RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FRMD5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027238

Ensembl transcript IDs: ENSMUST00000110592.2, ENSMUST00000110593.9, ENSMUST00000121219.8, ENSMUST00000128428.8, ENSMUST00000131092.8, ENSMUST00000133898.8, ENSMUST00000138157.8, ENSMUST00000145075.8, ENSMUST00000155570.8, ENSMUST00000212518.2

Found 538 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCGGCCTGCCCTaGTGGGTCTCCCGGAACCCACTGGCACCAGTGAGAAAATTGCAG +
Preference number: 1 (lower is better)
Translates to: LARKPFLPAHSPGLP*WVSRNPLAPVRKLQ
Trigger: CTGCAATTTTCTCACTGGTGCCAGTGGGTTCCGGGAGACCCAGCAGGGCAGGCCGGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR CCA 90 bp GCCGGGAGAGCAGCATCAGCTCCAGGCTGTGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGGGGCTGTAGGCCTCATCCGCTATCA +
Preference number: 1 (lower is better)
Translates to: AGRAASAPGCARLQG*AAHCLRGCRPHPLS
Trigger: TGATAGCGGATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGATGCTGCTCTCCCGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR TCA 90 bp TGGCCTCCGACTCCTTCTCCTCCTCAATGCTGCACGTGGCCCCGTTaGTCTGCCGGGAGAGCAGCATCAGCTCCAGGCTGTGCTCGGCTA +
Preference number: 1 (lower is better)
Translates to: WPPTPSPPQCCTWPR*SAGRAASAPGCARL
Trigger: TAGCCGAGCACAGCCTGGAGCTGATGCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAGCATTGAGGAGGAGAAGGAGTCGGAGGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 90 bp TCCGACTCCTTCTCCTCCTCAATGCTGCACGTGGCCCCGTTGATCTaGCGGGAGAGCAGCATCAGCTCCAGGCTGTGCTCGGCTACAGGG +
Preference number: 1 (lower is better)
Translates to: SDSFSSSMLHVAPLI*RESSISSRLCSATG
Trigger: CCCTGTAGCCGAGCACAGCCTGGAGCTGATGCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAGCATTGAGGAGGAGAAGGAGTCGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 90 bp CTGCGGGGCTGTAGGCCTCATCCGCTATCACAGCGACACGTTCATTaGTGTCTGCCCGGCTGCTTCTCACGTGAGGCAGGAAGGTGTCCC +
Preference number: 1 (lower is better)
Translates to: LRGCRPHPLSQRHVH*CLPGCFSREAGRCP
Trigger: GGGACACCTTCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTCGCTGTGATAGCGGATGAGGCCTACAGCCCCGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 90 bp CAGCTCCAGGCTGTGCTCGGCTACAGGGGTGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATCCGCTATCACAGCGACACGTTCATT +
Preference number: 1 (lower is better)
Translates to: QLQAVLGYRGGQHTV*GAVGLIRYHSDTFI
Trigger: AATGAACGTGTCGCTGTGATAGCGGATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 90 bp GCTGTAGGCCTCATCCGCTATCACAGCGACACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTGAGGCAGGAAGGTGTCCCCATGGGA +
Preference number: 1 (lower is better)
Translates to: AVGLIRYHSDTFIAV*PAASHVRQEGVPMG
Trigger: TCCCATGGGGACACCTTCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTCGCTGTGATAGCGGATGAGGCCTACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 90 bp ACAGCTCTTCTTCGTGTCCTGGGGACGCTGCTCAGTCGTGGGCCATaGGTTATAGAAGGACAGCTGCGGCTAGGGACCATCCCTGCTCTG +
Preference number: 1 (lower is better)
Translates to: TALLRVLGTLLSRGP*VIEGQLRLGTIPAL
Trigger: CAGAGCAGGGATGGTCCCTAGCCGCAGCTGTCCTTCTATAACCCATGGCCCACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 90 bp GATGTGCACAGCTCTTCTTCGTGTCCTGGGGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGGACAGCTGCGGCTAGGGACCATCCC +
Preference number: 1 (lower is better)
Translates to: DVHSSSSCPGDAAQS*AMGYRRTAAARDHP
Trigger: GGGATGGTCCCTAGCCGCAGCTGTCCTTCTATAACCCATGGCCCACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAGCTGTGCACATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 90 bp GTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTaGTCCACCCGGCTAGTTATTGGGAGGAGTCATGCCTTCTCAGGT +
Preference number: 1 (lower is better)
Translates to: VPRWVPLLGMGSRVP*STRLVIGRSHAFSG
Trigger: ACCTGAGAAGGCATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR CCA 90 bp GCTCAGTGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATaGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTC +
Preference number: 1 (lower is better)
Translates to: AQWTLSHERTWCVCR*FRDGSHCWEWVAGF
Trigger: GAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCACTGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR GCA 90 bp TCTGTTGGGGCTGCTCCGCTCCACTGTTTTCTGGTCCCAGGAGTGTaGCCTTTGACTGTCCTTTACGTGAGTCCTTGGGCCTCAGATGAC +
Preference number: 1 (lower is better)
Translates to: SVGAAPLHCFLVPGV*PLTVLYVSPWASDD
Trigger: GTCATCTGAGGCCCAAGGACTCACGTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAGAAAACAGTGGAGCGGAGCAGCCCCAACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 90 bp TTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGACTTTGAGTCATaGGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCA +
Preference number: 1 (lower is better)
Translates to: FCWERTLLGSVDFES*EDLVCVPMVPRWVP
Trigger: TGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR TCA 90 bp GGGAGGAGTCATGCCTTCTCAGGTGTCAATGAGCAGGCTCACCACTaGGCGGATTTTGCAGGCAAACCATCGCCTGTTCTTGCTCTGACC +
Preference number: 1 (lower is better)
Translates to: GRSHAFSGVNEQAHH*ADFAGKPSPVLALT
Trigger: GGTCAGAGCAAGAACAGGCGATGGTTTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTCATTGACACCTGAGAAGGCATGACTCCTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR TCA 90 bp CACCCGGCTAGTTATTGGGAGGAGTCATGCCTTCTCAGGTGTCAATaGGCAGGCTCACCACTGAGCGGATTTTGCAGGCAAACCATCGCC +
Preference number: 1 (lower is better)
Translates to: HPASYWEESCLLRCQ*AGSPLSGFCRQTIA
Trigger: GGCGATGGTTTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTCATTGACACCTGAGAAGGCATGACTCCTCCCAATAACTAGCCGGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR TCA 90 bp CCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGACTTTaGGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATG +
Preference number: 1 (lower is better)
Translates to: PFLLLGKNPARLSGL*VMRGLGVCADGSAM
Trigger: CATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR TCA 90 bp ACAAGAAACACACCAGGCAATGGCAGGCTGCCTCTCTCGAGGCTATaGAAGGTCAGAGGCGAGACTACCACTCACTGCATAGACACTGTG +
Preference number: 1 (lower is better)
Translates to: TRNTPGNGRLPLSRL*KVRGETTTHCIDTV
Trigger: CACAGTGTCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAGAGAGGCAGCCTGCCATTGCCTGGTGTGTTTCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 90 bp GAAGCACATGGTGAACGGAGGCTGGGATCTCAGCTGCTTCACCACTaGCTTTGTAAACTCCAACCAATGCCGCTGCTTATCTGGGTCCAC +
Preference number: 1 (lower is better)
Translates to: EAHGERRLGSQLLHH*LCKLQPMPLLIWVH
Trigger: GTGGACCCAGATAAGCAGCGGCATTGGTTGGAGTTTACAAAGTCAGTGGTGAAGCAGCTGAGATCCCAGCCTCCGTTCACCATGTGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR CCA 90 bp AGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTaGCACCACTTTGACACCCCAGAAGCACTAAAAGTCTTGAGGTTC +
Preference number: 1 (lower is better)
Translates to: RSLVTVLWDISDRTL*HHFDTPEALKVLRF
Trigger: GAACCTCAAGACTTTTAGTGCTTCTGGGGTGTCAAAGTGGTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGTATGCTGCTGTaGGGGACGACACTAAGTGCTCTTAGACCTTGTTTCCAGGAGCAG +
Preference number: 1 (lower is better)
Translates to: VCVCVCVCVCTRMLL*GTTLSALRPCFQEQ
Trigger: CTGCTCCTGGAAACAAGGTCTAAGAGCACTTAGTGTCGTCCCTCACAGCAGCATACGTGTACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR GCA 90 bp ACCAGGGTTTGCATCGTACTGCTGGGGACCAGTCTCTCAGCATATTaGAGATTTAGGTTTGTTTTTAGGGAGTGGGAAGCCGGTGGTCTG +
Preference number: 1 (lower is better)
Translates to: TRVCIVLLGTSLSAY*RFRFVFREWEAGGL
Trigger: CAGACCACCGGCTTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTACGATGCAAACCCTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 90 bp ACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTaGGAAGCCGGTGGTCTGAGACACCTCATGTATCCCAGACTGGGA +
Preference number: 1 (lower is better)
Translates to: TSLSAYCRFRFVFRE*EAGGLRHLMYPRLG
Trigger: TCCCAGTCTGGGATACATGAGGTGTCTCAGACCACCGGCTTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 90 bp ATGACACACATCACTGCTGGTTGGTTGTTGGAGCACCCTGCCCATTaGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCT +
Preference number: 1 (lower is better)
Translates to: MTHITAGWLLEHPAH*EMVLGSLHKTAMEA
Trigger: AGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGGCAGGGTGCTCCAACAACCAACCAGCAGTGATGTGTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 90 bp GTCTCCCTGCTGAATGCTGGGACCACGGGTATATGCTACCACACCTaGTTTTGTGTATTGTTTGAAGTCAAATCCAGGGCCTTATACATG +
Preference number: 1 (lower is better)
Translates to: VSLLNAGTTGICYHT*FCVLFEVKSRALYM
Trigger: CATGTATAAGGCCCTGGATTTGACTTCAAACAATACACAAAACCAGGTGTGGTAGCATATACCCGTGGTCCCAGCATTCAGCAGGGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 90 bp CAATGGAAGCTGGCCCTGTGTAGACCAGGGTTTGCATCGTACTGCTaGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTA +
Preference number: 1 (lower is better)
Translates to: QWKLALCRPGFASYC*GPVSQHIADLGLFL
Trigger: TAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTACGATGCAAACCCTGGTCTACACAGGGCCAGCTTCCATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 90 bp AGAGGACAACAGTCTGAGTCTTCAGCTAGTGTCCCATCTACTGGGTaGCACTACTGCAATCATCAGTCTAGTAAAATAAGTGACTTTTAT +
Preference number: 1 (lower is better)
Translates to: RGQQSESSASVPSTG*HYCNHQSSKISDFY
Trigger: ATAAAAGTCACTTATTTTACTAGACTGATGATTGCAGTAGTGTCACCCAGTAGATGGGACACTAGCTGAAGACTCAGACTGTTGTCCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR TCA 90 bp TGGGACCACGGGTATATGCTACCACACCTGGTTTTGTGTATTGTTTaGAGTCAAATCCAGGGCCTTATACATGTTAGAAAAATACTTTAC +
Preference number: 1 (lower is better)
Translates to: WDHGYMLPHLVLCIV*SQIQGLIHVRKILY
Trigger: GTAAAGTATTTTTCTAACATGTATAAGGCCCTGGATTTGACTTCAAACAATACACAAAACCAGGTGTGGTAGCATATACCCGTGGTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CAGGGGTGGGCAGCACACTGTCTGCGGGGCTGTAGGCCTCATCCGCTATCACAGGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 2 (lower is better)
Translates to: QGWAAHCLRGCRPHPLSQVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...CTGTGATAGCGGATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCCACCCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CAA 90 bp CTGGCCTCCGACTCCTTCTCCTCCTCAATGCTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGCATCAGCTCCAGGCTGTGCTCGGCT +
Preference number: 2 (lower is better)
Translates to: LASDSFSSSMLHVAP*ICRESSISSRLCSA
Trigger: AGCCGAGCACAGCCTGGAGCTGATGCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAGCATTGAGGAGGAGAAGGAGTCGGAGGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR GCA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGCGCGATGGGTCCCATTaGTGGGAATGGGTAGCCGGG +
Preference number: 2 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSRRDGSH*WEWVAG
Trigger: CCCGGCTACCCATTCCCAGCAATGGGACCCATCGCG...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR TCA 90 bp CCTTCCTGTCTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCGGCCTGCCCAGGCTCAGTGGACTTTaGGTCATGAGAGGACTTGGT +
Preference number: 2 (lower is better)
Translates to: PSCLARKPFLPAHSPGLPRLSGL*VMRGLG
Trigger: ACCAAGTCCTCTCATGACTCAAAGTCCACTGAGCCT...GGGCAGGCCGGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAGACAGGAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR-3UTR CCA 90 bp GTGGCCCCGTTGATCTGCCGGGAGAGCAGCATCAGCTCCAGGCTGTGCTCGGCTTCCCATTGCTGGGAATaGGTAGCCGGGTTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: VAPLICRESSISSRLCSASHCWE*VAGFLG
Trigger: ACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGA...AGCCGAGCACAGCCTGGAGCTGATGCTGCTCTCCCGGCAGATCAACGGGGCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR CCA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGCCGATGGTTCCGCGATaGGTCCCATTGCTGGGAATG +
Preference number: 2 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSRPMVPR*VPLLGM
Trigger: CATTCCCAGCAATGGGACCCATCGCGGAACCATCGG...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp CACTGGACTCCATTACTTCCTTTGCGACCCGGCCACTGTATCGGAACCGGCTCCGATGGGTCCCATTGCTaGGAATGGGTAGCCGGGTTC +
Preference number: 2 (lower is better)
Translates to: HWTPLLPLRPGHCIGTGSDGSHC*EWVAGF
Trigger: GAACCCGGCTACCCATTCCCAGCAATGGGACCCATC...GGAGCCGGTTCCGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGTCCAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CAA 90 bp CGGCTAGGGACCATCCCTGCTCTGTGTATTTCTGGCGGCTCCCGTTaGATCTTGGCACTGGACTCCATTACTTCCTTTGCGACCCGGCCA +
Preference number: 2 (lower is better)
Translates to: RLGTIPALCISGGSR*ILALDSITSFATRP
Trigger: TGGCCGGGTCGCAAAGGAAGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATACACAGAGCAGGGATGGTCCCTAGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR GCA 90 bp TCTGATCTTCCCGTCTCCCTGCTGAATGCTGGGACCACGGGTATATGCTACCACAGCTCCCTGCGGCTCTaGAGGCTCTCGTGTGACTCA +
Preference number: 2 (lower is better)
Translates to: SDLPVSLLNAGTTGICYHSSLRL*RLSCDS
Trigger: TGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCT...GTGGTAGCATATACCCGTGGTCCCAGCATTCAGCAGGGAGACGGGAAGATCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp TTTGTGAAACCTTCCTGTCTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCGGTAGCCGGGTTCCTTaGTCCACCCGGCTAGTTATT +
Preference number: 2 (lower is better)
Translates to: FVKPSCLARKPFLPAHSPGSRVP*STRLVI
Trigger: AATAACTAGCCGGGTGGACCAAGGAACCCGGCTACC...GGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAGACAGGAAGGTTTCACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR-3UTR CCA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGATCCCTTTCTTCTGCTaGGAAAGAACCCTGCTAGGC +
Preference number: 2 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSRIPFFC*ERTLLG
Trigger: GCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGAT...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR CAA 90 bp GCGACCCGGCCACTGTATCGGAACCGGCTCCCCTTAAAGAACAAATaGCTGCTGGACACTGTGCGGACTTGGCTTGACTTTTCCAGCTTG +
Preference number: 2 (lower is better)
Translates to: ATRPLYRNRLPLKNK*LLDTVRTWLDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCTTTAAGGGGAGCCGGTTCCGATACAGTGGCCGGGTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CAA 90 bp GGGACCATCCCTGCTCTGTGTATTTCTGGCGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACTTCCTTTGCGACCCGGCCACTGTAT +
Preference number: 2 (lower is better)
Translates to: GTIPALCISGGSRLI*ALDSITSFATRPLY
Trigger: ATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATACACAGAGCAGGGATGGTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR GCA 90 bp CCTTCCTGTCTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCGGCCTGCCCACCCCCAAATTATTCTaGATATTGAAGGATGAGAAA +
Preference number: 2 (lower is better)
Translates to: PSCLARKPFLPAHSPGLPTPKLF*ILKDEK
Trigger: TTTCTCATCCTTCAATATGCAGAATAATTTGGGGGT...GGGCAGGCCGGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAGACAGGAAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR-3UTR CCA 90 bp TTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTCCCATTGCTGGGAATaGGTAGCCGGGTTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: LSHERTWCVCRWFRDGSHSHCWE*VAGFLG
Trigger: ACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGA...ATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR TCA 90 bp GTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTAGGCTCAGTGGACTTTaGGTCATGAGAGGACTTGGT +
Preference number: 2 (lower is better)
Translates to: VMRGLGVCADGSAMGPIARLSGL*VMRGLG
Trigger: ACCAAGTCCTCTCATGACTCAAAGTCCACTGAGCCT...AGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR GCA 90 bp TCTGATCTTCCCGTCTCCCTGCTGAATGCTGGGACCACGGGTATATGCTACCACGTGTGTGTACACGTATaGTGCTGTGAGGGACGACAC +
Preference number: 2 (lower is better)
Translates to: SDLPVSLLNAGTTGICYHVCVHV*CCEGRH
Trigger: GTGTCGTCCCTCACAGCAGCATACGTGTACACACAC...GTGGTAGCATATACCCGTGGTCCCAGCATTCAGCAGGGAGACGGGAAGATCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp GTTGCTGAGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAATGTTCCCGGTTTACGCGATGGGTCCCATTaGTGGGAATGGGTAGCCGGG +
Preference number: 2 (lower is better)
Translates to: VAEPFSEEPLKKLNVPGLRDGSH*WEWVAG
Trigger: CCCGGCTACCCATTCCCAGCAATGGGACCCATCGCG...TAAACCGGGAACATTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp GACACGTTCATTGCTGTCTGCCCGGCTGCTTCTCACGTGAGGCAGGAAGGTGTCGTGCTTGCAGGCTTCTaGAGTTGGGGCAAAATATGT +
Preference number: 2 (lower is better)
Translates to: DTFIAVCPAASHVRQEGVVLAGF*SWGKIC
Trigger: ACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCAC...GACACCTTCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR CCA 90 bp TGTCTGCGGGGCTGTAGGCCTCATCCGCTATCACAGCGACACGTTCATTGCTGTGACACTGTGCGGACTTaGCTTGACTTTTCCAGCTTG +
Preference number: 2 (lower is better)
Translates to: CLRGCRPHPLSQRHVHCCDTVRT*LDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTC...ACAGCAATGAACGTGTCGCTGTGATAGCGGATGAGGCCTACAGCCCCGCAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR TCA 90 bp CCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGCTGCATATTGAAGGATaGGAAACATTTGAGTTGCTG +
Preference number: 2 (lower is better)
Translates to: PMVPRWVPLLGMGSRVPWLHIEG*ETFELL
Trigger: CAGCAACTCAAATGTTTCTCATCCTTCAATATGCAG...CCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR GCA 90 bp TATTTCTGGCGGCTCCCGTTTGATCTTGGCACTGGACTCCATTACTTCCTTTGCAGGACTTGGTGTGTGTaGCGATGGTTCCGCGATGGG +
Preference number: 2 (lower is better)
Translates to: YFWRLPFDLGTGLHYFLCRTWCV*RWFRDG
Trigger: CCCATCGCGGAACCATCGGCACACACACCAAGTCCT...GCAAAGGAAGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR CCA 90 bp GACTACCACTCACTGCATAGACACTGTGTTCTACAGACTGAGGTAGGAGCACCACTGCTTAGTGCTTCCTaGTCCCTTCCAAGGCCGCTG +
Preference number: 2 (lower is better)
Translates to: DYHSLHRHCVLQTEVGAPLLSAS*SLPRPL
Trigger: CAGCGGCCTTGGAAGGGACCAGGAAGCACTAAGCAG...TGGTGCTCCTACCTCAGTCTGTAGAACACAGTGTCTATGCAGTGAGTGGTAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp GTTGCTGAGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAATGTTCCCGGTTTAAGGACTTGGTGTGTGTaGCGATGGTTCCGCGATGGG +
Preference number: 2 (lower is better)
Translates to: VAEPFSEEPLKKLNVPGLRTWCV*RWFRDG
Trigger: CCCATCGCGGAACCATCGGCACACACACCAAGTCCT...TAAACCGGGAACATTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCGGTAGCCGGGTTCCTTaGTCCACCCGGCTAGTTATT +
Preference number: 2 (lower is better)
Translates to: QSISLYPFLLLGKNPARLGSRVP*STRLVI
Trigger: AATAACTAGCCGGGTGGACCAAGGAACCCGGCTACC...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp GCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGGTAGCCGGGTTCCTTaGTCCACCCGGCTAGTTATT +
Preference number: 2 (lower is better)
Translates to: ALAYIPFFCWERTLLGSVGSRVP*STRLVI
Trigger: AATAACTAGCCGGGTGGACCAAGGAACCCGGCTACC...CACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp CCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGGATGGGTCCCATTGCTaGGAATGGGTAGCCGGGTTC +
Preference number: 2 (lower is better)
Translates to: PVYRALAYIPFFCWERTLDGSHC*EWVAGF
Trigger: GAACCCGGCTACCCATTCCCAGCAATGGGACCCATC...CAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp ATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGATGGTGTGTGTGCCGATaGTTCCGCGATGGGTCCCAT +
Preference number: 2 (lower is better)
Translates to: ISLYPFLLLGKNPARLSGWCVCR*FRDGSH
Trigger: ATGGGACCCATCGCGGAACCATCGGCACACACACCA...TCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR TCA 90 bp TTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATAGGATGAGAAACATTTaGGTTGCTGAGCCTTTCTCG +
Preference number: 2 (lower is better)
Translates to: LSHERTWCVCRWFRDGSHRMRNI*VAEPFS
Trigger: CGAGAAAGGCTCAGCAACTCAAATGTTTCTCATCCT...ATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR GCA 90 bp GCCTCTCTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGAGTCACCTGTAGGCATTaGTTAGAGGTCCTGCTTAGT +
Preference number: 2 (lower is better)
Translates to: ASLEAMKGQRRDYHSLHRVTCRH*LEVLLS
Trigger: ACTAAGCAGGACCTCTAAGCAATGCCTACAGGTGAC...TCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAGAGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CCCATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCGGGCCTCAGATGACTTaGGGTCTCCCTGAGATGAAA +
Preference number: 2 (lower is better)
Translates to: PIGKWFWVAYTKQQWKLAGPQMT*GLPEMK
Trigger: TTTCATCTCAGGGAGACCGCAAGTCATCTGAGGCCC...GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp GCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTGGGAAGCCGGTGGTCTGAGACTGCTTAGTGCTTCCTaGTCCCTTCCAAGGCCGCTG +
Preference number: 2 (lower is better)
Translates to: AYCRFRFVFREWEAGGLRLLSAS*SLPRPL
Trigger: CAGCGGCCTTGGAAGGGACCAGGAAGCACTAAGCAG...TCTCAGACCACCGGCTTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGTACCGCCCAATCTGTTaGGGCTGCTCCGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRYRPIC*GCSAPL
