Pregenerated sensors for FOXS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074676Ensembl transcript IDs: ENSMUST00000099200.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CACCACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCTTGGCCTGCCAGGGCTaGGTTCTTGCAGAGTGCCCT | + |
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Preference number: 2 (lower is better) Translates to: HHTGFISPENHREKLKGSLACQG*VLAECP Trigger: AGGGCACTCTGCAAGAACCCAGCCCTGGCAGGCCAA...GGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| 3UTR-3UTR TCA 90 bp | CACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCAGGAGGCCCAAGGGACCTGCCTaGCTGCTCACTTCTGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: HREKLKGSISPHPKFVRRPKGPA*LLTSAF Trigger: GAAGGCAGAAGTGAGCAGTCAGGCAGGTCCCTTGGG...CCTCCTGACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| 3UTR-3UTR GCA 90 bp | AACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCAGGGGCCCCCAAGGGACCTaGCTGACTGCTCACTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: NHREKLKGSISPHPKFVRGPQGT*LTAHFC Trigger: GCAGAAGTGAGCAGTCAGGCAGGTCCCTTGGGGGCC...CCTGACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| 3UTR-3UTR GCA 90 bp | CCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTTCACAGTCCTTGGCCTaGCAGGGCTGGGTTCTTGCA | + |
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Preference number: 2 (lower is better) Translates to: PENHREKLKGSISPHPKFSQSLA*QGWVLA Trigger: TGCAAGAACCCAGCCCTGGCAGGCCAAGGACTGTGA...AAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| 3UTR-3UTR GCA 90 bp | CACCACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCAGGGACCTGCCTGACTaGTCACTTCTGCCTTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: HHTGFISPENHREKLKGSRDLPD*SLLPSD Trigger: ATCAGAAGGCAGAAGTGAGCAGTCAGGCAGGTCCCT...GGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR GCA 90 bp | CTGAGTCTCCAGAGAACAGTTGACAGGAGCCCTACAGAGGGGCCGCTGCAGCCACGGGTGTGGGGGCCTTaGCGAGACTCTCAGCGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LSLQRTVDRSPTEGPLQPRVWGP*RDSQRQ Trigger: CTGACGCTGAGAGTCTCGGCAAGGCCCCCACACCCG...TGGCTGCAGCGGCCCCTCTGTAGGGCTCCTGTCAACTGTTCTCTGGAGACTCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | GCCAGTCTGAGTCTCCAGAGAACAGTTGACAGGAGCCCTACAGAGGGGCCGCTGCTCCTGGGTCCGGGCTaGTGGCTCTGTGGGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: ASLSLQRTVDRSPTEGPLLLGPG*WLCGVC Trigger: ACAGACCCCACAGAGCCACCAGCCCGGACCCAGGAG...CAGCGGCCCCTCTGTAGGGCTCCTGTCAACTGTTCTCTGGAGACTCAGACTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | AAGTTTGTCAGGAGGCCCCCAAGGGACCTGCCTGACTGCTCACTTCTGCCTTCTCTGGGTCCGGGCTGGTaGCTCTGTGGGGTCTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: KFVRRPPRDLPDCSLLPSLGPGW*LCGVCG Trigger: ACCACAGACCCCACAGAGCCACCAGCCCGGACCCAG...AGAAGGCAGAAGTGAGCAGTCAGGCAGGTCCCTTGGGGGCCTCCTGACAAACTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR TCA 90 bp | CATATAGCCAGTCTGAGTCTCCAGAGAACAGTTGACAGGAGCCCTACAGAGGGGAGCGGTAGATGCCACTaGGGGTGGCCCGCTGACCCG | + |
