RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FOXL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000097084

Ensembl transcript IDs: ENSMUST00000181609.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACGACTTTGGCCGGCACGGGTACGCTGCTCCAAACCCTCAGTCTCTaGCAGGGCAGAGACCGGGGCGACTCCTTCGCCCACAGGCATTGG +
Preference number: 1 (lower is better)
Translates to: TTLAGTGTLLQTLSL*QGRDRGDSFAHRHW
Trigger: CCAATGCCTGTGGGCGAAGGAGTCGCCCCGGTCTCTGCCCTGGCAGAGACTGAGGGTTTGGAGCAGCGTACCCGTGCCGGCCAAAGTCGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CCA 90 bp CCCTCAGGGTCAGCAGGAGACTCAGGTCCGAGTGGGGACTTGTGGTaGTCACTGTACAACGCCGCCAAAGCCTACGAGGGGCTTCTGCTG +
Preference number: 1 (lower is better)
Translates to: PSGSAGDSGPSGDLW*SLYNAAKAYEGLLL
Trigger: CAGCAGAAGCCCCTCGTAGGCTTTGGCGGCGTTGTACAGTGACCACCACAAGTCCCCACTCGGACCTGAGTCTCCTGCTGACCCTGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CCA 90 bp CTGCCCTCAGGGTCAGCAGGAGACTCAGGTCCGAGTGGGGACTTGTaGTGGTCACTGTACAACGCCGCCAAAGCCTACGAGGGGCTTCTG +
Preference number: 1 (lower is better)
Translates to: LPSGSAGDSGPSGDL*WSLYNAAKAYEGLL
Trigger: CAGAAGCCCCTCGTAGGCTTTGGCGGCGTTGTACAGTGACCACCACAAGTCCCCACTCGGACCTGAGTCTCCTGCTGACCCTGAGGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR TCA 90 bp CACGGATCATCCCCAGCATCCTGGCTGCAAGCTCCCCACATCCAATaGGATCAAAGCCAAGGCCTATGCCACACGGAGCCCGCTGAGCCT +
Preference number: 1 (lower is better)
Translates to: HGSSPASWLQAPHIQ*DQSQGLCHTEPAEP
Trigger: AGGCTCAGCGGGCTCCGTGTGGCATAGGCCTTGGCTTTGATCTCATTGGATGTGGGGAGCTTGCAGCCAGGATGCTGGGGATGATCCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 90 bp CTTTCCCAGAGCCTGCGGACCACGGATCATCCCCAGCATCCTGGCTaGAAGCTCCCCACATCCAATGAGATCAAAGCCAAGGCCTATGCC +
Preference number: 1 (lower is better)
Translates to: LSQSLRTTDHPQHPG*KLPTSNEIKAKAYA
Trigger: GGCATAGGCCTTGGCTTTGATCTCATTGGATGTGGGGAGCTTGCAGCCAGGATGCTGGGGATGATCCGTGGTCCGCAGGCTCTGGGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 90 bp ACCTTAGTTGTAAACGTTAACCAGGCCTACATCTTTCCCAGAGCCTaGGGACCACGGATCATCCCCAGCATCCTGGCTGCAAGCTCCCCA +
Preference number: 1 (lower is better)
Translates to: TLVVNVNQAYIFPRA*GPRIIPSILAASSP
Trigger: TGGGGAGCTTGCAGCCAGGATGCTGGGGATGATCCGTGGTCCGCAGGCTCTGGGAAAGATGTAGGCCTGGTTAACGTTTACAACTAAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 90 bp CCAGTTGAACCTCCACATAGAGCTGTTCGCTATATCTCTAAGTCCTaGCCTCAGGGTCAGCAGGAGACTCAGGTCCGAGTGGGGACTTGT +
Preference number: 1 (lower is better)
Translates to: PVEPPHRAVRYISKS*PQGQQETQVRVGTC
Trigger: ACAAGTCCCCACTCGGACCTGAGTCTCCTGCTGACCCTGAGGGCAGGACTTAGAGATATAGCGAACAGCTCTATGTGGAGGTTCAACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR TCA 90 bp AGCAATCCCCCTGCCTCAGCCTTGCAAGGACTGAGATTACAGGTGTaGTGCACGGCATACCTTAGTTGTTGTGAGACATCACTGTGGACC +
Preference number: 1 (lower is better)
Translates to: SNPPASALQGLRLQV*CTAYLSCCETSLWT
Trigger: GGTCCACAGTGATGTCTCACAACAACTAAGGTATGCCGTGCATCACACCTGTAATCTCAGTCCTTGCAAGGCTGAGGCAGGGGGATTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 90 bp AAAGCAGAAGTGAACAGAGGACTATGCTGTGGAATGCGGCAGGTGTaGCACTGTAAAGCCAAAGTACGTGCCAAACACACGGGGCTCCTT +
