Pregenerated sensors for FPR-RS4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048062

Ensembl transcript IDs: ENSMUST00000095651.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CACATCCCCTCTTGCATCTCTCACTGTAGTCAAGAAGAGAAAATGTaGCAAGGTAAGCAGCAGAGCAAATATCCAAGCTCCAAGAACCAC	+
Preference number: 5 (lower is better) Translates to: HIPSCISHCSQEEKM*QGKQQSKYPSSKNH Trigger: GTGGTTCTTGGAGCTTGGATATTTGCTCTGCTGCTTACCTTGCCACATTTTCTCTTCTTGACTACAGTGAGAGATGCAAGAGGGGATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095651.2
CDS CCA 72 bp	GCAGAGCAAATATCCAAGCTCCAAGAACCACTTTTCTaGCCAGACTCACAGTTCGGTGATTCTGAGACCATA	+
Preference number: 6 (lower is better) Translates to: AEQISKLQEPLF*PDSQFGDSETI Trigger: TATGGTCTCAGAATCACCGAACTGTGAGTCTGGCCAGAAAAGTGGTTCTTGGAGCTTGGATATTTGCTCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095651.2
CDS GCA 72 bp	CCTGAAGCTGTGGCAGCAATAACAGACACCTTTAACTaGTCTTCAGAGGTTGCAACCCAGGATTCAAATTTA	+
Preference number: 6 (lower is better) Translates to: PEAVAAITDTFN*SSEVATQDSNL Trigger: TAAATTTGAATCCTGGGTTGCAACCTCTGAAGAGCAGTTAAAGGTGTCTGTTATTGCTGCCACAGCTTCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095651.2
CDS TCA 72 bp	CTAGACTGGCATACAGAGAATAGATTAGTCTGTCTCTaGATTCCTGACCCAGGAATACATAGAGTATTGGGT	+
Preference number: 6 (lower is better) Translates to: LDWHTENRLVCL*IPDPGIHRVLG Trigger: ACCCAATACTCTATGTATTCCTGGGTCAGGAATTCAGAGACAGACTAATCTATTCTCTGTATGCCAGTCTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095651.2
CDS CAA 72 bp	ATGAAAGACATGGGCATGCTGAATCCAATAATGAAATaGATGATTCCTGAAGCTGTGGCAGCAATAACAGAC	+
Preference number: 6 (lower is better) Translates to: MKDMGMLNPIMK*MIPEAVAAITD Trigger: GTCTGTTATTGCTGCCACAGCTTCAGGAATCATCAATTTCATTATTGGATTCAGCATGCCCATGTCTTTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095651.2
CDS TCA 72 bp	AAAAGCCATTTTCCTCTCATGACCATTGAGATGATGTaGAGTGGTAGAGTAGCCATGAAAGATAAATCACTC	+
Preference number: 6 (lower is better) Translates to: KSHFPLMTIEMM*SGRVAMKDKSL Trigger: GAGTGATTTATCTTTCATGGCTACTCTACCACTTCACATCATCTCAATGGTCATGAGAGGAAAATGGCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095651.2
CDS GCA 72 bp	GGATTCAAATTTAGATATACAGTACACATCCCCTCTTaGATCTCTCACTGTAGTCAAGAAGAGAAAATGTGG	+
Preference number: 6 (lower is better) Translates to: GFKFRYTVHIPS*ISHCSQEEKMW Trigger: CCACATTTTCTCTTCTTGACTACAGTGAGAGATGCAAGAGGGGATGTGTACTGTATATCTAAATTTGAATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095651.2
CDS TCA 72 bp	AAGGAAGCCAAGGTATTTGCTGGGTTAACCAACATATaGATAATGCTCAGTGTCTCATTGTTAAAGATGTTG	+
Preference number: 6 (lower is better) Translates to: KEAKVFAGLTNI*IMLSVSLLKML Trigger: CAACATCTTTAACAATGAGACACTGAGCATTATTCATATGTTGGTTAACCCAGCAAATACCTTGGCTTCCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095651.2

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