Pregenerated sensors for FOXI3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055874

Ensembl transcript IDs: ENSMUST00000069634.6, ENSMUST00000163089.2

Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGCGGCTGCAGCGGGCGGTGCGGCGTAGTCGGACAGCCCATAGGGTaGCCTGGAGGTCGGGGGCGCACCAGGCGCGGCGGCGGGCTGCGA	+
Preference number: 5 (lower is better) Translates to: GGCSGRCGVVGQPIG*PGGRGRTRRGGGLR Trigger: TCGCAGCCCGCCGCCGCGCCTGGTGCGCCCCCGACCTCCAGGGCACCCTATGGGCTGTCCGACTACGCCGCACCGCCCGCTGCAGCCGCC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 90 bp	CTGCAGCGGGCGGTGCGGCGTAGTCGGACAGCCCATAGGGTGCCCTaGAGGTCGGGGGCGCACCAGGCGCGGCGGCGGGCTGCGAGTATA	+
Preference number: 5 (lower is better) Translates to: LQRAVRRSRTAHRVP*RSGAHQARRRAASI Trigger: TATACTCGCAGCCCGCCGCCGCGCCTGGTGCGCCCCCGACCTCCAGGGCACCCTATGGGCTGTCCGACTACGCCGCACCGCCCGCTGCAG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 90 bp	AAGTTGTCGCCGCAATACAGGGCCATGTCGGCGACCGAGGGCTGGTaGAGAGCGGCAGCGGCTTTGGGAGAGCGGGGCTGGCCACGGCAC	+
Preference number: 5 (lower is better) Translates to: KLSPQYRAMSATEGW*RAAAALGERGWPRH Trigger: GTGCCGTGGCCAGCCCCGCTCTCCCAAAGCCGCTGCCGCTCTGCACCAGCCCTCGGTCGCCGACATGGCCCTGTATTGCGGCGACAACTT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163089.2
CDS CCA 90 bp	ACGAAGTTGTCGCCGCAATACAGGGCCATGTCGGCGACCGAGGGCTaGTGCAGAGCGGCAGCGGCTTTGGGAGAGCGGGGCTGGCCACGG	+
Preference number: 5 (lower is better) Translates to: TKLSPQYRAMSATEG*CRAAAALGERGWPR Trigger: CCGTGGCCAGCCCCGCTCTCCCAAAGCCGCTGCCGCTCTGCACCAGCCCTCGGTCGCCGACATGGCCCTGTATTGCGGCGACAACTTCGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163089.2
CDS GCA 90 bp	GCATGGAGTCTGGAGAACTGTCTGGAACGGAGGTGTTGGGGAACGTaGTGGAGGGCAGCTGGGTCCCTCCTAGGTGGCGACGGCTGCCTG	+
Preference number: 5 (lower is better) Translates to: AWSLENCLERRCWGT*WRAAGSLLGGDGCL Trigger: CAGGCAGCCGTCGCCACCTAGGAGGGACCCAGCTGCCCTCCAGCACGTTCCCCAACACCTCCGTTCCAGACAGTTCTCCAGACTCCATGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 90 bp	GCTTCCACCCACAGTGCTCAGCTGCATGGAGTCTGGAGAACTGTCTaGAACGGAGGTGTTGGGGAACGTGCTGGAGGGCAGCTGGGTCCC	+
Preference number: 5 (lower is better) Translates to: ASTHSAQLHGVWRTV*NGGVGERAGGQLGP Trigger: GGGACCCAGCTGCCCTCCAGCACGTTCCCCAACACCTCCGTTCCAGACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 90 bp	GGTGCTGAGGAAAGTGTTGAGACACGGAGTGGAGGTGAGGGTGGATaGTCCAGGAGAGGAGGCAGTACTCTTGGTGCCCTCTGGAGGCTC	+
Preference number: 5 (lower is better) Translates to: GAEESVETRSGGEGG*SRRGGSTLGALWRL Trigger: GAGCCTCCAGAGGGCACCAAGAGTACTGCCTCCTCTCCTGGAGCATCCACCCTCACCTCCACTCCGTGTCTCAACACTTTCCTCAGCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 90 bp	AGCTGGGTCCCTCCTAGGTGGCGACGGCTGCCTGGGAGGGTTCGCTaGTTGCCCATGCTGCTGCTGGAGTTGACATTTAAGGTGTTAAAG	+