Preference number: 1 (lower is better)
Translates to: KAEVNRGLCCGMRQV*HCKAKVRAKHTGLL
Trigger: AAGGAGCCCCGTGTGTTTGGCACGTACTTTGGCTTTACAGTGGCACACCTGCCGCATTCCACAGCATAGTCCTCTGTTCACTTCTGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR TCA 90 bp ATCCTTAAACTCACAGCAATCCCCCTGCCTCAGCCTTGCAAGGACTaGGATTACAGGTGTGATGCACGGCATACCTTAGTTGTTGTGAGA +
Preference number: 1 (lower is better)
Translates to: ILKLTAIPLPQPCKD*DYRCDARHTLVVVR
Trigger: TCTCACAACAACTAAGGTATGCCGTGCATCACACCTGTAATCTCAGTCCTTGCAAGGCTGAGGCAGGGGGATTGCTGTGAGTTTAAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CCA 90 bp GGGAGCCTGGTTTATAAGCCAAGAATAAATGAGCCTTTCCCTGTCTaGAAGAAGGTTTATCTATTCATATTGAGCATTTCCGGTGAGCCT +
Preference number: 1 (lower is better)
Translates to: GSLVYKPRINEPFPV*KKVYLFILSISGEP
Trigger: AGGCTCACCGGAAATGCTCAATATGAATAGATAAACCTTCTTCCAGACAGGGAAAGGCTCATTTATTCTTGGCTTATAAACCAGGCTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CAA 90 bp GTCCTGCCCTCAGGGTCAGCAGGAGACTCAGGTCCGAGTGGGGACTaGTGGTGGTCACTGTACAACGCCGCCAAAGCCTACGAGGGGCTT +
Preference number: 2 (lower is better)
Translates to: VLPSGSAGDSGPSGD*WWSLYNAAKAYEGL
Trigger: AAGCCCCTCGTAGGCTTTGGCGGCGTTGTACAGTGACCACCACAAGTCCCCACTCGGACCTGAGTCTCCTGCTGACCCTGAGGGCAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR GCA 90 bp AAGCTATCCTTAAACTCACAGCAATCCCCCTGCCTCAGCCTTGCAAGGACTGAGCAAACCCTCAGTCTCTaGCAGGGCAGAGACCGGGGC +
Preference number: 2 (lower is better)
Translates to: KLSLNSQQSPCLSLARTEQTLSL*QGRDRG
Trigger: GCCCCGGTCTCTGCCCTGGCAGAGACTGAGGGTTTG...CTCAGTCCTTGCAAGGCTGAGGCAGGGGGATTGCTGTGAGTTTAAGGATAGCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR GCA 90 bp CTCCTGGAAGCTATCTATCTCCCACACTCAGGAGTAGTATGCTCCCCCAGCCTCTATATCTCTAAGTCCTaGCCTCAGGGTCAGCAGGAG +
Preference number: 2 (lower is better)
Translates to: LLEAIYLPHSGVVCSPSLYISKS*PQGQQE
Trigger: CTCCTGCTGACCCTGAGGGCAGGACTTAGAGATATA...GAGGCTGGGGGAGCATACTACTCCTGAGTGTGGGAGATAGATAGCTTCCAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR TCA 90 bp TGTTCAACCTTAGTTGTAAACGTTAACCAGGCCTACATCTTTCCCAGAGCCTGCGCTCCCCACATCCAATaGGATCAAAGCCAAGGCCTA +
Preference number: 2 (lower is better)
Translates to: CSTLVVNVNQAYIFPRACAPHIQ*DQSQGL
Trigger: TAGGCCTTGGCTTTGATCTCATTGGATGTGGGGAGC...GCAGGCTCTGGGAAAGATGTAGGCCTGGTTAACGTTTACAACTAAGGTTGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR TCA 90 bp TATGCTGTGGAATGCGGCAGGTGTGCCACTGTAAAGCCAAAGTACGTGCCAAACTTTATCTATTCATATTaGGCATTTCCGGTGAGCCTG +
Preference number: 2 (lower is better)
Translates to: YAVECGRCATVKPKYVPNFIYSY*AFPVSL
Trigger: CAGGCTCACCGGAAATGCTCAATATGAATAGATAAA...GTTTGGCACGTACTTTGGCTTTACAGTGGCACACCTGCCGCATTCCACAGCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR TCA 90 bp TGTTGTGAGACATCACTGTGGACCTATGCCCTAGAATTCTTAATTTTTGGTCCTGCACTTTCCTTCCTCTaGAAGCTGAGTTGCAGAGCC +
Preference number: 2 (lower is better)
Translates to: CCETSLWTYALEFLIFGPALSFL*KLSCRA
