Pregenerated sensors for FRA10AC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054237Ensembl transcript IDs: ENSMUST00000067167.6
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGAAATGTCTGAAATGTCCCGTGCTGCTGAAGGATCTATCCCAGTaGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCTC | + |
|
Preference number: 1 (lower is better) Translates to: RKCLKCPVLLKDLSQ*LSRLNSMDTLTECL Trigger: GAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCTTCAGCAGCACGGGACATTTCAGACATTTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| 3UTR CCA 72 bp | CTGAAATGTCCCGTGCTGCTGAAGGATCTATCCCAGTaGCTGTCCAGACTCAACAGCATGGACACACTCACC | + |
|
Preference number: 3 (lower is better) Translates to: LKCPVLLKDLSQ*LSRLNSMDTLT Trigger: GGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCTTCAGCAGCACGGGACATTTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| 3UTR CCA 72 bp | AGGATCTATCCCAGTGGCTGTCCAGACTCAACAGCATaGACACACTCACCGAGTGTCTCTGTACATCTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: RIYPSGCPDSTA*THSPSVSVHLL Trigger: GAGGAGATGTACAGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CCA 90 bp | CTGCTGAAGGATCTATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCCTTCTCATCTGTCTCTaGCAGCGGACCCTTCCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LLKDLSQWLSRLNSMDTLLLICL*QRTLPE Trigger: CTCTGGAAGGGTCCGCTGCCAGAGACAGATGAGAAG...GAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCTTCAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR TCA 90 bp | GTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCTCTGTACATCTCCTCACCAGAGCTCAGAGTCTaGAGCACTGTCTTCCTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: VQTQQHGHTHRVSLYISSPELRV*STVFLL Trigger: GAGGAGGAAGACAGTGCTTCAGACTCTGAGCTCTGG...TGAGGAGATGTACAGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CCA 90 bp | AAGGATCTATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGGCGGCGACTTGTTTATaGGCCACCTTTCCATGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: KDLSQWLSRLNSMDTLTEAATCL*ATFPCL Trigger: AAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGC...CTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CCA 90 bp | TATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCTCTTCTTCCTCTTTTTGCTaGAGCCTCCGCCTTGCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: YPSGCPDSTAWTHSPSVSSSSFC*SLRLAH Trigger: ATGAGCAAGGCGGAGGCTCCAGCAAAAAGAGGAAGA...AGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CCA 90 bp | CTGAAGGATCTATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCACCCTTCATCCTTCCCCTTaGAAGCTTCCTCTGAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: LKDLSQWLSRLNSMDTLTLHPSP*KLPLKV Trigger: CACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAG...GGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCTTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR TCA 90 bp | AGTGGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCTCTGTACATCTTGGAAGCTTCCTCTaGAGGTGGCGATCTGGATTT | + |
|
Preference number: 4 (lower is better) Translates to: SGCPDSTAWTHSPSVSVHLGSFL*RWRSGF Trigger: AAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAG...ATGTACAGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR GCA 90 bp | TGGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCTCTGTACATCTTCTTCTTCCTCTTTTTaGTGGAGCCTCCGCCTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: WLSRLNSMDTLTECLCTSSSSSF*WSLRLA Trigger: AGCAAGGCGGAGGCTCCAGCAAAAAGAGGAAGAAGA...AGATGTACAGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR GCA 90 bp | TATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCTCTCTCCCAAGTCATATCTaGTTCATCCTCCTCATTCCA | + |
