Pregenerated sensors for FOXL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050397Ensembl transcript IDs: ENSMUST00000051312.5
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGCAGACCGCTCGAGGGCTCTGCATCCAGAAGCTGTCCCGGAGTaGGCGCTGTCAGGCTGGCTGCTGCGGCTGCGACCCGAGCTCGGC | + |
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Preference number: 1 (lower is better) Translates to: RADRSRALHPEAVPE*ALSGWLLRLRPELG Trigger: GCCGAGCTCGGGTCGCAGCCGCAGCAGCCAGCCTGACAGCGCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCTCGAGCGGTCTGCCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 90 bp | GCAGGAGCGGGGCGGACCGAGGAAGGGCAGACCGCTCGAGGGCTCTaGATCCAGAAGCTGTCCCGGAGTGCGCGCTGTCAGGCTGGCTGC | + |
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Preference number: 1 (lower is better) Translates to: AGAGRTEEGQTARGL*IQKLSRSARCQAGC Trigger: GCAGCCAGCCTGACAGCGCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCTCGAGCGGTCTGCCCTTCCTCGGTCCGCCCCGCTCCTGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CCA 90 bp | AGGGCTCTGCATCCAGAAGCTGTCCCGGAGTGCGCGCTGTCAGGCTaGCTGCTGCGGCTGCGACCCGAGCTCGGCTCCTCCACTCCCGGG | + |
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Preference number: 1 (lower is better) Translates to: RALHPEAVPECALSG*LLRLRPELGSSTPG Trigger: CCCGGGAGTGGAGGAGCCGAGCTCGGGTCGCAGCCGCAGCAGCCAGCCTGACAGCGCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CCA 90 bp | AGGTCACGGGATTTCGGGCCAGCCGGCTGGGGCCACAAGCCCGTGTaGGCCGGCCATGACGAGTTTCACATTTCTCCTTCCGAAGGTGGA | + |
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Preference number: 1 (lower is better) Translates to: RSRDFGPAGWGHKPV*AGHDEFHISPSEGG Trigger: TCCACCTTCGGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCAGCCGGCTGGCCCGAAATCCCGTGACCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 90 bp | ACCAATCTTTTTCATAAAGACCTGGCCTGGAGGTGCCCTATGCGGTaGTCTGCGGAGCGGAGGCACCACGGCCTCACAAGGAGCGGGGGA | + |
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Preference number: 1 (lower is better) Translates to: TNLFHKDLAWRCPMR*SAERRHHGLTRSGG Trigger: TCCCCCGCTCCTTGTGAGGCCGTGGTGCCTCCGCTCCGCAGAGCACCGCATAGGGCACCTCCAGGCCAGGTCTTTATGAAAAAGATTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR TCA 90 bp | TTTCGGGCCAGCCGGCTGGGGCCACAAGCCCGTGTGGGCCGGCCATaGCGAGTTTCACATTTCTCCTTCCGAAGGTGGAAGAAACAAGAC | + |
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Preference number: 1 (lower is better) Translates to: FRASRLGPQARVGRP*RVSHFSFRRWKKQD Trigger: GTCTTGTTTCTTCCACCTTCGGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCAGCCGGCTGGCCCGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 90 bp | TTCAAAAGCCTCACCAATCTTTTTCATAAAGACCTGGCCTGGAGGTaGCCTATGCGGTGCTCTGCGGAGCGGAGGCACCACGGCCTCACA | + |
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Preference number: 1 (lower is better) Translates to: FKSLTNLFHKDLAWR*PMRCSAERRHHGLT Trigger: TGTGAGGCCGTGGTGCCTCCGCTCCGCAGAGCACCGCATAGGGCACCTCCAGGCCAGGTCTTTATGAAAAAGATTGGTGAGGCTTTTGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR TCA 90 bp | TTGCCTACAGTAGCCTCTAGCGAGGGCCGGGTATCTTTGCCGGTGTaGAACAGCCGCAACAGACAAACGATGACACAGAAAAACAAACAA | + |