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Preference number: 4 (lower is better) Translates to: HIASLSLQRTVDRSPTEGSGRCH*GWPADP Trigger: CGGGTCAGCGGGCCACCCTCAGTGGCATCTACCGCT...CCCCTCTGTAGGGCTCCTGTCAACTGTTCTCTGGAGACTCAGACTGGCTATATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR GCA 90 bp | AGGGCTGGGTTCTTGCAGAGTGCCCTAGGTCATATAGCCAGTCTGAGTCTCCAGGGGCCCTTGGTGCCCTaGGCACCTGTGCGTTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: RAGFLQSALGHIASLSLQGPLVP*APVRLV Trigger: CACCAAACGCACAGGTGCGCAGGGCACCAAGGGCCC...CTGGAGACTCAGACTGGCTATATGACCTAGGGCACTCTGCAAGAACCCAGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | TCCCCACATCCCAAGTTTGTCAGGAGGCCCCCAAGGGACCTGCCTGACTGCTCAAGCTGTAAGGGGGCTTaGTGGGCTCTGCAGAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: SPHPKFVRRPPRDLPDCSSCKGA*WALQKE Trigger: CTCCTTCTGCAGAGCCCACCAAGCCCCCTTACAGCT...TGAGCAGTCAGGCAGGTCCCTTGGGGGCCTCCTGACAAACTTGGGATGTGGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | TCCCCACATCCCAAGTTTGTCAGGAGGCCCCCAAGGGACCTGCCTGACTGCTCAGGGCTGGTGGCTCTGTaGGGTCTGTGGTCTATCTTG | + |
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Preference number: 4 (lower is better) Translates to: SPHPKFVRRPPRDLPDCSGLVAL*GLWSIL Trigger: CAAGATAGACCACAGACCCCACAGAGCCACCAGCCC...TGAGCAGTCAGGCAGGTCCCTTGGGGGCCTCCTGACAAACTTGGGATGTGGGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR GCA 90 bp | AAGGGTTCCATTTCCCCACATCCCAAGTTTGTCAGGAGGCCCCCAAGGGACCTGTCCAGTAGCTGCCCTTaGCTGGCTTGCGGTCATCAC | + |
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Preference number: 4 (lower is better) Translates to: KGSISPHPKFVRRPPRDLSSSCP*LACGHH Trigger: GTGATGACCGCAAGCCAGGCAAGGGCAGCTACTGGA...CAGGTCCCTTGGGGGCCTCCTGACAAACTTGGGATGTGGGGAAATGGAACCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR TCA 90 bp | GGGTTCTTGCAGAGTGCCCTAGGTCATATAGCCAGTCTGAGTCTCCAGAGAACAGAATGCTGGGCACGGTaGGGGCGAGGTAGCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: GFLQSALGHIASLSLQRTECWAR*GRGSFR Trigger: TCTGAAGCTACCTCGCCCTCACCGTGCCCAGCATTC...TGTTCTCTGGAGACTCAGACTGGCTATATGACCTAGGGCACTCTGCAAGAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR TCA 90 bp | GGGTTCTTGCAGAGTGCCCTAGGTCATATAGCCAGTCTGAGTCTCCAGAGAACATCCAGGGGTGGGGACTaGAGAGACCAGGAGGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: GFLQSALGHIASLSLQRTSRGGD*RDQEVF Trigger: GAACACCTCCTGGTCTCTTCAGTCCCCACCCCTGGA...TGTTCTCTGGAGACTCAGACTGGCTATATGACCTAGGGCACTCTGCAAGAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | CCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGGTCTTGGGGGCTCCTaGGTCCGGGCTGGTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PENHREKLKGSISPHPKFGLGGS*VRAGGS Trigger: AGAGCCACCAGCCCGGACCCAGGAGCCCCCAAGACC...AAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | AGGGCTGGGTTCTTGCAGAGTGCCCTAGGTCATATAGCCAGTCTGAGTCTCCAGGTTTGGCACCTCTTGTaGGAATGGGCACAGTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: RAGFLQSALGHIASLSLQVWHLL*EWAQSA Trigger: