Pregenerated sensors for FOXQ1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038415Ensembl transcript IDs: ENSMUST00000042118.11
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCGGGAGAGTACAGGCCTGGCCAAGAAATGGAAAAGAACGGCTTTaGTCCTCTGTAAAGTTACAAAAGACAAAGGAAACTATTCTGGAC | + |
|
Preference number: 1 (lower is better) Translates to: CGRVQAWPRNGKERL*SSVKLQKTKETILD Trigger: GTCCAGAATAGTTTCCTTTGTCTTTTGTAACTTTACAGAGGATCAAAGCCGTTCTTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR CCA 90 bp | GAAAGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATaGAAAAGAACGGCTTTGATCCTCTGTAAAGTTACAAAAGACAAA | + |
|
Preference number: 1 (lower is better) Translates to: ERKASMRESTGLAKK*KRTALILCKVTKDK Trigger: TTTGTCTTTTGTAACTTTACAGAGGATCAAAGCCGTTCTTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR-3UTR GCA 90 bp | GGCACAGTGAAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTTGATTGACCCCCCAACTCCACCCTaGTCAGCACCCCTTCTGCTG | + |
|
Preference number: 2 (lower is better) Translates to: GTVKHWLLAKKMTISLIDPPTPP*SAPLLL Trigger: CAGCAGAAGGGGTGCTGAGCAGGGTGGAGTTGGGGG...GTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTTCACTGTGCC 49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR-3UTR GCA 90 bp | TTAGCAAAGAAAATGACCATAAGTTTGATTGACAGCTCTCTTACACGCAGCAGTCCGGAAAGTGGAAAGTaGACAGCCCTAGAGCCCACA | + |
|
Preference number: 2 (lower is better) Translates to: LAKKMTISLIDSSLTRSSPESGK*TALEPT Trigger: TGTGGGCTCTAGGGCTGTGCACTTTCCACTTTCCGG...ACTGCTGCGTGTAAGAGAGCTGTCAATCAAACTTATGGTCATTTTCTTTGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR CAA 90 bp | GGCACAGTGAAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTaGATTGACAGCTCTCTTACACGCAGCAGTCACTCCTGTGAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: GTVKHWLLAKKMTIS*IDSSLTRSSHSCER Trigger: TCTTTCACAGGAGTGACTGCTGCGTGTAAGAGAGCTGTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTTCACTGTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR-3UTR TCA 90 bp | GGCACAGTGAAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTTGATTGACCAGCAGTCACTCCTGTaGAAGACACACATTTACACA | + |
|
Preference number: 2 (lower is better) Translates to: GTVKHWLLAKKMTISLIDQQSLL*KTHIYT Trigger: TGTGTAAATGTGTGTCTTTCACAGGAGTGACTGCTG...GTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTTCACTGTGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR-3UTR CCA 90 bp | AAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTTGATTGACAGCTCTCTTTATTCCTCCGGAAAGTaGAAAGTGCACAGCCCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: KHWLLAKKMTISLIDSSLYSSGK*KVHSPR Trigger: TCTAGGGCTGTGCACTTTCCACTTTCCGGAGGAATA...AAGAGAGCTGTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR-3UTR TCA 90 bp | TGGCACCCCACAAACATAATGCTAACTTTTCCTTTAAAGAAATTGCTTGGCCCACATGGAGTGGTTCCCTaGTGTATTTTTCTTTTTCTT | + |
|