Trigger: CAGTGGAGCGGAGCAGCCCCAACAGATTGGGCGGTA...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCACACATCACTGCTGGTTaGTTGTTGGAGCACCCTGCC +
Preference number: 2 (lower is better)
Translates to: GENDLKILGQMLEMARIAHITAG*LLEHPA
Trigger: GGCAGGGTGCTCCAACAACCAACCAGCAGTGATGTG...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp TTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCTGGTGTGTGTGCCGATaGTTCCGCGATGGGTCCCAT +
Preference number: 2 (lower is better)
Translates to: FPVYRALAYIPFFCWERTWCVCR*FRDGSH
Trigger: ATGGGACCCATCGCGGAACCATCGGCACACACACCA...GGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp AGCCTTCAGGGTGCTTTCCCGGGTCATAATCCCCAATCTCCGCTTGAAGGATATATGCCGCTGCTTATCTaGGTCCACAAAACGAATCCC +
Preference number: 2 (lower is better)
Translates to: SLQGAFPGHNPQSPLEGYMPLLI*VHKTNP
Trigger: GGGATTCGTTTTGTGGACCCAGATAAGCAGCGGCAT...ATATCCTTCAAGCGGAGATTGGGGATTATGACCCGGGAAAGCACCCTGAAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR-3UTR TCA 90 bp GACTACCACTCACTGCATAGACACTGTGTTCTACAGACTGAGGTAGGAGCACCAGCGGTCTCCCTGAGATaGAAACATGCTCTTGTGTGT +
Preference number: 2 (lower is better)
Translates to: DYHSLHRHCVLQTEVGAPAVSLR*KHALVC
Trigger: ACACACAAGAGCATGTTTTCATCTCAGGGAGACCGC...TGGTGCTCCTACCTCAGTCTGTAGAACACAGTGTCTATGCAGTGAGTGGTAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR TCA 90 bp TATTTCTGGCGGCTCCCGTTTGATCTTGGCACTGGACTCCATTACTTCCTTTGCGTGGACTTTGAGTCATaGGAGGACTTGGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: YFWRLPFDLGTGLHYFLCVDFES*EDLVCV
Trigger: CACACACACCAAGTCCTCTCATGACTCAAAGTCCAC...GCAAAGGAAGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR TCA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGGCTCAGTGGACTTTaGGTCATGAGAGGACTTGGT +
Preference number: 2 (lower is better)
Translates to: QSISLYPFLLLGKNPARLRLSGL*VMRGLG
Trigger: ACCAAGTCCTCTCATGACTCAAAGTCCACTGAGCCT...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR TCA 90 bp CCGGAACCCACTGGCACCAGTGAGAAAATTGCAGGGTACAGAGGACAACAGTCTAGGATGAGAAACATTTaGGTTGCTGAGCCTTTCTCG +
Preference number: 2 (lower is better)
Translates to: PEPTGTSEKIAGYRGQQSRMRNI*VAEPFS
Trigger: CGAGAAAGGCTCAGCAACTCAAATGTTTCTCATCCT...AGACTGTTGTCCTCTGTACCCTGCAATTTTCTCACTGGTGCCAGTGGGTTCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR-3UTR GCA 90 bp GTTGTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGACAAGCACAGCTCCCTaGGGCTCTGCAGGCTCTCGT +
Preference number: 2 (lower is better)
Translates to: VVAFNGCHILNVDMVLPQTSTAP*GSAGSR
Trigger: ACGAGAGCCTGCAGAGCCGCAGGGAGCTGTGCTTGT...CTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAACAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCAGTGTGTGTACACGTATaGTGCTGTGAGGGACGACAC +
Preference number: 2 (lower is better)
Translates to: GENDLKILGQMLEMARIAVCVHV*CCEGRH
Trigger: GTGTCGTCCCTCACAGCAGCATACGTGTACACACAC...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCTGGGCCTCAGATGACTTaGGGTCTCCCTGAGATGAAA +
Preference number: 2 (lower is better)
Translates to: HWEMVLGSLHKTAMEAGPGPQMT*GLPEMK
Trigger: TTTCATCTCAGGGAGACCGCAAGTCATCTGAGGCCC...AGGGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp AAGAAACTGAATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCGCGATGGGTCCCATTaGTGGGAATGGGTAGCCGGG +
Preference number: 2 (lower is better)
Translates to: KKLNVPGLQSISLYPFLLRDGSH*WEWVAG
Trigger: CCCGGCTACCCATTCCCAGCAATGGGACCCATCGCG...CAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATTCAGTTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTTACCGCCCAATCTGTTaGGGCTGCTCCGCTCCACTG +
Preference number: 2 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETYRPIC*GCSAPL
Trigger: CAGTGGAGCGGAGCAGCCCCAACAGATTGGGCGGTA...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp CTTCAGCTAGTGTCCCATCTACTGGGTGACACTACTGCAATCATCAGTCTAGTATCCCATTGCTGGGAATaGGTAGCCGGGTTCCTTGGT +
Preference number: 2 (lower is better)
Translates to: LQLVSHLLGDTTAIISLVSHCWE*VAGFLG
Trigger: ACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGA...TACTAGACTGATGATTGCAGTAGTGTCACCCAGTAGATGGGACACTAGCTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR-3UTR TCA 90 bp CATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCTGCGGTCTCCCTGAGATaGAAACATGCTCTTGTGTGT +
Preference number: 2 (lower is better)
Translates to: HWEMVLGSLHKTAMEAGPAVSLR*KHALVC
Trigger: ACACACAAGAGCATGTTTTCATCTCAGGGAGACCGC...AGGGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CATGTATCCCAGACTGGGATTAACTCACTGACTGAGGATTGCCTTGAACTTCTGGTGTGTGTACACGTATaGTGCTGTGAGGGACGACAC +
Preference number: 2 (lower is better)
Translates to: HVSQTGINSLTEDCLELLVCVHV*CCEGRH
Trigger: GTGTCGTCCCTCACAGCAGCATACGTGTACACACAC...CAGAAGTTCAAGGCAATCCTCAGTCAGTGAGTTAATCCCAGTCTGGGATACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp GCCTCTCTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGATCACTGACTGAGGATTaGCTTGAACTTCTGATCTTC +
Preference number: 2 (lower is better)
Translates to: ASLEAMKGQRRDYHSLHRSLTED*LELLIF
Trigger: GAAGATCAGAAGTTCAAGGCAATCCTCAGTCAGTGA...TCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAGAGAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACACGCTCCACTGTTTTCTaGTCCCAGGAGTGTGCCCTT +
Preference number: 2 (lower is better)
Translates to: AFNGCHILNVDMVLPQATRSTVF*SQECAL
Trigger: AAGGGCACACTCCTGGGACCAGAAAACAGTGGAGCG...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGCGCTCCACTGTTTTCTaGTCCCAGGAGTGTGCCCTT +
Preference number: 2 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRRSTVF*SQECAL
Trigger: AAGGGCACACTCCTGGGACCAGAAAACAGTGGAGCG...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR TCA 90 bp GGGTCAGATGTTGGAAATGGCACGGATCGCAGCACTGTTAGGACTCTAGACACAATGGCTGTCATATTCTaGATGTGGACATGGTTCTAC +
Preference number: 2 (lower is better)
Translates to: GSDVGNGTDRSTVRTLDTMAVIF*MWTWFY
Trigger: GTAGAACCATGTCCACATTCAGAATATGACAGCCAT...TGTGTCTAGAGTCCTAACAGTGCTGCGATCCGTGCCATTTCCAACATCTGACCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR TCA 90 bp TTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGGTGGACTTTGAGTCATaGGAGGACTTGGTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: LQSISLYPFLLLGKNPARVDFES*EDLVCV
Trigger: CACACACACCAAGTCCTCTCATGACTCAAAGTCCAC...CCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR GCA 90 bp GTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAACAAGCACAGCTCCCTaGGGCTCTGCAGGCTCTCGT +
Preference number: 2 (lower is better)
Translates to: VLSCGICFRSHTNCCWYGTSTAP*GSAGSR
Trigger: ACGAGAGCCTGCAGAGCCGCAGGGAGCTGTGCTTGT...TCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CCCATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCATTCCTATAGTAAGTaGTGGTCTCTGCCATGGTCA +
Preference number: 2 (lower is better)
Translates to: PIGKWFWVAYTKQQWKLAHSYSK*WSLPWS
Trigger: TGACCATGGCAGAGACCAGCACTTACTATAGGAATG...GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACACTTTACGTGAGTCCTTaGGCCTCAGATGACTTGCGG +
Preference number: 2 (lower is better)
Translates to: AFNGCHILNVDMVLPQATLYVSP*ASDDLR
Trigger: CCGCAAGTCATCTGAGGCCCAAGGACTCACGTAAAG...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp AAGAAACTGAATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCCGATGGTTCCGCGATaGGTCCCATTGCTGGGAATG +
Preference number: 2 (lower is better)
Translates to: KKLNVPGLQSISLYPFLLPMVPR*VPLLGM
Trigger: CATTCCCAGCAATGGGACCCATCGCGGAACCATCGG...CAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATTCAGTTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp TTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGAGTCATGAGAGGACTTaGTGTGTGTGCCGATGGTTC +
Preference number: 2 (lower is better)
Translates to: LQSISLYPFLLLGKNPARSHERT*CVCRWF
Trigger: GAACCATCGGCACACACACCAAGTCCTCTCATGACT...CCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CCA 90 bp GCTTTCCCGGGTCATAATCCCCAATCTCCGCTTGAAGGATATAGGCCGCTAACAGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 2 (lower is better)
Translates to: AFPGHNPQSPLEGYRPLTGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...TGTTAGCGGCCTATATCCTTCAAGCGGAGATTGGGGATTATGACCCGGGAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR-3UTR TCA 90 bp GACTACCACTCACTGCATAGACACTGTGTTCTACAGACTGAGGTAGGAGCACCAATGGCTGTCATATTCTaGATGTGGACATGGTTCTAC +
Preference number: 2 (lower is better)
Translates to: DYHSLHRHCVLQTEVGAPMAVIF*MWTWFY
Trigger: GTAGAACCATGTCCACATTCAGAATATGACAGCCAT...TGGTGCTCCTACCTCAGTCTGTAGAACACAGTGTCTATGCAGTGAGTGGTAGTC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp GTTAGAAAAATACTTTACCCTCTGAGCTACACATCCTCAGCCCTATGTTTTTATAGCTCCCTGCGGCTCTaGAGGCTCTCGTGTGACTCA +
Preference number: 2 (lower is better)
Translates to: VRKILYPLSYTSSALCFYSSLRL*RLSCDS
Trigger: TGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCT...ATAAAAACATAGGGCTGAGGATGTGTAGCTCAGAGGGTAAAGTATTTTTCTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp GTTGTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGCTGGTCCCAGGAGTGTaGCCTTTGACTGTCCTTTAC +
Preference number: 2 (lower is better)
Translates to: VVAFNGCHILNVDMVLPQLVPGV*PLTVLY
Trigger: GTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAG...CTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAACAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp AATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAAATAAGCTGGTCCCAGGAGTGTaGCCTTTGACTGTCCTTTAC +
Preference number: 2 (lower is better)
Translates to: NGCHILNVDMVLPQATNKLVPGV*PLTVLY
Trigger: GTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAG...CTTATTTGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CGATGTTTTACAGAGAAGACGGCCGTGGTAGAGATCCCTTTTGATCTGAAGGAATCCAACCAATGCCGCTaGTTATCTGGGTCCACAAAA +
Preference number: 2 (lower is better)
Translates to: RCFTEKTAVVEIPFDLKESNQCR*LSGSTK
Trigger: TTTTGTGGACCCAGATAAGCAGCGGCATTGGTTGGA...TTCCTTCAGATCAAAAGGGATCTCTACCACGGCCGTCTTCTCTGTAAAACATCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR-3UTR TCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTGCGGTCTCCCTGAGATaGAAACATGCTCTTGTGTGT +
Preference number: 2 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETAVSLR*KHALVC
Trigger: ACACACAAGAGCATGTTTTCATCTCAGGGAGACCGC...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR TCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTATTGCCTTGAACTTCTaGTCTTCCCGTCTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETIALNF*SSRLPA
Trigger: AGCAGGGAGACGGGAAGATCAGAAGTTCAAGGCAAT...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR TCA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCAAGTGGCAGTACTTCTTaGTCTTGGTATCAGATGACA +
Preference number: 2 (lower is better)
Translates to: GENDLKILGQMLEMARIASGSTS*SWYQMT
Trigger: TGTCATCTGATACCAAGATCAAGAAGTACTGCCACT...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CATGTATCCCAGACTGGGATTAACTCACTGACTGAGGATTGCCTTGAACTTCTGCATTCCTATAGTAAGTaGTGGTCTCTGCCATGGTCA +
Preference number: 2 (lower is better)
Translates to: HVSQTGINSLTEDCLELLHSYSK*WSLPWS
Trigger: TGACCATGGCAGAGACCAGCACTTACTATAGGAATG...CAGAAGTTCAAGGCAATCCTCAGTCAGTGAGTTAATCCCAGTCTGGGATACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp AGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGAGCCATGTTCTTCTATaGATGCATTATCAGAGGCGT +
Preference number: 2 (lower is better)
Translates to: RSHTNCCWYGNDQIGLDPSHVLL*MHYQRR
Trigger: ACGCCTCTGATAATGCATGCATAGAAGAACATGGCT...CGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp GTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGACTGGTCCCAGGAGTGTaGCCTTTGACTGTCCTTTAC +
Preference number: 2 (lower is better)
Translates to: VLSCGICFRSHTNCCWYGLVPGV*PLTVLY
Trigger: GTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAG...TCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp ACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGTTCATAGTGAGCCATGTTCTTCTATaGATGCATTATCAGAGGCGT +
Preference number: 2 (lower is better)
Translates to: TNCCWYGNDQIGLDPFIVSHVLL*MHYQRR
Trigger: ACGCCTCTGATAATGCATGCATAGAAGAACATGGCT...CACTATGAACGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACGGGACCACGGGTATATaGTACCACACCTGGTTTTGT +
Preference number: 2 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHGTTGI*YHTWFC
Trigger: ACAAAACCAGGTGTGGTAGCATATACCCGTGGTCCC...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp ATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCGGGCCTCAGATGACTTaGGGTCTCCCTGAGATGAAA +
Preference number: 2 (lower is better)
Translates to: ICFRSHTNCCWYGNDQIGGPQMT*GLPEMK
Trigger: TTTCATCTCAGGGAGACCGCAAGTCATCTGAGGCCC...GCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR GCA 90 bp ATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCGTTGTTGGAGCACCCTaGCCATTGGGAAATGGTTCT +
Preference number: 2 (lower is better)
Translates to: ICFRSHTNCCWYGNDQIGVVGAP*PLGNGS
Trigger: AGAACCATTTCCCAATGGGCAGGGTGCTCCAACAAC...GCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CAA 90 bp AATGCTGGGACCACGGGTATATGCTACCACACCTGGTTTTGTGTATaGTTTGAAGTCAAATCCAGGGCCTTATACATGTTAGAAAAATAC +
Preference number: 2 (lower is better)
Translates to: NAGTTGICYHTWFCV*FEVKSRALYMLEKY
Trigger: GTATTTTTCTAACATGTATAAGGCCCTGGATTTGACTTCAAACAATACACAAAACCAGGTGTGGTAGCATATACCCGTGGTCCCAGCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp AGCCTTGAGGGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCAATATGCTACCACACCTaGTTTTGTGTATTGTTTGAA +
Preference number: 2 (lower is better)
Translates to: SLEGENDLKILGQMLEMAICYHT*FCVLFE
Trigger: TTCAAACAATACACAAAACCAGGTGTGGTAGCATAT...TGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCCCTCAAGGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTCACACAAATTGTTGCTaGTACGGAAATGATCAGATA +
Preference number: 2 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETHTNCC*YGNDQI
Trigger: TATCTGATCATTTCCGTACCAGCAACAATTTGTGTG...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACCTTTTAAGTAACCTCTaGTCTTTACTAGGATCCCCT +
Preference number: 2 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHLLSNL*SLLGSP
Trigger: AGGGGATCCTAGTAAAGACCAGAGGTTACTTAAAAG...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CCA 90 bp GAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTTTATATGCTACCACACCTaGTTTTGTGTATTGTTTGAA +
Preference number: 2 (lower is better)
Translates to: ERKEETQNTAKPDENRNFICYHT*FCVLFE
Trigger: TTCAAACAATACACAAAACCAGGTGTGGTAGCATAT...AAAGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp ACCATCGCCTGTTCTTGCTCTGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCTCCTCCCAGGGCCTCC +
Preference number: 3 (lower is better)
Translates to: TIACSCSDPPCP*HRALSSPPRAS
Trigger: GGAGGCCCTGGGAGGAGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGGCGATGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp CTCCCAGGGCCTCCGCCTCTGTCGCAGTCGGGGTGCTaGCCTCCGACTCCTTCTCCTCCTCAATGCTGCACG +
Preference number: 3 (lower is better)
Translates to: LPGPPPLSQSGC*PPTPSPPQCCT
Trigger: CGTGCAGCATTGAGGAGGAGAAGGAGTCGGAGGCCAGCACCCCGACTGCGACAGAGGCGGAGGCCCTGGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR CAA 90 bp GGCAAACCATCGCCTGTTCTTGCTCTGACCCGCCGTGCCCCTGACACAGGGCCCCCGCGATGGGTCCCATaGCTGGGAATGGGTAGCCGG +
Preference number: 3 (lower is better)
Translates to: GKPSPVLALTRRAPDTGPPRWVP*LGMGSR
Trigger: CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG...GGGCCCTGTGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGGCGATGGTTTGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 72 bp GCTGTGCTCGGCTACAGGGGTGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATCCGCTATCACAGCGAC +
Preference number: 3 (lower is better)
Translates to: AVLGYRGGQHTV*GAVGLIRYHSD
Trigger: GTCGCTGTGATAGCGGATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGCACAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp GCAGCATCAGCTCCAGGCTGTGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGGGGCTGTAGGCCTCAT +
Preference number: 3 (lower is better)
Translates to: AASAPGCARLQG*AAHCLRGCRPH
Trigger: ATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGATGCTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp TGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTaGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGC +
Preference number: 3 (lower is better)
Translates to: CVCRWFRDGSHC*EWVAGFLGPPG
Trigger: GCCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CAA 90 bp TTTGTGAAACCTTCCTGTCTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCCCGCGATGGGTCCCATaGCTGGGAATGGGTAGCCGG +
Preference number: 3 (lower is better)
Translates to: FVKPSCLARKPFLPAHSPPRWVP*LGMGSR
Trigger: CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG...GGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAGACAGGAAGGTTTCACAAA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR GCA 72 bp TGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTaGTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCC +
Preference number: 3 (lower is better)
Translates to: WCVCRWFRDGSH*WEWVAGFLGPP
Trigger: GGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR GCA 72 bp TTCTCCTCCTCAATGCTGCACGTGGCCCCGTTGATCTaGCGGGAGAGCAGCATCAGCTCCAGGCTGTGCTCG +
Preference number: 3 (lower is better)
Translates to: FSSSMLHVAPLI*RESSISSRLCS
Trigger: CGAGCACAGCCTGGAGCTGATGCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAGCATTGAGGAGGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR TCA 72 bp ACTCCTTCTCCTCCTCAATGCTGCACGTGGCCCCGTTaGTCTGCCGGGAGAGCAGCATCAGCTCCAGGCTGT +
Preference number: 3 (lower is better)
Translates to: TPSPPQCCTWPR*SAGRAASAPGC
Trigger: ACAGCCTGGAGCTGATGCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAGCATTGAGGAGGAGAAGGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp CTTCGTGTCCTGGGGACGCTGCTCAGTCGTGGGCCATaGGTTATAGAAGGACAGCTGCGGCTAGGGACCATC +
Preference number: 3 (lower is better)
Translates to: LRVLGTLLSRGP*VIEGQLRLGTI
Trigger: GATGGTCCCTAGCCGCAGCTGTCCTTCTATAACCCATGGCCCACGACTGAGCAGCGTCCCCAGGACACGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp GTGTCCCCATGGGAAGAGGACCGCACTGGGGTGGAATaGGCACTGTCTCGTAGCGACTCAAGGCCTTCCATG +
Preference number: 3 (lower is better)
Translates to: VSPWEEDRTGVE*ALSRSDSRPSM
Trigger: CATGGAAGGCCTTGAGTCGCTACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCCCATGGGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp GGAAGGTGTCCCCATGGGAAGAGGACCGCACTGGGGTaGAATGGGCACTGTCTCGTAGCGACTCAAGGCCTT +
Preference number: 3 (lower is better)
Translates to: GRCPHGKRTALG*NGHCLVATQGL
Trigger: AAGGCCTTGAGTCGCTACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCCCATGGGGACACCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 72 bp GGAGGGGCATACTGTAACAAGACAAGCACAGCTCCCTaGGGCTCTGCAGGCTCTCGTGTGACTCAGCACAGG +
Preference number: 3 (lower is better)
Translates to: GGAYCNKTSTAP*GSAGSRVTQHR
Trigger: CCTGTGCTGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTGCTTGTCTTGTTACAGTATGCCCCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR GCA 72 bp CTATCACAGCGACACGTTCATTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGAAGGTGTCCCCATGGG +
Preference number: 3 (lower is better)
Translates to: LSQRHVHCCLPG*FSREAGRCPHG
Trigger: CCCATGGGGACACCTTCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTCGCTGTGATAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp TGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTaGTCCACCCGGCTAGTTATTGGGAGGAGTCATGCC +
Preference number: 3 (lower is better)
Translates to: WVPLLGMGSRVP*STRLVIGRSHA
Trigger: GGCATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR CCA 72 bp AGCTCTTCTTCGTGTCCTGGGGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGGACAGCTGCGGCTAGG +
Preference number: 3 (lower is better)
Translates to: SSSSCPGDAAQS*AMGYRRTAAAR
Trigger: CCTAGCCGCAGCTGTCCTTCTATAACCCATGGCCCACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR CAA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGCACCAGTGAGAAAATaGCAGGGTACAGAGGACAAC +
Preference number: 3 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSRAPVRK*QGTEDN
Trigger: GTTGTCCTCTGTACCCTGCAATTTTCTCACTGGTGC...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR TCA 72 bp GGTCGGCAGGGTAAAACTTCACGCGGAAGCACATGGTaGACGGAGGCTGGGATCTCAGCTGCTTCACCACTG +
Preference number: 3 (lower is better)
Translates to: GRQGKTSRGSTW*TEAGISAASPL
Trigger: CAGTGGTGAAGCAGCTGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCGTGAAGTTTTACCCTGCCGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR GCA 72 bp GCTGCTCCGCTCCACTGTTTTCTGGTCCCAGGAGTGTaGCCTTTGACTGTCCTTTACGTGAGTCCTTGGGCC +