|
Preference number: 4 (lower is better) Translates to: YPSGCPDSTAWTHSPSVSLPSHI*FILLIP Trigger: TGGAATGAGGAGGATGAAGCAGATATGACTTGGGAG...AGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR TCA 90 bp | AAAGTAAAGGAGGAAATGTCTGAAATGTCCCGTGCTGCTGAAGGATCTATCCCACAGTGTAACCGAAGTTaGCTTCCCAGCTCCTCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: KVKEEMSEMSRAAEGSIPQCNRS*LPSSSG Trigger: GCCTGAGGAGCTGGGAAGTCAACTTCGGTTACACTG...TGGGATAGATCCTTCAGCAGCACGGGACATTTCAGACATTTCCTCCTTTACTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR TCA 90 bp | ACTCAACAGCATGGACACACTCACCGAGTGTCTCTGTACATCTCCTCACCAAGGTCCATAGCTATGAGATaGAACCTTCTATTTCTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TQQHGHTHRVSLYISSPRSIAMR*NLLFLA Trigger: AGCAAGAAATAGAAGGTTTCATCTCATAGCTATGGA...CCTTGGTGAGGAGATGTACAGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CAA 90 bp | ATCTATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCGCTGGAGCCTCCGCCTaGCTCATCGTCACTAAAATC | + |
|
Preference number: 5 (lower is better) Translates to: IYPSGCPDSTAWTHSPSVAGASA*LIVTKI Trigger: GATTTTAGTGACGATGAGCAAGGCGGAGGCTCCAGC...GACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CAA 90 bp | CTGCTGAAGGATCTATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCGTCTTCTTCCTCTTTTaGCTGGAGCCTCCGCCTTGC | + |
|
Preference number: 5 (lower is better) Translates to: LLKDLSQWLSRLNSMDTLVFFLF*LEPPPC Trigger: GCAAGGCGGAGGCTCCAGCAAAAAGAGGAAGAAGAC...GAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCTTCAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CAA 90 bp | GCTGCTGAAGGATCTATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCCTTCATCCTTCCCCTaGGAAGCTTCCTCTGAAGGT | + |
|
Preference number: 5 (lower is better) Translates to: AAEGSIPVAVQTQQHGHTPSSFP*EASSEG Trigger: ACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAGG...AGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATAGATCCTTCAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CAA 90 bp | AACCAGGTTTTAGATAAGCAGCCGAGCAGCCACGAAAGTAAAGGAGGAAATGTCCAAGTCTGCGGCGACTaGTTTATGGGCCACCTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: NQVLDKQPSSHESKGGNVQVCGD*FMGHLS Trigger: GGAAAGGTGGCCCATAAACAAGTCGCCGCAGACTTG...GACATTTCCTCCTTTACTTTCGTGGCTGCTCGGCTGCTTATCTAAAACCTGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CAA 90 bp | TATCCCAGTGGCTGTCCAGACTCAACAGCATGGACACACTCACCGAGTGTCTCTTCCATGCCTTTCTTTTaGAAACGGTTTTGTAAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: YPSGCPDSTAWTHSPSVSSMPFF*KRFCKQ Trigger: CTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGA...AGAGACACTCGGTGAGTGTGTCCATGCTGTTGAGTCTGGACAGCCACTGGGATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CCA 90 bp | AATCTTCTGACTTCTTTGAGGATGAATGTCCTTCATCCTTCCCCTTaGAAGCTTCCTCTGAAGGTGGCGATCTGGATTTCTTACGAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: NLLTSLRMNVLHPSP*KLPLKVAIWISYEV Trigger: CACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAGGACATTCATCCTCAAAGAAGTCAGAAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS TCA 90 bp | TCTGCGGCGACTTGTTTATGGGCCACCTTTCCATGCCTTTCTTTTTaGAACGGTTTTGTAAGCAGCAACTCATCTTCGACTGTCTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SAATCLWATFPCLSF*NGFVSSNSSSTVFF Trigger: GAAGAAGACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS-3UTR CAA 90 bp | AAAGTAAAGGAGGAAATGTCTGAAATGTCCCGTGCTGCTGAAGGATCTATCCCAAATCTTCTGACTTCTTaGAGGATGAATGTCCTTCAT | + |
