Pregenerated sensors for FOXR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000074397Ensembl transcript IDs: ENSMUST00000098837.3, ENSMUST00000215375.3, ENSMUST00000215980.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGAGTTCTAGGACAGCCAGCGCTACACACAGAAACCCTGTCACTTaGGAGGCAGTGGCAAGGAAGGTCTCTGAATTCAAGGCTAGTCCA | + |
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Preference number: 1 (lower is better) Translates to: VSSRTASATHRNPVT*EAVARKVSEFKASP Trigger: TGGACTAGCCTTGAATTCAGAGACCTTCCTTGCCACTGCCTCCCAAGTGACAGGGTTTCTGTGTGTAGCGCTGGCTGTCCTAGAACTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR TCA 90 bp | TTTGAACTCAGGACCTTCGGAAGAGCAGTTGGCGCTCTTAACCACTaGGCCATCTTGCCAGCCCGAACCATCGTTTTTCTTTTTCCTTCT | + |
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Preference number: 1 (lower is better) Translates to: FELRTFGRAVGALNH*AILPARTIVFLFPS Trigger: AGAAGGAAAAAGAAAAACGATGGTTCGGGCTGGCAAGATGGCTCAGTGGTTAAGAGCGCCAACTGCTCTTCCGAAGGTCCTGAGTTCAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR-3UTR TCA 90 bp | AATAGGATTAAACCACCCAAGATAAACACTCTGAGACACGGGGCTCTTTGTCTGTCAGTGAGGCTTCCATaGCCCTTGGAGGTACAAGGT | + |
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Preference number: 2 (lower is better) Translates to: NRIKPPKINTLRHGALCLSVRLP*PLEVQG Trigger: ACCTTGTACCTCCAAGGGTCATGGAAGCCTCACTGA...CAGACAAAGAGCCCCGTGTCTCAGAGTGTTTATCTTGGGTGGTTTAATCCTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR-3UTR GCA 90 bp | ACACAACACACAGAGACACACACAATGCAAATTCTCAGTGAGGCTTCCATGACCAGGTACAAGGTTCTGTaGCAGGCAGGACAGTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: TQHTETHTMQILSEASMTRYKVL*QAGQSK Trigger: CTTAGACTGTCCTGCCTGGCACAGAACCTTGTACCT...GGTCATGGAAGCCTCACTGAGAATTTGCATTGTGTGTGTCTCTGTGTGTTGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR-3UTR CCA 90 bp | CTGGTTTGCATAGTGAGTTCTAGGACAGCCAGCGCTACACACAGAAACCCTGTCAAAGCGGAGATGTTTTaGGGGATGCTGGATTCTATT | + |
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Preference number: 2 (lower is better) Translates to: LVCIVSSRTASATHRNPVKAEMF*GMLDSI Trigger: AATAGAATCCAGCATCCCCCAAAACATCTCCGCTTT...GACAGGGTTTCTGTGTGTAGCGCTGGCTGTCCTAGAACTCACTATGCAAACCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR TCA 72 bp | AGGATGACCTTAAACCCCTGGCCCTCCTCCTACCTCTaGATCCTGAGTGCTGGGATCACAGGCCTGCACCAC | + |
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Preference number: 3 (lower is better) Translates to: RMTLNPWPSSYL*ILSAGITGLHH Trigger: GTGGTGCAGGCCTGTGATCCCAGCACTCAGGATTCAGAGGTAGGAGGAGGGCCAGGGGTTTAAGGTCATCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR TCA 72 bp | CTGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCAGGACCTTCGGAAGAGCAGTTGGCGCTCT | + |
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Preference number: 3 (lower is better) Translates to: LVVVSHHVVAGI*TQDLRKSSWRS Trigger: AGAGCGCCAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR GCA 72 bp | GACCTCATTACTGGTGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCAGGACCTTCGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLITGGCEPPCG*WDLNSGPSEEQ Trigger: CTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCAGTAATGAGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR-3UTR CAA 90 bp | GCTGACTTCAGAAACACCAGAAGAGGGCAGCAGACCTCATTACTGGTGGTTGTGCGAGGGCTGGAGATTTaGACAGTGGGAACAAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: ADFRNTRRGQQTSLLVVVRGLEI*TVGTKQ Trigger: CTGCTTTGTTCCCACTGTCAAAATCTCCAGCCCTCG...CACAACCACCAGTAATGAGGTCTGCTGCCCTCTTCTGGTGTTTCTGAAGTCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR TCA 72 bp | AGACACACACAATGCAAATTCTCAGTGAGGCTTCCATaGCCCTTGGAGGTACAAGGTTCTGTGCCAGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: RHTQCKFSVRLP*PLEVQGSVPGR Trigger: CCTGCCTGGCACAGAACCTTGTACCTCCAAGGGTCATGGAAGCCTCACTGAGAATTTGCATTGTGTGTGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR GCA 72 bp | GAAGAGCAGTTGGCGCTCTTAACCACTGAGCCATCTTaGCAGCCCGAACCATCGTTTTTCTTTTTCCTTCTT | + |
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Preference number: 3 (lower is better) Translates to: EEQLALLTTEPS*QPEPSFFFFLL Trigger: AAGAAGGAAAAAGAAAAACGATGGTTCGGGCTGGCAAGATGGCTCAGTGGTTAAGAGCGCCAACTGCTCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR TCA 72 bp | ACAACACACAGAGACACACACAATGCAAATTCTCAGTaGGGCTTCCATGACCCTTGGAGGTACAAGGTTCTG | + |
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Preference number: 3 (lower is better) Translates to: TTHRDTHNANSQ*GFHDPWRYKVL Trigger: CAGAACCTTGTACCTCCAAGGGTCATGGAAGCCTCACTGAGAATTTGCATTGTGTGTGTCTCTGTGTGTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR GCA 90 bp | TCTAGGACAGCCAGCGCTACACACAGAAACCCTGTCACTTGGGAGGCAGTGGCATACAGGGCAAGTTTCTaGTCGGCCTCGGACAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: SRTASATHRNPVTWEAVAYRASF*SASDKC Trigger: ACACTTGTCCGAGGCCGAGCAGAAACTTGCCCTGTA...TGCCACTGCCTCCCAAGTGACAGGGTTTCTGTGTGTAGCGCTGGCTGTCCTAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR GCA 90 bp | GAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTTGCTGCGACCTCCAGCTTaGCGGGAGGATACACCATGT | + |
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Preference number: 4 (lower is better) Translates to: EPPCGCWDLNSGPSEEQLLRPPA*REDTPC Trigger: ACATGGTGTATCCTCCCGGCAAGCTGGAGGTCGCAG...CAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CCA 90 bp | ACTCTGAGACACGGGGCTCTTTGTCTGATACCAGGGAAGACCTCCCTCACACTTTCTTTCAGGGCTGGCTaGAAGGCAGACAGCGCACTC | + |
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Preference number: 4 (lower is better) Translates to: TLRHGALCLIPGKTSLTLSFRAG*KADSAL Trigger: GAGTGCGCTGTCTGCCTTCCAGCCAGCCCTGAAAGA...AAGTGTGAGGGAGGTCTTCCCTGGTATCAGACAAAGAGCCCCGTGTCTCAGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| 3UTR CAA 72 bp | TGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTaGGCGCTCTTAACCACTGAGCCATCTTGCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: CWDLNSGPSEEQ*ALLTTEPSCQP Trigger: GGGCTGGCAAGATGGCTCAGTGGTTAAGAGCGCCAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR GCA 90 bp | GAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTTGGCTTCCTCTTCTGCCTaGAAGGAGGCAATGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: EPPCGCWDLNSGPSEEQLASSSA*KEAMAA Trigger: AGCAGCCATTGCCTCCTTGCAGGCAGAAGAGGAAGC...CAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR GCA 90 bp | GAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTTGGGGGAAGAGGCACTGTaGTTCTCCTCTGCTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: EPPCGCWDLNSGPSEEQLGEEAL*FSSASS Trigger: AGAGGAAGCAGAGGAGAAGCACAGTGCCTCTTCCCC...CAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CCA 90 bp | TGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGGCAGACAGCGCACTCTaGTCTTCCTCTTTCACTGCG | + |