Preference number: 3 (lower is better)
Translates to: AAPLHCFLVPGV*PLTVLYVSPWA
Trigger: GGCCCAAGGACTCACGTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAGAAAACAGTGGAGCGGAGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR GCA 72 bp CTCATCCGCTATCACAGCGACACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTGAGGCAGGAAGGTGTC +
Preference number: 3 (lower is better)
Translates to: LIRYHSDTFIAV*PAASHVRQEGV
Trigger: GACACCTTCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTCGCTGTGATAGCGGATGAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 72 bp TGTAGGCCTCATCCGCTATCACAGCGACACGTTCATTaGTGTCTGCCCGGCTGCTTCTCACGTGAGGCAGGA +
Preference number: 3 (lower is better)
Translates to: CRPHPLSQRHVH*CLPGCFSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTCGCTGTGATAGCGGATGAGGCCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR-3UTR CAA 90 bp GCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGCCGCGATGGGTCCCATaGCTGGGAATGGGTAGCCGG +
Preference number: 3 (lower is better)
Translates to: ALAYIPFFCWERTLLGSVPRWVP*LGMGSR
Trigger: CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG...CACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CAA 90 bp CCTCATCCGCTATCACAGCGACACGTTCATTGCTGTCTGCCCGGCTGCTTCTCACATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGG +
Preference number: 3 (lower is better)
Translates to: PHPLSQRHVHCCLPGCFSHFQRC*QASGVG
Trigger: CCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATG...TGAGAAGCAGCCGGGCAGACAGCAATGAACGTGTCGCTGTGATAGCGGATGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp TGTAGGCATTGCTTAGAGGTCCTGCTTAGTGCTTCCTaGTCCCTTCCAAGGCCGCTGCTCCTTCTCGATGCC +
Preference number: 3 (lower is better)
Translates to: CRHCLEVLLSAS*SLPRPLLLLDA
Trigger: GGCATCGAGAAGGAGCAGCGGCCTTGGAAGGGACCAGGAAGCACTAAGCAGGACCTCTAAGCAATGCCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTACTCCATTACTTCCTTaGCGACCCGGCCACTGTATC +
Preference number: 3 (lower is better)
Translates to: VMRGLGVCADGSAMGPIATPLLP*RPGHCI
Trigger: GATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGT...AGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR TCA 72 bp ACACCAGGCAATGGCAGGCTGCCTCTCTCGAGGCTATaGAAGGTCAGAGGCGAGACTACCACTCACTGCATA +
Preference number: 3 (lower is better)
Translates to: TPGNGRLPLSRL*KVRGETTTHCI
Trigger: TATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAGAGAGGCAGCCTGCCATTGCCTGGTGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR GCA 72 bp CAGTGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTaGCGATGGTTCCGCGATGGGTCCCATTGCTGGGAA +
Preference number: 3 (lower is better)
Translates to: QWTLSHERTWCV*RWFRDGSHCWE
Trigger: TTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR TCA 72 bp CTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGACTTTaGGTCATGAGAGGACTTGGTGTGTGTGCCGATGGT +
Preference number: 3 (lower is better)
Translates to: LLGKNPARLSGL*VMRGLGVCADG
Trigger: ACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR GCA 72 bp GAAGCTCAAATATTCTACCGCCCAATCTGTTGGGGCTaGTCCGCTCCACTGTTTTCTGGTCCCAGGAGTGTG +
Preference number: 3 (lower is better)
Translates to: EAQIFYRPICWG*SAPLFSGPRSV
Trigger: CACACTCCTGGGACCAGAAAACAGTGGAGCGGAGCAGCCCCAACAGATTGGGCGGTAGAATATTTGAGCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR GCA 72 bp GGTTATAGAAGGACAGCTGCGGCTAGGGACCATCCCTaGTCTGTGTATTTCTGGCGGCTCCCGTTTGATCTT +
Preference number: 3 (lower is better)
Translates to: GYRRTAAARDHP*SVYFWRLPFDL
Trigger: AAGATCAAACGGGAGCCGCCAGAAATACACAGAGCAGGGATGGTCCCTAGCCGCAGCTGTCCTTCTATAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp ACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATaGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTA +
Preference number: 3 (lower is better)
Translates to: TLSHERTWCVCR*FRDGSHCWEWV
Trigger: TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CAA 90 bp GACTACCACTCACTGCATAGACACTGTGTTCTACAGACTGAGGTAGGAGCACCATTCCAGGAGCAGGGGTaGACCCTAAGGGTGGCATTC +
Preference number: 3 (lower is better)
Translates to: DYHSLHRHCVLQTEVGAPFQEQG*TLRVAF
Trigger: GAATGCCACCCTTAGGGTCAACCCCTGCTCCTGGAA...TGGTGCTCCTACCTCAGTCTGTAGAACACAGTGTCTATGCAGTGAGTGGTAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTGGGAAGCCGGTGGTCTGAGACTACCGCCCAATCTGTaGGGGCTGCTCCGCTCCACT +
Preference number: 3 (lower is better)
Translates to: AYCRFRFVFREWEAGGLRLPPNL*GLLRST
Trigger: AGTGGAGCGGAGCAGCCCCAACAGATTGGGCGGTAG...TCTCAGACCACCGGCTTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp AGCCTTGAGGGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACTACCGCCCAATCTGTaGGGGCTGCTCCGCTCCACT +
Preference number: 3 (lower is better)
Translates to: SLEGENDLKILGQMLEMALPPNL*GLLRST
Trigger: AGTGGAGCGGAGCAGCCCCAACAGATTGGGCGGTAG...TGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCCCTCAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp GATTGCCTTGAACTTCTGATCTTCCCGTCTCCCTGCTaGATGCTGGGACCACGGGTATATGCTACCACACCT +
Preference number: 3 (lower is better)
Translates to: DCLELLIFPSPC*MLGPRVYATTP
Trigger: AGGTGTGGTAGCATATACCCGTGGTCCCAGCATTCAGCAGGGAGACGGGAAGATCAGAAGTTCAAGGCAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp CCATCCCTGCTCTGTGTATTTCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCATTACTTCCTTTGCGA +
Preference number: 3 (lower is better)
Translates to: PSLLCVFLAAPV*SWHWTPLLPLR
Trigger: TCGCAAAGGAAGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATACACAGAGCAGGGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR TCA 72 bp CATGCCTTCTCAGGTGTCAATGAGCAGGCTCACCACTaGGCGGATTTTGCAGGCAAACCATCGCCTGTTCTT +
Preference number: 3 (lower is better)
Translates to: HAFSGVNEQAHH*ADFAGKPSPVL
Trigger: AAGAACAGGCGATGGTTTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTCATTGACACCTGAGAAGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR TCA 72 bp GGTGAACGGAGGCTGGGATCTCAGCTGCTTCACCACTaGCTTTGTAAACTCCAACCAATGCCGCTGCTTATC +
Preference number: 3 (lower is better)
Translates to: GERRLGSQLLHH*LCKLQPMPLLI
Trigger: GATAAGCAGCGGCATTGGTTGGAGTTTACAAAGTCAGTGGTGAAGCAGCTGAGATCCCAGCCTCCGTTCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR CCA 72 bp GTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTaGCACCACTTTGACACCCCAGAAGCACTAAAAGTC +
Preference number: 3 (lower is better)
Translates to: VTVLWDISDRTL*HHFDTPEALKV
Trigger: GACTTTTAGTGCTTCTGGGGTGTCAAAGTGGTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR CCA 72 bp ATAAGGGAAGCTCAAATATTCTACCGCCCAATCTGTTaGGGCTGCTCCGCTCCACTGTTTTCTGGTCCCAGG +
Preference number: 3 (lower is better)
Translates to: IREAQIFYRPIC*GCSAPLFSGPR
Trigger: CCTGGGACCAGAAAACAGTGGAGCGGAGCAGCCCCAACAGATTGGGCGGTAGAATATTTGAGCTTCCCTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 72 bp CTGGCCCTGTGTAGACCAGGGTTTGCATCGTACTGCTaGGGACCAGTCTCTCAGCATATTGCAGATTTAGGT +
Preference number: 3 (lower is better)
Translates to: LALCRPGFASYC*GPVSQHIADLG
Trigger: ACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTACGATGCAAACCCTGGTCTACACAGGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 72 bp GGTTGTTGGAGCACCCTGCCCATTGGGAAATGGTTCTaGGTAGCTTACACAAAACAGCAATGGAAGCTGGCC +
Preference number: 3 (lower is better)
Translates to: GCWSTLPIGKWF*VAYTKQQWKLA
Trigger: GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGGCAGGGTGCTCCAACAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp AATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACAGCCCTGTTTCCCCTACCGCCCAATCTGTaGGGGCTGCTCCGCTCCACT +
Preference number: 3 (lower is better)
Translates to: NLLCCIRIEIPVHTALFPLPPNL*GLLRST
Trigger: AGTGGAGCGGAGCAGCCCCAACAGATTGGGCGGTAG...GGGAAACAGGGCTGTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp AGTTATTGGGAGGAGTCATGCCTTCTCAGGTGTCAATaGGCAGGCTCACCACTGAGCGGATTTTGCAGGCAA +
Preference number: 3 (lower is better)
Translates to: SYWEESCLLRCQ*AGSPLSGFCRQ
Trigger: TTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTCATTGACACCTGAGAAGGCATGACTCCTCCCAATAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CCA 72 bp GGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATaGAAGCTGGCCCTGTGTAGACCAGGGTTTGCATCG +
Preference number: 3 (lower is better)
Translates to: GKWFWVAYTKQQ*KLALCRPGFAS
Trigger: CGATGCAAACCCTGGTCTACACAGGGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGTTCCAGGAGCAGGGGTaGACCCTAAGGGTGGCATTC +
Preference number: 3 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRFQEQG*TLRVAF
Trigger: GAATGCCACCCTTAGGGTCAACCCCTGCTCCTGGAA...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp TCTGATCTTCCCGTCTCCCTGCTGAATGCTGGGACCACGGGTATATGCTACCACTGCTCTTGTGTGTTATaGGTGGTAAGAAGTGTAGAG +
Preference number: 3 (lower is better)
Translates to: SDLPVSLLNAGTTGICYHCSCVL*VVRSVE
Trigger: CTCTACACTTCTTACCACCAATAACACACAAGAGCA...GTGGTAGCATATACCCGTGGTCCCAGCATTCAGCAGGGAGACGGGAAGATCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 72 bp ATCACTGCTGGTTGGTTGTTGGAGCACCCTGCCCATTaGGAAATGGTTCTGGGTAGCTTACACAAAACAGCA +
Preference number: 3 (lower is better)
Translates to: ITAGWLLEHPAH*EMVLGSLHKTA
Trigger: TGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGGCAGGGTGCTCCAACAACCAACCAGCAGTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp TGTGTGTGTGTGTGTGTGTGTACACGTATGCTGCTGTaGGGGACGACACTAAGTGCTCTTAGACCTTGTTTC +
Preference number: 3 (lower is better)
Translates to: CVCVCVCTRMLL*GTTLSALRPCF
Trigger: GAAACAAGGTCTAAGAGCACTTAGTGTCGTCCCTCACAGCAGCATACGTGTACACACACACACACACACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR GCA 72 bp CCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTaGCATGGTCAAATTCTGTCACCTGTAGGCATTGCT +
Preference number: 3 (lower is better)
Translates to: PKGGIPIVSAGL*HGQILSPVGIA
Trigger: AGCAATGCCTACAGGTGACAGAATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR CCA 72 bp CTGAATGCTGGGACCACGGGTATATGCTACCACACCTaGTTTTGTGTATTGTTTGAAGTCAAATCCAGGGCC +
Preference number: 3 (lower is better)
Translates to: LNAGTTGICYHT*FCVLFEVKSRA
Trigger: GGCCCTGGATTTGACTTCAAACAATACACAAAACCAGGTGTGGTAGCATATACCCGTGGTCCCAGCATTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 72 bp CCAGTTTCTCTGAATGTTTCGGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGTGCTTTCCCGGGTCAT +
Preference number: 3 (lower is better)
Translates to: PVSLNVSGKIGT*SCSLQGAFPGH
Trigger: ATGACCCGGGAAAGCACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACATTCAGAGAAACTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR-3UTR CAA 90 bp TGGCAGTACTTCTTGATCTTGGTATCAGATGACACACATCACTGCTGGTTGGTTCCAGGAGTGTGCCCTTaGACTGTCCTTTACGTGAGT +
Preference number: 3 (lower is better)
Translates to: WQYFLILVSDDTHHCWLVPGVCP*TVLYVS
Trigger: ACTCACGTAAAGGACAGTCAAAGGGCACACTCCTGG...AACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAAGAAGTACTGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTCCAGGAGTGTGCCCTTaGACTGTCCTTTACGTGAGT +
Preference number: 3 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETPGVCP*TVLYVS
Trigger: ACTCACGTAAAGGACAGTCAAAGGGCACACTCCTGG...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GGGTCAGATGTTGGAAATGGCACGGATCGCAGCACTGTTAGGACTCTAGACACATGTTTTTGGGTGTTGTaGTTGCTTTTAATGGCTGTC +
Preference number: 3 (lower is better)
Translates to: GSDVGNGTDRSTVRTLDTCFWVL*LLLMAV
Trigger: GACAGCCATTAAAAGCAACAACAACACCCAAAAACA...TGTGTCTAGAGTCCTAACAGTGCTGCGATCCGTGCCATTTCCAACATCTGACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp GAACAAATTGCTGCTGGACACTGTGCGGACTTGGCTTaGCTTTTCCAGCTTGTAGAAGGCTTGGTTCTCAAT +
Preference number: 3 (lower is better)
Translates to: EQIAAGHCADLA*LFQLVEGLVLN
Trigger: ATTGAGAACCAAGCCTTCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR GCA 72 bp GGTAGGAGCACCACTCTAGAAGGCAATCTGCTATGTTaGATAAGAATAGAAATCCCAGTTCACACAGCCCTG +
Preference number: 3 (lower is better)
Translates to: GRSTTLEGNLLC*IRIEIPVHTAL
Trigger: CAGGGCTGTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTGGTGCTCCTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CCA 72 bp TCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTaGGAAGCCGGTGGTCTGAGACACCTCATGTATCCC +
Preference number: 3 (lower is better)
Translates to: SAYCRFRFVFRE*EAGGLRHLMYP
Trigger: GGGATACATGAGGTGTCTCAGACCACCGGCTTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp CCCATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCGATGAAAACATGCTCTaGTGTGTTATTGGTGGTAAG +
Preference number: 3 (lower is better)
Translates to: PIGKWFWVAYTKQQWKLADENML*CVIGGK
Trigger: CTTACCACCAATAACACACAAGAGCATGTTTTCATC...GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GACTACCACTCACTGCATAGACACTGTGTTCTACAGACTGAGGTAGGAGCACCAACCTGGTTTTGTGTATaGTTTGAAGTCAAATCCAGG +
Preference number: 3 (lower is better)
Translates to: DYHSLHRHCVLQTEVGAPTWFCV*FEVKSR
Trigger: CCTGGATTTGACTTCAAACAATACACAAAACCAGGT...TGGTGCTCCTACCTCAGTCTGTAGAACACAGTGTCTATGCAGTGAGTGGTAGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp AGCCTTGAGGGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACAGTGGCAGTACTTCTaGATCTTGGTATCAGATGAC +
Preference number: 3 (lower is better)
Translates to: SLEGENDLKILGQMLEMAQWQYF*ILVSDD
Trigger: GTCATCTGATACCAAGATCAAGAAGTACTGCCACTG...TGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCCCTCAAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCAGATGAAAACATGCTCTaGTGTGTTATTGGTGGTAAG +
Preference number: 3 (lower is better)
Translates to: GENDLKILGQMLEMARIADENML*CVIGGK
Trigger: CTTACCACCAATAACACACAAGAGCATGTTTTCATC...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACACCTTGGTTATGCAGTaGACAAGCAGCAGTGGCTCA +
Preference number: 3 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHTLVMQ*TSSSGS
Trigger: TGAGCCACTGCTGCTTGTCAACTGCATAACCAAGGT...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCATTTTGGGTGTTGTTGTaGCTTTTAATGGCTGTCATA +
Preference number: 3 (lower is better)
Translates to: GENDLKILGQMLEMARIAFWVLL*LLMAVI
Trigger: TATGACAGCCATTAAAAGCAACAACAACACCCAAAA...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCAGTTTGTTTTTGGGTGTaGTTGTTGCTTTTAATGGCT +
Preference number: 3 (lower is better)
Translates to: GENDLKILGQMLEMARIAVCFWV*LLLLMA
Trigger: AGCCATTAAAAGCAACAACAACACCCAAAAACAAAC...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp CAGTCTGAGTCTTCAGCTAGTGTCCCATCTACTGGGTaGCACTACTGCAATCATCAGTCTAGTAAAATAAGT +
Preference number: 3 (lower is better)
Translates to: QSESSASVPSTG*HYCNHQSSKIS
Trigger: ACTTATTTTACTAGACTGATGATTGCAGTAGTGTCACCCAGTAGATGGGACACTAGCTGAAGACTCAGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR TCA 72 bp AACTTTCTATTTAATCATTCTACGCCGTTTACTTTGTaGAACCTTCCTGTCTGGCGAGGAAGCCATTCCTGC +
Preference number: 3 (lower is better)
Translates to: NFLFNHSTPFTL*NLPVWRGSHSC
Trigger: GCAGGAATGGCTTCCTCGCCAGACAGGAAGGTTTCACAAAGTAAACGGCGTAGAATGATTAAATAGAAAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
3UTR GCA 72 bp TCATGTGGTATATGTTTTAGATCTCACACAAATTGTTaGTGGTACGGAAATGATCAGATAGGCCTGGACCCG +
Preference number: 3 (lower is better)
Translates to: SCGICFRSHTNC*WYGNDQIGLDP
Trigger: CGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp TGGCAGTACTTCTTGATCTTGGTATCAGATGACACACATCACTGCTGGTTGGTTTGTTTTTGGGTGTTGTaGTTGCTTTTAATGGCTGTC +
Preference number: 3 (lower is better)
Translates to: WQYFLILVSDDTHHCWLVCFWVL*LLLMAV
Trigger: GACAGCCATTAAAAGCAACAACAACACCCAAAAACA...AACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAAGAAGTACTGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp CTAGTCACCAGTAAAGGGGGTTTGTTACTGAACTATTaGAAACTATTTGGAAACCGAATCGAAGGGAGCCTT +
Preference number: 3 (lower is better)
Translates to: LVTSKGGLLLNY*KLFGNRIEGSL
Trigger: AAGGCTCCCTTCGATTCGGTTTCCAAATAGTTTTCAATAGTTCAGTAACAAACCCCCTTTACTGGTGACTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR TCA 72 bp TTCTGCATATTGAAGGATGAGAAACATTTGAGTTGCTaGGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAA +
Preference number: 3 (lower is better)
Translates to: FCILKDEKHLSC*AFLGRASEETE
Trigger: TTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAACTCAAATGTTTCTCATCCTTCAATATGCAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
3UTR-3UTR CAA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTGATGAAAACATGCTCTaGTGTGTTATTGGTGGTAAG +
Preference number: 3 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETDENML*CVIGGK
Trigger: CTTACCACCAATAACACACAAGAGCATGTTTTCATC...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGTTTTGGGTGTTGTTGTaGCTTTTAATGGCTGTCATA +
Preference number: 3 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRFWVLL*LLMAVI
Trigger: TATGACAGCCATTAAAAGCAACAACAACACCCAAAA...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp GTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGACAGTGGCAGTACTTCTaGATCTTGGTATCAGATGAC +
Preference number: 3 (lower is better)
Translates to: VLSCGICFRSHTNCCWYGQWQYF*ILVSDD
Trigger: GTCATCTGATACCAAGATCAAGAAGTACTGCCACTG...TCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTGAAGCACTAAAAGTCTaGAGGTTCTTCAGAAAGAAA +
Preference number: 3 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETEALKV*RFFRKK
Trigger: TTTCTTTCTGAAGAACCTCAAGACTTTTAGTGCTTC...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACTGTTTTTGGGTGTTGTaGTTGCTTTTAATGGCTGTC +
Preference number: 3 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHCFWVL*LLLMAV
Trigger: GACAGCCATTAAAAGCAACAACAACACCCAAAAACA...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACATTGCAGATTTAGGTTaGTTTTTAGGGAGTGGGAAG +
Preference number: 3 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHIADLG*FLGSGK
Trigger: CTTCCCACTCCCTAAAAACAAACCTAAATCTGCAAT...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp ATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCATTGCAGATTTAGGTTaGTTTTTAGGGAGTGGGAAG +
Preference number: 3 (lower is better)
Translates to: ICFRSHTNCCWYGNDQIGIADLG*FLGSGK
Trigger: CTTCCCACTCCCTAAAAACAAACCTAAATCTGCAAT...GCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR-3UTR CAA 90 bp TTGTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAAGCACTAAAAGTCTaGAGGTTCTTCAGAAAGAAA +
Preference number: 3 (lower is better)
Translates to: LSCHVVYVLDLTQIVAGTEALKV*RFFRKK
Trigger: TTTCTTTCTGAAGAACCTCAAGACTTTTAGTGCTTC...CGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGACAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
3UTR TCA 72 bp AGGGCCTTATACATGTTAGAAAAATACTTTACCCTCTaGGCTACACATCCTCAGCCCTATGTTTTTATAAAA +
Preference number: 3 (lower is better)
Translates to: RALYMLEKYFTL*ATHPQPYVFIK
Trigger: TTTTATAAAAACATAGGGCTGAGGATGTGTAGCTCAGAGGGTAAAGTATTTTTCTAACATGTATAAGGCCCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CCTTCCTGTCTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCGGCCTGCCCGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: PSCLARKPFLPAHSPGLPVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...GGGCAGGCCGGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAGACAGGAAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
CDS-3UTR TCA 90 bp TGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: CVPMVPRWVPLLGMGSRVDPPCP*HRALSS
Trigger: AGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTC...AACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: EDLVCVPMVPRWVPLLGMDPPCP*HRALSS
Trigger: AGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTC...CATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp GTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCCAGCAGCCGCACGGTaGAGCTGTACTCGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: VCRWFRDGSHCWEWVAGFPAAAR*SCTRAP
Trigger: TGGAGCGCGAGTACAGCTGCACCGTGCGGCTGCTGG...GAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR TCA 90 bp TGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCCGCCTGTTCTTGCTCTaGCCCGCCGTGCCCCTGACA +
Preference number: 4 (lower is better)
Translates to: WCVCRWFRDGSHCWEWVARLFLL*PAVPLT
Trigger: TGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGGCG...GGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp GTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: VCRWFRDGSHCWEWVAGFGQHTV*GAVGLI
Trigger: GATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCC...GAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGAGGACCGCACTGGGGTaGAATGGGCACTGTCTCGTA +
Preference number: 4 (lower is better)
Translates to: PRWVPLLGMGSRVPWSTRRTALG*NGHCLV
Trigger: TACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCT...CCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp TGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGG +
Preference number: 4 (lower is better)