GGCAGACTGTGCCCATTCCCACAAGAGGTGCCAAAC...CTGGAGACTCAGACTGGCTATATGACCTAGGGCACTCTGCAAGAACCCAGCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | CACCACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCCCACCCAGGGTTCTTTaGAGTCAGCCGGCAGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: HHTGFISPENHREKLKGSPPRVL*SQPAGA Trigger: TGCCCCTGCCGGCTGACTCCAAAGAACCCTGGGTGG...GGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR TCA 90 bp | CACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTGGCCCGGTGAGAGGCTaGAGGTGTCGAGGATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: HTGFISPENHREKLKGSIGPVRG*RCRGSR Trigger: CCTGGATCCTCGACACCTTCAGCCTCTCACCGGGCC...AATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | CATATAGCCAGTCTGAGTCTCCAGAGAACAGTTGACAGGAGCCCTACAGAGGGGTTCAGAGAGCTCCCTTaGGCCTCCAGACTTTGCCGA | + |
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Preference number: 4 (lower is better) Translates to: HIASLSLQRTVDRSPTEGFRELP*ASRLCR Trigger: TCGGCAAAGTCTGGAGGCCCAAGGGAGCTCTCTGAA...CCCCTCTGTAGGGCTCCTGTCAACTGTTCTCTGGAGACTCAGACTGGCTATATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR TCA 90 bp | AACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCAGGCTGAGGGTGGCCCGCTaGCCCGGTGAACTCTGGATA | + |
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Preference number: 4 (lower is better) Translates to: NHREKLKGSISPHPKFVRLRVAR*PGELWI Trigger: TATCCAGAGTTCACCGGGTCAGCGGGCCACCCTCAG...CCTGACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR GCA 90 bp | CCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTTGCCCTTGCCTGGCTTaGGGTCATCACGAGGCACCT | + |
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Preference number: 4 (lower is better) Translates to: PENHREKLKGSISPHPKFCPCLA*GHHEAP Trigger: AGGTGCCTCGTGATGACCGCAAGCCAGGCAAGGGCA...AAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | AACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCAGGGTAGCTGCCCTTGCCTaGCTTGCGGTCATCACGAGG | + |
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Preference number: 4 (lower is better) Translates to: NHREKLKGSISPHPKFVRVAALA*LAVITR Trigger: CCTCGTGATGACCGCAAGCCAGGCAAGGGCAGCTAC...CCTGACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | CACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCAGGAGGTCGAGGATCCAGGGGTaGGGACTGAAGAGACCAGGA | + |
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Preference number: 4 (lower is better) Translates to: HREKLKGSISPHPKFVRRSRIQG*GLKRPG Trigger: TCCTGGTCTCTTCAGTCCCCACCCCTGGATCCTCGA...CCTCCTGACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR TCA 90 bp | CCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTAGGCAAAGCGGCCCATaGTGTAGCGGTAGATGCCAC | + |
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Preference number: 4 (lower is better) Translates to: PENHREKLKGSISPHPKFRQSGP*CSGRCH Trigger: GTGGCATCTACCGCTACATCATGGGCCGCTTTGCCT...AAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR GCA 90 bp | CACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTGGGCTTGGTGGGCTCTaGAGAAGGAGCCAAGGATTC | + |
