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Pregenerated sensors for FPR-RS3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060701

Ensembl transcript IDs: ENSMUST00000071189.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CAGCTGTTGAAGGAAGCCAGTGTGCTTGCTGGGTTCAACAAAATGTaGATGCTGCTTGGTGTCTCCTTATTCCAGATATTACCTAGAAGA +
Preference number: 5 (lower is better)
Translates to: QLLKEASVLAGFNKM*MLLGVSLFQILPRR
Trigger: TCTTCTAGGTAATATCTGGAATAAGGAGACACCAAGCAGCATTCACATTTTGTTGAACCCAGCAAGCACACTGGCTTCCTTCAACAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS GCA 90 bp TGCTCCTCAGGGTTTGCAACCACAGATTCAAAGTTACATGTACAGTaGACTTCGCCTCTTGCATCTCTCACTGTAGTCAAGAAGAGAAAA +
Preference number: 5 (lower is better)
Translates to: CSSGFATTDSKLHVQ*TSPLASLTVVKKRK
Trigger: TTTTCTCTTCTTGACTACAGTGAGAGATGCAAGAGGCGAAGTGCACTGTACATGTAACTTTGAATCTGTGGTTGCAAACCCTGAGGAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS GCA 72 bp CAGAGTCGGCAGGACATGAAGAAAAGTTGCTGCTTTTaGCACTGCTTAGGACTGAGTCTTCTCGCAGCGCCC +
Preference number: 6 (lower is better)
Translates to: QSRQDMKKSCCF*HCLGLSLLAAP
Trigger: GGGCGCTGCGAGAAGACTCAGTCCTAAGCAGTGGCAAAAGCAGCAACTTTTCTTCATGTCCTGCCGACTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS TCA 72 bp AACTCTGGAGGTGGTAGAATCATAAAACACCACTTCTaGGCCATTCAGTGGGATGGAGGAGTTGGCTTCCAT +
Preference number: 6 (lower is better)
Translates to: NSGGGRIIKHHF*AIQWDGGVGFH
Trigger: ATGGAAGCCAACTCCTCCATCCCACTGAATGGCTCAGAAGTGGTGTTTTATGATTCTACCACCTCCAGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS GCA 72 bp ATAGTTCAGAGTCGGCAGGACATGAAGAAAAGTTGCTaGTTTTGCCACTGCTTAGGACTGAGTCTTCTCGCA +
Preference number: 6 (lower is better)
Translates to: IVQSRQDMKKSC*FCHCLGLSLLA
Trigger: TGCGAGAAGACTCAGTCCTAAGCAGTGGCAAAAGCAGCAACTTTTCTTCATGTCCTGCCGACTCTGAACTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS CCA 72 bp GCAGAGAAAGAATCCAAGCTCCAACAATCACTTTCCTaGCCAGACTCACAGTTCGGTGATTCTGAACCCATA +
Preference number: 6 (lower is better)
Translates to: AEKESKLQQSLS*PDSQFGDSEPI
Trigger: TATGGGTTCAGAATCACCGAACTGTGAGTCTGGCCAGGAAAGTGATTGTTGGAGCTTGGATTCTTTCTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS CCA 72 bp CAAGCCCATTACCTAGCACACCAAGGACAAAGGTTATaGAGAGAACTATCACTGAGAGGATCCATAGAACTC +
Preference number: 6 (lower is better)
Translates to: QAHYLAHQGQRL*RELSLRGSIEL
Trigger: GAGTTCTATGGATCCTCTCAGTGATAGTTCTCTCCATAACCTTTGTCCTTGGTGTGCTAGGTAATGGGCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS TCA 72 bp AAGGAAGCCAGTGTGCTTGCTGGGTTCAACAAAATGTaGATGCTGCTTGGTGTCTCCTTATTCCAGATATTA +
Preference number: 6 (lower is better)
Translates to: KEASVLAGFNKM*MLLGVSLFQIL
Trigger: TAATATCTGGAATAAGGAGACACCAAGCAGCATTCACATTTTGTTGAACCCAGCAAGCACACTGGCTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS GCA 72 bp CCAGTGTGCTTGCTGGGTTCAACAAAATGTGAATGCTaGTTGGTGTCTCCTTATTCCAGATATTACCTAGAA +
Preference number: 6 (lower is better)
Translates to: PVCLLGSTKCEC*LVSPYSRYYLE
Trigger: TTCTAGGTAATATCTGGAATAAGGAGACACCAAGCAGCATTCACATTTTGTTGAACCCAGCAAGCACACTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS GCA 72 bp AAGCCAGTGTGCTTGCTGGGTTCAACAAAATGTGAATaGTGCTTGGTGTCTCCTTATTCCAGATATTACCTA +
Preference number: 6 (lower is better)
Translates to: KPVCLLGSTKCE*CLVSPYSRYYL
Trigger: TAGGTAATATCTGGAATAAGGAGACACCAAGCAGCATTCACATTTTGTTGAACCCAGCAAGCACACTGGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2
CDS GCA 72 bp AGATTCAAAGTTACATGTACAGTGCACTTCGCCTCTTaGATCTCTCACTGTAGTCAAGAAGAGAAAATGTGG +
Preference number: 6 (lower is better)
Translates to: RFKVTCTVHFAS*ISHCSQEEKMW
Trigger: CCACATTTTCTCTTCTTGACTACAGTGAGAGATGCAAGAGGCGAAGTGCACTGTACATGTAACTTTGAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071189.2