Trigger: GGCTCTGCAACTCAGCTTTCAGAGGAAGGAAAGTGC...AGGACCAAAAATTAAGAATTCTAGGGCATAGGTCCACAGTGATGTCTCACAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR GCA 90 bp TGTTGTGAGACATCACTGTGGACCTATGCCCTAGAATTCTTAATTTTTGGTCCTGACTATGCTGTGGAATaGGGCAGGTGTGCCACTGTA +
Preference number: 2 (lower is better)
Translates to: CCETSLWTYALEFLIFGPDYAVE*GRCATV
Trigger: TACAGTGGCACACCTGCCGCATTCCACAGCATAGTC...AGGACCAAAAATTAAGAATTCTAGGGCATAGGTCCACAGTGATGTCTCACAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR CCA 90 bp TGTTCAACCTTAGTTGTAAACGTTAACCAGGCCTACATCTTTCCCAGAGCCTGCGACCATGTCCTCTACTaGACCAGTCTTTTAAATCTG +
Preference number: 2 (lower is better)
Translates to: CSTLVVNVNQAYIFPRACDHVLY*TSLLNL
Trigger: CAGATTTAAAAGACTGGTCCAGTAGAGGACATGGTC...GCAGGCTCTGGGAAAGATGTAGGCCTGGTTAACGTTTACAACTAAGGTTGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR-3UTR CCA 90 bp AAGCTATCCTTAAACTCACAGCAATCCCCCTGCCTCAGCCTTGCAAGGACTGAGTCTGGTCACCTCTTATaGGTTTATGTAATGTCAATA +
Preference number: 2 (lower is better)
Translates to: KLSLNSQQSPCLSLARTESGHLL*VYVMSI
Trigger: TATTGACATTACATAAACCCATAAGAGGTGACCAGA...CTCAGTCCTTGCAAGGCTGAGGCAGGGGGATTGCTGTGAGTTTAAGGATAGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 72 bp GCCGGCACGGGTACGCTGCTCCAAACCCTCAGTCTCTaGCAGGGCAGAGACCGGGGCGACTCCTTCGCCCAC +
Preference number: 3 (lower is better)
Translates to: AGTGTLLQTLSL*QGRDRGDSFAH
Trigger: GTGGGCGAAGGAGTCGCCCCGGTCTCTGCCCTGGCAGAGACTGAGGGTTTGGAGCAGCGTACCCGTGCCGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR TCA 72 bp CAAAGCCTACGAGGGGCTTCTGCTGGAGACGAACCGTaGGGGCTGAGTGTGCGGCGACCATGTCCTCTACTG +
Preference number: 3 (lower is better)
Translates to: QSLRGASAGDEP*GLSVRRPCPLL
Trigger: CAGTAGAGGACATGGTCGCCGCACACTCAGCCCTCACGGTTCGTCTCCAGCAGAAGCCCCTCGTAGGCTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 72 bp CATCTTCGGAGAAAGCAGATGGACGAGGCCCCTCAGTaGACGACTTTGGCCGGCACGGGTACGCTGCTCCAA +
Preference number: 3 (lower is better)
Translates to: HLRRKQMDEAPQ*TTLAGTGTLLQ
Trigger: TTGGAGCAGCGTACCCGTGCCGGCCAAAGTCGTGCACTGAGGGGCCTCGTCCATCTGCTTTCTCCGAAGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CCA 72 bp GGGTCAGCAGGAGACTCAGGTCCGAGTGGGGACTTGTaGTGGTCACTGTACAACGCCGCCAAAGCCTACGAG +
Preference number: 3 (lower is better)
Translates to: GSAGDSGPSGDL*WSLYNAAKAYE
Trigger: CTCGTAGGCTTTGGCGGCGTTGTACAGTGACCACCACAAGTCCCCACTCGGACCTGAGTCTCCTGCTGACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 72 bp AGCCTGCGGACCACGGATCATCCCCAGCATCCTGGCTaGAAGCTCCCCACATCCAATGAGATCAAAGCCAAG +
Preference number: 3 (lower is better)
Translates to: SLRTTDHPQHPG*KLPTSNEIKAK
Trigger: CTTGGCTTTGATCTCATTGGATGTGGGGAGCTTGCAGCCAGGATGCTGGGGATGATCCGTGGTCCGCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 72 bp GTAAACGTTAACCAGGCCTACATCTTTCCCAGAGCCTaGGGACCACGGATCATCCCCAGCATCCTGGCTGCA +
Preference number: 3 (lower is better)
Translates to: VNVNQAYIFPRA*GPRIIPSILAA