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Preference number: 4 (lower is better) Translates to: CEPPCGCWDLNSGPSEEQADSAL*SSSFTA Trigger: CGCAGTGAAAGAGGAAGACCAGAGTGCGCTGTCTGC...CTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR GCA 90 bp | CTGGTTTGCATAGTGAGTTCTAGGACAGCCAGCGCTACACACAGAAACCCTGTCCTCTGCTTCCTCTTCTaGCTGCAAGGAGGCAATGGC | + |
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Preference number: 4 (lower is better) Translates to: LVCIVSSRTASATHRNPVLCFLF*LQGGNG Trigger: GCCATTGCCTCCTTGCAGGCAGAAGAGGAAGCAGAG...GACAGGGTTTCTGTGTGTAGCGCTGGCTGTCCTAGAACTCACTATGCAAACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CCA 90 bp | ACACAACACACAGAGACACACACAATGCAAATTCTCAGTGAGGCTTCCATGACCCCACGGATTCTCGAGTaGAGCCCTCCTCCCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: TQHTETHTMQILSEASMTPRILE*SPPPRC Trigger: GCACCTGGGAGGAGGGCTCCACTCGAGAATCCGTGG...GGTCATGGAAGCCTCACTGAGAATTTGCATTGTGTGTGTCTCTGTGTGTTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CCA 90 bp | ACACAACACACAGAGACACACACAATGCAAATTCTCAGTGAGGCTTCCATGACCCCAGAGCCTCCCCTCTaGGCTGATGGCTTGCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: TQHTETHTMQILSEASMTPEPPL*ADGLRK Trigger: CTTCCGCAAGCCATCAGCCCAGAGGGGAGGCTCTGG...GGTCATGGAAGCCTCACTGAGAATTTGCATTGTGTGTGTCTCTGTGTGTTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR TCA 90 bp | CCTTGGAGGTACAAGGTTCTGTGCCAGGCAGGACAGTCTAAGGGGCAGAAAGCGTATGTTCTTGAGCGCTaGGTAGGCATATATTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: PWRYKVLCQAGQSKGQKAYVLER*VGIYFA Trigger: GGCAAAATATATGCCTACTCAGCGCTCAAGAACATA...CGCTTTCTGCCCCTTAGACTGTCCTGCCTGGCACAGAACCTTGTACCTCCAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR GCA 90 bp | TGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGGGGACTGTTTCTGAGTaGCAAGGCAATCAGATGGAA | + |
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Preference number: 4 (lower is better) Translates to: CEPPCGCWDLNSGPSEEQGTVSE*QGNQME Trigger: TTCCATCTGATTGCCTTGGCACTCAGAAACAGTCCC...CTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CCA 90 bp | AATAGGATTAAACCACCCAAGATAAACACTCTGAGACACGGGGCTCTTTGTCTGTTCCTCTTTCAGGGCTaGCTGGAAGGCAGACAGCGC | + |
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Preference number: 4 (lower is better) Translates to: NRIKPPKINTLRHGALCLFLFQG*LEGRQR Trigger: GCGCTGTCTGCCTTCCAGCCAGCCCTGAAAGAGGAA...CAGACAAAGAGCCCCGTGTCTCAGAGTGTTTATCTTGGGTGGTTTAATCCTATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CCA 90 bp | GAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTTGATTGGGCTTAATGTCTaGACCATCTTTATCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: EPPCGCWDLNSGPSEEQLIGLNV*TIFIRV Trigger: AACCCTGATAAAGATGGTCCAGACATTAAGCCCAAT...CAACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS GCA 90 bp | TGGAGAGGGGGCCGGGACCAGAGCCTCCCCTCTGGGCTGATGGCTTaGGGAAGCCTCCACGGATTCTCGAGTGGAGCCCTCCTCCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: WRGGRDQSLPSGLMA*GSLHGFSSGALLPG Trigger: ACCTGGGAGGAGGGCTCCACTCGAGAATCCGTGGAGGCTTCCGCAAGCCATCAGCCCAGAGGGGAGGCTCTGGTCCCGGCCCCCTCTCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 |
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| CDS GCA 90 bp | GGTGTCCCTCCTCAGTCAACTTCCAGAGGCAGGATCGAGGCCCGGTaGTGGCCTCGACGCCCTGCCGACTGGCCGGCACTTTCTCAAAGC | + |
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Preference number: 5 (lower is better) Translates to: GVPPQSTSRGRIEAR*WPRRPADWPALSQS Trigger: GCTTTGAGAAAGTGCCGGCCAGTCGGCAGGGCGTCGAGGCCAGCACCGGGCCTCGATCCTGCCTCTGGAAGTTGACTGAGGAGGGACACC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215375.3 |