Translates to: CVPMVPRWVPLLGMGSRVARLQG*AAHCLR
Trigger: CCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGC...AACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGCGCGGAAGCACATGGTaGACGGAGGCTGGGATCTCA +
Preference number: 4 (lower is better)
Translates to: PMVPRWVPLLGMGSRVPWRGSTW*TEAGIS
Trigger: TGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCG...CCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLDPPCP*HRALSS
Trigger: AGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTC...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp CACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGACTCAGCACAGGTCTCTGGTTCTCTGTTCTTGCTCTaGCCCGCCGTGCCCCTGACA +
Preference number: 4 (lower is better)
Translates to: HSSLRLCRLSCDSAQVSGSLFLL*PAVPLT
Trigger: TGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGAGA...ACCAGAGACCTGTGCTGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGGCTCCAGACTCCTGCTaGTGCCGCTCATCAACCTGC +
Preference number: 4 (lower is better)
Translates to: PMVPRWVPLLGMGSRVPWAPDSC*CRSSTC
Trigger: GCAGGTTGATGAGCGGCAGCAGCAGGAGTCTGGAGC...CCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR GCA 90 bp TGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCCGCGCTCCAGACTCCTaGTGCTGCCGCTCATCAACC +
Preference number: 4 (lower is better)
Translates to: WCVCRWFRDGSHCWEWVARAPDS*CCRSST
Trigger: GGTTGATGAGCGGCAGCAGCAGGAGTCTGGAGCGCG...GGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR GCA 90 bp ATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGCCAGCAGCCGCACGGTaGAGCTGTACTCGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: MRGLGVCADGSAMGPIAGPAAAR*SCTRAP
Trigger: TGGAGCGCGAGTACAGCTGCACCGTGCGGCTGCTGG...CCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
3UTR CAA 72 bp GACTCCTTCTCCTCCTCAATGCTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGCATCAGCTCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: DSFSSSMLHVAP*ICRESSISSRL
Trigger: CAGCCTGGAGCTGATGCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAGCATTGAGGAGGAGAAGGAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR TCA 90 bp TGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCCGCGGAAGCACATGGTaGACGGAGGCTGGGATCTCA +
Preference number: 4 (lower is better)
Translates to: WCVCRWFRDGSHCWEWVARGSTW*TEAGIS
Trigger: TGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCG...GGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp TTTCGGGAAAAATTGGAACTTGGAGCTGTAGCCTTCAGGGTGCTTTCCCGGGTCCGGGCGGCGCGGCGCTaGCCTGGATGGTGCAGGTGT +
Preference number: 4 (lower is better)
Translates to: FREKLELGAVAFRVLSRVRAARR*PGWCRC
Trigger: ACACCTGCACCATCCAGGTCAGCGCCGCGCCGCCCG...GACCCGGGAAAGCACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCCCGAAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS-3UTR GCA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp AGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: RGLGVCADGSAMGPIAGNVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...ATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: WCVCRWFRDGSHCWEWVACCLPG*FSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCA...GGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: LVCVPMVPRWVPLLGMGSGQHTV*GAVGLI
Trigger: GATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCC...GCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp ATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGATCAGCTCCAGGCTGTaGTCGGCTACAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: MRGLGVCADGSAMGPIAGISSRL*SATGVG
Trigger: GCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGAT...CCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGACTCAGCACAGGTCTCTGGTCTCTTCTTCGTGTCCTaGGGACGCTGCTCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: HSSLRLCRLSCDSAQVSGLFFVS*GRCSVV
Trigger: CACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAG...ACCAGAGACCTGTGCTGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp CACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGACTCAGCACAGGTCTCTGGTAGGACCGCACTGGGGTaGAATGGGCACTGTCTCGTA +
Preference number: 4 (lower is better)
Translates to: HSSLRLCRLSCDSAQVSGRTALG*NGHCLV
Trigger: TACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCT...ACCAGAGACCTGTGCTGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGAAGAGGACCGCACTaGGGTGGAATGGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: WCVCRWFRDGSHCWEWVAGRGPH*GGMGTV
Trigger: GACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCC...GGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGG +
Preference number: 4 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVARLQG*AAHCLR
Trigger: CCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGC...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGG +
Preference number: 4 (lower is better)
Translates to: GMGSRVPWSTRLVIGRSHARLQG*AAHCLR
Trigger: CCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGC...ATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGG +
Preference number: 4 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHARLQG*AAHCLR
Trigger: CCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGC...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
3UTR CAA 72 bp TTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATaGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACC +
Preference number: 4 (lower is better)
Translates to: LVCVPMVPRWVP*LGMGSRVPWST
Trigger: GGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp TTTGTGAAACCTTCCTGTCTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: FVKPSCLARKPFLPAHSPLAAPV*SWHWTP
Trigger: TGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAG...GGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAGACAGGAAGGTTTCACAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
CDS-3UTR TCA 90 bp AGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCCACCTGTTCTTGCTCTaGCCCGCCGTGCCCCTGACA +
Preference number: 4 (lower is better)
Translates to: SHERTWCVCRWFRDGSHCHLFLL*PAVPLT
Trigger: TGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGGTG...GCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR TCA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGAGCAGGCTCACCACTaGGCGGATTTTGCAGGCAAA +
Preference number: 4 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSREQAHH*ADFAGK
Trigger: TTTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTC...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCCCAGACTCCTGCTGCTaGCGCTCATCAACCTGCTCA +
Preference number: 4 (lower is better)
Translates to: WCVCRWFRDGSHCWEWVAPDSCC*RSSTCS
Trigger: TGAGCAGGTTGATGAGCGGCAGCAGCAGGAGTCTGG...GGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR GCA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHGQHTV*GAVGLI
Trigger: GATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCC...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATATCAGCTCCAGGCTGTaGTCGGCTACAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: GMGSRVPWSTRLVIGRSHISSRL*SATGVG
Trigger: GCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGAT...ATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGAGAACAAATTGCTGCTaGACACTGTGCGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: PRWVPLLGMGSRVPWSTRRTNCC*TLCGLG
Trigger: GCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCT...CCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGACTCAGCACAGGTCTCTGGTGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGG +
Preference number: 4 (lower is better)
Translates to: HSSLRLCRLSCDSAQVSGDAAQS*AMGYRR
Trigger: CCTTCTATAACCCATGGCCCACGACTGAGCAGCGTC...ACCAGAGACCTGTGCTGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGAGGACCGCACTGGGGTaGAATGGGCACTGTCTCGTA +
Preference number: 4 (lower is better)
Translates to: GLGVCADGSAMGPIAGNGRTALG*NGHCLV
Trigger: TACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCT...CCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp AGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGGAAGAGGACCGCACTaGGGTGGAATGGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: RTWCVCRWFRDGSHCWEWGRGPH*GGMGTV
Trigger: GACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCC...CCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACTCTCTGTTCTTGCTCTaGCCCGCCGTGCCCCTGACA +
Preference number: 4 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHSLFLL*PAVPLT
Trigger: TGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGAGA...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp AGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGCCAGACTCCTGCTGCTaGCGCTCATCAACCTGCTCA +
Preference number: 4 (lower is better)
Translates to: RTWCVCRWFRDGSHCWEWPDSCC*RSSTCS
Trigger: TGAGCAGGTTGATGAGCGGCAGCAGCAGGAGTCTGG...CCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR GCA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCCGCGCTCCAGACTCCTaGTGCTGCCGCTCATCAACC +
Preference number: 4 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLRAPDS*CCRSST
Trigger: GGTTGATGAGCGGCAGCAGCAGGAGTCTGGAGCGCG...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGTCCAACCAATGCCGCTaGTTATCTGGGTCCACAAAA +
Preference number: 4 (lower is better)
Translates to: PRWVPLLGMGSRVPWSTRSNQCR*LSGSTK
Trigger: TTTTGTGGACCCAGATAAGCAGCGGCATTGGTTGGA...CCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp CCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGCTCCATTACTTCCTTTaGGACCCGGCCACTGTATCG +
Preference number: 4 (lower is better)
Translates to: PMVPRWVPLLGMGSRVPWLHYFL*DPATVS
Trigger: CGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAG...CCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCATCAGCTCCAGGCTGTaGTCGGCTACAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLISSRL*SATGVG
Trigger: GCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGAT...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACTGCACTCTCTGTTCTTaGTCTGACCCGCCGTGCCCC +
Preference number: 4 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHCTLCS*SDPPCP
Trigger: GGGGCACGGCGGGTCAGAGCAAGAACAGAGAGTGCA...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCTGGCATCTCTCTGGATaGTGCAGGTGTACTCGCTGT +
Preference number: 4 (lower is better)
Translates to: VCRWFRDGSHCWEWVAGFWHLSG*CRCTRC
Trigger: ACAGCGAGTACACCTGCACCATCCAGAGAGATGCCA...GAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR CCA 90 bp CCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGCCTTTGGCATCTCTCTaGATGGTGCAGGTGTACTCG +
Preference number: 4 (lower is better)
Translates to: PMVPRWVPLLGMGSRVPWPLASL*MVQVYS
Trigger: CGAGTACACCTGCACCATCCAGAGAGATGCCAAAGG...CCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR CCA 90 bp CCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGTGCTCTGTGTATTTCTaGCGGCTCCCGTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: PRWVPLLGMGSRVPWSTRCSVYF*RLPFDL
Trigger: AAGATCAAACGGGAGCCGCCAGAAATACACAGAGCA...CCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp TGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGG +
Preference number: 4 (lower is better)
Translates to: WVPLLGMGSRVPWSTRLVDAAQS*AMGYRR
Trigger: CCTTCTATAACCCATGGCCCACGACTGAGCAGCGTC...AACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GCATACTGTAACAAGACAAGCACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGGGAAGAGGACCGCACTaGGGTGGAATGGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: AYCNKTSTAPCGSAGSRVGRGPH*GGMGTV
Trigger: GACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCC...CACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTGCTTGTCTTGTTACAGTATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: LSHERTWCVCRWFRDGSHLAAPV*SWHWTP
Trigger: TGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAG...ATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCTGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: HWEMVLGSLHKTAMEAGPDPPCP*HRALSS
Trigger: AGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTC...AGGGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCAGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: GENDLKILGQMLEMARIADPPCP*HRALSS
Trigger: AGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTC...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp AGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: RSHTNCCWYGNDQIGLDPDPPCP*HRALSS
Trigger: AGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTC...CGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp CCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCT +
Preference number: 4 (lower is better)
Translates to: PVYRALAYIPFFCWERTLDPPCP*HRALSS
Trigger: AGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTC...CAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp ATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGGAGCAGGCTCACCACTaGGCGGATTTTGCAGGCAAA +
Preference number: 4 (lower is better)
Translates to: MRGLGVCADGSAMGPIAGEQAHH*ADFAGK
Trigger: TTTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTC...CCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTCTCTGTTCTTGCTCTaGCCCGCCGTGCCCCTGACA +
Preference number: 4 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLSLFLL*PAVPLT
Trigger: TGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGAGA...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp ACTTCCTTTGCGACCCGGCCACTGTATCGGAACCGGCTCCCCTTAAAGAACAAACGCGCTCCAGACTCCTaGTGCTGCCGCTCATCAACC +
Preference number: 4 (lower is better)
Translates to: TSFATRPLYRNRLPLKNKRAPDS*CCRSST
Trigger: GGTTGATGAGCGGCAGCAGCAGGAGTCTGGAGCGCG...TTTGTTCTTTAAGGGGAGCCGGTTCCGATACAGTGGCCGGGTCGCAAAGGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR GCA 90 bp GGGTCAGATGTTGGAAATGGCACGGATCGCAGCACTGTTAGGACTCTAGACACACCAGCAGCCGCACGGTaGAGCTGTACTCGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: GSDVGNGTDRSTVRTLDTPAAAR*SCTRAP
Trigger: TGGAGCGCGAGTACAGCTGCACCGTGCGGCTGCTGG...TGTGTCTAGAGTCCTAACAGTGCTGCGATCCGTGCCATTTCCAACATCTGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp TTTGTGAAACCTTCCTGTCTGGCGAGGAAGCCATTCCTGCCTGCCCACAGCCCCACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTG +
Preference number: 4 (lower is better)
Translates to: FVKPSCLARKPFLPAHSPTFIAV*PAASHV
Trigger: CACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGT...GGGGCTGTGGGCAGGCAGGAATGGCTTCCTCGCCAGACAGGAAGGTTTCACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
CDS-3UTR GCA 90 bp CCGGAACCCACTGGCACCAGTGAGAAAATTGCAGGGTACAGAGGACAACAGTCTGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: PEPTGTSEKIAGYRGQQSGQHTV*GAVGLI
Trigger: GATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCC...AGACTGTTGTCCTCTGTACCCTGCAATTTTCTCACTGGTGCCAGTGGGTTCCGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
CDS-3UTR CCA 90 bp GTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCAGTAGGTTCAGGTGGTaGCAAAGGAGGTCAAACAGG +
Preference number: 4 (lower is better)
Translates to: VCRWFRDGSHCWEWVAGFSRFRW*QRRSNR
Trigger: CCTGTTTGACCTCCTTTGCCACCACCTGAACCTACT...GAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp AGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGG +
Preference number: 4 (lower is better)
Translates to: RTWCVCRWFRDGSHCWEWDAAQS*AMGYRR
Trigger: CCTTCTATAACCCATGGCCCACGACTGAGCAGCGTC...CCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATCTCTTCTTCGTGTCCTaGGGACGCTGCTCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: GMGSRVPWSTRLVIGRSHLFFVS*GRCSVV
Trigger: CACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAG...ATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGAGATCCCTTTTGATCTaGAGGAAGACTAAGTACCTG +
Preference number: 4 (lower is better)
Translates to: PRWVPLLGMGSRVPWSTRRSLLI*RKTKYL
Trigger: CAGGTACTTAGTCTTCCTTCAGATCAAAAGGGATCT...CCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGCTGGTGTTTGACCACTaGGTTCGGTCTTGTGAATCT +
Preference number: 4 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSRLVFDH*VRSCES
Trigger: AGATTCACAAGACCGAACTCAGTGGTCAAACACCAG...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGGATGTTGCTGGTGTTTaGCCACTGAGTTCGGTCTTG +
Preference number: 4 (lower is better)
Translates to: GLGVCADGSAMGPIAGNGDVAGV*PLSSVL
Trigger: CAAGACCGAACTCAGTGGTCAAACACCAGCAACATC...CCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp ATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCGATGTTGCTGGTGTTTaGCCACTGAGTTCGGTCTTG +
Preference number: 4 (lower is better)
Translates to: MVPRWVPLLGMGSRVPWSDVAGV*PLSSVL
Trigger: CAAGACCGAACTCAGTGGTCAAACACCAGCAACATC...GGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp TCTCGTGTGACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: SRVTQHRSLVTVLWDISDLAAPV*SWHWTP
Trigger: TGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAG...GTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGTCACACGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp GTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGAGCAGGCTCACCACTaGGCGGATTTTGCAGGCAAA +
Preference number: 4 (lower is better)
Translates to: VMRGLGVCADGSAMGPIAEQAHH*ADFAGK
Trigger: TTTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTC...AGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp ACAAGGCGGCATCCGATGTTTTACAGAGAAGACGGCCGTGGTAGAGATCCCTTTCGCGCTCCAGACTCCTaGTGCTGCCGCTCATCAACC +
Preference number: 4 (lower is better)
Translates to: TRRHPMFYREDGRGRDPFRAPDS*CCRSST
Trigger: GGTTGATGAGCGGCAGCAGCAGGAGTCTGGAGCGCG...AAAGGGATCTCTACCACGGCCGTCTTCTCTGTAAAACATCGGATGCCGCCTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS-3UTR GCA 90 bp ATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGCATCTCTCTGGATGGTaGAGGTGTACTCGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: MRGLGVCADGSAMGPIAGHLSGW*RCTRCR
Trigger: ACGACAGCGAGTACACCTGCACCATCCAGAGAGATG...CCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR GCA 90 bp GGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGCCACATTTCCAGAGGTaGTTGCAGGCTTCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: GLGVCADGSAMGPIAGNGPHFQR*LQASGV
Trigger: AACTCCAGAAGCCTGCAAGCACCTCTGGAAATGTGG...CCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp GAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGCTCCATTACTTCCTTTaGGACCCGGCCACTGTATCG +
Preference number: 4 (lower is better)
Translates to: EDLVCVPMVPRWVPLLGMLHYFL*DPATVS
Trigger: CGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAG...CATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TCTCGTGTGACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: SRVTQHRSLVTVLWDISDCCLPG*FSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCA...GTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGTCACACGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTG +
Preference number: 4 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVTFIAV*PAASHV
Trigger: CACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGT...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTG +
Preference number: 4 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHTFIAV*PAASHV
Trigger: CACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGT...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGACACTGTATCAGCTCCAGGCTGTaGTCGGCTACAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: LEAMKGQRRDYHSLHRHCISSRL*SATGVG
Trigger: GCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGAT...ACAGTGTCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CCACTGTTTTCTGGTCCCAGGAGTGTGCCCTTTGACTGTCCTTTACGTGAGTCCTGCACTCTCTGTTCTTaGTCTGACCCGCCGTGCCCC +
Preference number: 4 (lower is better)
Translates to: PLFSGPRSVPFDCPLRESCTLCS*SDPPCP
Trigger: GGGGCACGGCGGGTCAGAGCAAGAACAGAGAGTGCA...GGACTCACGTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAGAAAACAGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTGACACTGTGCGGACTTaGCTTGACTTTTCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: WVPLLGMGSRVPWSTRLVDTVRT*LDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTC...AACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCAGAACAAATTGCTGCTaGACACTGTGCGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: MVPRWVPLLGMGSRVPWSRTNCC*TLCGLG
Trigger: GCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCT...GGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp AGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGG +
Preference number: 4 (lower is better)
Translates to: SHERTWCVCRWFRDGSHCDAAQS*AMGYRR