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Preference number: 4 (lower is better) Translates to: HTGFISPENHREKLKGSIGLGGL*RRSQGF Trigger: GAATCCTTGGCTCCTTCTGCAGAGCCCACCAAGCCC...AATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR GCA 90 bp | CACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTACAGGTTATGGCGGATaGTGTTTTGCCAGCCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: HTGFISPENHREKLKGSITGYGG*CFASPA Trigger: GGCCGGGCTGGCAAAACAGCATCCGCCATAACCTGT...AATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR TCA 90 bp | GAGAACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCGACGTCACTGGTTGTTaGGCTCATGTTGGCTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: ENHREKLKGSISPHPKFVDVTGC*AHVGWQ Trigger: TTGCCAGCCAACATGAGCTCAACAACCAGTGACGTC...GACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CCA 90 bp | GAGAACCACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCGAGGTGTTCAAGGCCTaGGTCAGTCCCCATACAGAA | + |
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Preference number: 4 (lower is better) Translates to: ENHREKLKGSISPHPKFVEVFKA*VSPHTE Trigger: TTCTGTATGGGGACTGACCCAGGCCTTGAACACCTC...GACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTGGTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 90 bp | GTCTTGGGGGCTCCTGGGTCCGGGCTGGTGGCTCTGTGGGGTCTGTaGTCTATCTTGACAGGGCCCTTGGTGCCCTGCGCACCTGTGCGT | + |
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Preference number: 5 (lower is better) Translates to: VLGAPGSGLVALWGL*SILTGPLVPCAPVR Trigger: ACGCACAGGTGCGCAGGGCACCAAGGGCCCTGTCAAGATAGACCACAGACCCCACAGAGCCACCAGCCCGGACCCAGGAGCCCCCAAGAC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 90 bp | CAGAACCTCCCTGGACAGGGAAGCTCCCAGCCACCCAGGGTTCTTTaGAGTCAGCCGGCAGGGGCAGTGGGGCCCGGTGAGAGGCTGAAG | + |
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Preference number: 5 (lower is better) Translates to: QNLPGQGSSQPPRVL*SQPAGAVGPGERLK Trigger: CTTCAGCCTCTCACCGGGCCCCACTGCCCCTGCCGGCTGACTCCAAAGAACCCTGGGTGGCTGGGAGCTTCCCTGTCCAGGGAGGTTCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 90 bp | GCAGTGGGGCCCGGTGAGAGGCTGAAGGTGTCGAGGATCCAGGGGTaGGGACTGAAGAGACCAGGAGGTGTTCAAGGCCTGGGTCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: AVGPGERLKVSRIQG*GLKRPGGVQGLGQS Trigger: GGACTGACCCAGGCCTTGAACACCTCCTGGTCTCTTCAGTCCCCACCCCTGGATCCTCGACACCTTCAGCCTCTCACCGGGCCCCACTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 90 bp | GGCACTGGTAGCTGCTCCCAACGCTCTCAGGAGCCACACCGGGTGTaGGGGCCTTGCCGAGACTCTCAGCGTCAGAGAAGGCAGATGAAA | + |
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Preference number: 5 (lower is better) Translates to: GTGSCSQRSQEPHRV*GPCRDSQRQRRQMK Trigger: TTTCATCTGCCTTCTCTGACGCTGAGAGTCTCGGCAAGGCCCCCACACCCGGTGTGGCTCCTGAGAGCGTTGGGAGCAGCTACCAGTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS GCA 90 bp | CAGTCCCCATACAGAAATTCAGTGTCTGCATCCGGCACTGGTAGCTaGTCCCAACGCTCTCAGGAGCCACACCGGGTGTGGGGGCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: QSPYRNSVSASGTGS*SQRSQEPHRVWGPC Trigger: GCAAGGCCCCCACACCCGGTGTGGCTCCTGAGAGCGTTGGGAGCAGCTACCAGTGCCGGATGCAGACACTGAATTTCTGTATGGGGACTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | GCCAGTCTGAGTCTCCAGAGAACAGTTGACAGGAGCCCTACAGAGGGGCCGCTGGGGGTTTGGCACCTCTaGTGGGAATGGGCACAGTCT | + |