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| CDS CCA 90 bp | CAGATGGAAGTAATGGAGAGGGGGCCGGGACCAGAGCCTCCCCTCTaGGCTGATGGCTTGCGGAAGCCTCCACGGATTCTCGAGTGGAGC | + |
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Preference number: 5 (lower is better) Translates to: QMEVMERGPGPEPPL*ADGLRKPPRILEWS Trigger: GCTCCACTCGAGAATCCGTGGAGGCTTCCGCAAGCCATCAGCCCAGAGGGGAGGCTCTGGTCCCGGCCCCCTCTCCATTACTTCCATCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 |
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| CDS GCA 90 bp | AACTTCCAGAGGCAGGATCGAGGCCCGGTGCTGGCCTCGACGCCCTaGCGACTGGCCGGCACTTTCTCAAAGCTGTCTCGGAAACTGAGA | + |
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Preference number: 5 (lower is better) Translates to: NFQRQDRGPVLASTP*RLAGTFSKLSRKLR Trigger: TCTCAGTTTCCGAGACAGCTTTGAGAAAGTGCCGGCCAGTCGGCAGGGCGTCGAGGCCAGCACCGGGCCTCGATCCTGCCTCTGGAAGTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215375.3 |
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| CDS GCA 90 bp | GCCCTCCTCCCAGGTGCTAGGGGAAGAGGCACTGTGCTTCTCCTCTaGTTCCTCTTCTGCCTGCAAGGAGGCAATGGCTGCTGTACCTCC | + |
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Preference number: 5 (lower is better) Translates to: ALLPGARGRGTVLLL*FLFCLQGGNGCCTS Trigger: GGAGGTACAGCAGCCATTGCCTCCTTGCAGGCAGAAGAGGAAGCAGAGGAGAAGCACAGTGCCTCTTCCCCTAGCACCTGGGAGGAGGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 |
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| CDS GCA 90 bp | AGGCTCCTCCCAGGTGCTAGGGGAAGAGGCACTGTGCTTCTCCTCTaGTTCCTCTTCTGCCTGCAAGGAGGCAATGGCTGCTGTACCTCC | + |
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Preference number: 5 (lower is better) Translates to: RLLPGARGRGTVLLL*FLFCLQGGNGCCTS Trigger: GGAGGTACAGCAGCCATTGCCTCCTTGCAGGCAGAAGAGGAAGCAGAGGAGAAGCACAGTGCCTCTTCCCCTAGCACCTGGGAGGAGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215980.2 |
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| CDS GCA 90 bp | GGCTGGCTGGAAGGCAGACAGCGCACTCTGGTCTTCCTCTTTCACTaGGACCTCCAGCTTGCCGGGAGGATACACCATGTTTGGGTTCAC | + |
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Preference number: 5 (lower is better) Translates to: GWLEGRQRTLVFLFH*DLQLAGRIHHVWVH Trigger: GTGAACCCAAACATGGTGTATCCTCCCGGCAAGCTGGAGGTCGCAGTGAAAGAGGAAGACCAGAGTGCGCTGTCTGCCTTCCAGCCAGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS GCA 90 bp | CTAGGGGAAGAGGCACTGTGCTTCTCCTCTGCTTCCTCTTCTGCCTaGAAGGAGGCAATGGCTGCTGTACCTCCGAAGCTTCTGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: LGEEALCFSSASSSA*KEAMAAVPPKLLNS Trigger: GCTGTTCAGAAGCTTCGGAGGTACAGCAGCCATTGCCTCCTTGCAGGCAGAAGAGGAAGCAGAGGAGAAGCACAGTGCCTCTTCCCCTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS GCA 90 bp | CAGACAGCGCACTCTGGTCTTCCTCTTTCACTGCGACCTCCAGCTTaGCGGGAGGATACACCATGTTTGGGTTCACCCACATCCACAGAT | + |
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Preference number: 5 (lower is better) Translates to: QTAHSGLPLSLRPPA*REDTPCLGSPTSTD Trigger: ATCTGTGGATGTGGGTGAACCCAAACATGGTGTATCCTCCCGGCAAGCTGGAGGTCGCAGTGAAAGAGGAAGACCAGAGTGCGCTGTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS CCA 90 bp | TCCGAAGCTTCTGAACAGCTGTCTTCTTCCTCTTTCAGGGCTGGCTaGAAGGCAGACAGCGCACTCTGGTCTTCCTCTTTCACTGCGACC | + |