Trigger: TGCAGCCAGGATGCTGGGGATGATCCGTGGTCCGCAGGCTCTGGGAAAGATGTAGGCCTGGTTAACGTTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 72 bp CCTCCACATAGAGCTGTTCGCTATATCTCTAAGTCCTaGCCTCAGGGTCAGCAGGAGACTCAGGTCCGAGTG +
Preference number: 3 (lower is better)
Translates to: PPHRAVRYISKS*PQGQQETQVRV
Trigger: CACTCGGACCTGAGTCTCCTGCTGACCCTGAGGGCAGGACTTAGAGATATAGCGAACAGCTCTATGTGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR TCA 72 bp AGATCAAAGCCAAGGCCTATGCCACACGGAGCCCGCTaGGCCTTCCATGATCCAGTTGAACCTCCACATAGA +
Preference number: 3 (lower is better)
Translates to: RSKPRPMPHGAR*AFHDPVEPPHR
Trigger: TCTATGTGGAGGTTCAACTGGATCATGGAAGGCTCAGCGGGCTCCGTGTGGCATAGGCCTTGGCTTTGATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR TCA 72 bp CCACCAGCAAGCTTAAACATGGGCACCCCAAAGGCCTaGGAGTTTCCCCCAAATTTGGAAGCAGGACTGCAC +
Preference number: 3 (lower is better)
Translates to: PPASLNMGTPKA*EFPPNLEAGLH
Trigger: GTGCAGTCCTGCTTCCAAATTTGGGGGAAACTCTCAGGCCTTTGGGGTGCCCATGTTTAAGCTTGCTGGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 72 bp GGAAGCAGGACTGCACTGCACGGTAACCAACTTAGTTaGCTTAGTCAGCACTTTGTTGATCTCCCCACCCCC +
Preference number: 3 (lower is better)
Translates to: GSRTALHGNQLS*LSQHFVDLPTP
Trigger: GGGGGTGGGGAGATCAACAAAGTGCTGACTAAGGCAACTAAGTTGGTTACCGTGCAGTGCAGTCCTGCTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR GCA 72 bp GTGAACAGAGGACTATGCTGTGGAATGCGGCAGGTGTaGCACTGTAAAGCCAAAGTACGTGCCAAACACACG +
Preference number: 3 (lower is better)
Translates to: VNRGLCCGMRQV*HCKAKVRAKHT
Trigger: CGTGTGTTTGGCACGTACTTTGGCTTTACAGTGGCACACCTGCCGCATTCCACAGCATAGTCCTCTGTTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CCA 72 bp CCCTCCCCCTCAACCCCGCTCTCTGGTCACCTCTTATaGGTTTATGTAATGTCAATATCTAGATCTCCCTGG +
Preference number: 3 (lower is better)
Translates to: PSPSTPLSGHLL*VYVMSISRSPW
Trigger: CCAGGGAGATCTAGATATTGACATTACATAAACCCATAAGAGGTGACCAGAGAGCGGGGTTGAGGGGGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CCA 72 bp TGCACGGCATACCTTAGTTGTTGTGAGACATCACTGTaGACCTATGCCCTAGAATTCTTAATTTTTGGTCCT +
Preference number: 3 (lower is better)
Translates to: CTAYLSCCETSL*TYALEFLIFGP
Trigger: AGGACCAAAAATTAAGAATTCTAGGGCATAGGTCCACAGTGATGTCTCACAACAACTAAGGTATGCCGTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR GCA 90 bp TCGGAGAAAGCAGATGGACGAGGCCCCTCAGTGCACGACTTTGGCCGGCACGGGGGACCCCAGGTGGTGTaGCGGACGCTGGAGCTGGCC +
Preference number: 4 (lower is better)
Translates to: SEKADGRGPSVHDFGRHGGPQVV*RTLELA
Trigger: GGCCAGCTCCAGCGTCCGGCACACCACCTGGGGTCC...CCCGTGCCGGCCAAAGTCGTGCACTGAGGGGCCTCGTCCATCTGCTTTCTCCGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR TCA 90 bp TGCGGACCACGGATCATCCCCAGCATCCTGGCTGCAAGCTCCCCACATCCAATGCGGTGCTTCGGCCCCTaGGGCTGGCGTCGGTCTCAC +
Preference number: 4 (lower is better)
Translates to: CGPRIIPSILAASSPHPMRCFGP*GWRRSH
Trigger: GTGAGACCGACGCCAGCCTCAGGGGCCGAAGCACCG...CATTGGATGTGGGGAGCTTGCAGCCAGGATGCTGGGGATGATCCGTGGTCCGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CCA 90 bp GGCATGGTGGAGTACGCCTTTAATCCCAGCTCTCGGGAGGCAGAGGCAGGCCAGAACCCGCGGCGGGCTTaGGCTTCCTCTTCCTGCGCC +