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Preference number: 5 (lower is better) Translates to: ASLSLQRTVDRSPTEGPLGVWHL*WEWAQS Trigger: AGACTGTGCCCATTCCCACAAGAGGTGCCAAACCCC...CAGCGGCCCCTCTGTAGGGCTCCTGTCAACTGTTCTCTGGAGACTCAGACTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS TCA 90 bp | CTCTTTGGGTCCAGTGGGCAGTTGGGGCCTGACGTCACTGGTTGTTaGGCTCATGTTGGCTGGCAAAGACCCCATCAGACCCTCAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: LFGSSGQLGPDVTGC*AHVGWQRPHQTLKA Trigger: AGCTTTGAGGGTCTGATGGGGTCTTTGCCAGCCAACATGAGCTCAACAACCAGTGACGTCAGGCCCCAACTGCCCACTGGACCCAAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS TCA 90 bp | ACTTTGCCGAGCACATCTCTTTGGGTCCAGTGGGCAGTTGGGGCCTaGCGTCACTGGTTGTTGAGCTCATGTTGGCTGGCAAAGACCCCA | + |
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Preference number: 5 (lower is better) Translates to: TLPSTSLWVQWAVGA*RHWLLSSCWLAKTP Trigger: TGGGGTCTTTGCCAGCCAACATGAGCTCAACAACCAGTGACGTCAGGCCCCAACTGCCCACTGGACCCAAAGAGATGTGCTCGGCAAAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 90 bp | CCTCCAGACTTTGCCGAGCACATCTCTTTGGGTCCAGTGGGCAGTTaGGGCCTGACGTCACTGGTTGTTGAGCTCATGTTGGCTGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: PPDFAEHISLGPVGS*GLTSLVVELMLAGK Trigger: TTTGCCAGCCAACATGAGCTCAACAACCAGTGACGTCAGGCCCCAACTGCCCACTGGACCCAAAGAGATGTGCTCGGCAAAGTCTGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 90 bp | TGTTGGCTGGCAAAGACCCCATCAGACCCTCAAAGCTTAAGCCCTTaGGGTTTGGCACCTCTTGTGGGAATGGGCACAGTCTGCCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: CWLAKTPSDPQSLSP*GLAPLVGMGTVCQL Trigger: CAACTGGCAGACTGTGCCCATTCCCACAAGAGGTGCCAAACCCCAAGGGCTTAAGCTTTGAGGGTCTGATGGGGTCTTTGCCAGCCAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | CCACATCCCAAGTTTGTCAGGAGGCCCCCAAGGGACCTGCCTGACTGCTCACTTTTGACGAAACACTCGTaGAGAGACAGGTTATGGCGG | + |
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Preference number: 5 (lower is better) Translates to: PHPKFVRRPPRDLPDCSLLTKHS*RDRLWR Trigger: CCGCCATAACCTGTCTCTCAACGAGTGTTTCGTCAA...AAGTGAGCAGTCAGGCAGGTCCCTTGGGGGCCTCCTGACAAACTTGGGATGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | CACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTCTGCCCTTGCCTGGCTaGCGGTCATCACGAGGCACC | + |
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Preference number: 5 (lower is better) Translates to: HTGFISPENHREKLKGSILPLPG*RSSRGT Trigger: GGTGCCTCGTGATGACCGCAAGCCAGGCAAGGGCAG...AATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | CACAGAGAAAAGCTTAAGGGTTCCATTTCCCCACATCCCAAGTTTGTCAGGAGGATCTTGACAGGGCCCTaGGTGCCCTGCGCACCTGTG | + |