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Preference number: 5 (lower is better) Translates to: SEASEQLSSSSFRAG*KADSALWSSSFTAT Trigger: GGTCGCAGTGAAAGAGGAAGACCAGAGTGCGCTGTCTGCCTTCCAGCCAGCCCTGAAAGAGGAAGAAGACAGCTGTTCAGAAGCTTCGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS-3UTR CAA 90 bp | TCTAGGACAGCCAGCGCTACACACAGAAACCCTGTCACTTGGGAGGCAGTGGCAAACGACCCAGGAGAATaGGTATTTGAGGGACAGCTG | + |
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Preference number: 5 (lower is better) Translates to: SRTASATHRNPVTWEAVANDPGE*VFEGQL Trigger: CAGCTGTCCCTCAAATACCAATTCTCCTGGGTCGTT...TGCCACTGCCTCCCAAGTGACAGGGTTTCTGTGTGTAGCGCTGGCTGTCCTAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS GCA 90 bp | GTGCTTCTCCTCTGCTTCCTCTTCTGCCTGCAAGGAGGCAATGGCTaGTGTACCTCCGAAGCTTCTGAACAGCTGTCTTCTTCCTCTTTC | + |
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Preference number: 5 (lower is better) Translates to: VLLLCFLFCLQGGNG*CTSEASEQLSSSSF Trigger: GAAAGAGGAAGAAGACAGCTGTTCAGAAGCTTCGGAGGTACAGCAGCCATTGCCTCCTTGCAGGCAGAAGAGGAAGCAGAGGAGAAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS-3UTR CAA 90 bp | ACACAACACACAGAGACACACACAATGCAAATTCTCAGTGAGGCTTCCATGACCACTGCGACCTCCAGCTaGCCGGGAGGATACACCATG | + |
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Preference number: 5 (lower is better) Translates to: TQHTETHTMQILSEASMTTATSS*PGGYTM Trigger: CATGGTGTATCCTCCCGGCAAGCTGGAGGTCGCAGT...GGTCATGGAAGCCTCACTGAGAATTTGCATTGTGTGTGTCTCTGTGTGTTGTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS CCA 90 bp | ATCTTTGGGGACAGGGTAGGAGAAACTGTAACGACCCAGGAGAATTaGTATTTGAGGGACAGCTGGATTGTAAGTGGCGAAGGGGTAGGA | + |
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Preference number: 5 (lower is better) Translates to: IFGDRVGETVTTQEN*YLRDSWIVSGEGVG Trigger: TCCTACCCCTTCGCCACTTACAATCCAGCTGTCCCTCAAATACCAATTCTCCTGGGTCGTTACAGTTTCTCCTACCCTGTCCCCAAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CAA 90 bp | ACACAACACACAGAGACACACACAATGCAAATTCTCAGTGAGGCTTCCATGACCGAGGATACACCATGTTaGGGTTCACCCACATCCACA | + |
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Preference number: 5 (lower is better) Translates to: TQHTETHTMQILSEASMTEDTPC*GSPTST Trigger: TGTGGATGTGGGTGAACCCAAACATGGTGTATCCTC...GGTCATGGAAGCCTCACTGAGAATTTGCATTGTGTGTGTCTCTGTGTGTTGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS-3UTR CAA 90 bp | AATAGGATTAAACCACCCAAGATAAACACTCTGAGACACGGGGCTCTTTGTCTGTTTCCAAAGGCAGTTTaGGTGGTTCAACAAGTTGGA | + |
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Preference number: 5 (lower is better) Translates to: NRIKPPKINTLRHGALCLFPKAV*VVQQVG Trigger: TCCAACTTGTTGAACCACCAAAACTGCCTTTGGAAA...CAGACAAAGAGCCCCGTGTCTCAGAGTGTTTATCTTGGGTGGTTTAATCCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS CAA 90 bp | ATGGAGAGGGGGCCGGGACCAGAGCCTCCCCTCTGGGCTGATGGCTaGCGGAAGCCTCCACGGATTCTCGAGTGGAGCCCTCCTCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: MERGPGPEPPLWADG*RKPPRILEWSPPPR Trigger: CCTGGGAGGAGGGCTCCACTCGAGAATCCGTGGAGGCTTCCGCAAGCCATCAGCCCAGAGGGGAGGCTCTGGTCCCGGCCCCCTCTCCAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 |
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| CDS GCA 72 bp | GGCCGGGACCAGAGCCTCCCCTCTGGGCTGATGGCTTaGGGAAGCCTCCACGGATTCTCGAGTGGAGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: GRDQSLPSGLMA*GSLHGFSSGAL Trigger: GAGGGCTCCACTCGAGAATCCGTGGAGGCTTCCGCAAGCCATCAGCCCAGAGGGGAGGCTCTGGTCCCGGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 |