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Preference number: 1 (lower is better) Translates to: LPTVASSEGRVSLPV*NSRNRQTMTQKNKQ Trigger: TTGTTTGTTTTTCTGTGTCATCGTTTGTCTGTTGCGGCTGTTTCACACCGGCAAAGATACCCGGCCCTCGCTAGAGGCTACTGTAGGCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR-3UTR GCA 90 bp | CACGGAGTGGGCGGCCTCCGGCCAGCAGCACGGGAAAGCAGAGGCCGCGGCGGGTGTCAGGCTGGCTGCTaGGGCTGCGACCCGAGCTCG | + |
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Preference number: 2 (lower is better) Translates to: HGVGGLRPAARESRGRGGCQAGC*GCDPSS Trigger: CGAGCTCGGGTCGCAGCCGCAGCAGCCAGCCTGACA...CCCGCCGCGGCCTCTGCTTTCCCGTGCTGCTGGCCGGAGGCCGCCCACTCCGTG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CAA 90 bp | GCGGAGGCACCACGGCCTCACAAGGAGCGGGGGATGAGAACTCGGTaGCAGGCCGCGGAACGAGGCTGTCCCTGCTCCAGCCTGGGGCTC | + |
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Preference number: 2 (lower is better) Translates to: AEAPRPHKERGMRTR*QAAERGCPCSSLGL Trigger: GAGCCCCAGGCTGGAGCAGGGACAGCCTCGTTCCGCGGCCTGCAACCGAGTTCTCATCCCCCGCTCCTTGTGAGGCCGTGGTGCCTCCGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR-3UTR TCA 90 bp | AGTGTGGGTCCCTCTTCCCCCAGCAGCCTAGCGCTTCTAGTCGCAGACAGTCGGACTCACTCCCTGCGGTaGGGAGAGGAGGCCCGCGGA | + |
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Preference number: 2 (lower is better) Translates to: SVGPSSPSSLALLVADSRTHSLR*GEEARG Trigger: TCCGCGGGCCTCCTCTCCTCACCGCAGGGAGTGAGT...CCGACTGTCTGCGACTAGAAGCGCTAGGCTGCTGGGGGAAGAGGGACCCACACT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR-3UTR GCA 90 bp | GGCTGGGGCCACAAGCCCGTGTGGGCCGGCCATGACGAGTTTCACATTTCTCCTCGGGGACTCACTCCCTaGGGTGAGGAGAGGAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: GWGHKPVWAGHDEFHISPRGLTP*GEERRP Trigger: GGGCCTCCTCTCCTCACCGCAGGGAGTGAGTCCCCG...AGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCAGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR-3UTR GCA 90 bp | CTCTGCAAGCGGCTTCTGATCAGTTCCAGGAGGGATCGCAGAGCGACCAGACACGGCCAAGAGGTAAGCTaGGTCTCAGACACTTCGACC | + |
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Preference number: 2 (lower is better) Translates to: LCKRLLISSRRDRRATRHGQEVS*VSDTST Trigger: GGTCGAAGTGTCTGAGACGCAGCTTACCTCTTGGCC...GTGTCTGGTCGCTCTGCGATCCCTCCTGGAACTGATCAGAAGCCGCTTGCAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR TCA 72 bp | TCGACCGCACCTCGGCCGGGGACTCACTCCCTGCGGTaGGGAGAGGAGGCCCGCGGAAAGCACGGAGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: STAPRPGTHSLR*GEEARGKHGVG Trigger: GCCCACTCCGTGCTTTCCGCGGGCCTCCTCTCCTCACCGCAGGGAGTGAGTCCCCGGCCGAGGTGCGGTCGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 72 bp | CGCTCGAGGGCTCTGCATCCAGAAGCTGTCCCGGAGTaGGCGCTGTCAGGCTGGCTGCTGCGGCTGCGACCC | + |