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Preference number: 5 (lower is better) Translates to: HREKLKGSISPHPKFVRRILTGP*VPCAPV Trigger: CACAGGTGCGCAGGGCACCAAGGGCCCTGTCAAGAT...CCTCCTGACAAACTTGGGATGTGGGGAAATGGAACCCTTAAGCTTTTCTCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | ACCACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCAGGCACAGTCTGCCAGTaGTGGTCTTGGGGGCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: TTPALLALRTTEKSLRVPGTVCQ*WSWGLL Trigger: CAGGAGCCCCCAAGACCACAACTGGCAGACTGTGCC...TGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | AGGGCTGGGTTCTTGCAGAGTGCCCTAGGTCATATAGCCAGTCTGAGTCTCCAGTCAAAGCTTAAGCCCTaGGGGTTTGGCACCTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: RAGFLQSALGHIASLSLQSKLKP*GFGTSC Trigger: ACAAGAGGTGCCAAACCCCAAGGGCTTAAGCTTTGA...CTGGAGACTCAGACTGGCTATATGACCTAGGGCACTCTGCAAGAACCCAGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | GGGTTCTTGCAGAGTGCCCTAGGTCATATAGCCAGTCTGAGTCTCCAGAGAACAGTTGTTGAGCTCATGTaGGCTGGCAAAGACCCCATC | + |
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Preference number: 5 (lower is better) Translates to: GFLQSALGHIASLSLQRTVVELM*AGKDPI Trigger: GATGGGGTCTTTGCCAGCCAACATGAGCTCAACAAC...TGTTCTCTGGAGACTCAGACTGGCTATATGACCTAGGGCACTCTGCAAGAACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | CACACCGGCTTTATTAGCCCTGAGAACCACAGAGAAAAGCTTAAGGGTTCCATTCTTCAGAGAGCTCCCTaGGGCCTCCAGACTTTGCCG | + |
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Preference number: 5 (lower is better) Translates to: HTGFISPENHREKLKGSILQRAP*GLQTLP Trigger: CGGCAAAGTCTGGAGGCCCAAGGGAGCTCTCTGAAG...AATGGAACCCTTAAGCTTTTCTCTGTGGTTCTCAGGGCTAATAAAGCCGGTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS-3UTR CAA 90 bp | TTCTTGCAGAGTGCCCTAGGTCATATAGCCAGTCTGAGTCTCCAGAGAACAGTTTTAAGCCCTTGGGGTTaGGCACCTCTTGTGGGAATG | + |
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Preference number: 5 (lower is better) Translates to: FLQSALGHIASLSLQRTVLSPWG*APLVGM Trigger: CATTCCCACAAGAGGTGCCAAACCCCAAGGGCTTAA...AACTGTTCTCTGGAGACTCAGACTGGCTATATGACCTAGGGCACTCTGCAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 72 bp | GCTCCTGGGTCCGGGCTGGTGGCTCTGTGGGGTCTGTaGTCTATCTTGACAGGGCCCTTGGTGCCCTGCGCA | + |
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Preference number: 6 (lower is better) Translates to: APGSGLVALWGL*SILTGPLVPCA Trigger: TGCGCAGGGCACCAAGGGCCCTGTCAAGATAGACCACAGACCCCACAGAGCCACCAGCCCGGACCCAGGAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS TCA 72 bp | CAGGGCCCTTGGTGCCCTGCGCACCTGTGCGTTTGGTaGAGCGTCTGCGGCGACGGAGAAAGCTGCCATGCT | + |
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Preference number: 6 (lower is better) Translates to: QGPWCPAHLCVW*SVCGDGESCHA Trigger: AGCATGGCAGCTTTCTCCGTCGCCGCAGACGCTTCACCAAACGCACAGGTGCGCAGGGCACCAAGGGCCCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS TCA 72 bp | CCGGGCTGGTGGCTCTGTGGGGTCTGTGGTCTATCTTaGCAGGGCCCTTGGTGCCCTGCGCACCTGTGCGTT | + |