Trigger: CCTTCTATAACCCATGGCCCACGACTGAGCAGCGTC...GCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp AGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGATGTTGCTGGTGTTTaGCCACTGAGTTCGGTCTTG +
Preference number: 4 (lower is better)
Translates to: RTWCVCRWFRDGSHCWEWDVAGV*PLSSVL
Trigger: CAAGACCGAACTCAGTGGTCAAACACCAGCAACATC...CCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGACACTGTCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: LEAMKGQRRDYHSLHRHCLAAPV*SWHWTP
Trigger: TGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAG...ACAGTGTCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TTCTTCTATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACCATCTGTTCTTGCTCTaGCCCGCCGTGCCCCTGACA +
Preference number: 4 (lower is better)
Translates to: FFYACIIRGVLGWQSMVHHLFLL*PAVPLT
Trigger: TGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGATG...GTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATAGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133898.8
CDS-3UTR GCA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACCATCTCTCTGGATGGTaGAGGTGTACTCGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHHLSGW*RCTRCR
Trigger: ACGACAGCGAGTACACCTGCACCATCCAGAGAGATG...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp TGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTTCCAACCAATGCCGCTaGTTATCTGGGTCCACAAAA +
Preference number: 4 (lower is better)
Translates to: WVPLLGMGSRVPWSTRLVSNQCR*LSGSTK
Trigger: TTTTGTGGACCCAGATAAGCAGCGGCATTGGTTGGA...AACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp CCCATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCATCAGCTCCAGGCTGTaGTCGGCTACAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: PIGKWFWVAYTKQQWKLAISSRL*SATGVG
Trigger: GCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGAT...GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGATCAGCTCCAGGCTGTaGTCGGCTACAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: ALAYIPFFCWERTLLGSVISSRL*SATGVG
Trigger: GCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGAT...CACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSRGKIGT*SCSLQG
Trigger: ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCC...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGGACACTGTGCGGACTTaGCTTGACTTTTCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: MRGLGVCADGSAMGPIAGDTVRT*LDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTC...CCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp TCTCGTGTGACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACAGGACCGCACTGGGGTaGAATGGGCACTGTCTCGTA +
Preference number: 4 (lower is better)
Translates to: SRVTQHRSLVTVLWDISDRTALG*NGHCLV
Trigger: TACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCT...GTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGTCACACGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GACCCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTGCCATGGTCAAATTGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGG +
Preference number: 4 (lower is better)
Translates to: DPKGGIPIVSAGLCHGQIARLQG*AAHCLR
Trigger: CCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGC...AATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GAGGTCCTGCTTAGTGCTTCCTGGTCCCTTCCAAGGCCGCTGCTCCTTCTCGATTCAGCGTTTTGTCTATaGCTTTCCTTCAGGCCTCCG +
Preference number: 4 (lower is better)
Translates to: EVLLSASWSLPRPLLLLDSAFCL*LSFRPP
Trigger: CGGAGGCCTGAAGGAAAGCCATAGACAAAACGCTGA...ATCGAGAAGGAGCAGCGGCCTTGGAAGGGACCAGGAAGCACTAAGCAGGACCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110593.9
3UTR CAA 72 bp CCTGCTCTGTGTATTTCTGGCGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACTTCCTTTGCGACCCGG +
Preference number: 4 (lower is better)
Translates to: PALCISGGSRLI*ALDSITSFATR
Trigger: CCGGGTCGCAAAGGAAGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATACACAGAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR TCA 90 bp GTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGAGATCCCTTTTGATCTaGAGGAAGACTAAGTACCTG +
Preference number: 4 (lower is better)
Translates to: VCVPMVPRWVPLLGMGSRRSLLI*RKTKYL
Trigger: CAGGTACTTAGTCTTCCTTCAGATCAAAAGGGATCT...CCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GTTGCTGAGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAATGTTCCCGGTTTACACCTGTTCTTGCTCTaGCCCGCCGTGCCCCTGACA +
Preference number: 4 (lower is better)
Translates to: VAEPFSEEPLKKLNVPGLHLFLL*PAVPLT
Trigger: TGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGGTG...TAAACCGGGAACATTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR GCA 90 bp AGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGCTGCTGGACACTGTaGGGACTTGGCTTGACTTTT +
Preference number: 4 (lower is better)
Translates to: SHERTWCVCRWFRDGSHCCCWTL*GLGLTF
Trigger: AAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCA...GCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTATGCTGCTGGACACTGTaGGGACTTGGCTTGACTTTT +
Preference number: 4 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVCCWTL*GLGLTF
Trigger: AAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCA...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp CGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATGCCTTCTCAGGTTGCTGCTGGACACTGTaGGGACTTGGCTTGACTTTT +
Preference number: 4 (lower is better)
Translates to: RVPWSTRLVIGRSHAFSGCCWTL*GLGLTF
Trigger: AAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCA...ACCTGAGAAGGCATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TCTGATCTTCCCGTCTCCCTGCTGAATGCTGGGACCACGGGTATATGCTACCACCTCCATTACTTCCTTTaGGACCCGGCCACTGTATCG +
Preference number: 4 (lower is better)
Translates to: SDLPVSLLNAGTTGICYHLHYFL*DPATVS
Trigger: CGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAG...GTGGTAGCATATACCCGTGGTCCCAGCATTCAGCAGGGAGACGGGAAGATCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CATGTATCCCAGACTGGGATTAACTCACTGACTGAGGATTGCCTTGAACTTCTGGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: HVSQTGINSLTEDCLELLVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...CAGAAGTTCAAGGCAATCCTCAGTCAGTGAGTTAATCCCAGTCTGGGATACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp TATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACAAAATCTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: YACIIRGVLGWQSMVHKICCLPG*FSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCA...GATTTTGTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GCCTCTCTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGAACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTG +
Preference number: 4 (lower is better)
Translates to: ASLEAMKGQRRDYHSLHRTFIAV*PAASHV
Trigger: CACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGT...TCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAGAGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp CGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATGCCTTCTCAGGTATGCCGCTGCTTATCTaGGTCCACAAAACGAATCCC +
Preference number: 4 (lower is better)
Translates to: RVPWSTRLVIGRSHAFSGMPLLI*VHKTNP
Trigger: GGGATTCGTTTTGTGGACCCAGATAAGCAGCGGCAT...ACCTGAGAAGGCATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTATGCCGCTGCTTATCTaGGTCCACAAAACGAATCCC +
Preference number: 4 (lower is better)
Translates to: VMRGLGVCADGSAMGPIAMPLLI*VHKTNP
Trigger: GGGATTCGTTTTGTGGACCCAGATAAGCAGCGGCAT...AGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCGCAGGCTTCTGGAGTTaGGGCAAAATATGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: MVPRWVPLLGMGSRVPWSAGFWS*GKICEN
Trigger: ATTCTCACATATTTTGCCCCAACTCCAGAAGCCTGC...GGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp TTCTATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACAAAGGAAGAGGACCGCACTaGGGTGGAATGGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: FYACIIRGVLGWQSMVHKGRGPH*GGMGTV
Trigger: GACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCC...TTTGTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp AGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCCAAAGAGGAGTCCCATaGTCACAAGGAGCAAACGGA +
Preference number: 4 (lower is better)
Translates to: SHERTWCVCRWFRDGSHCQRGVP*SQGANG
Trigger: TCCGTTTGCTCCTTGTGACCATGGGACTCCTCTTTG...GCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR CCA 90 bp GTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTTCAGCGTTTTGTCTATaGCTTTCCTTCAGGCCTCCG +
Preference number: 4 (lower is better)
Translates to: VMRGLGVCADGSAMGPIASAFCL*LSFRPP
Trigger: CGGAGGCCTGAAGGAAAGCCATAGACAAAACGCTGA...AGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATGCCTTCTCAGGTCTGGTGTTTGACCACTaGGTTCGGTCTTGTGAATCT +
Preference number: 4 (lower is better)
Translates to: RVPWSTRLVIGRSHAFSGLVFDH*VRSCES
Trigger: AGATTCACAAGACCGAACTCAGTGGTCAAACACCAG...ACCTGAGAAGGCATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp AGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: RSHTNCCWYGNDQIGLDPLAAPV*SWHWTP
Trigger: TGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAG...CGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GTTTCTCTGAATGTTTCGGGAAAAATTGGAACTTGGAGCTGTAGCCTTCAGGGTCCAGCAGCCGCACGGTaGAGCTGTACTCGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: VSLNVSGKIGTWSCSLQGPAAAR*SCTRAP
Trigger: TGGAGCGCGAGTACAGCTGCACCGTGCGGCTGCTGG...ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACATTCAGAGAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS-3UTR GCA 90 bp TGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGCCACATTTCCAGAGGTaGTTGCAGGCTTCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: WTLSHERTWCVCRWFRDGPHFQR*LQASGV
Trigger: AACTCCAGAAGCCTGCAAGCACCTCTGGAAATGTGG...CCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TCTCGTGTGACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCTCCATTACTTCCTTTaGGACCCGGCCACTGTATCG +
Preference number: 4 (lower is better)
Translates to: SRVTQHRSLVTVLWDISDLHYFL*DPATVS
Trigger: CGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAG...GTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGTCACACGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTGGGAAGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: GTSLSAYCRFRFVFREWEVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...TTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: PVYRALAYIPFFCWERTLCCLPG*FSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCA...CAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp GACCCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTGCCATGGTCAAATTTGCACTCTCTGTTCTTaGTCTGACCCGCCGTGCCCC +
Preference number: 4 (lower is better)
Translates to: DPKGGIPIVSAGLCHGQICTLCS*SDPPCP
Trigger: GGGGCACGGCGGGTCAGAGCAAGAACAGAGAGTGCA...AATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GGGGTGGAATGGGCACTGTCTCGTAGCGACTCAAGGCCTTCCATGATAGAGATGAGTAGGTTCAGGTGGTaGCAAAGGAGGTCAAACAGG +
Preference number: 4 (lower is better)
Translates to: GVEWALSRSDSRPSMIEMSRFRW*QRRSNR
Trigger: CCTGTTTGACCTCCTTTGCCACCACCTGAACCTACT...CATCTCTATCATGGAAGGCCTTGAGTCGCTACGAGACAGTGCCCATTCCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR CCA 90 bp TCTGATCTTCCCGTCTCCCTGCTGAATGCTGGGACCACGGGTATATGCTACCACAGTAGGTTCAGGTGGTaGCAAAGGAGGTCAAACAGG +
Preference number: 4 (lower is better)
Translates to: SDLPVSLLNAGTTGICYHSRFRW*QRRSNR
Trigger: CCTGTTTGACCTCCTTTGCCACCACCTGAACCTACT...GTGGTAGCATATACCCGTGGTCCCAGCATTCAGCAGGGAGACGGGAAGATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp AGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGTGCTTGCAGGCTTCTaGAGTTGGGGCAAAATATGT +
Preference number: 4 (lower is better)
Translates to: RGLGVCADGSAMGPIAGNVLAGF*SWGKIC
Trigger: ACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCAC...ATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATGTGCTTGCAGGCTTCTaGAGTTGGGGCAAAATATGT +
Preference number: 4 (lower is better)
Translates to: GMGSRVPWSTRLVIGRSHVLAGF*SWGKIC
Trigger: ACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCAC...ATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCGACACTGTGCGGACTTaGCTTGACTTTTCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLDTVRT*LDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTC...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATAGAACAAATTGCTGCTaGACACTGTGCGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: LSHERTWCVCRWFRDGSHRTNCC*TLCGLG
Trigger: GCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCT...ATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp AGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGCTCTGTGTATTTCTaGCGGCTCCCGTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: SHERTWCVCRWFRDGSHCCSVYF*RLPFDL
Trigger: AAGATCAAACGGGAGCCGCCAGAAATACACAGAGCA...GCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GCATACTGTAACAAGACAAGCACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGTGCTCTGTGTATTTCTaGCGGCTCCCGTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: AYCNKTSTAPCGSAGSRVCSVYF*RLPFDL
Trigger: AAGATCAAACGGGAGCCGCCAGAAATACACAGAGCA...CACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTGCTTGTCTTGTTACAGTATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCCTCTTCTTCGTGTCCTaGGGACGCTGCTCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: QSISLYPFLLLGKNPARLLFFVS*GRCSVV
Trigger: CACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAG...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGG +
Preference number: 4 (lower is better)
Translates to: VAFNGCHILNVDMVLPQAARLQG*AAHCLR
Trigger: CCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGC...TGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGCAAAGAGGAGTCCCATaGTCACAAGGAGCAAACGGA +
Preference number: 4 (lower is better)
Translates to: WTLSHERTWCVCRWFRDGQRGVP*SQGANG
Trigger: TCCGTTTGCTCCTTGTGACCATGGGACTCCTCTTTG...CCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR CCA 90 bp GTTTCTCTGAATGTTTCGGGAAAAATTGGAACTTGGAGCTGTAGCCTTCAGGGTGGCGCGGCGCTGACCTaGATGGTGCAGGTGTACTCG +
Preference number: 4 (lower is better)
Translates to: VSLNVSGKIGTWSCSLQGGAALT*MVQVYS
Trigger: CGAGTACACCTGCACCATCCAGGTCAGCGCCGCGCC...ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACATTCAGAGAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
3UTR CAA 72 bp ACCATCCCTGCTCTGTGTATTTCTGGCGGCTCCCGTTaGATCTTGGCACTGGACTCCATTACTTCCTTTGCG +
Preference number: 4 (lower is better)
Translates to: TIPALCISGGSR*ILALDSITSFA
Trigger: CGCAAAGGAAGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAGAAATACACAGAGCAGGGATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR TCA 90 bp CATGTATCCCAGACTGGGATTAACTCACTGACTGAGGATTGCCTTGAACTTCTGCGCGGAAGCACATGGTaGACGGAGGCTGGGATCTCA +
Preference number: 4 (lower is better)
Translates to: HVSQTGINSLTEDCLELLRGSTW*TEAGIS
Trigger: TGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCG...CAGAAGTTCAAGGCAATCCTCAGTCAGTGAGTTAATCCCAGTCTGGGATACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCCTGGTGTTTGACCACTaGGTTCGGTCTTGTGAATCT +
Preference number: 4 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLLVFDH*VRSCES
Trigger: AGATTCACAAGACCGAACTCAGTGGTCAAACACCAG...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: FPVYRALAYIPFFCWERTLAAPV*SWHWTP
Trigger: TGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAG...GGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp CCACTGTTTTCTGGTCCCAGGAGTGTGCCCTTTGACTGTCCTTTACGTGAGTCCCCACATTTCCAGAGGTaGTTGCAGGCTTCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: PLFSGPRSVPFDCPLRESPHFQR*LQASGV
Trigger: AACTCCAGAAGCCTGCAAGCACCTCTGGAAATGTGG...GGACTCACGTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAGAAAACAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTGTGTCCTGGGGACGCTaGTCAGTCGTGGGCCATGGG +
Preference number: 4 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETVSWGR*SVVGHG
Trigger: CCCATGGCCCACGACTGAGCAGCGTCCCCAGGACAC...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAATCAGCTCCAGGCTGTaGTCGGCTACAGGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: AFNGCHILNVDMVLPQATISSRL*SATGVG
Trigger: GCCCACCCCTGTAGCCGAGCACAGCCTGGAGCTGAT...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TTCTTCTATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACTGGCATCTCTCTGGATaGTGCAGGTGTACTCGCTGT +
Preference number: 4 (lower is better)
Translates to: FFYACIIRGVLGWQSMVHWHLSG*CRCTRC
Trigger: ACAGCGAGTACACCTGCACCATCCAGAGAGATGCCA...GTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATAGAAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp AGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: RTWCVCRWFRDGSHCWEWGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...CCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CTGCTCAGTCGTGGGCCATGGGTTATAGAAGGACAGCTGCGGCTAGGGACCATCGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: LLSRGPWVIEGQLRLGTIGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...GATGGTCCCTAGCCGCAGCTGTCCTTCTATAACCCATGGCCCACGACTGAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR CCA 90 bp GACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: DLVCVPMVPRWVPLLGMGGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...ACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHGKIGT*SCSLQG
Trigger: ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCC...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVGKIGT*SCSLQG
Trigger: ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCC...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp TGTCTGCGGGGCTGTAGGCCTCATCCGCTATCACAGCGACACGTTCATTGCTGTGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: CLRGCRPHPLSQRHVHCCGKIGT*SCSLQG
Trigger: ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCC...ACAGCAATGAACGTGTCGCTGTGATAGCGGATGAGGCCTACAGCCCCGCAGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR CCA 90 bp AGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGCAGGCTTCTGGAGTTaGGGCAAAATATGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: RGLGVCADGSAMGPIAGNAGFWS*GKICEN
Trigger: ATTCTCACATATTTTGCCCCAACTCCAGAAGCCTGC...ATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp TTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATGTGCTTGCAGGCTTCTaGAGTTGGGGCAAAATATGT +
Preference number: 4 (lower is better)
Translates to: LSHERTWCVCRWFRDGSHVLAGF*SWGKIC
Trigger: ACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCAC...ATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GCCTCTCTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGAGACACTGTGCGGACTTaGCTTGACTTTTCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: ASLEAMKGQRRDYHSLHRDTVRT*LDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTC...TCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAGAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGGGAAGAGGACCGCACTaGGGTGGAATGGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: LQSISLYPFLLLGKNPARGRGPH*GGMGTV
Trigger: GACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCC...CCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CATGTATCCCAGACTGGGATTAACTCACTGACTGAGGATTGCCTTGAACTTCTGGGAAGAGGACCGCACTaGGGTGGAATGGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: HVSQTGINSLTEDCLELLGRGPH*GGMGTV
Trigger: GACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCC...CAGAAGTTCAAGGCAATCCTCAGTCAGTGAGTTAATCCCAGTCTGGGATACATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TGGCAGTACTTCTTGATCTTGGTATCAGATGACACACATCACTGCTGGTTGGTTCGCGGAAGCACATGGTaGACGGAGGCTGGGATCTCA +
Preference number: 4 (lower is better)
Translates to: WQYFLILVSDDTHHCWLVRGSTW*TEAGIS
Trigger: TGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCG...AACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAAGAAGTACTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp AATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGCGCGGAAGCACATGGTaGACGGAGGCTGGGATCTCA +
Preference number: 4 (lower is better)
Translates to: NVPGLQSISLYPFLLLGKRGSTW*TEAGIS
Trigger: TGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCG...CTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp ACTGGACTCCATTACTTCCTTTGCGACCCGGCCACTGTATCGGAACCGGCTCCCCTGAGTTCGGTCTTGTaGATCTCAGCAATTTTCTTT +
Preference number: 4 (lower is better)
Translates to: TGLHYFLCDPATVSEPAPLSSVL*ISAIFF
Trigger: AAAGAAAATTGCTGAGATTCACAAGACCGAACTCAG...GGGAGCCGGTTCCGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGTCCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR TCA 90 bp CCACTGTTTTCTGGTCCCAGGAGTGTGCCCTTTGACTGTCCTTTACGTGAGTCCCTGGTGTTTGACCACTaGGTTCGGTCTTGTGAATCT +