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Preference number: 3 (lower is better) Translates to: RSRALHPEAVPE*ALSGWLLRLRP Trigger: GGGTCGCAGCCGCAGCAGCCAGCCTGACAGCGCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCTCGAGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CCA 72 bp | CATCCAGAAGCTGTCCCGGAGTGCGCGCTGTCAGGCTaGCTGCTGCGGCTGCGACCCGAGCTCGGCTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: HPEAVPECALSG*LLRLRPELGSS Trigger: GGAGGAGCCGAGCTCGGGTCGCAGCCGCAGCAGCCAGCCTGACAGCGCGCACTCCGGGACAGCTTCTGGATG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 72 bp | GGGCGGACCGAGGAAGGGCAGACCGCTCGAGGGCTCTaGATCCAGAAGCTGTCCCGGAGTGCGCGCTGTCAG | + |
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Preference number: 3 (lower is better) Translates to: GRTEEGQTARGL*IQKLSRSARCQ Trigger: CTGACAGCGCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCTCGAGCGGTCTGCCCTTCCTCGGTCCGCCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR TCA 72 bp | CCGCCCCGCCCAGTGGGCCCCTCTGCAAGCGGCTTCTaGTCAGTTCCAGGAGGGATCGCAGAGCGACCAGAC | + |
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Preference number: 3 (lower is better) Translates to: PPRPVGPSASGF*SVPGGIAERPD Trigger: GTCTGGTCGCTCTGCGATCCCTCCTGGAACTGATCAGAAGCCGCTTGCAGAGGGGCCCACTGGGCGGGGCGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CCA 72 bp | GATTTCGGGCCAGCCGGCTGGGGCCACAAGCCCGTGTaGGCCGGCCATGACGAGTTTCACATTTCTCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: DFGPAGWGHKPV*AGHDEFHISPS Trigger: GGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCAGCCGGCTGGCCCGAAATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR TCA 72 bp | AGCCGGCTGGGGCCACAAGCCCGTGTGGGCCGGCCATaGCGAGTTTCACATTTCTCCTTCCGAAGGTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: SRLGPQARVGRP*RVSHFSFRRWK Trigger: CTTCCACCTTCGGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCAGCCGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 72 bp | TTTCATAAAGACCTGGCCTGGAGGTGCCCTATGCGGTaGTCTGCGGAGCGGAGGCACCACGGCCTCACAAGG | + |
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Preference number: 3 (lower is better) Translates to: FHKDLAWRCPMR*SAERRHHGLTR Trigger: CCTTGTGAGGCCGTGGTGCCTCCGCTCCGCAGAGCACCGCATAGGGCACCTCCAGGCCAGGTCTTTATGAAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 72 bp | ATCTTTTTCATAAAGACCTGGCCTGGAGGTGCCCTATaGGGTGCTCTGCGGAGCGGAGGCACCACGGCCTCA | + |
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Preference number: 3 (lower is better) Translates to: IFFIKTWPGGAL*GALRSGGTTAS Trigger: TGAGGCCGTGGTGCCTCCGCTCCGCAGAGCACCGCATAGGGCACCTCCAGGCCAGGTCTTTATGAAAAAGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CCA 72 bp | CTGGGCGGTGTGTACCAGCCAGGCAGAGATCTCTTCTaGCATCCGGGGCAGAATCGGAAGATCCGGGGAAAT | + |
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Preference number: 3 (lower is better) Translates to: LGGVYQPGRDLF*HPGQNRKIRGN Trigger: ATTTCCCCGGATCTTCCGATTCTGCCCCGGATGCCAGAAGAGATCTCTGCCTGGCTGGTACACACCGCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 72 bp | CTCACCAATCTTTTTCATAAAGACCTGGCCTGGAGGTaGCCTATGCGGTGCTCTGCGGAGCGGAGGCACCAC | + |
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Preference number: 3 (lower is better) Translates to: LTNLFHKDLAWR*PMRCSAERRHH Trigger: GTGGTGCCTCCGCTCCGCAGAGCACCGCATAGGGCACCTCCAGGCCAGGTCTTTATGAAAAAGATTGGTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CCA 72 bp | AAAAGCCTCACCAATCTTTTTCATAAAGACCTGGCCTaGAGGTGCCCTATGCGGTGCTCTGCGGAGCGGAGG | + |