Preference number: 4 (lower is better)
Translates to: GMVEYAFNPSSREAEAGQNPRRA*ASSSCA
Trigger: GGCGCAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTT...CTGGCCTGCCTCTGCCTCCCGAGAGCTGGGATTAAAGGCGTACTCCACCATGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CCA 90 bp TCGGAGAAAGCAGATGGACGAGGCCCCTCAGTGCACGACTTTGGCCGGCACGGGTGGTGTGCCGGACGCTaGAGCTGGCCGCTTGCCACT +
Preference number: 4 (lower is better)
Translates to: SEKADGRGPSVHDFGRHGWCAGR*SWPLAT
Trigger: AGTGGCAAGCGGCCAGCTCCAGCGTCCGGCACACCA...CCCGTGCCGGCCAAAGTCGTGCACTGAGGGGCCTCGTCCATCTGCTTTCTCCGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CCA 90 bp GGCATGGTGGAGTACGCCTTTAATCCCAGCTCTCGGGAGGCAGAGGCAGGCCAGTGGGAAAAGCCGCCCTaGACGTGCGCGTCGAAGACC +
Preference number: 4 (lower is better)
Translates to: GMVEYAFNPSSREAEAGQWEKPP*TCASKT
Trigger: GGTCTTCGACGCGCACGTCCAGGGCGGCTTTTCCCA...CTGGCCTGCCTCTGCCTCCCGAGAGCTGGGATTAAAGGCGTACTCCACCATGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CCA 90 bp TCGGAGAAAGCAGATGGACGAGGCCCCTCAGTGCACGACTTTGGCCGGCACGGGAAGGGAATCCCCAGCTaGGAAAAGCCGCCCTGGACG +
Preference number: 4 (lower is better)
Translates to: SEKADGRGPSVHDFGRHGKGIPS*EKPPWT
Trigger: CGTCCAGGGCGGCTTTTCCCAGCTGGGGATTCCCTT...CCCGTGCCGGCCAAAGTCGTGCACTGAGGGGCCTCGTCCATCTGCTTTCTCCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR GCA 90 bp AAGTCATCTTCGGAGAAAGCAGATGGACGAGGCCCCTCAGTGCACGACTTTGGCCTGGCCGCTTGCCACTaGCCCTGCGCCCTGGACTGT +
Preference number: 4 (lower is better)
Translates to: KSSSEKADGRGPSVHDFGLAACH*PCALDC
Trigger: ACAGTCCAGGGCGCAGGGGCAGTGGCAAGCGGCCAG...GCCAAAGTCGTGCACTGAGGGGCCTCGTCCATCTGCTTTCTCCGAAGATGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
3UTR CAA 72 bp TCAGGGTCAGCAGGAGACTCAGGTCCGAGTGGGGACTaGTGGTGGTCACTGTACAACGCCGCCAAAGCCTAC +
Preference number: 4 (lower is better)
Translates to: SGSAGDSGPSGD*WWSLYNAAKAY
Trigger: GTAGGCTTTGGCGGCGTTGTACAGTGACCACCACAAGTCCCCACTCGGACCTGAGTCTCCTGCTGACCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR GCA 90 bp TGCGGACCACGGATCATCCCCAGCATCCTGGCTGCAAGCTCCCCACATCCAATGTGGGCTTCCTCTTCCTaGGCCGATAATTGCCGTTCT +
Preference number: 4 (lower is better)
Translates to: CGPRIIPSILAASSPHPMWASSS*ADNCRS
Trigger: AGAACGGCAATTATCGGCGCAGGAAGAGGAAGCCCA...CATTGGATGTGGGGAGCTTGCAGCCAGGATGCTGGGGATGATCCGTGGTCCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR TCA 90 bp AAGTCATCTTCGGAGAAAGCAGATGGACGAGGCCCCTCAGTGCACGACTTTGGCAGATGCCGTTCAGTGTaGCCCTCTGCTCGGGAGCAT +
Preference number: 4 (lower is better)
Translates to: KSSSEKADGRGPSVHDFGRCRSV*PSAREH
Trigger: ATGCTCCCGAGCAGAGGGTCACACTGAACGGCATCT...GCCAAAGTCGTGCACTGAGGGGCCTCGTCCATCTGCTTTCTCCGAAGATGACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR GCA 90 bp AAGCTATCCTTAAACTCACAGCAATCCCCCTGCCTCAGCCTTGCAAGGACTGAGTTCAGTGTGACCCTCTaGTCGGGAGCATCCTGGATC +
Preference number: 4 (lower is better)
Translates to: KLSLNSQQSPCLSLARTEFSVTL*SGASWI