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Preference number: 6 (lower is better) Translates to: PGWWLCGVCGLS*QGPWCPAHLCV Trigger: AACGCACAGGTGCGCAGGGCACCAAGGGCCCTGTCAAGATAGACCACAGACCCCACAGAGCCACCAGCCCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 72 bp | AGCTGCTCCCAACGCTCTCAGGAGCCACACCGGGTGTaGGGGCCTTGCCGAGACTCTCAGCGTCAGAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: SCSQRSQEPHRV*GPCRDSQRQRR Trigger: CCTTCTCTGACGCTGAGAGTCTCGGCAAGGCCCCCACACCCGGTGTGGCTCCTGAGAGCGTTGGGAGCAGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 72 bp | TCCGGGCTGGTGGCTCTGTGGGGTCTGTGGTCTATCTaGACAGGGCCCTTGGTGCCCTGCGCACCTGTGCGT | + |
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Preference number: 6 (lower is better) Translates to: SGLVALWGLWSI*TGPLVPCAPVR Trigger: ACGCACAGGTGCGCAGGGCACCAAGGGCCCTGTCAAGATAGACCACAGACCCCACAGAGCCACCAGCCCGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 90 bp | GCTCCTGGGTCCGGGCTGGTGGCTCTGTGGGGTCTGTGGTCTATCTaGACAGGGCCCTTGGTGCCCTGCGCACCTGTGCGTTTGGTGAAG | + |
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Preference number: 6 (lower is better) Translates to: APGSGLVALWGLWSI*TGPLVPCAPVRLVK Trigger: CTTCACCAAACGCACAGGTGCGCAGGGCACCAAGGGCCCTGTCAAGATAGACCACAGACCCCACAGAGCCACCAGCCCGGACCCAGGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 72 bp | TTGACAGGGCCCTTGGTGCCCTGCGCACCTGTGCGTTaGGTGAAGCGTCTGCGGCGACGGAGAAAGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: LTGPLVPCAPVR*VKRLRRRRKLP Trigger: TGGCAGCTTTCTCCGTCGCCGCAGACGCTTCACCAAACGCACAGGTGCGCAGGGCACCAAGGGCCCTGTCAA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CCA 72 bp | CCCGGTGAGAGGCTGAAGGTGTCGAGGATCCAGGGGTaGGGACTGAAGAGACCAGGAGGTGTTCAAGGCCTG | + |
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Preference number: 6 (lower is better) Translates to: PGERLKVSRIQG*GLKRPGGVQGL Trigger: CAGGCCTTGAACACCTCCTGGTCTCTTCAGTCCCCACCCCTGGATCCTCGACACCTTCAGCCTCTCACCGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 72 bp | CCAACGCTCTCAGGAGCCACACCGGGTGTGGGGGCCTaGCCGAGACTCTCAGCGTCAGAGAAGGCAGATGAA | + |
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Preference number: 6 (lower is better) Translates to: PTLSGATPGVGA*PRLSASEKADE Trigger: TTCATCTGCCTTCTCTGACGCTGAGAGTCTCGGCAAGGCCCCCACACCCGGTGTGGCTCCTGAGAGCGTTGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS GCA 72 bp | CAACGCTCTCAGGAGCCACACCGGGTGTGGGGGCCTTaGCGAGACTCTCAGCGTCAGAGAAGGCAGATGAAA | + |
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Preference number: 6 (lower is better) Translates to: QRSQEPHRVWGP*RDSQRQRRQMK Trigger: TTTCATCTGCCTTCTCTGACGCTGAGAGTCTCGGCAAGGCCCCCACACCCGGTGTGGCTCCTGAGAGCGTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 72 bp | TCCCTTGGGCCTCCAGACTTTGCCGAGCACATCTCTTaGGGTCCAGTGGGCAGTTGGGGCCTGACGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: SLGPPDFAEHIS*GPVGSWGLTSL Trigger: CAGTGACGTCAGGCCCCAACTGCCCACTGGACCCAAAGAGATGTGCTCGGCAAAGTCTGGAGGCCCAAGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS TCA 72 bp | GCGGTAGATGCCACTGAGGGTGGCCCGCTGACCCGGTaGACTCTGGATAGCCATGGCAATCAGGGCTATGTA | + |
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Preference number: 6 (lower is better) Translates to: AVDATEGGPLTR*TLDSHGNQGYV Trigger: TACATAGCCCTGATTGCCATGGCTATCCAGAGTTCACCGGGTCAGCGGGCCACCCTCAGTGGCATCTACCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 90 bp | TCAGAGAGCTCCCTTGGGCCTCCAGACTTTGCCGAGCACATCTCTTaGGGTCCAGTGGGCAGTTGGGGCCTGACGTCACTGGTTGTTGAG | + |