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Preference number: 3 (lower is better) Translates to: KSLTNLFHKDLA*RCPMRCSAERR Trigger: CCTCCGCTCCGCAGAGCACCGCATAGGGCACCTCCAGGCCAGGTCTTTATGAAAAAGATTGGTGAGGCTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR TCA 72 bp | GTAGCCTCTAGCGAGGGCCGGGTATCTTTGCCGGTGTaGAACAGCCGCAACAGACAAACGATGACACAGAAA | + |
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Preference number: 3 (lower is better) Translates to: VASSEGRVSLPV*NSRNRQTMTQK Trigger: TTTCTGTGTCATCGTTTGTCTGTTGCGGCTGTTTCACACCGGCAAAGATACCCGGCCCTCGCTAGAGGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR GCA 72 bp | CTGAAAAACAAAGCAGCAGCGACAGCCCAAAGCGCCTaGCACCCGGGTTGTCCTCAACTCTTGTTTGTGTCA | + |
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Preference number: 3 (lower is better) Translates to: LKNKAAATAQSA*HPGCPQLLFVS Trigger: TGACACAAACAAGAGTTGAGGACAACCCGGGTGGCAGGCGCTTTGGGCTGTCGCTGCTGCTTTGTTTTTCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| 3UTR CCA 72 bp | GAATTAAAAATAAAATCGAGCTTGAGTCCACCGACCTaGAAGAGAGGGCCAAGAGGTAAGCTGCGTCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: ELKIKSSLSPPT*KRGPRGKLRLR Trigger: TCTGAGACGCAGCTTACCTCTTGGCCCTCTCTTCCAGGTCGGTGGACTCAAGCTCGATTTTATTTTTAATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | AAAGCGGAGTCGCAGGAGCGGGGCGGACCGAGGAAGGGCAGACCGCTCGAGGGCGGAAGGGCCGCTTCATaGGGCGGCGGCGCCGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: KAESQERGGPRKGRPLEGGRAAS*GGGAGS Trigger: ACTACCGGCGCCGCCGCCGCATGAAGCGGCCCTTCC...GCCCTCGAGCGGTCTGCCCTTCCTCGGTCCGCCCCGCTCCTGCGACTCCGCTTT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR CCA 90 bp | AAAGCGGAGTCGCAGGAGCGGGGCGGACCGAGGAAGGGCAGACCGCTCGAGGGCTTGCAGGTACTTGGGTaGCGCCAGGTAGCCATAGCC | + |
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Preference number: 4 (lower is better) Translates to: KAESQERGGPRKGRPLEGLQVLG*RQVAIA Trigger: GGCTATGGCTACCTGGCGCCACCCAAGTACCTGCAA...GCCCTCGAGCGGTCTGCCCTTCCTCGGTCCGCCCCGCTCCTGCGACTCCGCTTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR CCA 90 bp | AAAGCGGAGTCGCAGGAGCGGGGCGGACCGAGGAAGGGCAGACCGCTCGAGGGCATGAGCAATGCATCATaGCGAGCTCGGGTTGCCGGG | + |
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Preference number: 4 (lower is better) Translates to: KAESQERGGPRKGRPLEGMSNAS*RARVAG Trigger: CCCGGCAACCCGAGCTCGCCATGATGCATTGCTCAT...GCCCTCGAGCGGTCTGCCCTTCCTCGGTCCGCCCCGCTCCTGCGACTCCGCTTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR TCA 90 bp | AGGGCAGACCGCTCGAGGGCTCTGCATCCAGAAGCTGTCCCGGAGTGCGCGCTGAGATGCCGGACAGAGTaGGCCTCTTCTCGGCGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RADRSRALHPEAVPECALRCRTE*ASSRRS Trigger: AGAGCGCCGAGAAGAGGCTCACTCTGTCCGGCATCT...CAGCGCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCTCGAGCGGTCTGCCCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | TGGGGCCACAAGCCCGTGTGGGCCGGCCATGACGAGTTTCACATTTCTCCTTCCGGCAGCGCCATGCTCTaGACGCGCGAGTACGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: WGHKPVWAGHDEFHISPSGSAML*TREYGP Trigger: CGGGCCGTACTCGCGCGTGCAGAGCATGGCGCTGCC...GGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | TGGGGCCACAAGCCCGTGTGGGCCGGCCATGACGAGTTTCACATTTCTCCTTCCCCGGAGGCAGCGCCATaGTCTGCACGCGCGAGTACG | + |