Preference number: 4 (lower is better)
Translates to: PLFSGPRSVPFDCPLRESLVFDH*VRSCES
Trigger: AGATTCACAAGACCGAACTCAGTGGTCAAACACCAG...GGACTCACGTAAAGGACAGTCAAAGGGCACACTCCTGGGACCAGAAAACAGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TGTCTGCGGGGCTGTAGGCCTCATCCGCTATCACAGCGACACGTTCATTGCTGTACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAA +
Preference number: 4 (lower is better)
Translates to: CLRGCRPHPLSQRHVHCCTLLFP*RTTNPK
Trigger: TTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGT...ACAGCAATGAACGTGTCGCTGTGATAGCGGATGAGGCCTACAGCCCCGCAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR TCA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAA +
Preference number: 4 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVTLLFP*RTTNPK
Trigger: TTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGT...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGCGCGGAAGCACATGGTaGACGGAGGCTGGGATCTCN +
Preference number: 4 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRRGSTW*TEAGIS
Trigger: NGAGATCCCAGCCTCCGTTCACCATGTGCTTCCGCG...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000133898.8
CDS-3UTR GCA 90 bp ATCCGATGTTTTACAGAGAAGACGGCCGTGGTAGAGATCCCTTTTGATCTGAAGCCAGACTCCTGCTGCTaGCGCTCATCAACCTGCTCA +
Preference number: 4 (lower is better)
Translates to: IRCFTEKTAVVEIPFDLKPDSCC*RSSTCS
Trigger: TGAGCAGGTTGATGAGCGGCAGCAGCAGGAGTCTGG...CTTCAGATCAAAAGGGATCTCTACCACGGCCGTCTTCTCTGTAAAACATCGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS-3UTR GCA 90 bp GCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGCTCCATTACTTCCTTTaGGACCCGGCCACTGTATCG +
Preference number: 4 (lower is better)
Translates to: ALAYIPFFCWERTLLGSVLHYFL*DPATVS
Trigger: CGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAG...CACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp AATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: NVPGLQSISLYPFLLLGKCCLPG*FSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCA...CTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TGGCAGTACTTCTTGATCTTGGTATCAGATGACACACATCACTGCTGGTTGGTTTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: WQYFLILVSDDTHHCWLVCCLPG*FSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCA...AACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAAGAAGTACTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTG +
Preference number: 4 (lower is better)
Translates to: PVYRALAYIPFFCWERTLTFIAV*PAASHV
Trigger: CACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGT...CAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETGQHTV*GAVGLI
Trigger: GATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCC...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GTTGTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGGGCAGCACACTGTCTaGGGGGCTGTAGGCCTCATC +
Preference number: 4 (lower is better)
Translates to: VVAFNGCHILNVDMVLPQGQHTV*GAVGLI
Trigger: GATGAGGCCTACAGCCCCGCAGACAGTGTGCTGCCC...CTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAACAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGTGGCATCTCTCTGGATaGTGCAGGTGTACTCGCTGT +
Preference number: 4 (lower is better)
Translates to: ALAYIPFFCWERTLLGSVWHLSG*CRCTRC
Trigger: ACAGCGAGTACACCTGCACCATCCAGAGAGATGCCA...CACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR CCA 90 bp TTCTTCTATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACAGTAGGTTCAGGTGGTaGCAAAGGAGGTCAAACAGG +
Preference number: 4 (lower is better)
Translates to: FFYACIIRGVLGWQSMVHSRFRW*QRRSNR
Trigger: CCTGTTTGACCTCCTTTGCCACCACCTGAACCTACT...GTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATAGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: WTLSHERTWCVCRWFRDGGKIGT*SCSLQG
Trigger: ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCC...CCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GACCCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTGCCATGGTCAAATTGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGG +
Preference number: 4 (lower is better)
Translates to: DPKGGIPIVSAGLCHGQIDAAQS*AMGYRR
Trigger: CCTTCTATAACCCATGGCCCACGACTGAGCAGCGTC...AATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCTTCTTCGTGTCCTaGGGACGCTGCTCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: LQSISLYPFLLLGKNPARLFFVS*GRCSVV
Trigger: CACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAG...CCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGTTCATAGTGAGGACCGCACTGGGGTaGAATGGGCACTGTCTCGTA +
Preference number: 4 (lower is better)
Translates to: TNCCWYGNDQIGLDPFIVRTALG*NGHCLV
Trigger: TACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCT...CACTATGAACGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAGGAAGAGGACCGCACTaGGGTGGAATGGGCACTGTC +
Preference number: 4 (lower is better)
Translates to: AFNGCHILNVDMVLPQATGRGPH*GGMGTV
Trigger: GACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCC...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTTTGCTCGGCTACAGGGGTaGGCAGCACACTGTCTGCGG +
Preference number: 4 (lower is better)
Translates to: ERKEETQNTAKPDENRNFARLQG*AAHCLR
Trigger: CCGCAGACAGTGTGCTGCCCACCCCTGTAGCCGAGC...AAAGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp CATGTATCCCAGACTGGGATTAACTCACTGACTGAGGATTGCCTTGAACTTCTGCTGCTTAGTGCTTCCTaGTCCCTTCCAAGGCCGCTG +
Preference number: 4 (lower is better)
Translates to: HVSQTGINSLTEDCLELLLLSAS*SLPRPL
Trigger: CAGCGGCCTTGGAAGGGACCAGGAAGCACTAAGCAG...CAGAAGTTCAAGGCAATCCTCAGTCAGTGAGTTAATCCCAGTCTGGGATACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133898.8
3UTR CAA 72 bp TGGTATCAGATGACACACATCACTGCTGGTTGGTTGTaGGAGCACCCTGCCCATTGGGAAATGGTTCTGGGT +
Preference number: 4 (lower is better)
Translates to: WYQMTHITAGWL*EHPAHWEMVLG
Trigger: ACCCAGAACCATTTCCCAATGGGCAGGGTGCTCCAACAACCAACCAGCAGTGATGTGTGTCATCTGATACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGAGATCCCTTTTGATCTaGAGGAAGACTAAGTACCTG +
Preference number: 4 (lower is better)
Translates to: WTLSHERTWCVCRWFRDGRSLLI*RKTKYL
Trigger: CAGGTACTTAGTCTTCCTTCAGATCAAAAGGGATCT...CCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GCATACTGTAACAAGACAAGCACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGCTGAGTTCGGTCTTGTaGATCTCAGCAATTTTCTTT +
Preference number: 4 (lower is better)
Translates to: AYCNKTSTAPCGSAGSRVLSSVL*ISAIFF
Trigger: AAAGAAAATTGCTGAGATTCACAAGACCGAACTCAG...CACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTGCTTGTCTTGTTACAGTATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp GGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATCTGAGTTCGGTCTTGTaGATCTCAGCAATTTTCTTT +
Preference number: 4 (lower is better)
Translates to: GMGSRVPWSTRLVIGRSHLSSVL*ISAIFF
Trigger: AAAGAAAATTGCTGAGATTCACAAGACCGAACTCAG...ATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp TGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAA +
Preference number: 4 (lower is better)
Translates to: WTLSHERTWCVCRWFRDGTLLFP*RTTNPK
Trigger: TTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGT...CCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp CCCATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCCACATTTCCAGAGGTaGTTGCAGGCTTCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: PIGKWFWVAYTKQQWKLAPHFQR*LQASGV
Trigger: AACTCCAGAAGCCTGCAAGCACCTCTGGAAATGTGG...GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp TATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACAAAATCTGCTGCTGGACACTGTaGGGACTTGGCTTGACTTTT +
Preference number: 4 (lower is better)
Translates to: YACIIRGVLGWQSMVHKICCWTL*GLGLTF
Trigger: AAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCA...GATTTTGTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp ATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGACCTTTGGCATCTCTCTaGATGGTGCAGGTGTACTCG +
Preference number: 4 (lower is better)
Translates to: ISLYPFLLLGKNPARLSGPLASL*MVQVYS
Trigger: CGAGTACACCTGCACCATCCAGAGAGATGCCAAAGG...TCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR CCA 90 bp GCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGATGCCGCTGCTTATCTaGGTCCACAAAACGAATCCC +
Preference number: 4 (lower is better)
Translates to: ALAYIPFFCWERTLLGSVMPLLI*VHKTNP
Trigger: GGGATTCGTTTTGTGGACCCAGATAAGCAGCGGCAT...CACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GACTACCACTCACTGCATAGACACTGTGTTCTACAGACTGAGGTAGGAGCACCAATGCCGCTGCTTATCTaGGTCCACAAAACGAATCCC +
Preference number: 4 (lower is better)
Translates to: DYHSLHRHCVLQTEVGAPMPLLI*VHKTNP
Trigger: GGGATTCGTTTTGTGGACCCAGATAAGCAGCGGCAT...TGGTGCTCCTACCTCAGTCTGTAGAACACAGTGTCTATGCAGTGAGTGGTAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TTCTATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACAAAATGCCGCTGCTTATCTaGGTCCACAAAACGAATCCC +
Preference number: 4 (lower is better)
Translates to: FYACIIRGVLGWQSMVHKMPLLI*VHKTNP
Trigger: GGGATTCGTTTTGTGGACCCAGATAAGCAGCGGCAT...TTTGTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGACACTGTGCGGACTTaGCTTGACTTTTCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: ALAYIPFFCWERTLLGSVDTVRT*LDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTC...CACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGTTCATAGTGGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGG +
Preference number: 4 (lower is better)
Translates to: TNCCWYGNDQIGLDPFIVDAAQS*AMGYRR
Trigger: CCTTCTATAACCCATGGCCCACGACTGAGCAGCGTC...CACTATGAACGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TGCGGTCTCCCTGAGATGAAAACATGCTCTTGTGTGTTATTGGTGGTAAGAAGTCTCTTCTTCGTGTCCTaGGGACGCTGCTCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: CGLPEMKTCSCVLLVVRSLFFVS*GRCSVV
Trigger: CACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAG...ACTTCTTACCACCAATAACACACAAGAGCATGTTTTCATCTCAGGGAGACCGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCACTCTTCTTCGTGTCCTaGGGACGCTGCTCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: VAFNGCHILNVDMVLPQALFFVS*GRCSVV
Trigger: CACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAG...TGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CAA 72 bp GAGGGAGAAAATGACCTGAAGATTCTGGGTCAGATGTaGGAAATGGCACGGATCGCAGCACTGTTAGGACTC +
Preference number: 4 (lower is better)
Translates to: EGENDLKILGQM*EMARIAALLGL
Trigger: GAGTCCTAACAGTGCTGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTACTTTTCCAGTTTCTCTaGATGTTTCGGGAAAAATTG +
Preference number: 4 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVLFQFL*MFREKL
Trigger: CAATTTTTCCCGAAACATTCAGAGAAACTGGAAAAG...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATCTTTTCCAGTTTCTCTaGATGTTTCGGGAAAAATTG +
Preference number: 4 (lower is better)
Translates to: GMGSRVPWSTRLVIGRSHLFQFL*MFREKL
Trigger: CAATTTTTCCCGAAACATTCAGAGAAACTGGAAAAG...ATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCCTGGTGTTTGACCACTaGGTTCGGTCTTGTGAATCT +
Preference number: 4 (lower is better)
Translates to: QSISLYPFLLLGKNPARLLVFDH*VRSCES
Trigger: AGATTCACAAGACCGAACTCAGTGGTCAAACACCAG...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCTGATGTTGCTGGTGTTTaGCCACTGAGTTCGGTCTTG +
Preference number: 4 (lower is better)
Translates to: HWEMVLGSLHKTAMEAGPDVAGV*PLSSVL
Trigger: CAAGACCGAACTCAGTGGTCAAACACCAGCAACATC...AGGGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp AGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGGATGTTGCTGGTGTTTaGCCACTGAGTTCGGTCTTG +
Preference number: 4 (lower is better)
Translates to: RSHTNCCWYGNDQIGLDPDVAGV*PLSSVL
Trigger: CAAGACCGAACTCAGTGGTCAAACACCAGCAACATC...CGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGGCAAACCATCGCCTaGGGGGACAAAAGTATTGAT +
Preference number: 4 (lower is better)
Translates to: QSISLYPFLLLGKNPARLRQTIA*GDKSID
Trigger: ATCAATACTTTTGTCCCCTCAGGCGATGGTTTGCCT...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR GCA 90 bp TTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCATCTCTCTGGATGGTaGAGGTGTACTCGCTGTCGT +
Preference number: 4 (lower is better)
Translates to: LQSISLYPFLLLGKNPARHLSGW*RCTRCR
Trigger: ACGACAGCGAGTACACCTGCACCATCCAGAGAGATG...CCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
CDS-3UTR GCA 90 bp GACCCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTGCCATGGTCAAATTCCACATTTCCAGAGGTaGTTGCAGGCTTCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: DPKGGIPIVSAGLCHGQIPHFQR*LQASGV
Trigger: AACTCCAGAAGCCTGCAAGCACCTCTGGAAATGTGG...AATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGGGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GACCCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTGCCATGGTCAAATTTGCTGCTGGACACTGTaGGGACTTGGCTTGACTTTT +
Preference number: 4 (lower is better)
Translates to: DPKGGIPIVSAGLCHGQICCWTL*GLGLTF
Trigger: AAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCA...AATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp ACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGTTCATAGTGCTCCATTACTTCCTTTaGGACCCGGCCACTGTATCG +
Preference number: 4 (lower is better)
Translates to: TNCCWYGNDQIGLDPFIVLHYFL*DPATVS
Trigger: CGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAG...CACTATGAACGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACTGCTGTCTGCCCGGCTaGTTCTCACGTGAGGCAGGA +
Preference number: 4 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHCCLPG*FSREAG
Trigger: TCCTGCCTCACGTGAGAAGCAGCCGGGCAGACAGCA...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp TTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCCACTGAGCGGATTTTaGAGGCAAACCATCGCCTGT +
Preference number: 4 (lower is better)
Translates to: LQSISLYPFLLLGKNPARPLSGF*RQTIAC
Trigger: ACAGGCGATGGTTTGCCTGCAAAATCCGCTCAGTGG...CCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp ATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGAAGTAGGTTCAGGTGGTaGCAAAGGAGGTCAAACAGG +
Preference number: 4 (lower is better)
Translates to: ISLYPFLLLGKNPARLSGSRFRW*QRRSNR
Trigger: CCTGTTTGACCTCCTTTGCCACCACCTGAACCTACT...TCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTCTCTTCTTCGTGTCCTaGGGACGCTGCTCAGTCGTG +
Preference number: 4 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETLFFVS*GRCSVV
Trigger: CACGACTGAGCAGCGTCCCCAGGACACGAAGAAGAG...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CAA 72 bp TTGATCTTGGTATCAGATGACACACATCACTGCTGGTaGGTTGTTGGAGCACCCTGCCCATTGGGAAATGGT +
Preference number: 4 (lower is better)
Translates to: LILVSDDTHHCW*VVGAPCPLGNG
Trigger: ACCATTTCCCAATGGGCAGGGTGCTCCAACAACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TTCTTCTATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACAGATCCCTTTTGATCTaGAGGAAGACTAAGTACCTG +
Preference number: 4 (lower is better)
Translates to: FFYACIIRGVLGWQSMVHRSLLI*RKTKYL
Trigger: CAGGTACTTAGTCTTCCTTCAGATCAAAAGGGATCT...GTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATAGAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATCTTTTCCAGTTTCTCTaGATGTTTCGGGAAAAATTG +
Preference number: 4 (lower is better)
Translates to: LSHERTWCVCRWFRDGSHLFQFL*MFREKL
Trigger: CAATTTTTCCCGAAACATTCAGAGAAACTGGAAAAG...ATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGACACTGTACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAA +
Preference number: 4 (lower is better)
Translates to: LEAMKGQRRDYHSLHRHCTLLFP*RTTNPK
Trigger: TTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGT...ACAGTGTCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp ATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGAAGGCAAACCATCGCCTaGGGGGACAAAAGTATTGAT +
Preference number: 4 (lower is better)
Translates to: ISLYPFLLLGKNPARLSGRQTIA*GDKSID
Trigger: ATCAATACTTTTGTCCCCTCAGGCGATGGTTTGCCT...TCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR GCA 90 bp GTTGCTGAGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAATGTTCCCGGTTTATCCAACCAATGCCGCTaGTTATCTGGGTCCACAAAA +
Preference number: 4 (lower is better)
Translates to: VAEPFSEEPLKKLNVPGLSNQCR*LSGSTK
Trigger: TTTTGTGGACCCAGATAAGCAGCGGCATTGGTTGGA...TAAACCGGGAACATTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp TTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCCACATTTCCAGAGGTaGTTGCAGGCTTCTGGAGTT +
Preference number: 4 (lower is better)
Translates to: FPVYRALAYIPFFCWERTPHFQR*LQASGV
Trigger: AACTCCAGAAGCCTGCAAGCACCTCTGGAAATGTGG...GGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp GGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTGGGAACTCCATTACTTCCTTTaGGACCCGGCCACTGTATCG +
Preference number: 4 (lower is better)
Translates to: GTSLSAYCRFRFVFREWELHYFL*DPATVS
Trigger: CGATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAG...TTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp AATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACAGCCCTGTTTCCCACGTTCATTGCTGTCTaGCCGGCTGCTTCTCACGTG +
Preference number: 4 (lower is better)
Translates to: NLLCCIRIEIPVHTALFPTFIAV*PAASHV
Trigger: CACGTGAGAAGCAGCCGGGCAGACAGCAATGAACGT...GGGAAACAGGGCTGTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp TTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCTCCATGGAATGTGCTTaGTCTGCCTCTTCTGGGCTT +
Preference number: 4 (lower is better)
Translates to: FPVYRALAYIPFFCWERTSMECA*SASSGL
Trigger: AAGCCCAGAAGAGGCAGAGCAAGCACATTCCATGGA...GGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp AGCCTTGAGGGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCAAGAACAAATTGCTGCTaGACACTGTGCGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: SLEGENDLKILGQMLEMARTNCC*TLCGLG
Trigger: GCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCT...TGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCCCTCAAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp ACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGTTCATAGTGAGAACAAATTGCTGCTaGACACTGTGCGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: TNCCWYGNDQIGLDPFIVRTNCC*TLCGLG
Trigger: GCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCT...CACTATGAACGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGATGTTGCTGGTGTTTaGCCACTGAGTTCGGTCTTG +
Preference number: 4 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRDVAGV*PLSSVL
Trigger: CAAGACCGAACTCAGTGGTCAAACACCAGCAACATC...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TTGTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGCTGGCGGCTCCCGTTTaGTCTTGGCACTGGACTCCA +
Preference number: 4 (lower is better)
Translates to: LSCHVVYVLDLTQIVAGTLAAPV*SWHWTP
Trigger: TGGAGTCCAGTGCCAAGATCAAACGGGAGCCGCCAG...CGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp AGCCTTGAGGGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCATCCAACCAATGCCGCTaGTTATCTGGGTCCACAAAA +
Preference number: 4 (lower is better)
Translates to: SLEGENDLKILGQMLEMASNQCR*LSGSTK
Trigger: TTTTGTGGACCCAGATAAGCAGCGGCATTGGTTGGA...TGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCCCTCAAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGTGCTGCTGGACACTGTaGGGACTTGGCTTGACTTTT +
Preference number: 4 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRCCWTL*GLGLTF
Trigger: AAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCA...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: QSISLYPFLLLGKNPARLGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp AGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: RSHTNCCWYGNDQIGLDPGKIGT*SCSLQG
Trigger: ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCC...CGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GACCCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTGCCATGGTCAAATTGGAAAAATTGGAACTTaGAGCTGTAGCCTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: DPKGGIPIVSAGLCHGQIGKIGT*SCSLQG
Trigger: ACCCTGAAGGCTACAGCTCCAAGTTCCAATTTTTCC...AATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp AGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGGCAGGCTTCTGGAGTTaGGGCAAAATATGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: RSHTNCCWYGNDQIGLDPAGFWS*GKICEN
Trigger: ATTCTCACATATTTTGCCCCAACTCCAGAAGCCTGC...CGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp ATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGAGCAGGCTTCTGGAGTTaGGGCAAAATATGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: ISLYPFLLLGKNPARLSGAGFWS*GKICEN
Trigger: ATTCTCACATATTTTGCCCCAACTCCAGAAGCCTGC...TCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CCA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGACACTGTGCGGACTTaGCTTGACTTTTCCAGCTTG +
Preference number: 4 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRDTVRT*LDFSSL