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Preference number: 6 (lower is better) Translates to: SESSLGPPDFAEHIS*GPVGSWGLTSLVVE Trigger: CTCAACAACCAGTGACGTCAGGCCCCAACTGCCCACTGGACCCAAAGAGATGTGCTCGGCAAAGTCTGGAGGCCCAAGGGAGCTCTCTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS TCA 72 bp | TCCAGTGGGCAGTTGGGGCCTGACGTCACTGGTTGTTaGGCTCATGTTGGCTGGCAAAGACCCCATCAGACC | + |
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Preference number: 6 (lower is better) Translates to: SSGQLGPDVTGC*AHVGWQRPHQT Trigger: GGTCTGATGGGGTCTTTGCCAGCCAACATGAGCTCAACAACCAGTGACGTCAGGCCCCAACTGCCCACTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS GCA 72 bp | GGTAGCTTCAGAGAGCTCCCTTGGGCCTCCAGACTTTaGCGAGCACATCTCTTTGGGTCCAGTGGGCAGTTG | + |
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Preference number: 6 (lower is better) Translates to: GSFRELPWASRL*RAHLFGSSGQL Trigger: CAACTGCCCACTGGACCCAAAGAGATGTGCTCGGCAAAGTCTGGAGGCCCAAGGGAGCTCTCTGAAGCTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS GCA 72 bp | TACAGAAATTCAGTGTCTGCATCCGGCACTGGTAGCTaGTCCCAACGCTCTCAGGAGCCACACCGGGTGTGG | + |
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Preference number: 6 (lower is better) Translates to: YRNSVSASGTGS*SQRSQEPHRVW Trigger: CCACACCCGGTGTGGCTCCTGAGAGCGTTGGGAGCAGCTACCAGTGCCGGATGCAGACACTGAATTTCTGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS TCA 72 bp | AGCACATCTCTTTGGGTCCAGTGGGCAGTTGGGGCCTaGCGTCACTGGTTGTTGAGCTCATGTTGGCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: STSLWVQWAVGA*RHWLLSSCWLA Trigger: TGCCAGCCAACATGAGCTCAACAACCAGTGACGTCAGGCCCCAACTGCCCACTGGACCCAAAGAGATGTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 72 bp | ACCCCATCAGACCCTCAAAGCTTAAGCCCTTGGGGTTaGGCACCTCTTGTGGGAATGGGCACAGTCTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: TPSDPQSLSPWG*APLVGMGTVCQ Trigger: CTGGCAGACTGTGCCCATTCCCACAAGAGGTGCCAAACCCCAAGGGCTTAAGCTTTGAGGGTCTGATGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 90 bp | CTGGCAAAGACCCCATCAGACCCTCAAAGCTTAAGCCCTTGGGGTTaGGCACCTCTTGTGGGAATGGGCACAGTCTGCCAGTTGTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: LAKTPSDPQSLSPWG*APLVGMGTVCQLWS Trigger: AGACCACAACTGGCAGACTGTGCCCATTCCCACAAGAGGTGCCAAACCCCAAGGGCTTAAGCTTTGAGGGTCTGATGGGGTCTTTGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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| CDS CAA 90 bp | ATGTTGGCTGGCAAAGACCCCATCAGACCCTCAAAGCTTAAGCCCTaGGGGTTTGGCACCTCTTGTGGGAATGGGCACAGTCTGCCAGTT | + |
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Preference number: 6 (lower is better) Translates to: MLAGKDPIRPSKLKP*GFGTSCGNGHSLPV Trigger: AACTGGCAGACTGTGCCCATTCCCACAAGAGGTGCCAAACCCCAAGGGCTTAAGCTTTGAGGGTCTGATGGGGTCTTTGCCAGCCAACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099200.3 |
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