Trigger: GATCCAGGATGCTCCCGAGCAGAGGGTCACACTGAA...CTCAGTCCTTGCAAGGCTGAGGCAGGGGGATTGCTGTGAGTTTAAGGATAGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR GCA 90 bp TGTTGTGAGACATCACTGTGGACCTATGCCCTAGAATTCTTAATTTTTGGTCCTTCCAGTAGCTGCCCTTaGCCGGCCGCCCCTTCTCAC +
Preference number: 4 (lower is better)
Translates to: CCETSLWTYALEFLIFGPSSSCP*PAAPSH
Trigger: GTGAGAAGGGGCGGCCGGGCAAGGGCAGCTACTGGA...AGGACCAAAAATTAAGAATTCTAGGGCATAGGTCCACAGTGATGTCTCACAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR GCA 90 bp TATGCTGTGGAATGCGGCAGGTGTGCCACTGTAAAGCCAAAGTACGTGCCAAACTCCTGCGCCGATAATTaGCGTTCTCAAACATGTCCA +
Preference number: 4 (lower is better)
Translates to: YAVECGRCATVKPKYVPNSCADN*RSQTCP
Trigger: TGGACATGTTTGAGAACGGCAATTATCGGCGCAGGA...GTTTGGCACGTACTTTGGCTTTACAGTGGCACACCTGCCGCATTCCACAGCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CCA 90 bp TGTTGTGAGACATCACTGTGGACCTATGCCCTAGAATTCTTAATTTTTGGTCCTTGCTCGGGAGCATCCTaGATCGCCATGGCTATAAGA +
Preference number: 4 (lower is better)
Translates to: CCETSLWTYALEFLIFGPCSGAS*IAMAIR
Trigger: TCTTATAGCCATGGCGATCCAGGATGCTCCCGAGCA...AGGACCAAAAATTAAGAATTCTAGGGCATAGGTCCACAGTGATGTCTCACAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR TCA 90 bp TGTTGTGAGACATCACTGTGGACCTATGCCCTAGAATTCTTAATTTTTGGTCCTAGATGCTGTCGATGCTaGAACTCTTTGACTTGGAAC +
Preference number: 4 (lower is better)
Translates to: CCETSLWTYALEFLIFGPRCCRC*NSLTWN
Trigger: GTTCCAAGTCAAAGAGTTTCAGCATCGACAGCATCT...AGGACCAAAAATTAAGAATTCTAGGGCATAGGTCCACAGTGATGTCTCACAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 90 bp CCCGGGGCTCAGGGCCGGGCCAGGGAAGGAGCGCGGGCCGCGCGGTaGCTACTGCCGGGGATTGGGAGCGATCCGGCGCGCGCGTCGGGA +
Preference number: 5 (lower is better)
Translates to: PGAQGRAREGARAAR*LLPGIGSDPARASG
Trigger: TCCCGACGCGCGCGCCGGATCGCTCCCAATCCCCGGCAGTAGGCACCGCGCGGCCCGCGCTCCTTCCCTGGCCCGGCCCTGAGCCCCGGG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CCA 90 bp CATCGCAGCCCACCTCGGACTCCGGCGGCTCGACCCGGGTGCGCTTaGCCTCCGGGGAACCCGCGGCGGGCTTGGGCTTCCTCTTCCTGC +
Preference number: 5 (lower is better)
Translates to: HRSPPRTPAARPGCA*PPGNPRRAWASSSC
Trigger: GCAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTTCCCCGGAGGCCAAGCGCACCCGGGTCGAGCCGCCGGAGTCCGAGGTGGGCTGCGATG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 90 bp ACCCTACATCGCAGCCCACCTCGGACTCCGGCGGCTCGACCCGGGTaGGCTTGGCCTCCGGGGAACCCGCGGCGGGCTTGGGCTTCCTCT +
Preference number: 5 (lower is better)
Translates to: TLHRSPPRTPAARPG*AWPPGNPRRAWASS
Trigger: AGAGGAAGCCCAAGCCCGCCGCGGGTTCCCCGGAGGCCAAGCGCACCCGGGTCGAGCCGCCGGAGTCCGAGGTGGGCTGCGATGTAGGGT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CAA 90 bp CAGAGACCGGGGCGACTCCTTCGCCCACAGGCATTGGCTCACTGGAGGTGGGGGTCGACCCGGGTGCGCTaGGCCTCCGGGGAACCCGCG +
Preference number: 5 (lower is better)
Translates to: QRPGRLLRPQALAHWRWGSTRVR*ASGEPA
Trigger: CGCGGGTTCCCCGGAGGCCAAGCGCACCCGGGTCGA...CCCCCACCTCCAGTGAGCCAATGCCTGTGGGCGAAGGAGTCGCCCCGGTCTCTG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS TCA 90 bp GGGAAAAGCCGCCCTGGACGTGCGCGTCGAAGACCAGCGAAGCGTTaGAGGGAGGCGCTAGGCCGGAGGAGGCAGCCAGCAGAGAGGAGC +