Trigger: CAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTC...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp ACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCTGGACCCGTTCATAGTGTGCTCTGTGTATTTCTaGCGGCTCCCGTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: TNCCWYGNDQIGLDPFIVCSVYF*RLPFDL
Trigger: AAGATCAAACGGGAGCCGCCAGAAATACACAGAGCA...CACTATGAACGGGTCCAGGCCTATCTGATCATTTCCGTACCAGCAACAATTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CAA 72 bp AAGGCTTGGTTCTCAATTCCACATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGGGCAAAATATGTGAGA +
Preference number: 4 (lower is better)
Translates to: KAWFSIPHFQRC*QASGVGAKYVR
Trigger: TCTCACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATGTGGAATTGAGAACCAAGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
3UTR CAA 72 bp AGAACAAATTGCTGCTGGACACTGTGCGGACTTGGCTaGACTTTTCCAGCTTGTAGAAGGCTTGGTTCTCAA +
Preference number: 4 (lower is better)
Translates to: RTNCCWTLCGLG*TFPACRRLGSQ
Trigger: TTGAGAACCAAGCCTTCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR TCA 90 bp ATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCAGTGGAAGATCCCTTTTGATCTaGAGGAAGACTAAGTACCTG +
Preference number: 4 (lower is better)
Translates to: ISLYPFLLLGKNPARLSGRSLLI*RKTKYL
Trigger: CAGGTACTTAGTCTTCCTTCAGATCAAAAGGGATCT...TCCACTGAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAA +
Preference number: 4 (lower is better)
Translates to: PVYRALAYIPFFCWERTLTLLFP*RTTNPK
Trigger: TTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGT...CAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR GCA 90 bp GTTAGAAAAATACTTTACCCTCTGAGCTACACATCCTCAGCCCTATGTTTTTATCCAGACTCCTGCTGCTaGCGCTCATCAACCTGCTCA +
Preference number: 4 (lower is better)
Translates to: VRKILYPLSYTSSALCFYPDSCC*RSSTCS
Trigger: TGAGCAGGTTGATGAGCGGCAGCAGCAGGAGTCTGG...ATAAAAACATAGGGCTGAGGATGTGTAGCTCAGAGGGTAAAGTATTTTTCTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp GTTGTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGTCCATGGAATGTGCTTaGTCTGCCTCTTCTGGGCTT +
Preference number: 4 (lower is better)
Translates to: VVAFNGCHILNVDMVLPQSMECA*SASSGL
Trigger: AAGCCCAGAAGAGGCAGAGCAAGCACATTCCATGGA...CTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110593.9
CDS-3UTR CCA 90 bp GCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTGGGAAGCCGGTGGTCTGAGAGCAGGCTTCTGGAGTTaGGGCAAAATATGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: AYCRFRFVFREWEAGGLRAGFWS*GKICEN
Trigger: ATTCTCACATATTTTGCCCCAACTCCAGAAGCCTGC...TCTCAGACCACCGGCTTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAGTGCTTGCAGGCTTCTaGAGTTGGGGCAAAATATGT +
Preference number: 4 (lower is better)
Translates to: AFNGCHILNVDMVLPQATVLAGF*SWGKIC
Trigger: ACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCAC...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TGGCAGTACTTCTTGATCTTGGTATCAGATGACACACATCACTGCTGGTTGGTTGTGCTTGCAGGCTTCTaGAGTTGGGGCAAAATATGT +
Preference number: 4 (lower is better)
Translates to: WQYFLILVSDDTHHCWLVVLAGF*SWGKIC
Trigger: ACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCAC...AACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAAGAAGTACTGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp AATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACAGCCCTGTTTCCCAGAACAAATTGCTGCTaGACACTGTGCGGACTTGGC +
Preference number: 4 (lower is better)
Translates to: NLLCCIRIEIPVHTALFPRTNCC*TLCGLG
Trigger: GCCAAGTCCGCACAGTGTCCAGCAGCAATTTGTTCT...GGGAAACAGGGCTGTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp TGCGGTCTCCCTGAGATGAAAACATGCTCTTGTGTGTTATTGGTGGTAAGAAGTTGCTCTGTGTATTTCTaGCGGCTCCCGTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: CGLPEMKTCSCVLLVVRSCSVYF*RLPFDL
Trigger: AAGATCAAACGGGAGCCGCCAGAAATACACAGAGCA...ACTTCTTACCACCAATAACACACAAGAGCATGTTTTCATCTCAGGGAGACCGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAGACGCTGCTCAGTCGTaGGCCATGGGTTATAGAAGG +
Preference number: 4 (lower is better)
Translates to: VLSCGICFRSHTNCCWYGDAAQS*AMGYRR
Trigger: CCTTCTATAACCCATGGCCCACGACTGAGCAGCGTC...TCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GTTAGAAAAATACTTTACCCTCTGAGCTACACATCCTCAGCCCTATGTTTTTATAGGACCGCACTGGGGTaGAATGGGCACTGTCTCGTA +
Preference number: 4 (lower is better)
Translates to: VRKILYPLSYTSSALCFYRTALG*NGHCLV
Trigger: TACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCT...ATAAAAACATAGGGCTGAGGATGTGTAGCTCAGAGGGTAAAGTATTTTTCTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp CCCATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCTTTTCCAGTTTCTCTaGATGTTTCGGGAAAAATTG +
Preference number: 4 (lower is better)
Translates to: PIGKWFWVAYTKQQWKLALFQFL*MFREKL
Trigger: CAATTTTTCCCGAAACATTCAGAGAAACTGGAAAAG...GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp GTTGCTGAGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAATGTTCCCGGTTTACTGAGTTCGGTCTTGTaGATCTCAGCAATTTTCTTT +
Preference number: 4 (lower is better)
Translates to: VAEPFSEEPLKKLNVPGLLSSVL*ISAIFF
Trigger: AAAGAAAATTGCTGAGATTCACAAGACCGAACTCAG...TAAACCGGGAACATTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTCTGGTGTTTGACCACTaGGTTCGGTCTTGTGAATCT +
Preference number: 4 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETLVFDH*VRSCES
Trigger: AGATTCACAAGACCGAACTCAGTGGTCAAACACCAG...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp AATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAAATAAGTCCAACCAATGCCGCTaGTTATCTGGGTCCACAAAA +
Preference number: 4 (lower is better)
Translates to: NGCHILNVDMVLPQATNKSNQCR*LSGSTK
Trigger: TTTTGTGGACCCAGATAAGCAGCGGCATTGGTTGGA...CTTATTTGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAGCAGGCTTCTGGAGTTaGGGCAAAATATGTGAGAAT +
Preference number: 4 (lower is better)
Translates to: AFNGCHILNVDMVLPQATAGFWS*GKICEN
Trigger: ATTCTCACATATTTTGCCCCAACTCCAGAAGCCTGC...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp GGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGAGTGGGAAAGATCCCTTTTGATCTaGAGGAAGACTAAGTACCTG +
Preference number: 4 (lower is better)
Translates to: GTSLSAYCRFRFVFREWERSLLI*RKTKYL
Trigger: CAGGTACTTAGTCTTCCTTCAGATCAAAAGGGATCT...TTCCCACTCCCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp AGCCTTGAGGGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACTGAGTTCGGTCTTGTaGATCTCAGCAATTTTCTTT +
Preference number: 4 (lower is better)
Translates to: SLEGENDLKILGQMLEMALSSVL*ISAIFF
Trigger: AAAGAAAATTGCTGAGATTCACAAGACCGAACTCAG...TGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCCCTCAAGGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp TTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGAGTTCGGTCTTGTaGATCTCAGCAATTTTCTTT +
Preference number: 4 (lower is better)
Translates to: FPVYRALAYIPFFCWERTLSSVL*ISAIFF
Trigger: AAAGAAAATTGCTGAGATTCACAAGACCGAACTCAG...GGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp CATGTATCCCAGACTGGGATTAACTCACTGACTGAGGATTGCCTTGAACTTCTGCTGAGTTCGGTCTTGTaGATCTCAGCAATTTTCTTT +
Preference number: 4 (lower is better)
Translates to: HVSQTGINSLTEDCLELLLSSVL*ISAIFF
Trigger: AAAGAAAATTGCTGAGATTCACAAGACCGAACTCAG...CAGAAGTTCAAGGCAATCCTCAGTCAGTGAGTTAATCCCAGTCTGGGATACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR GCA 90 bp AATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAAATAAGGATCTGTCTCTCTCTTaGATCTGTTCTTGCTCTGAC +
Preference number: 4 (lower is better)
Translates to: NGCHILNVDMVLPQATNKDLSLS*ICSCSD
Trigger: GTCAGAGCAAGAACAGATGCAAGAGAGAGACAGATC...CTTATTTGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133898.8
CDS-3UTR CCA 90 bp GTACTGCTGGGGACCAGTCTCTCAGCATATTGCAGATTTAGGTTTGTTTTTAGGGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: VLLGTSLSAYCRFRFVFRGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...CCTAAAAACAAACCTAAATCTGCAATATGCTGAGAGACTGGTCCCCAGCAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: AFNGCHILNVDMVLPQATGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTTTTGCTCTGTGTATTTCTaGCGGCTCCCGTTTGATCTT +
Preference number: 4 (lower is better)
Translates to: ERKEETQNTAKPDENRNFCSVYF*RLPFDL
Trigger: AAGATCAAACGGGAGCCGCCAGAAATACACAGAGCA...AAAGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp CTGAGAGGAAAGAAGAGACACAGAATACGGCAAAACCAGACGAAAACAGAAACTAGATCCCTTTTGATCTaGAGGAAGACTAAGTACCTG +
Preference number: 4 (lower is better)
Translates to: LRGKKRHRIRQNQTKTETRSLLI*RKTKYL
Trigger: CAGGTACTTAGTCTTCCTTCAGATCAAAAGGGATCT...AGTTTCTGTTTTCGTCTGGTTTTGCCGTATTCTGTGTCTCTTCTTTCCTCTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp GTTGTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGGAAGACTAAGTACCTaGTTATTTCCTCTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: VVAFNGCHILNVDMVLPQGRLST*LFPLSG
Trigger: CCCTGAAAGAGGAAATAACCAGGTACTTAGTCTTCC...CTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAACAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CAA 72 bp ACCACGGGTATATGCTACCACACCTGGTTTTGTGTATaGTTTGAAGTCAAATCCAGGGCCTTATACATGTTA +
Preference number: 4 (lower is better)
Translates to: TTGICYHTWFCV*FEVKSRALYML
Trigger: TAACATGTATAAGGCCCTGGATTTGACTTCAAACAATACACAAAACCAGGTGTGGTAGCATATACCCGTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp AATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGCTTTTCCAGTTTCTCTaGATGTTTCGGGAAAAATTG +
Preference number: 4 (lower is better)
Translates to: NVPGLQSISLYPFLLLGKLFQFL*MFREKL
Trigger: CAATTTTTCCCGAAACATTCAGAGAAACTGGAAAAG...CTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR TCA 90 bp GTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCACTTTTCCAGTTTCTCTaGATGTTTCGGGAAAAATTG +
Preference number: 4 (lower is better)
Translates to: VAFNGCHILNVDMVLPQALFQFL*MFREKL
Trigger: CAATTTTTCCCGAAACATTCAGAGAAACTGGAAAAG...TGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAA +
Preference number: 4 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHTLLFP*RTTNPK
Trigger: TTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGT...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CCA 90 bp AAAAGAGTACATTGCTTTGAAGGAAAACGTAACTTAGATTTGGCACACGAAAGGGTGCTTGCAGGCTTCTaGAGTTGGGGCAAAATATGT +
Preference number: 4 (lower is better)
Translates to: KRVHCFEGKRNLDLAHERVLAGF*SWGKIC
Trigger: ACATATTTTGCCCCAACTCCAGAAGCCTGCAAGCAC...CCTTTCGTGTGCCAAATCTAAGTTACGTTTTCCTTCAAAGCAATGTACTCTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp CACTCTAGAAGGCAATCTGCTATGTTGCATAAGAATAGAAATCCCAGTTCACACCTTTTCCAGTTTCTCTaGATGTTTCGGGAAAAATTG +
Preference number: 4 (lower is better)
Translates to: HSRRQSAMLHKNRNPSSHLFQFL*MFREKL
Trigger: CAATTTTTCCCGAAACATTCAGAGAAACTGGAAAAG...GTGTGAACTGGGATTTCTATTCTTATGCAACATAGCAGATTGCCTTCTAGAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR TCA 90 bp AAAAGAGTACATTGCTTTGAAGGAAAACGTAACTTAGATTTGGCACACGAAAGGACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAA +
Preference number: 4 (lower is better)
Translates to: KRVHCFEGKRNLDLAHERTLLFP*RTTNPK
Trigger: TTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGT...CCTTTCGTGTGCCAAATCTAAGTTACGTTTTCCTTCAAAGCAATGTACTCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
3UTR CAA 72 bp AACCTCTGGTCTTTACTAGGATCCCCTCAGTTTGTCTaGTCATGTGGTATATGTTTTAGATCTCACACAAAT +
Preference number: 4 (lower is better)
Translates to: NLWSLLGSPQFV*SCGICFRSHTN
Trigger: ATTTGTGTGAGATCTAAAACATATACCACATGACAAGACAAACTGAGGGGATCCTAGTAAAGACCAGAGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS TCA 90 bp CCGGATCCCGCGAGCCGGCGGGCGGGCGGGCGGGCGGCGCGGCGCTaGCCTGGATGGTGCAGGTGTACTCGCTGTCGTCCAGCAGCCGCA +
Preference number: 5 (lower is better)
Translates to: PDPASRRAGGRAARR*PGWCRCTRCRPAAA
Trigger: TGCGGCTGCTGGACGACAGCGAGTACACCTGCACCATCCAGGTCAGCGCCGCGCCGCCCGCCCGCCCGCCCGCCGGCTCGCGGGATCCGG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS CCA 90 bp TCCCGCGAGCCGGCGGGCGGGCGGGCGGGCGGCGCGGCGCTGACCTaGATGGTGCAGGTGTACTCGCTGTCGTCCAGCAGCCGCACGGTG +
Preference number: 5 (lower is better)
Translates to: SREPAGGRAGGAALT*MVQVYSLSSSSRTV
Trigger: CACCGTGCGGCTGCTGGACGACAGCGAGTACACCTGCACCATCCAGGTCAGCGCCGCGCCGCCCGCCCGCCCGCCCGCCGGCTCGCGGGA
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS CCA 90 bp CAGGTACTGGCCTTTGGCATCTCTCCCGCAGGGGCGCGCGGCGCGTaGTACCAGTGCCCGGCTGAGCTCGGGCTGGGATGCCGCGCGCCG +
Preference number: 5 (lower is better)
Translates to: QVLAFGISPAGARGA*YQCPAELGLGCRAP
Trigger: CGGCGCGCGGCATCCCAGCCCGAGCTCAGCCGGGCACTGGTACCACGCGCCGCGCGCCCCTGCGGGAGAGATGCCAAAGGCCAGTACCTG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS-3UTR CAA 90 bp CACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGACTCAGCACAGGTCTCTGGTCTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: HSSLRLCRLSCDSAQVSGLHVAP*ICRESS
Trigger: GCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAG...ACCAGAGACCTGTGCTGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp TGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: CVPMVPRWVPLLGMGSRVLHVAP*ICRESS
Trigger: GCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAG...AACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS GCA 90 bp TCTGGATGGTGCAGGTGTACTCGCTGTCGTCCAGCAGCCGCACGGTaGAGCTGTACTCGCGCTCCAGACTCCTGCTGCTGCCGCTCATCA +
Preference number: 5 (lower is better)
Translates to: SGWCRCTRCRPAAAR*SCTRAPDSCCCRSS
Trigger: TGATGAGCGGCAGCAGCAGGAGTCTGGAGCGCGAGTACAGCTGCACCGTGCGGCTGCTGGACGACAGCGAGTACACCTGCACCATCCAGA
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000128428.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTACTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVLHVAP*ICRESS
Trigger: GCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAG...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp CCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGACTCCATTACTTCCTTaGCGACCCGGCCACTGTATC +
Preference number: 5 (lower is better)
Translates to: PRWVPLLGMGSRVPWSTRTPLLP*RPGHCI
Trigger: GATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGT...CCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp CACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGACTCAGCACAGGTCTCTGGTACTCCATTACTTCCTTaGCGACCCGGCCACTGTATC +
Preference number: 5 (lower is better)
Translates to: HSSLRLCRLSCDSAQVSGTPLLP*RPGHCI
Trigger: GATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGT...ACCAGAGACCTGTGCTGAGTCACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp CCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACT +
Preference number: 5 (lower is better)
Translates to: PMVPRWVPLLGMGSRVPWGSRLI*ALDSIT
Trigger: AGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCC...CCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GGGTCAGATGTTGGAAATGGCACGGATCGCAGCACTGTTAGGACTCTAGACACACTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: GSDVGNGTDRSTVRTLDTLHVAP*ICRESS
Trigger: GCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAG...TGTGTCTAGAGTCCTAACAGTGCTGCGATCCGTGCCATTTCCAACATCTGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp TGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTACCACTGAGCGGATTTaGCAGGCAAACCATCGCCTG +
Preference number: 5 (lower is better)
Translates to: WVPLLGMGSRVPWSTRLVTTERI*QANHRL
Trigger: CAGGCGATGGTTTGCCTGCAAAATCCGCTCAGTGGT...AACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp TGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTACTCCATTACTTCCTTaGCGACCCGGCCACTGTATC +
Preference number: 5 (lower is better)
Translates to: CVPMVPRWVPLLGMGSRVTPLLP*RPGHCI
Trigger: GATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGT...AACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp ATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTAGCCGGGTTCCTTGGTCCGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACT +
Preference number: 5 (lower is better)
Translates to: MVPRWVPLLGMGSRVPWSGSRLI*ALDSIT
Trigger: AGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCC...GGACCAAGGAACCCGGCTACCCATTCCCAGCAATGGGACCCATCGCGGAACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GACTACCACTCACTGCATAGACACTGTGTTCTACAGACTGAGGTAGGAGCACCACTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: DYHSLHRHCVLQTEVGAPLHVAP*ICRESS
Trigger: GCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAG...TGGTGCTCCTACCTCAGTCTGTAGAACACAGTGTCTATGCAGTGAGTGGTAGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp ATCCGATGTTTTACAGAGAAGACGGCCGTGGTAGAGATCCCTTTTGATCTGAAGGCGGACCCCGCCAACTaGGCCGAGTCTGGGGAGCCG +
Preference number: 5 (lower is better)
Translates to: IRCFTEKTAVVEIPFDLKADPAN*AESGEP
Trigger: CGGCTCCCCAGACTCGGCCAAGTTGGCGGGGTCCGC...CTTCAGATCAAAAGGGATCTCTACCACGGCCGTCTTCTCTGTAAAACATCGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS-3UTR CAA 90 bp GCATACTGTAACAAGACAAGCACAGCTCCCTGCGGCTCTGCAGGCTCTCGTGTGCATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGG +
Preference number: 5 (lower is better)
Translates to: AYCNKTSTAPCGSAGSRVHFQRC*QASGVG
Trigger: CCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATG...CACACGAGAGCCTGCAGAGCCGCAGGGAGCTGTGCTTGTCTTGTTACAGTATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp ATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACT +
Preference number: 5 (lower is better)
Translates to: MRGLGVCADGSAMGPIAGGSRLI*ALDSIT
Trigger: AGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCC...CCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GGAGAAAATGACCTGAAGATTCTGGGTCAGATGTTGGAAATGGCACGGATCGCACTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: GENDLKILGQMLEMARIALHVAP*ICRESS
Trigger: GCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAG...TGCGATCCGTGCCATTTCCAACATCTGACCCAGAATCTTCAGGTCATTTTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GGAATGGGTAGCCGGGTTCCTTGGTCCACCCGGCTAGTTATTGGGAGGAGTCATACCACTGAGCGGATTTaGCAGGCAAACCATCGCCTG +
Preference number: 5 (lower is better)
Translates to: GMGSRVPWSTRLVIGRSHTTERI*QANHRL
Trigger: CAGGCGATGGTTTGCCTGCAAAATCCGCTCAGTGGT...ATGACTCCTCCCAATAACTAGCCGGGTGGACCAAGGAACCCGGCTACCCATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp AGCTGTAGCCTTCAGGGTGCTTTCCCGGGTCATAATCCCCAATCTCCGCTTGAAAACAGGTACTGGCCTTaGGCATCTCTCCCGCAGGGG +
Preference number: 5 (lower is better)
Translates to: SCSLQGAFPGHNPQSPLENRYWP*ASLPQG
Trigger: CCCCTGCGGGAGAGATGCCAAAGGCCAGTACCTGTT...TTCAAGCGGAGATTGGGGATTATGACCCGGGAAAGCACCCTGAAGGCTACAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS-3UTR CAA 90 bp GACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTCTGTGCGGACTTGGCTaGACTTTTCCAGCTTGTAGA +
Preference number: 5 (lower is better)
Translates to: DLVCVPMVPRWVPLLGMGLCGLG*TFPACR
Trigger: TCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAG...ACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGCTGTGCGGACTTGGCTaGACTTTTCCAGCTTGTAGA +
Preference number: 5 (lower is better)
Translates to: EDLVCVPMVPRWVPLLGMLCGLG*TFPACR
Trigger: TCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAG...CATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp TTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCACGTGGCCCCGTaGATCTGCCGGGAGAGCAGC +
Preference number: 5 (lower is better)
Translates to: FPVYRALAYIPFFCWERTLHVAP*ICRESS
Trigger: GCTGCTCTCCCGGCAGATCAACGGGGCCACGTGCAG...GGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp AGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGAACAGGTACTGGCCTTaGGCATCTCTCTCAGCGTTT +
Preference number: 5 (lower is better)
Translates to: RTWCVCRWFRDGSHCWEWNRYWP*ASLSAF
Trigger: AAACGCTGAGAGAGATGCCAAAGGCCAGTACCTGTT...CCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp CACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCTGGCACCTGTGCGGACTTGGCTaGACTTTTCCAGCTTGTAGA +
Preference number: 5 (lower is better)
Translates to: HRSLVTVLWDISDRTLWHLCGLG*TFPACR
Trigger: TCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAG...GTGCCAGAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp ACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTACTGTGCGGACTTGGCTaGACTTTTCCAGCTTGTAGA +
Preference number: 5 (lower is better)
Translates to: TWCVCRWFRDGSHCWEWVLCGLG*TFPACR
Trigger: TCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAG...TACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACT +
Preference number: 5 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLGSRLI*ALDSIT
Trigger: AGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCC...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTGACCCTCTTGTTTCCTaGAAGAACAACAAACCCGAA +