Preference number: 2 (lower is better) Translates to: WHPTNIMLTFPLKKLLGPHGVVP*CIFLFL Trigger: AAGAAAAAGAAAAATACATCAGGGAACCACTCCATG...TGGGCCAAGCAATTTCTTTAAAGGAAAAGTTAGCATTATGTTTGTGGGGTGCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR-3UTR CCA 90 bp | AAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTTGATTGACAGCTCTCTTTCATCATTTACCCCATaGAGTGGTTCCCTGATGTAT | + |
|
Preference number: 2 (lower is better) Translates to: KHWLLAKKMTISLIDSSLSSFTP*SGSLMY Trigger: ATACATCAGGGAACCACTCCATGGGGTAAATGATGA...AAGAGAGCTGTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR GCA 72 bp | GGCGTGACGCAAATAGGAGGGAAAGGAAAGCCTCTATaGGGGAGAGTACAGGCCTGGCCAAGAAATGGAAAA | + |
|
Preference number: 3 (lower is better) Translates to: GVTQIGGKGKPL*GRVQAWPRNGK Trigger: TTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCTTTCCCTCCTATTTGCGTCACGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR GCA 72 bp | AAAAAGAAAAACTCTATTCCTCCGGAAAGTGGAAAGTaGACAGCCCTAGAGCCCACATTCCAACCTCCTCAA | + |
|
Preference number: 3 (lower is better) Translates to: KKKNSIPPESGK*TALEPTFQPPQ Trigger: TTGAGGAGGTTGGAATGTGGGCTCTAGGGCTGTGCACTTTCCACTTTCCGGAGGAATAGAGTTTTTCTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR TCA 72 bp | GTACAGGCCTGGCCAAGAAATGGAAAAGAACGGCTTTaGTCCTCTGTAAAGTTACAAAAGACAAAGGAAACT | + |
|
Preference number: 3 (lower is better) Translates to: VQAWPRNGKERL*SSVKLQKTKET Trigger: AGTTTCCTTTGTCTTTTGTAACTTTACAGAGGATCAAAGCCGTTCTTTTCCATTTCTTGGCCAGGCCTGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR-3UTR CAA 90 bp | TGGCACCCCACAAACATAATGCTAACTTTTCCTTTAAAGAAATTGCTTGGCCCATGGCACAGTGAAGCATaGGTTGTTAGCAAAGAAAAT | + |
|
Preference number: 3 (lower is better) Translates to: WHPTNIMLTFPLKKLLGPWHSEA*VVSKEN Trigger: ATTTTCTTTGCTAACAACCAATGCTTCACTGTGCCA...TGGGCCAAGCAATTTCTTTAAAGGAAAAGTTAGCATTATGTTTGTGGGGTGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | TCCGGAAAGTGGAAAGTGCACAGCCCTAGAGCCCACATTCCAACCTCCTCAACAGAGACTGTGGTCCGGTaGCTGAGGCGCTTGCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: SGKWKVHSPRAHIPTSSTETVVR*LRRLRR Trigger: CCGCCGCAAGCGCCTCAGCCACCGGACCACAGTCTC...TGTTGAGGAGGTTGGAATGTGGGCTCTAGGGCTGTGCACTTTCCACTTTCCGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR GCA 90 bp | AGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATGGAAAAGAACGGAGATGGCACGTCGCTaGTGCCGGCCCCCTCCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: RKASMRESTGLAKKWKRTEMARR*CRPPPD Trigger: ATCTGGAGGGGGCCGGCAGCAGCGACGTGCCATCTC...CGTTCTTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | ACACGGTTTCTCGTGGTGGCGGCCCTGGCACCCCACAAACATAATGCTAACTTTGACCTCGGAATGGCTTaGCTGGAGCCGCGGTGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TRFLVVAALAPHKHNANFDLGMA*LEPRWR Trigger: TCTCCACCGCGGCTCCAGCCAAGCCATTCCGAGGTC...AAAGTTAGCATTATGTTTGTGGGGTGCCAGGGCCGCCACCACGAGAAACCGTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR GCA 90 bp | AGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATGGAAAAGAACGTTTGTCCCCGTGGGCTaGGCGTGGGACGAACACCTC | + |
|