Preference number: 5 (lower is better)
Translates to: GKSRPGRARRRPAKR*REALGRRRQPAERS
Trigger: GCTCCTCTCTGCTGGCTGCCTCCTCCGGCCTAGCGCCTCCCTTCAACGCTTCGCTGGTCTTCGACGCGCACGTCCAGGGCGGCTTTTCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CCA 90 bp GCTCGACCCGGGTGCGCTTGGCCTCCGGGGAACCCGCGGCGGGCTTaGGCTTCCTCTTCCTGCGCCGATAATTGCCGTTCTCAAACATGT +
Preference number: 5 (lower is better)
Translates to: ARPGCAWPPGNPRRA*ASSSCADNCRSQTC
Trigger: ACATGTTTGAGAACGGCAATTATCGGCGCAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTTCCCCGGAGGCCAAGCGCACCCGGGTCGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 90 bp GCTTGGCCTCCGGGGAACCCGCGGCGGGCTTGGGCTTCCTCTTCCTaGGCCGATAATTGCCGTTCTCAAACATGTCCAAGCAGCGGGGGT +
Preference number: 5 (lower is better)
Translates to: AWPPGNPRRAWASSS*ADNCRSQTCPSSGG
Trigger: ACCCCCGCTGCTTGGACATGTTTGAGAACGGCAATTATCGGCGCAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTTCCCCGGAGGCCAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CAA 90 bp CTCCTGGAAGCTATCTATCTCCCACACTCAGGAGTAGTATGCTCCCCCAGCCTCGAACCCGCGGCGGGCTaGGGCTTCCTCTTCCTGCGC +
Preference number: 5 (lower is better)
Translates to: LLEAIYLPHSGVVCSPSLEPAAG*GFLFLR
Trigger: GCGCAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTTC...GAGGCTGGGGGAGCATACTACTCCTGAGTGTGGGAGATAGATAGCTTCCAGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CAA 90 bp CTCCTGGAAGCTATCTATCTCCCACACTCAGGAGTAGTATGCTCCCCCAGCCTCTTGACTTGGAACCTTTaGGGGAGCCGCTGGGGGCGG +
Preference number: 5 (lower is better)
Translates to: LLEAIYLPHSGVVCSPSLLTWNL*GSRWGR
Trigger: CCGCCCCCAGCGGCTCCCCAAAAGGTTCCAAGTCAA...GAGGCTGGGGGAGCATACTACTCCTGAGTGTGGGAGATAGATAGCTTCCAGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS-3UTR CAA 90 bp AAGTCATCTTCGGAGAAAGCAGATGGACGAGGCCCCTCAGTGCACGACTTTGGCCTGAAACTCTTTGACTaGGAACCTTTTGGGGAGCCG +
Preference number: 5 (lower is better)
Translates to: KSSSEKADGRGPSVHDFGLKLFD*EPFGEP
Trigger: CGGCTCCCCAAAAGGTTCCAAGTCAAAGAGTTTCAG...GCCAAAGTCGTGCACTGAGGGGCCTCGTCCATCTGCTTTCTCCGAAGATGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 72 bp CAGGGCCGGGCCAGGGAAGGAGCGCGGGCCGCGCGGTaGCTACTGCCGGGGATTGGGAGCGATCCGGCGCGC +
Preference number: 6 (lower is better)
Translates to: QGRAREGARAAR*LLPGIGSDPAR
Trigger: GCGCGCCGGATCGCTCCCAATCCCCGGCAGTAGGCACCGCGCGGCCCGCGCTCCTTCCCTGGCCCGGCCCTG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CCA 72 bp CCACCTCGGACTCCGGCGGCTCGACCCGGGTGCGCTTaGCCTCCGGGGAACCCGCGGCGGGCTTGGGCTTCC +
Preference number: 6 (lower is better)
Translates to: PPRTPAARPGCA*PPGNPRRAWAS
Trigger: GGAAGCCCAAGCCCGCCGCGGGTTCCCCGGAGGCCAAGCGCACCCGGGTCGAGCCGCCGGAGTCCGAGGTGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CAA 72 bp AAGGAGCGCGGGCCGCGCGGTGCCTACTGCCGGGGATaGGGAGCGATCCGGCGCGCGCGTCGGGAGTGCAGT +
Preference number: 6 (lower is better)
Translates to: KERGPRGAYCRG*GAIRRARRECS