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Preference number: 4 (lower is better) Translates to: WGHKPVWAGHDEFHISPSPEAAP*SARAST Trigger: CGTACTCGCGCGTGCAGAGCATGGCGCTGCCTCCGG...GGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | TGGGGCCACAAGCCCGTGTGGGCCGGCCATGACGAGTTTCACATTTCTCCTTCCATGGCGAGCTCGGGTTaGCGGGCGCAGGCGAACTGC | + |
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Preference number: 4 (lower is better) Translates to: WGHKPVWAGHDEFHISPSMASSG*RAQANC Trigger: GCAGTTCGCCTGCGCCCGGCAACCCGAGCTCGCCAT...GGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | GCCGGCTGGGGCCACAAGCCCGTGTGGGCCGGCCATGACGAGTTTCACATTTCTGCAGCGCGCCCGTCTTaGTGTCGTGGTCCCAGTATG | + |
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Preference number: 4 (lower is better) Translates to: AGWGHKPVWAGHDEFHISAARPS*CRGPSM Trigger: CATACTGGGACCACGACAGCAAGACGGGCGCGCTGC...AGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCAGCCGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR CCA 90 bp | AAAGCGGAGTCGCAGGAGCGGGGCGGACCGAGGAAGGGCAGACCGCTCGAGGGCTTGAGGCTGAGGTTGTaGCGGATGCTATTCTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: KAESQERGGPRKGRPLEGLRLRL*RMLFCQ Trigger: CTGGCAGAATAGCATCCGCCACAACCTCAGCCTCAA...GCCCTCGAGCGGTCTGCCCTTCCTCGGTCCGCCCCGCTCCTGCGACTCCGCTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR CCA 90 bp | AGGAAGGGCAGACCGCTCGAGGGCTCTGCATCCAGAAGCTGTCCCGGAGTGCGCCCGATTGCAGGTACTTaGGTGGCGCCAGGTAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: RKGRPLEGSASRSCPGVRPIAGT*VAPGSH Trigger: ATGGCTACCTGGCGCCACCCAAGTACCTGCAATCGG...GCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCTCGAGCGGTCTGCCCTTCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | AGGAGTGTCATCTGGGCGGTGTGTACCAGCCAGGCAGAGATCTCTTCTGGCATCCGAGCGTCCAGTAGTTaGCCTTGCGCTCGCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: RSVIWAVCTSQAEISSGIRASSS*PCARRR Trigger: GCGGCGGCGAGCGCAAGGGCAACTACTGGACGCTCG...GATGCCAGAAGAGATCTCTGCCTGGCTGGTACACACCGCCCAGATGACACTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | AGGAAGGGCAGACCGCTCGAGGGCTCTGCATCCAGAAGCTGTCCCGGAGTGCGCTCCCAGTATGAGCAATaGATCATGGCGAGCTCGGGT | + |
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Preference number: 4 (lower is better) Translates to: RKGRPLEGSASRSCPGVRSQYEQ*IMASSG Trigger: ACCCGAGCTCGCCATGATGCATTGCTCATACTGGGA...GCGCACTCCGGGACAGCTTCTGGATGCAGAGCCCTCGAGCGGTCTGCCCTTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR TCA 90 bp | GCCGGCTGGGGCCACAAGCCCGTGTGGGCCGGCCATGACGAGTTTCACATTTCTACGGGAACTTGGCTATaGTGTACTGGTAGATGCCGG | + |