Preference number: 4 (lower is better) Translates to: RKASMRESTGLAKKWKRTFVPVG*AWDEHL Trigger: GAGGTGTTCGTCCCACGCGCAGCCCACGGGGACAAA...CGTTCTTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR GCA 90 bp | TCCGGAAAGTGGAAAGTGCACAGCCCTAGAGCCCACATTCCAACCTCCTCAACACCTGCCGCGGAGGCCTaGGTTCTGCTGTCATCAGTT | + |
|
Preference number: 4 (lower is better) Translates to: SGKWKVHSPRAHIPTSSTPAAEA*VLLSSV Trigger: AACTGATGACAGCAGAACGCAGGCCTCCGCGGCAGG...TGTTGAGGAGGTTGGAATGTGGGCTCTAGGGCTGTGCACTTTCCACTTTCCGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR GCA 90 bp | AGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATGGAAAAGAACGTCCAGTAGTTGTCCTTaGCCCAGGGCCGCGAGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: RKASMRESTGLAKKWKRTSSSCP*PRAARG Trigger: ACCCCTCGCGGCCCTGGGGCAAGGACAACTACTGGA...CGTTCTTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | ACACGGTTTCTCGTGGTGGCGGCCCTGGCACCCCACAAACATAATGCTAACTTTCGATGGCGAAGGAGCTaGAGAACTTGCTCGCAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: TRFLVVAALAPHKHNANFRWRRS*RTCSQG Trigger: GCCCTGCGAGCAAGTTCTCCAGCTCCTTCGCCATCG...AAAGTTAGCATTATGTTTGTGGGGTGCCAGGGCCGCCACCACGAGAAACCGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR GCA 90 bp | ATAGGAGGGAAAGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATAGGAGCTGGAGAACTTaGTCGCAGGGCTGGAGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: IGGKGKPLCGRVQAWPRNRSWRT*SQGWSA Trigger: AGCGCTCCAGCCCTGCGAGCAAGTTCTCCAGCTCCT...ATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCTTTCCCTCCTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | ATAGGAGGGAAAGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATCCCGTGGGCTGCGCGTaGGACGAACACCTCCAATTT | + |
|
Preference number: 4 (lower is better) Translates to: IGGKGKPLCGRVQAWPRNPVGCA*DEHLQF Trigger: AAATTGGAGGTGTTCGTCCCACGCGCAGCCCACGGG...ATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCTTTCCCTCCTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | AAAGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATGGAAAAGAAAGGAGTATGGGGGCTTaGGCCGCCGCGTGTACGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KGKPLCGRVQAWPRNGKERSMGA*AAACTA Trigger: AGCCGTACACGCGGCGGCCCAAGCCCCCATACTCCT...TTCTTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | AAAGGAAAGCCTCTATGCGGGAGAGTACAGGCCTGGCCAAGAAATGGAAAAGAATCGGAATGGCTTGGCTaGAGCCGCGGTGGAGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: KGKPLCGRVQAWPRNGKESEWLG*SRGGEG Trigger: CCCCTCTCCACCGCGGCTCCAGCCAAGCCATTCCGA...TTCTTTTCCATTTCTTGGCCAGGCCTGTACTCTCCCGCATAGAGGCTTTCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR TCA 90 bp | GGCACAGTGAAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTTGATTGACCTGTGGTCCGGTGGCTaGGGCGCTTGCGGCGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: GTVKHWLLAKKMTISLIDLWSGG*GACGGG Trigger: GCCGCCGCCGCAAGCGCCTCAGCCACCGGACCACAG...GTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTTCACTGTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR TCA 90 bp | ACACGGTTTCTCGTGGTGGCGGCCCTGGCACCCCACAAACATAATGCTAACTTTTGCGAAAAGGCTTGCTaGGAATGCTGTCGATGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: TRFLVVAALAPHKHNANFCEKAC*ECCRWR Trigger: TCGCCATCGACAGCATTCTCAGCAAGCCTTTTCGCA...AAAGTTAGCATTATGTTTGTGGGGTGCCAGGGCCGCCACCACGAGAAACCGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | TGGCACCCCACAAACATAATGCTAACTTTTCCTTTAAAGAAATTGCTTGGCCCACCGCCGCCGGGCTGTTaGCTGCACAGTCCCCGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: WHPTNIMLTFPLKKLLGPPPPGC*LHSPRL Trigger: CAGACGGGGACTGTGCAGCCAACAGCCCGGCGGCGG...TGGGCCAAGCAATTTCTTTAAAGGAAAAGTTAGCATTATGTTTGTGGGGTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR TCA 90 bp | TCCGGAAAGTGGAAAGTGCACAGCCCTAGAGCCCACATTCCAACCTCCTCAACAATTCGCTGTTGGGGTTaGGCATCCAGTAGTTGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: SGKWKVHSPRAHIPTSSTIRCWG*ASSSCP Trigger: AGGACAACTACTGGATGCTCAACCCCAACAGCGAAT...TGTTGAGGAGGTTGGAATGTGGGCTCTAGGGCTGTGCACTTTCCACTTTCCGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | ATTGACAGCTCTCTTACACGCAGCAGTCACTCCTGTGAAAGACACACATTTACAAGCGATGTAGGAGTATaGGGGCTTGGGCCGCCGCGT | + |
|
Preference number: 4 (lower is better) Translates to: IDSSLTRSSHSCERHTFTSDVGV*GLGPPR Trigger: ACGCGGCGGCCCAAGCCCCCATACTCCTACATCGCT...TGTAAATGTGTGTCTTTCACAGGAGTGACTGCTGCGTGTAAGAGAGCTGTCAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CCA 90 bp | TTAGCAAAGAAAATGACCATAAGTTTGATTGACAGCTCTCTTACACGCAGCAGTACTTGCTCGCAGGGCTaGAGCGCTCCTCCTGGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: LAKKMTISLIDSSLTRSSTCSQG*SAPPGE Trigger: CTCGCCAGGAGGAGCGCTCCAGCCCTGCGAGCAAGT...ACTGCTGCGTGTAAGAGAGCTGTCAATCAAACTTATGGTCATTTTCTTTGCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR GCA 90 bp | TTAGCAAAGAAAATGACCATAAGTTTGATTGACAGCTCTCTTACACGCAGCAGTGCCAGCCCGTGTAGCTaGCCCGGAAAAAGGGGAACT | + |
|
Preference number: 4 (lower is better) Translates to: LAKKMTISLIDSSLTRSSASPCS*PGKRGT Trigger: AGTTCCCCTTTTTCCGGGGCAGCTACACGGGCTGGC...ACTGCTGCGTGTAAGAGAGCTGTCAATCAAACTTATGGTCATTTTCTTTGCTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| 3UTR CAA 72 bp | AAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTaGATTGACAGCTCTCTTACACGCAGCAGTCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: KHWLLAKKMTIS*IDSSLTRSSHS Trigger: GGAGTGACTGCTGCGTGTAAGAGAGCTGTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS GCA 90 bp | CGATGTAGGAGTATGGGGGCTTGGGCCGCCGCGTGTACGGCTTGCTaGGCGCGCCCTCGCCGCCGCCCACGCCGCCCGCGCACGGCCCTG | + |
|
Preference number: 5 (lower is better) Translates to: RCRSMGAWAAACTAC*ARPRRRPRRPRTAL Trigger: CAGGGCCGTGCGCGGGCGGCGTGGGCGGCGGCGAGGGCGCGCGCAGCAAGCCGTACACGCGGCGGCCCAAGCCCCCATACTCCTACATCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CCA 90 bp | GGGGCTTCCTCCGGCCGCAGCCCGGACGCGGAGACTGTGGTCCGGTaGCTGAGGCGCTTGCGGCGGCGGCGGAAGACCCCGTCGGCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: GASSGRSPDAETVVR*LRRLRRRRKTPSAK Trigger: CTTCGCCGACGGGGTCTTCCGCCGCCGCCGCAAGCGCCTCAGCCACCGGACCACAGTCTCCGCGTCCGGGCTGCGGCCGGAGGAAGCCCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS TCA 90 bp | CTTCCTCCGGCCGCAGCCCGGACGCGGAGACTGTGGTCCGGTGGCTaGGGCGCTTGCGGCGGCGGCGGAAGACCCCGTCGGCGAAGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: LPPAAARTRRLWSGG*GACGGGGRPRRRRC Trigger: ACACCTTCGCCGACGGGGTCTTCCGCCGCCGCCGCAAGCGCCTCAGCCACCGGACCACAGTCTCCGCGTCCGGGCTGCGGCCGGAGGAAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS GCA 90 bp | GCTGCCGCCTGCAGGGCCGTGGGCAGCCGTAGGGGGCAGTACAGGTaGGCCGCGCCGGCGGTCTCCGGACCTCGGAATGGCTTGGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: AAACRAVGSRRGQYR*AAPAVSGPRNGLAG Trigger: TCCAGCCAAGCCATTCCGAGGTCCGGAGACCGCCGGCGCGGCGCACCTGTACTGCCCCCTACGGCTGCCCACGGCCCTGCAGGCGGCAGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CCA 90 bp | CGCCACCTTCCAGATCCCCGGCGCCGCTGCCCGCCGCCGGGCTGTTaGCTGCACAGTCCCCGTCTGAGCCTAAGGAGTCGTCACCAGCCG | + |
|
Preference number: 5 (lower is better) Translates to: RHLPDPRRRCPPPGC*LHSPRLSLRSRHQP Trigger: CGGCTGGTGACGACTCCTTAGGCTCAGACGGGGACTGTGCAGCCAACAGCCCGGCGGCGGGCAGCGGCGCCGGGGATCTGGAAGGTGGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CAA 90 bp | ATTGACAGCTCTCTTACACGCAGCAGTCACTCCTGTGAAAGACACACATTTACACGGCTGCGAAAAGGCTaGCTGAGAATGCTGTCGATG | + |
|
Preference number: 5 (lower is better) Translates to: IDSSLTRSSHSCERHTFTRLRKG*LRMLSM Trigger: CATCGACAGCATTCTCAGCAAGCCTTTTCGCAGCCG...TGTAAATGTGTGTCTTTCACAGGAGTGACTGCTGCGTGTAAGAGAGCTGTCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CAA 90 bp | ATTGACAGCTCTCTTACACGCAGCAGTCACTCCTGTGAAAGACACACATTTACACGGAAAAAGGGGAACTaGCCCATGAGGTACTCGTTG | + |
|
Preference number: 5 (lower is better) Translates to: IDSSLTRSSHSCERHTFTRKKGN*PMRYSL Trigger: CAACGAGTACCTCATGGGCAAGTTCCCCTTTTTCCG...TGTAAATGTGTGTCTTTCACAGGAGTGACTGCTGCGTGTAAGAGAGCTGTCAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS-3UTR CAA 90 bp | GGCACAGTGAAGCATTGGTTGTTAGCAAAGAAAATGACCATAAGTTTGATTGACCCCATGAGGTACTCGTaGATCTCGGCCAGTGTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: GTVKHWLLAKKMTISLIDPMRYS*ISASVR Trigger: CCTGACACTGGCCGAGATCAACGAGTACCTCATGGG...GTCAATCAAACTTATGGTCATTTTCTTTGCTAACAACCAATGCTTCACTGTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CCA 72 bp | GACCGGGACCGCAGGCCGCTGCCGCCTGCAGGGCCGTaGGCAGCCGTAGGGGGCAGTACAGGTGCGCCGCGC | + |
|
Preference number: 6 (lower is better) Translates to: DRDRRPLPPAGP*AAVGGSTGAPR Trigger: GCGCGGCGCACCTGTACTGCCCCCTACGGCTGCCCACGGCCCTGCAGGCGGCAGCGGCCTGCGGTCCCGGTC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS GCA 72 bp | GTGGAGAGGGGCGCCAGCAGAAGGGGCGCCGCGGGCTaGACCTCGGTCCCGCGCGACGCCAGCAGCGTAGGC | + |
|
Preference number: 6 (lower is better) Translates to: VERGASRRGAAG*TSVPRDASSVG Trigger: GCCTACGCTGCTGGCGTCGCGCGGGACCGAGGTGCAGCCCGCGGCGCCCCTTCTGCTGGCGCCCCTCTCCAC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS GCA 72 bp | TGCAGGGCCGTGGGCAGCCGTAGGGGGCAGTACAGGTaGGCCGCGCCGGCGGTCTCCGGACCTCGGAATGGC | + |
|