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| CDS GCA 72 bp | AGGCAGGATCGAGGCCCGGTGCTGGCCTCGACGCCCTaGCGACTGGCCGGCACTTTCTCAAAGCTGTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: RQDRGPVLASTP*RLAGTFSKLSR Trigger: CCGAGACAGCTTTGAGAAAGTGCCGGCCAGTCGGCAGGGCGTCGAGGCCAGCACCGGGCCTCGATCCTGCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215375.3 |
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| CDS CAA 72 bp | GGGCCGGGACCAGAGCCTCCCCTCTGGGCTGATGGCTaGCGGAAGCCTCCACGGATTCTCGAGTGGAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: GPGPEPPLWADG*RKPPRILEWSP Trigger: AGGGCTCCACTCGAGAATCCGTGGAGGCTTCCGCAAGCCATCAGCCCAGAGGGGAGGCTCTGGTCCCGGCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 |
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| CDS CCA 72 bp | GTAATGGAGAGGGGGCCGGGACCAGAGCCTCCCCTCTaGGCTGATGGCTTGCGGAAGCCTCCACGGATTCTC | + |
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Preference number: 6 (lower is better) Translates to: VMERGPGPEPPL*ADGLRKPPRIL Trigger: GAGAATCCGTGGAGGCTTCCGCAAGCCATCAGCCCAGAGGGGAGGCTCTGGTCCCGGCCCCCTCTCCATTAC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 |
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| CDS GCA 72 bp | GAAGGCAGACAGCGCACTCTGGTCTTCCTCTTTCACTaGGACCTCCAGCTTGCCGGGAGGATACACCATGTT | + |
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Preference number: 6 (lower is better) Translates to: EGRQRTLVFLFH*DLQLAGRIHHV Trigger: AACATGGTGTATCCTCCCGGCAAGCTGGAGGTCGCAGTGAAAGAGGAAGACCAGAGTGCGCTGTCTGCCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS TCA 72 bp | GCAAGGAGGCAATGGCTGCTGTACCTCCGAAGCTTCTaGACAGCTGTCTTCTTCCTCTTTCAGGGCTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: ARRQWLLYLRSF*TAVFFLFQGWL Trigger: CAGCCAGCCCTGAAAGAGGAAGAAGACAGCTGTTCAGAAGCTTCGGAGGTACAGCAGCCATTGCCTCCTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS GCA 72 bp | CACTCTGGTCTTCCTCTTTCACTGCGACCTCCAGCTTaGCGGGAGGATACACCATGTTTGGGTTCACCCACA | + |
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Preference number: 6 (lower is better) Translates to: HSGLPLSLRPPA*REDTPCLGSPT Trigger: TGTGGGTGAACCCAAACATGGTGTATCCTCCCGGCAAGCTGGAGGTCGCAGTGAAAGAGGAAGACCAGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000098837.3 ENSMUST00000215375.3 ENSMUST00000215980.2 |
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| CDS CAA 90 bp | AATCTTTGGGGACAGGGTAGGAGAAACTGTAACGACCCAGGAGAATaGGTATTTGAGGGACAGCTGGATTGTAAGTGGCGAAGGGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: NLWGQGRRNCNDPGE*VFEGQLDCKWRRGR Trigger: CCTACCCCTTCGCCACTTACAATCCAGCTGTCCCTCAAATACCAATTCTCCTGGGTCGTTACAGTTTCTCCTACCCTGTCCCCAAAGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS CCA 72 bp | GTAACGACCCAGGAGAATTGGTATTTGAGGGACAGCTaGATTGTAAGTGGCGAAGGGGTAGGAGTGGTTATG | + |
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Preference number: 6 (lower is better) Translates to: VTTQENWYLRDS*IVSGEGVGVVM Trigger: CATAACCACTCCTACCCCTTCGCCACTTACAATCCAGCTGTCCCTCAAATACCAATTCTCCTGGGTCGTTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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| CDS CAA 72 bp | GGACAGGGTAGGAGAAACTGTAACGACCCAGGAGAATaGGTATTTGAGGGACAGCTGGATTGTAAGTGGCGA | + |
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Preference number: 6 (lower is better) Translates to: GQGRRNCNDPGE*VFEGQLDCKWR Trigger: TCGCCACTTACAATCCAGCTGTCCCTCAAATACCAATTCTCCTGGGTCGTTACAGTTTCTCCTACCCTGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098837.3 |
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