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Preference number: 4 (lower is better) Translates to: AGWGHKPVWAGHDEFHISTGTWL*CTGRCR Trigger: CCGGCATCTACCAGTACATCATAGCCAAGTTCCCGT...AGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCAGCCGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR GCA 90 bp | GTGTCATCTGGGCGGTGTGTACCAGCCAGGCAGAGATCTCTTCTGGCATCCGGGTTGAGGAACCCCGATTaGAGGTACTTGGGTGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: VSSGRCVPARQRSLLASGLRNPD*RYLGGA Trigger: GGCGCCACCCAAGTACCTGCAATCGGGGTTCCTCAA...CCCGGATGCCAGAAGAGATCTCTGCCTGGCTGGTACACACCGCCCAGATGACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR TCA 90 bp | GCGGCTTCTGATCAGTTCCAGGAGGGATCGCAGAGCGACCAGACACGTTCTTTCGTCGTGGTCCCAGTATaGGCAATGCATCATGGCGAG | + |
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Preference number: 4 (lower is better) Translates to: AASDQFQEGSQSDQTRSFVVVPV*AMHHGE Trigger: CTCGCCATGATGCATTGCTCATACTGGGACCACGAC...GAAAGAACGTGTCTGGTCGCTCTGCGATCCCTCCTGGAACTGATCAGAAGCCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS TCA 90 bp | CCCGCCGCTCCTCCGCTCCCGAAGAGCCCCTTGCCGGGCTGGAAGTaGGCGGGCGGCGGCCGGAAGGGCCGCTTCATGCGGCGGCGGCGC | + |
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Preference number: 5 (lower is better) Translates to: PAAPPLPKSPLPGWK*AGGGRKGRFMRRRR Trigger: GCGCCGCCGCCGCATGAAGCGGCCCTTCCGGCCGCCGCCCGCTCACTTCCAGCCCGGCAAGGGGCTCTTCGGGAGCGGAGGAGCGGCGGG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR CAA 90 bp | CACGGAGTGGGCGGCCTCCGGCCAGCAGCACGGGAAAGCAGAGGCCGCGGCGGGCATGGCGAGCTCGGGTaGCCGGGCGCAGGCGAACTG | + |
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Preference number: 5 (lower is better) Translates to: HGVGGLRPAARESRGRGGHGELG*PGAGEL Trigger: CAGTTCGCCTGCGCCCGGCAACCCGAGCTCGCCATG...CCCGCCGCGGCCTCTGCTTTCCCGTGCTGCTGGCCGGAGGCCGCCCACTCCGTG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS GCA 90 bp | CCCCCAGGCCGTTGTAGGAGTTCACGACGCCCGGAGGCAGCGCCATaGTCTGCACGCGCGAGTACGGCCCGTAGGAGGCGGCGGGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: PPGRCRSSRRPEAAP*SARASTARRRRRGP Trigger: CGGGCCCCGCCGCCTCCTACGGGCCGTACTCGCGCGTGCAGAGCATGGCGCTGCCTCCGGGCGTCGTGAACTCCTACAACGGCCTGGGGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CCA 90 bp | GCGCGCCCGTCTTGCTGTCGTGGTCCCAGTATGAGCAATGCATCATaGCGAGCTCGGGTTGCCGGGCGCAGGCGAACTGCAGGCCGGGCG | + |
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Preference number: 5 (lower is better) Translates to: ARPSCCRGPSMSNAS*RARVAGRRRTAGRA Trigger: CGCCCGGCCTGCAGTTCGCCTGCGCCCGGCAACCCGAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGACGGGCGCGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR CAA 90 bp | AAAGCGGAGTCGCAGGAGCGGGGCGGACCGAGGAAGGGCAGACCGCTCGAGGGCTGCAGCGCGCCCGTCTaGCTGTCGTGGTCCCAGTAT | + |
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Preference number: 5 (lower is better) Translates to: KAESQERGGPRKGRPLEGCSAPV*LSWSQY Trigger: ATACTGGGACCACGACAGCAAGACGGGCGCGCTGCA...GCCCTCGAGCGGTCTGCCCTTCCTCGGTCCGCCCCGCTCCTGCGACTCCGCTTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS TCA 90 bp | CGTAGGGCATGGGCGAGGGAGGCTGCGGCAGGGGCCAGGAGTTGTTaGGGAACCCCGATTGCAGGTACTTGGGTGGCGCCAGGTAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: RRAWAREAAAGARSC*GTPIAGTWVAPGSH Trigger: ATGGCTACCTGGCGCCACCCAAGTACCTGCAATCGGGGTTCCTCAACAACTCCTGGCCCCTGCCGCAGCCTCCCTCGCCCATGCCCTACG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS TCA 90 bp | CAGACGCGAGTGCAGCGCGCCCGTCTTGCTGTCGTGGTCCCAGTATaGGCAATGCATCATGGCGAGCTCGGGTTGCCGGGCGCAGGCGAA | + |