|
Preference number: 5 (lower is better) Translates to: KVKEEMSEMSRAAEGSIPNLLTS*RMNVLH Trigger: ATGAAGGACATTCATCCTCAAAGAAGTCAGAAGATT...TGGGATAGATCCTTCAGCAGCACGGGACATTTCAGACATTTCCTCCTTTACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CCA 72 bp | CCTTCCCCTTGGAAGCTTCCTCTGAAGGTGGCGATCTaGATTTCTTACGAGGTGACTCGTCACACTCAGGCG | + |
|
Preference number: 6 (lower is better) Translates to: PSPWKLPLKVAI*ISYEVTRHTQA Trigger: CGCCTGAGTGTGACGAGTCACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CAA 90 bp | CTCATCTTCGACTGTCTTCTTCCTCTTTTTGCTGGAGCCTCCGCCTaGCTCATCGTCACTAAAATCAGAGTCATAGCCTCCATGCCCATG | + |
|
Preference number: 6 (lower is better) Translates to: LIFDCLLPLFAGASA*LIVTKIRVIASMPM Trigger: CATGGGCATGGAGGCTATGACTCTGATTTTAGTGACGATGAGCAAGGCGGAGGCTCCAGCAAAAAGAGGAAGAAGACAGTCGAAGATGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CAA 72 bp | GACTGTCTTCTTCCTCTTTTTGCTGGAGCCTCCGCCTaGCTCATCGTCACTAAAATCAGAGTCATAGCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: DCLLPLFAGASA*LIVTKIRVIAS Trigger: GGAGGCTATGACTCTGATTTTAGTGACGATGAGCAAGGCGGAGGCTCCAGCAAAAAGAGGAAGAAGACAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CAA 72 bp | AGCAGCAACTCATCTTCGACTGTCTTCTTCCTCTTTTaGCTGGAGCCTCCGCCTTGCTCATCGTCACTAAAA | + |
|
Preference number: 6 (lower is better) Translates to: SSNSSSTVFFLF*LEPPPCSSSLK Trigger: TTTTAGTGACGATGAGCAAGGCGGAGGCTCCAGCAAAAAGAGGAAGAAGACAGTCGAAGATGAGTTGCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CAA 72 bp | GACTTCTTTGAGGATGAATGTCCTTCATCCTTCCCCTaGGAAGCTTCCTCTGAAGGTGGCGATCTGGATTTC | + |
|
Preference number: 6 (lower is better) Translates to: DFFEDECPSSFP*EASSEGGDLDF Trigger: GAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAGGACATTCATCCTCAAAGAAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CAA 90 bp | GAATCTTCTGACTTCTTTGAGGATGAATGTCCTTCATCCTTCCCCTaGGAAGCTTCCTCTGAAGGTGGCGATCTGGATTTCTTACGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: ESSDFFEDECPSSFP*EASSEGGDLDFLRG Trigger: ACCTCGTAAGAAATCCAGATCGCCACCTTCAGAGGAAGCTTCCAAGGGGAAGGATGAAGGACATTCATCCTCAAAGAAGTCAGAAGATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS TCA 72 bp | CGTTTCTCTTTTCACCGTGCTCAGTGTAACCGAAGTTaGCTTCCCAGCTCCTCAGGCCTTCTTTTTCATTAC | + |
|
Preference number: 6 (lower is better) Translates to: RFSFHRAQCNRS*LPSSSGLLFHY Trigger: GTAATGAAAAAGAAGGCCTGAGGAGCTGGGAAGTCAACTTCGGTTACACTGAGCACGGTGAAAAGAGAAACG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CAA 90 bp | GTCTGCGGCGACTTGTTTATGGGCCACCTTTCCATGCCTTTCTTTTaGAAACGGTTTTGTAAGCAGCAACTCATCTTCGACTGTCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: VCGDLFMGHLSMPFF*KRFCKQQLIFDCLL Trigger: AAGAAGACAGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTCGCCGCAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS CAA 72 bp | GACTTGTTTATGGGCCACCTTTCCATGCCTTTCTTTTaGAAACGGTTTTGTAAGCAGCAACTCATCTTCGAC | + |
|
Preference number: 6 (lower is better) Translates to: DLFMGHLSMPFF*KRFCKQQLIFD Trigger: GTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||
| CDS TCA 72 bp | ACTTGTTTATGGGCCACCTTTCCATGCCTTTCTTTTTaGAACGGTTTTGTAAGCAGCAACTCATCTTCGACT | + |
|
Preference number: 6 (lower is better) Translates to: TCLWATFPCLSF*NGFVSSNSSST Trigger: AGTCGAAGATGAGTTGCTGCTTACAAAACCGTTTCAAAAAGAAAGGCATGGAAAGGTGGCCCATAAACAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000067167.6 |
||