Preference number: 5 (lower is better)
Translates to: DLVCVPMVPRWVPLLGMGDPLVS*KNNKPE
Trigger: TTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTC...ACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCAACAGGTACTGGCCTTaGGCATCTCTCTCAGCGTTT +
Preference number: 5 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLNRYWP*ASLSAF
Trigger: AAACGCTGAGAGAGATGCCAAAGGCCAGTACCTGTT...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110593.9
CDS CCA 90 bp GTAGGTTCAGGTGGTGGCAAAGGAGGTCAAACAGGTACTGGCCTTTaGCATCTCTCTCAGCGTTTTGTCTATGGCTTTCCTTCAGGCCTC +
Preference number: 5 (lower is better)
Translates to: VGSGGGKGGQTGTGL*HLSQRFVYGFPSGL
Trigger: GAGGCCTGAAGGAAAGCCATAGACAAAACGCTGAGAGAGATGCCAAAGGCCAGTACCTGTTTGACCTCCTTTGCCACCACCTGAACCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp AGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATATGTTTCGGGAAAAATaGGAACTTGGAGCTGTAGCC +
Preference number: 5 (lower is better)
Translates to: RGLGVCADGSAMGPIAGNMFREK*ELGAVA
Trigger: GGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACAT...ATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp CGCACTGGGGTGGAATGGGCACTGTCTCGTAGCGACTCAAGGCCTTCCATGATAATGTTTCGGGAAAAATaGGAACTTGGAGCTGTAGCC +
Preference number: 5 (lower is better)
Translates to: RTGVEWALSRSDSRPSMIMFREK*ELGAVA
Trigger: GGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACAT...TATCATGGAAGGCCTTGAGTCGCTACGAGACAGTGCCCATTCCACCCCAGTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128428.8
CDS-3UTR CAA 90 bp CCCATTGGGAAATGGTTCTGGGTAGCTTACACAAAACAGCAATGGAAGCTGGCCCATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGG +
Preference number: 5 (lower is better)
Translates to: PIGKWFWVAYTKQQWKLAHFQRC*QASGVG
Trigger: CCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATG...GGCCAGCTTCCATTGCTGTTTTGTGTAAGCTACCCAGAACCATTTCCCAATGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGTATTGATAGTGGAATaGTTCAAACTCGGGGGTCTG +
Preference number: 5 (lower is better)
Translates to: VMRGLGVCADGSAMGPIAVLIVE*FKLGGL
Trigger: CAGACCCCCGAGTTTGAACAATTCCACTATCAATAC...AGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR CAA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCACCACTGAGCGGATTTaGCAGGCAAACCATCGCCTG +
Preference number: 5 (lower is better)
Translates to: QSISLYPFLLLGKNPARLTTERI*QANHRL
Trigger: CAGGCGATGGTTTGCCTGCAAAATCCGCTCAGTGGT...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp ACTCAGCACAGGTCTCTGGTAACTGTGCTGTGGGACATCTCTGACCGCACACTCATGTTTCGGGAAAAATaGGAACTTGGAGCTGTAGCC +
Preference number: 5 (lower is better)
Translates to: TQHRSLVTVLWDISDRTLMFREK*ELGAVA
Trigger: GGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACAT...GAGTGTGCGGTCAGAGATGTCCCACAGCACAGTTACCAGAGACCTGTGCTGAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGCCTTCAAATTTCAGCTaGGTCACCTCATTCCATTTA +
Preference number: 5 (lower is better)
Translates to: EDLVCVPMVPRWVPLLGMPSNFS*VTSFHL
Trigger: TAAATGGAATGAGGTGACCAAGCTGAAATTTGAAGG...CATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGGTCCTTCAAATTTCAGCTaGGTCACCTCATTCCATTTA +
Preference number: 5 (lower is better)
Translates to: DLVCVPMVPRWVPLLGMGPSNFS*VTSFHL
Trigger: TAAATGGAATGAGGTGACCAAGCTGAAATTTGAAGG...ACCCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp AGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGTCCCATTGCTGGGAATGGCCTTCAAATTTCAGCTaGGTCACCTCATTCCATTTA +
Preference number: 5 (lower is better)
Translates to: RTWCVCRWFRDGSHCWEWPSNFS*VTSFHL
Trigger: TAAATGGAATGAGGTGACCAAGCTGAAATTTGAAGG...CCATTCCCAGCAATGGGACCCATCGCGGAACCATCGGCACACACACCAAGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GTTGCTGAGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAATGTTCCCGGTTTACATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGG +
Preference number: 5 (lower is better)
Translates to: VAEPFSEEPLKKLNVPGLHFQRC*QASGVG
Trigger: CCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATG...TAAACCGGGAACATTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp TATGCATGCATTATCAGAGGCGTGCTAGGGTGGCAGAGCATGGTCCACAAAATCGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACT +
Preference number: 5 (lower is better)
Translates to: YACIIRGVLGWQSMVHKIGSRLI*ALDSIT
Trigger: AGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCC...GATTTTGTGGACCATGCTCTGCCACCCTAGCACGCCTCTGATAATGCATGCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GTTGCTGAGCCTTTCTCGGAAGAGCCTCTGAAGAAACTGAATGTTCCCGGTTTAGTCCATGGAATGTGCTaGCTCTGCCTCTTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: VAEPFSEEPLKKLNVPGLVHGMC*LCLFWA
Trigger: AGCCCAGAAGAGGCAGAGCAAGCACATTCCATGGAC...TAAACCGGGAACATTCAGTTTCTTCAGAGGCTCTTCCGAGAAAGGCTCAGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GCCTCTCTCGAGGCTATGAAAGGTCAGAGGCGAGACTACCACTCACTGCATAGAATGTTTCGGGAAAAATaGGAACTTGGAGCTGTAGCC +
Preference number: 5 (lower is better)
Translates to: ASLEAMKGQRRDYHSLHRMFREK*ELGAVA
Trigger: GGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACAT...TCTATGCAGTGAGTGGTAGTCTCGCCTCTGACCTTTCATAGCCTCGAGAGAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp CCGGAACCCACTGGCACCAGTGAGAAAATTGCAGGGTACAGAGGACAACAGTCTGACCCTCTTGTTTCCTaGAAGAACAACAAACCCGAA +
Preference number: 5 (lower is better)
Translates to: PEPTGTSEKIAGYRGQQSDPLVS*KNNKPE
Trigger: TTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTC...AGACTGTTGTCCTCTGTACCCTGCAATTTTCTCACTGGTGCCAGTGGGTTCCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
CDS-3UTR CAA 90 bp AATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGCATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGG +
Preference number: 5 (lower is better)
Translates to: NVPGLQSISLYPFLLLGKHFQRC*QASGVG
Trigger: CCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATG...CTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GACCCTAAGGGTGGCATTCCTATAGTAAGTGCTGGTCTCTGCCATGGTCAAATTCTGTGCGGACTTGGCTaGACTTTTCCAGCTTGTAGA +
Preference number: 5 (lower is better)
Translates to: DPKGGIPIVSAGLCHGQILCGLG*TFPACR
Trigger: TCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAG...AATTTGACCATGGCAGAGACCAGCACTTACTATAGGAATGCCACCCTTAGGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp CTTCAGCTAGTGTCCCATCTACTGGGTGACACTACTGCAATCATCAGTCTAGTAACTCCATTACTTCCTTaGCGACCCGGCCACTGTATC +
Preference number: 5 (lower is better)
Translates to: LQLVSHLLGDTTAIISLVTPLLP*RPGHCI
Trigger: GATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGT...TACTAGACTGATGATTGCAGTAGTGTCACCCAGTAGATGGGACACTAGCTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000121219.8
CDS-3UTR CAA 90 bp CAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGCTCGACCCTCTTGTTTCCTaGAAGAACAACAAACCCGAA +
Preference number: 5 (lower is better)
Translates to: QSISLYPFLLLGKNPARLDPLVS*KNNKPE
Trigger: TTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTC...GAGCCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GTTGTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGCATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGG +
Preference number: 5 (lower is better)
Translates to: VVAFNGCHILNVDMVLPQHFQRC*QASGVG
Trigger: CCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATG...CTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAACAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp TGGACTTTGAGTCATGAGAGGACTTGGTGTGTGTGCCGATGGTTCCGCGATGGGGAGGGGACAAAAGTATaGATAGTGGAATTGTTCAAA +
Preference number: 5 (lower is better)
Translates to: WTLSHERTWCVCRWFRDGEGTKV*IVELFK
Trigger: TTTGAACAATTCCACTATCAATACTTTTGTCCCCTC...CCCATCGCGGAACCATCGGCACACACACCAAGTCCTCTCATGACTCAAAGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR CAA 90 bp AAGAAACTGAATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCATTTCCAGAGGTGCTaGCAGGCTTCTGGAGTTGGG +
Preference number: 5 (lower is better)
Translates to: KKLNVPGLQSISLYPFLLHFQRC*QASGVG
Trigger: CCCAACTCCAGAAGCCTGCAAGCACCTCTGGAAATG...CAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATTCAGTTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp AATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAAATAAGACTCCATTACTTCCTTaGCGACCCGGCCACTGTATC +
Preference number: 5 (lower is better)
Translates to: NGCHILNVDMVLPQATNKTPLLP*RPGHCI
Trigger: GATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGT...CTTATTTGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS TCA 90 bp TTGGTCACCTCATTCCATTTAATGAAGTGGACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAAGGAGTGAAGGCCAGAAACGCAGCA +
Preference number: 5 (lower is better)
Translates to: LVTSFHLMKWTLLFP*RTTNPKGVKARNAA
Trigger: TGCTGCGTTTCTGGCCTTCACTCCTTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTCCACTTCATTAAATGGAATGAGGTGACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000110592.2
ENSMUST00000110593.9
ENSMUST00000121219.8
ENSMUST00000133898.8
ENSMUST00000138157.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GTTGTTGCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGCTGTGCGGACTTGGCTaGACTTTTCCAGCTTGTAGA +
Preference number: 5 (lower is better)
Translates to: VVAFNGCHILNVDMVLPQLCGLG*TFPACR
Trigger: TCTACAAGCTGGAAAAGTCAAGCCAAGTCCGCACAG...CTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGCAACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp TTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGAACCCTGCTAGGGTATTGATAGTGGAATaGTTCAAACTCGGGGGTCTG +
Preference number: 5 (lower is better)
Translates to: LQSISLYPFLLLGKNPARVLIVE*FKLGGL
Trigger: CAGACCCCCGAGTTTGAACAATTCCACTATCAATAC...CCTAGCAGGGTTCTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR CAA 90 bp GTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAGTCCATGGAATGTGCTaGCTCTGCCTCTTCTGGGCT +
Preference number: 5 (lower is better)
Translates to: VLSCGICFRSHTNCCWYGVHGMC*LCLFWA
Trigger: AGCCCAGAAGAGGCAGAGCAAGCACATTCCATGGAC...TCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110593.9
CDS-3UTR CAA 90 bp AATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGATGTTTCGGGAAAAATaGGAACTTGGAGCTGTAGCC +
Preference number: 5 (lower is better)
Translates to: NVPGLQSISLYPFLLLGKMFREK*ELGAVA
Trigger: GGCTACAGCTCCAAGTTCCAATTTTTCCCGAAACAT...CTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp TGGCAGTACTTCTTGATCTTGGTATCAGATGACACACATCACTGCTGGTTGGTTGACCCTCTTGTTTCCTaGAAGAACAACAAACCCGAA +
Preference number: 5 (lower is better)
Translates to: WQYFLILVSDDTHHCWLVDPLVS*KNNKPE
Trigger: TTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTC...AACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAAGAAGTACTGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp AATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGGACCCTCTTGTTTCCTaGAAGAACAACAAACCCGAA +
Preference number: 5 (lower is better)
Translates to: NVPGLQSISLYPFLLLGKDPLVS*KNNKPE
Trigger: TTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTC...CTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GCTTTTAATGGCTGTCATATTCTGAATGTGGACATGGTTCTACCCCAGGCAACAATCTCTCTCAGCGTTTaGTCTATGGCTTTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: AFNGCHILNVDMVLPQATISLSV*SMAFLQ
Trigger: CTGAAGGAAAGCCATAGACAAAACGCTGAGAGAGAT...TGTTGCCTGGGGTAGAACCATGTCCACATTCAGAATATGACAGCCATTAAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110593.9
CDS-3UTR CAA 90 bp AATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGCTGGGAAAGATCTCTCTCAGCGTTTaGTCTATGGCTTTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: NVPGLQSISLYPFLLLGKISLSV*SMAFLQ
Trigger: CTGAAGGAAAGCCATAGACAAAACGCTGAGAGAGAT...CTTTCCCAGCAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155570.8
CDS-3UTR CAA 90 bp GTTAGAAAAATACTTTACCCTCTGAGCTACACATCCTCAGCCCTATGTTTTTATACTCCATTACTTCCTTaGCGACCCGGCCACTGTATC +
Preference number: 5 (lower is better)
Translates to: VRKILYPLSYTSSALCFYTPLLP*RPGHCI
Trigger: GATACAGTGGCCGGGTCGCAAAGGAAGTAATGGAGT...ATAAAAACATAGGGCTGAGGATGTGTAGCTCAGAGGGTAAAGTATTTTTCTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp ATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACT +
Preference number: 5 (lower is better)
Translates to: ICFRSHTNCCWYGNDQIGGSRLI*ALDSIT
Trigger: AGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCC...GCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GTTAGAAAAATACTTTACCCTCTGAGCTACACATCCTCAGCCCTATGTTTTTATGGCTCCCGTTTGATCTaGGCACTGGACTCCATTACT +
Preference number: 5 (lower is better)
Translates to: VRKILYPLSYTSSALCFYGSRLI*ALDSIT
Trigger: AGTAATGGAGTCCAGTGCCAAGATCAAACGGGAGCC...ATAAAAACATAGGGCTGAGGATGTGTAGCTCAGAGGGTAAAGTATTTTTCTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp TGGCAGTACTTCTTGATCTTGGTATCAGATGACACACATCACTGCTGGTTGGTTCCTTCAAATTTCAGCTaGGTCACCTCATTCCATTTA +
Preference number: 5 (lower is better)
Translates to: WQYFLILVSDDTHHCWLVPSNFS*VTSFHL
Trigger: TAAATGGAATGAGGTGACCAAGCTGAAATTTGAAGG...AACCAACCAGCAGTGATGTGTGTCATCTGATACCAAGATCAAGAAGTACTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp AAAAGAGTACATTGCTTTGAAGGAAAACGTAACTTAGATTTGGCACACGAAAGGGACCCTCTTGTTTCCTaGAAGAACAACAAACCCGAA +
Preference number: 5 (lower is better)
Translates to: KRVHCFEGKRNLDLAHERDPLVS*KNNKPE
Trigger: TTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTC...CCTTTCGTGTGCCAAATCTAAGTTACGTTTTCCTTCAAAGCAATGTACTCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GTTAGAAAAATACTTTACCCTCTGAGCTACACATCCTCAGCCCTATGTTTTTATGACCCTCTTGTTTCCTaGAAGAACAACAAACCCGAA +
Preference number: 5 (lower is better)
Translates to: VRKILYPLSYTSSALCFYDPLVS*KNNKPE
Trigger: TTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTC...ATAAAAACATAGGGCTGAGGATGTGTAGCTCAGAGGGTAAAGTATTTTTCTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp GTCTTGTCATGTGGTATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGACCTTCAAATTTCAGCTaGGTCACCTCATTCCATTTA +
Preference number: 5 (lower is better)
Translates to: VLSCGICFRSHTNCCWYGPSNFS*VTSFHL
Trigger: TAAATGGAATGAGGTGACCAAGCTGAAATTTGAAGG...TCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATATACCACATGACAAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS-3UTR CAA 90 bp AAGAAACTGAATGTTCCCGGTTTACAGAGCATTAGCCTATATCCCTTTCTTCTGGAGGGGACAAAAGTATaGATAGTGGAATTGTTCAAA +
Preference number: 5 (lower is better)
Translates to: KKLNVPGLQSISLYPFLLEGTKV*IVELFK
Trigger: TTTGAACAATTCCACTATCAATACTTTTGTCCCCTC...CAGAAGAAAGGGATATAGGCTAATGCTCTGTAAACCGGGAACATTCAGTTTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
CDS-3UTR CAA 90 bp ATATGTTTTAGATCTCACACAAATTGTTGCTGGTACGGAAATGATCAGATAGGCCCTTCAAATTTCAGCTaGGTCACCTCATTCCATTTA +
Preference number: 5 (lower is better)
Translates to: ICFRSHTNCCWYGNDQIGPSNFS*VTSFHL
Trigger: TAAATGGAATGAGGTGACCAAGCTGAAATTTGAAGG...GCCTATCTGATCATTTCCGTACCAGCAACAATTTGTGTGAGATCTAAAACATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000133898.8
ENSMUST00000138157.8
CDS GCA 72 bp GCGTGGTACCAGTGCCCGGCTGAGCTCGGGCTGGGATaGCGCGCGCCGGGCGGTGCGGCTGCGGGGCGGACA +
Preference number: 6 (lower is better)
Translates to: AWYQCPAELGLG*RAPGGAAAGRT
Trigger: TGTCCGCCCCGCAGCCGCACCGCCCGGCGCGCGGCATCCCAGCCCGAGCTCAGCCGGGCACTGGTACCACGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS TCA 72 bp GCGAGCCGGCGGGCGGGCGGGCGGGCGGCGCGGCGCTaGCCTGGATGGTGCAGGTGTACTCGCTGTCGTCCA +
Preference number: 6 (lower is better)
Translates to: ASRRAGGRAARR*PGWCRCTRCRP
Trigger: TGGACGACAGCGAGTACACCTGCACCATCCAGGTCAGCGCCGCGCCGCCCGCCCGCCCGCCCGCCGGCTCGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS CCA 72 bp CCGGCGGGCGGGCGGGCGGGCGGCGCGGCGCTGACCTaGATGGTGCAGGTGTACTCGCTGTCGTCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: PAGGRAGGAALT*MVQVYSLSSSS
Trigger: GCTGCTGGACGACAGCGAGTACACCTGCACCATCCAGGTCAGCGCCGCGCCGCCCGCCCGCCCGCCCGCCGG
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS CCA 72 bp GCCTTTGGCATCTCTCCCGCAGGGGCGCGCGGCGCGTaGTACCAGTGCCCGGCTGAGCTCGGGCTGGGATGC +
Preference number: 6 (lower is better)
Translates to: AFGISPAGARGA*YQCPAELGLGC
Trigger: GCATCCCAGCCCGAGCTCAGCCGGGCACTGGTACCACGCGCCGCGCGCCCCTGCGGGAGAGATGCCAAAGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS TCA 72 bp TGCACTCTCTGTTCTTGCTCTGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCTCCTCCCAGGGCCTCC +
Preference number: 6 (lower is better)
Translates to: CTLCSCSDPPCP*HRALSSPPRAS
Trigger: GGAGGCCCTGGGAGGAGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGAGAGTGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110593.9
ENSMUST00000131092.8
ENSMUST00000138157.8
CDS TCA 72 bp TCTTGCATCTGTTCTTGCTCTGACCCGCCGTGCCCCTaGCACAGGGCCCTCAGCTCTCCTCCCAGGGCCTCC +
Preference number: 6 (lower is better)
Translates to: SCICSCSDPPCP*HRALSSPPRAS
Trigger: GGAGGCCCTGGGAGGAGAGCTGAGGGCCCTGTGTCAGGGGCACGGCGGGTCAGAGCAAGAACAGATGCAAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133898.8
CDS CCA 72 bp GGTGGTGGCAAAGGAGGTCAAACAGGTACTGGCCTTTaGCATCTCTCCCGCAGGGGCGCGCGGCGCGTGGTA +
Preference number: 6 (lower is better)
Translates to: GGGKGGQTGTGL*HLSRRGARRVV
Trigger: TACCACGCGCCGCGCGCCCCTGCGGGAGAGATGCCAAAGGCCAGTACCTGTTTGACCTCCTTTGCCACCACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS CAA 72 bp AGGTGGTGGCAAAGGAGGTCAAACAGGTACTGGCCTTaGGCATCTCTCCCGCAGGGGCGCGCGGCGCGTGGT +
Preference number: 6 (lower is better)
Translates to: RWWQRRSNRYWP*ASLPQGRAARG
Trigger: ACCACGCGCCGCGCGCCCCTGCGGGAGAGATGCCAAAGGCCAGTACCTGTTTGACCTCCTTTGCCACCACCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145075.8
CDS CCA 72 bp ATCCTCAGGATGCGGACGCTTAGGGTCCGAAGGCAGTaGTTAGTCAGCCGGAGCTGGACACGGACTCTGGTC +
Preference number: 6 (lower is better)
Translates to: ILRMRTLRVRRQ*LVSRSWTRTLV
Trigger: GACCAGAGTCCGTGTCCAGCTCCGGCTGACTAACCACTGCCTTCGGACCCTAAGCGTCCGCATCCTGAGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212518.2
CDS CCA 72 bp GTGTCCCCATGGGAAGAGGACCGCACTGGGGTGGAATaGGCACTGTCTCGTAGCGACTCAAGGCCTTTGAGG +
Preference number: 6 (lower is better)
Translates to: VSPWEEDRTGVE*ALSRSDSRPLR
Trigger: CCTCAAAGGCCTTGAGTCGCTACGAGACAGTGCCCATTCCACCCCAGTGCGGTCCTCTTCCCATGGGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212518.2
CDS TCA 72 bp TGGAATGGGCACTGTCTCGTAGCGACTCAAGGCCTTTaGGGTGATCTAGCTGATGCCTCTGTCCAGAAGTGG +
Preference number: 6 (lower is better)
Translates to: WNGHCLVATQGL*GDLADASVQKW
Trigger: CCACTTCTGGACAGAGGCATCAGCTAGATCACCTCAAAGGCCTTGAGTCGCTACGAGACAGTGCCCATTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212518.2
CDS GCA 72 bp TTCCTGGTCCCTTCCAAGGCCGCTGCTCCTTCTCGATaGCTTCCTCAGATCTGTCTCTCTCTTGCATCTGTT +
Preference number: 6 (lower is better)
Translates to: FLVPSKAAAPSR*LPQICLSLASV
Trigger: AACAGATGCAAGAGAGAGACAGATCTGAGGAAGGCATCGAGAAGGAGCAGCGGCCTTGGAAGGGACCAGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133898.8
CDS CAA 72 bp CAGGTGTCAATGAGCAGGCTCACCACTGAGCGGATTTaGCAGGCAAACCATCGCCTGAGGGGACAAAAGTAT +
Preference number: 6 (lower is better)
Translates to: QVSMSRLTTERI*QANHRLRGQKY
Trigger: ATACTTTTGTCCCCTCAGGCGATGGTTTGCCTGCAAAATCCGCTCAGTGGTGAGCCTGCTCATTGACACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110592.2
ENSMUST00000121219.8
ENSMUST00000212518.2
CDS CAA 90 bp AGTAGGTTCAGGTGGTGGCAAAGGAGGTCAAACAGGTACTGGCCTTaGGCATCTCTCTCAGCGTTTTGTCTATGGCTTTCCTTCAGGCCT +
Preference number: 6 (lower is better)
Translates to: SRFRWWQRRSNRYWP*ASLSAFCLWLSFRP
Trigger: AGGCCTGAAGGAAAGCCATAGACAAAACGCTGAGAGAGATGCCAAAGGCCAGTACCTGTTTGACCTCCTTTGCCACCACCTGAACCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000155570.8
CDS CCA 72 bp TACTGGCCTTTGGCATCTCTCTCAGCGTTTTGTCTATaGCTTTCCTTCAGGCCTCCGAAGCGTCCATGGAAT +
Preference number: 6 (lower is better)
Translates to: YWPLASLSAFCL*LSFRPPKRPWN
Trigger: ATTCCATGGACGCTTCGGAGGCCTGAAGGAAAGCCATAGACAAAACGCTGAGAGAGATGCCAAAGGCCAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000155570.8
CDS CAA 72 bp AGGTGGTGGCAAAGGAGGTCAAACAGGTACTGGCCTTaGGCATCTCTCTCAGCGTTTTGTCTATGGCTTTCC +
Preference number: 6 (lower is better)
Translates to: RWWQRRSNRYWP*ASLSAFCLWLS
Trigger: GGAAAGCCATAGACAAAACGCTGAGAGAGATGCCAAAGGCCAGTACCTGTTTGACCTCCTTTGCCACCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110593.9
ENSMUST00000155570.8
CDS TCA 72 bp TCATTCCATTTAATGAAGTGGACCCTCTTGTTTCCTTaGAGAACAACAAACCCGAAAGGAGTGAAGGCCAGA +
Preference number: 6 (lower is better)
Translates to: SFHLMKWTLLFP*RTTNPKGVKAR
Trigger: TCTGGCCTTCACTCCTTTCGGGTTTGTTGTTCTTCAAGGAAACAAGAGGGTCCACTTCATTAAATGGAATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000110592.2
ENSMUST00000110593.9
ENSMUST00000121219.8
ENSMUST00000128428.8
ENSMUST00000133898.8
ENSMUST00000138157.8
ENSMUST00000155570.8