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Preference number: 5 (lower is better) Translates to: QTRVQRARLAVVVPV*AMHHGELGLPGAGE Trigger: TTCGCCTGCGCCCGGCAACCCGAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGACGGGCGCGCTGCACTCGCGTCTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS GCA 90 bp | GAGTGCAGCGCGCCCGTCTTGCTGTCGTGGTCCCAGTATGAGCAATaGATCATGGCGAGCTCGGGTTGCCGGGCGCAGGCGAACTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: ECSAPVLLSWSQYEQ*IMASSGCRAQANCR Trigger: CCTGCAGTTCGCCTGCGCCCGGCAACCCGAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGACGGGCGCGCTGCACTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS-3UTR CAA 90 bp | TGGGGCCACAAGCCCGTGTGGGCCGGCCATGACGAGTTTCACATTTCTCCTTCCGTTGAGGAACCCCGATaGCAGGTACTTGGGTGGCGC | + |
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Preference number: 5 (lower is better) Translates to: WGHKPVWAGHDEFHISPSVEEPR*QVLGWR Trigger: GCGCCACCCAAGTACCTGCAATCGGGGTTCCTCAAC...GGAAGGAGAAATGTGAAACTCGTCATGGCCGGCCCACACGGGCTTGTGGCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CAA 72 bp | ACGGGGGCTTCTGCGCGGGGTCTGGTTTCTCCGGTGTaGTCCCGCCTCCCTTGCCGGGACTCGGCGGCGACG | + |
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Preference number: 6 (lower is better) Translates to: TGASARGLVSPV*SRLPCRDSAAT Trigger: CGTCGCCGCCGAGTCCCGGCAAGGGAGGCGGGACAACACCGGAGAAACCAGACCCCGCGCAGAAGCCCCCGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CAA 90 bp | CGTACGAGTACGGGGGCTTCTGCGCGGGGTCTGGTTTCTCCGGTGTaGTCCCGCCTCCCTTGCCGGGACTCGGCGGCGACGCCTCGGCCT | + |
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Preference number: 6 (lower is better) Translates to: RTSTGASARGLVSPV*SRLPCRDSAATPRP Trigger: AGGCCGAGGCGTCGCCGCCGAGTCCCGGCAAGGGAGGCGGGACAACACCGGAGAAACCAGACCCCGCGCAGAAGCCCCCGTACTCGTACG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CAA 90 bp | GGCTTCTGCGCGGGGTCTGGTTTCTCCGGTGTTGTCCCGCCTCCCTaGCCGGGACTCGGCGGCGACGCCTCGGCCTCTTTGACTGCGCGT | + |
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Preference number: 6 (lower is better) Translates to: GFCAGSGFSGVVPPP*PGLGGDASASLTAR Trigger: ACGCGCAGTCAAAGAGGCCGAGGCGTCGCCGCCGAGTCCCGGCAAGGGAGGCGGGACAACACCGGAGAAACCAGACCCCGCGCAGAAGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS GCA 72 bp | CGTTGTAGGAGTTCACGACGCCCGGAGGCAGCGCCATaGTCTGCACGCGCGAGTACGGCCCGTAGGAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: RCRSSRRPEAAP*SARASTARRRR Trigger: CCGCCTCCTACGGGCCGTACTCGCGCGTGCAGAGCATGGCGCTGCCTCCGGGCGTCGTGAACTCCTACAACG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CCA 72 bp | CGCCACGTACGAGTACGGGGGCTTCTGCGCGGGGTCTaGTTTCTCCGGTGTTGTCCCGCCTCCCTTGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: RHVRVRGLLRGV*FLRCCPASLAG Trigger: CCCGGCAAGGGAGGCGGGACAACACCGGAGAAACCAGACCCCGCGCAGAAGCCCCCGTACTCGTACGTGGCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CAA 90 bp | CGAGGGAGGCTGCGGCAGGGGCCAGGAGTTGTTGAGGAACCCCGATaGCAGGTACTTGGGTGGCGCCAGGTAGCCATAGCCATCGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: RGRLRQGPGVVEEPR*QVLGWRQVAIAIGP Trigger: GGGGCCGATGGCTATGGCTACCTGGCGCCACCCAAGTACCTGCAATCGGGGTTCCTCAACAACTCCTGGCCCCTGCCGCAGCCTCCCTCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS TCA 72 bp | TGGGCGAGGGAGGCTGCGGCAGGGGCCAGGAGTTGTTaGGGAACCCCGATTGCAGGTACTTGGGTGGCGCCA | + |