Preference number: 6 (lower is better) Translates to: CRAVGSRRGQYR*AAPAVSGPRNG Trigger: GCCATTCCGAGGTCCGGAGACCGCCGGCGCGGCGCACCTGTACTGCCCCCTACGGCTGCCCACGGCCCTGCA 75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CCA 72 bp | GCGCCGCGCCGGCGGTCTCCGGACCTCGGAATGGCTTaGCTGGAGCCGCGGTGGAGAGGGGCGCCAGCAGAA | + |
|
Preference number: 6 (lower is better) Translates to: APRRRSPDLGMA*LEPRWRGAPAE Trigger: TTCTGCTGGCGCCCCTCTCCACCGCGGCTCCAGCCAAGCCATTCCGAGGTCCGGAGACCGCCGGCGCGGCGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CAA 72 bp | TGCGCCGCGCCGGCGGTCTCCGGACCTCGGAATGGCTaGGCTGGAGCCGCGGTGGAGAGGGGCGCCAGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: CAAPAVSGPRNG*AGAAVERGASR Trigger: TCTGCTGGCGCCCCTCTCCACCGCGGCTCCAGCCAAGCCATTCCGAGGTCCGGAGACCGCCGGCGCGGCGCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS GCA 72 bp | CCCACGCCGCCCGCGCACGGCCCTGCCGCGGAGGCCTaGGTTCTGCTGTCATCAGTTGCCTCCGGACCGTCT | + |
|
Preference number: 6 (lower is better) Translates to: PTPPAHGPAAEA*VLLSSVASGPS Trigger: AGACGGTCCGGAGGCAACTGATGACAGCAGAACGCAGGCCTCCGCGGCAGGGCCGTGCGCGGGCGGCGTGGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CCA 72 bp | CTGGAGAACTTGCTCGCAGGGCTGGAGCGCTCCTCCTaGCGAGCCGGCGAGCGCGCGATCGGGGAGGAGCGG | + |
|
Preference number: 6 (lower is better) Translates to: LENLLAGLERSS*RAGERAIGEER Trigger: CCGCTCCTCCCCGATCGCGCGCTCGCCGGCTCGCCAGGAGGAGCGCTCCAGCCCTGCGAGCAAGTTCTCCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CAA 90 bp | CCGCCACCTTCCAGATCCCCGGCGCCGCTGCCCGCCGCCGGGCTGTaGGCTGCACAGTCCCCGTCTGAGCCTAAGGAGTCGTCACCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: PPPSRSPAPLPAAGL*AAQSPSEPKESSPA Trigger: GGCTGGTGACGACTCCTTAGGCTCAGACGGGGACTGTGCAGCCAACAGCCCGGCGGCGGGCAGCGGCGCCGGGGATCTGGAAGGTGGCGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CAA 72 bp | TCCAGATCCCCGGCGCCGCTGCCCGCCGCCGGGCTGTaGGCTGCACAGTCCCCGTCTGAGCCTAAGGAGTCG | + |
|
Preference number: 6 (lower is better) Translates to: SRSPAPLPAAGL*AAQSPSEPKES Trigger: CGACTCCTTAGGCTCAGACGGGGACTGTGCAGCCAACAGCCCGGCGGCGGGCAGCGGCGCCGGGGATCTGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CCA 72 bp | CGATGGCGAAGGAGCTGGAGAACTTGCTCGCAGGGCTaGAGCGCTCCTCCTGGCGAGCCGGCGAGCGCGCGA | + |
|
Preference number: 6 (lower is better) Translates to: RWRRSWRTCSQG*SAPPGEPASAR Trigger: TCGCGCGCTCGCCGGCTCGCCAGGAGGAGCGCTCCAGCCCTGCGAGCAAGTTCTCCAGCTCCTTCGCCATCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CAA 72 bp | TCGCTGCTGCCGGCCCCCTCCAGATCGCTGCCCATTTaGTCCCCGTGGGCTGCGCGTGGGACGAACACCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SLLPAPSRSLPI*SPWAARGTNTS Trigger: GGAGGTGTTCGTCCCACGCGCAGCCCACGGGGACAAAATGGGCAGCGATCTGGAGGGGGCCGGCAGCAGCGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||
| CDS CAA 72 bp | AGAGCCGAGTCGCCGTCGCGGCGGCTGCGAAAAGGCTaGCTGAGAATGCTGTCGATGGCGAAGGAGCTGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RAESPSRRLRKG*LRMLSMAKELE Trigger: CTCCAGCTCCTTCGCCATCGACAGCATTCTCAGCAAGCCTTTTCGCAGCCGCCGCGACGGCGACTCGGCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042118.11 |
||