Trigger: ACTGCACTCCCGACGCGCGCGCCGGATCGCTCCCAATCCCCGGCAGTAGGCACCGCGCGGCCCGCGCTCCTT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 72 bp GTGGTGTGCCGGACGCTGGAGCTGGCCGCTTGCCACTaGCCCTGCGCCCTGGACTGTGAGGTCCGCGTCGGG +
Preference number: 6 (lower is better)
Translates to: VVCRTLELAACH*PCALDCEVRVG
Trigger: CCCGACGCGGACCTCACAGTCCAGGGCGCAGGGGCAGTGGCAAGCGGCCAGCTCCAGCGTCCGGCACACCAC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CAA 90 bp ACATCGCAGCCCACCTCGGACTCCGGCGGCTCGACCCGGGTGCGCTaGGCCTCCGGGGAACCCGCGGCGGGCTTGGGCTTCCTCTTCCTG +
Preference number: 6 (lower is better)
Translates to: TSQPTSDSGGSTRVR*ASGEPAAGLGFLFL
Trigger: CAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTTCCCCGGAGGCCAAGCGCACCCGGGTCGAGCCGCCGGAGTCCGAGGTGGGCTGCGATGT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CCA 72 bp GGGTGCGCTTGGCCTCCGGGGAACCCGCGGCGGGCTTaGGCTTCCTCTTCCTGCGCCGATAATTGCCGTTCT +
Preference number: 6 (lower is better)
Translates to: GCAWPPGNPRRA*ASSSCADNCRS
Trigger: AGAACGGCAATTATCGGCGCAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTTCCCCGGAGGCCAAGCGCACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CAA 90 bp TGGGAAAAGCCGCCCTGGACGTGCGCGTCGAAGACCAGCGAAGCGTaGAAGGGAGGCGCTAGGCCGGAGGAGGCAGCCAGCAGAGAGGAG +
Preference number: 6 (lower is better)
Translates to: WEKPPWTCASKTSEA*KGGARPEEAASREE
Trigger: CTCCTCTCTGCTGGCTGCCTCCTCCGGCCTAGCGCCTCCCTTCAACGCTTCGCTGGTCTTCGACGCGCACGTCCAGGGCGGCTTTTCCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 72 bp AAGGGAATCCCCAGCTGGGAAAAGCCGCCCTGGACGTaGGCGTCGAAGACCAGCGAAGCGTTGAAGGGAGGC +
Preference number: 6 (lower is better)
Translates to: KGIPSWEKPPWT*ASKTSEALKGG
Trigger: GCCTCCCTTCAACGCTTCGCTGGTCTTCGACGCGCACGTCCAGGGCGGCTTTTCCCAGCTGGGGATTCCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 72 bp CCGGGGAACCCGCGGCGGGCTTGGGCTTCCTCTTCCTaGGCCGATAATTGCCGTTCTCAAACATGTCCAAGC +
Preference number: 6 (lower is better)
Translates to: PGNPRRAWASSS*ADNCRSQTCPS
Trigger: GCTTGGACATGTTTGAGAACGGCAATTATCGGCGCAGGAAGAGGAAGCCCAAGCCCGCCGCGGGTTCCCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS GCA 72 bp CGGCGGGCTTGGGCTTCCTCTTCCTGCGCCGATAATTaGCGTTCTCAAACATGTCCAAGCAGCGGGGGTCCA +
Preference number: 6 (lower is better)
Translates to: RRAWASSSCADN*RSQTCPSSGGP
Trigger: TGGACCCCCGCTGCTTGGACATGTTTGAGAACGGCAATTATCGGCGCAGGAAGAGGAAGCCCAAGCCCGCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS CCA 72 bp GAAAGGAAGGGAATCCCCAGCTGGGAAAAGCCGCCCTaGACGTGCGCGTCGAAGACCAGCGAAGCGTTGAAG +
Preference number: 6 (lower is better)
Translates to: ERKGIPSWEKPP*TCASKTSEALK
Trigger: CTTCAACGCTTCGCTGGTCTTCGACGCGCACGTCCAGGGCGGCTTTTCCCAGCTGGGGATTCCCTTCCTTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2
CDS TCA 72 bp CTGGCGTCGGTCTCACGGCCAAGATGCTGTCGATGCTaGAACTCTTTGACTTGGAACCTTTTGGGGAGCCGC +
Preference number: 6 (lower is better)
Translates to: LASVSRPRCCRC*NSLTWNLLGSR
Trigger: GCGGCTCCCCAAAAGGTTCCAAGTCAAAGAGTTTCAGCATCGACAGCATCTTGGCCGTGAGACCGACGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181609.2