211.2
CDS CAA 72 bp CCCCAGGTTCCTGAGGGAGGTGGCCAGCCCGAAGACTaGGTCCTGTGGCGGCAAACATGTTCTCTGTTATCC +
Preference number: 6 (lower is better)
Translates to: PQVPEGGGQPED*VLWRQTCSLLS
Trigger: GGATAACAGAGAACATGTTTGCCGCCACAGGACCAAGTCTTCGGGCTGGCCACCTCCCTCAGGAACCTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238709.2
CDS CCA 72 bp CCCAGGTTCCTGAGGGAGGTGGCCAGCCCGAAGACTTaGTCCTGTGGCGGCAAACATGTTCTCTGTTATCCT +
Preference number: 6 (lower is better)
Translates to: PRFLREVASPKT*SCGGKHVLCYP
Trigger: AGGATAACAGAGAACATGTTTGCCGCCACAGGACCAAGTCTTCGGGCTGGCCACCTCCCTCAGGAACCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238709.2
CDS CAA 72 bp CCCCAGGTTCCTGAGGGAGGTGGCCAGCCCGAAGACTaGGTCCTGTGGCTGGAAAGCTTTGGAATCTTCACA +
Preference number: 6 (lower is better)
Translates to: PQVPEGGGQPED*VLWLESFGIFT
Trigger: TGTGAAGATTCCAAAGCTTTCCAGCCACAGGACCAAGTCTTCGGGCTGGCCACCTCCCTCAGGAACCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000112146.9
ENSMUST00000112149.9
CDS CCA 72 bp CCCAGGTTCCTGAGGGAGGTGGCCAGCCCGAAGACTTaGTCCTGTGGCTGGAAAGCTTTGGAATCTTCACAA +
Preference number: 6 (lower is better)
Translates to: PRFLREVASPKT*SCGWKALESSQ
Trigger: TTGTGAAGATTCCAAAGCTTTCCAGCCACAGGACCAAGTCTTCGGGCTGGCCACCTCCCTCAGGAACCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112146.9
ENSMUST00000112149.9
CDS GCA 72 bp GGTCCTGTGGCGGCAAACATGTTCTCTGTTATCCTCTaGTGCCTTGCCAAAGCCCCAAGGAATGGAGAAGGT +
Preference number: 6 (lower is better)
Translates to: GPVAANMFSVIL*CLAKAPRNGEG
Trigger: ACCTTCTCCATTCCTTGGGGCTTTGGCAAGGCAGCAGAGGATAACAGAGAACATGTTTGCCGCCACAGGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238709.2
CDS GCA 72 bp AGCAGAGTGCCGGCAAACATGTTCTCTGTTATCCTCTaGTGCCTTGCCAAAGCCCCAAGGAATGGAGAAGGT +
Preference number: 6 (lower is better)
Translates to: SRVPANMFSVIL*CLAKAPRNGEG
Trigger: ACCTTCTCCATTCCTTGGGGCTTTGGCAAGGCAGCAGAGGATAACAGAGAACATGTTTGCCGGCACTCTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112147.9
CDS CCA 72 bp GTCAAAGCTGTGGTTTCCTTAATCTTGGGCAGTCGATaGCATCCATCTCTCAAAGTGCCAAACAGGGGGTCG +
Preference number: 6 (lower is better)
Translates to: VKAVVSLILGSR*HPSLKVPNRGS
Trigger: CGACCCCCTGTTTGGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGCTTTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000112146.9
ENSMUST00000238709.2
CDS CAA 72 bp TTCCCAGGCTCTGTCAAAGCTGTGGTTTCCTTAATCTaGGGCAGTCGATGGCATCCATCTCTCAAAGTGCCA +
Preference number: 6 (lower is better)
Translates to: FPGSVKAVVSLI*GSRWHPSLKVP
Trigger: TGGCACTTTGAGAGATGGATGCCATCGACTGCCCAAGATTAAGGAAACCACAGCTTTGACAGAGCCTGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000112146.9
ENSMUST00000238709.2