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Preference number: 6 (lower is better) Translates to: WAREAAAGARSC*GTPIAGTWVAP Trigger: TGGCGCCACCCAAGTACCTGCAATCGGGGTTCCTCAACAACTCCTGGCCCCTGCCGCAGCCTCCCTCGCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS GCA 72 bp | GCGCCCGTCTTGCTGTCGTGGTCCCAGTATGAGCAATaGATCATGGCGAGCTCGGGTTGCCGGGCGCAGGCG | + |
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Preference number: 6 (lower is better) Translates to: APVLLSWSQYEQ*IMASSGCRAQA Trigger: CGCCTGCGCCCGGCAACCCGAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGACGGGCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CAA 72 bp | GGCATGGGCGAGGGAGGCTGCGGCAGGGGCCAGGAGTaGTTGAGGAACCCCGATTGCAGGTACTTGGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: GMGEGGCGRGQE*LRNPDCRYLGG Trigger: GCCACCCAAGTACCTGCAATCGGGGTTCCTCAACAACTCCTGGCCCCTGCCGCAGCCTCCCTCGCCCATGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS TCA 72 bp | GTGCAGCGCGCCCGTCTTGCTGTCGTGGTCCCAGTATaGGCAATGCATCATGGCGAGCTCGGGTTGCCGGGC | + |
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Preference number: 6 (lower is better) Translates to: VQRARLAVVVPV*AMHHGELGLPG Trigger: GCCCGGCAACCCGAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGACGGGCGCGCTGCAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CAA 72 bp | CTGCGGCAGGGGCCAGGAGTTGTTGAGGAACCCCGATaGCAGGTACTTGGGTGGCGCCAGGTAGCCATAGCC | + |
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Preference number: 6 (lower is better) Translates to: LRQGPGVVEEPR*QVLGWRQVAIA Trigger: GGCTATGGCTACCTGGCGCCACCCAAGTACCTGCAATCGGGGTTCCTCAACAACTCCTGGCCCCTGCCGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CCA 72 bp | GGAGTTGTTGAGGAACCCCGATTGCAGGTACTTGGGTaGCGCCAGGTAGCCATAGCCATCGGCCCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: GVVEEPRLQVLG*RQVAIAIGPSS Trigger: GGAGCTGGGGCCGATGGCTATGGCTACCTGGCGCCACCCAAGTACCTGCAATCGGGGTTCCTCAACAACTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CCA 72 bp | TCCAGACGCGAGTGCAGCGCGCCCGTCTTGCTGTCGTaGTCCCAGTATGAGCAATGCATCATGGCGAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: SRRECSAPVLLS*SQYEQCIMASS Trigger: CGAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGACGGGCGCGCTGCACTCGCGTCTGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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| CDS CCA 72 bp | TCTTGCTGTCGTGGTCCCAGTATGAGCAATGCATCATaGCGAGCTCGGGTTGCCGGGCGCAGGCGAACTGCA | + |
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Preference number: 6 (lower is better) Translates to: SCCRGPSMSNAS*RARVAGRRRTA Trigger: TGCAGTTCGCCTGCGCCCGGCAACCCGAGCTCGCCATGATGCATTGCTCATACTGGGACCACGACAGCAAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051312.5 |
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