Preference number: 5 (lower is better) Translates to: SWVPPRWRRLPGRVR*LPMLLLELTFKVLK Trigger: CTTTAACACCTTAAATGTCAACTCCAGCAGCAGCATGGGCAACCAGCGAACCCTCCCAGGCAGCCGTCGCCACCTAGGAGGGACCCAGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 90 bp	AGACAGCTGGTTGCTTCCACCCACAGTGCTCAGCTGCATGGAGTCTaGAGAACTGTCTGGAACGGAGGTGTTGGGGAACGTGCTGGAGGG	+
Preference number: 5 (lower is better) Translates to: RQLVASTHSAQLHGV*RTVWNGGVGERAGG Trigger: CCCTCCAGCACGTTCCCCAACACCTCCGTTCCAGACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAACCAGCTGTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 90 bp	AGTAGGAAGACAGCTGGTTGCTTCCACCCACAGTGCTCAGCTGCATaGAGTCTGGAGAACTGTCTGGAACGGAGGTGTTGGGGAACGTGC	+
Preference number: 5 (lower is better) Translates to: SRKTAGCFHPQCSAA*SLENCLERRCWGTC Trigger: GCACGTTCCCCAACACCTCCGTTCCAGACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAACCAGCTGTCTTCCTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 90 bp	CACTGCTGCCACCAGAGAAAGGGTTGTAGTAGGAAGACAGCTGGTTaGTTCCACCCACAGTGCTCAGCTGCATGGAGTCTGGAGAACTGT	+
Preference number: 5 (lower is better) Translates to: HCCHQRKGCSRKTAG*FHPQCSAAWSLENC Trigger: ACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAACCAGCTGTCTTCCTACTACAACCCTTTCTCTGGTGGCAGCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 90 bp	GGGCTGTCTCCTTCCAGCTTCCCACTCACTCTTAGTCTTGAGGACTaGCCTTCTGATTTTGATGTCCCTGAAGGCACAGTAAGGTTACTG	+
Preference number: 5 (lower is better) Translates to: GLSPSSFPLTLSLED*PSDFDVPEGTVRLL Trigger: CAGTAACCTTACTGTGCCTTCAGGGACATCAAAATCAGAAGGGCAGTCCTCAAGACTAAGAGTGAGTGGGAAGCTGGAAGGAGACAGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 72 bp	TGGGCGCCCGCGAAGGTGCCCGGAGCGGCTGGAGGCTaGAGGAAGGGTCCGGGCGCAGCTCCGGGAGGCGGC	+
Preference number: 6 (lower is better) Translates to: WAPAKVPGAAGG*RKGPGAAPGGG Trigger: GCCGCCTCCCGGAGCTGCGCCCGGACCCTTCCTGCAGCCTCCAGCCGCTCCGGGCACCTTCGCGGGCGCCCA 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 72 bp	AGCGGGCGGTGCGGCGTAGTCGGACAGCCCATAGGGTaGCCTGGAGGTCGGGGGCGCACCAGGCGCGGCGGC	+
Preference number: 6 (lower is better) Translates to: SGRCGVVGQPIG*PGGRGRTRRGG Trigger: GCCGCCGCGCCTGGTGCGCCCCCGACCTCCAGGGCACCCTATGGGCTGTCCGACTACGCCGCACCGCCCGCT 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 72 bp	GCGGTGCGGCGTAGTCGGACAGCCCATAGGGTGCCCTaGAGGTCGGGGGCGCACCAGGCGCGGCGGCGGGCT	+
Preference number: 6 (lower is better) Translates to: AVRRSRTAHRVP*RSGAHQARRRA Trigger: AGCCCGCCGCCGCGCCTGGTGCGCCCCCGACCTCCAGGGCACCCTATGGGCTGTCCGACTACGCCGCACCGC 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CAA 72 bp	TCGGCGACCGAGGGCTGGTGCAGAGCGGCAGCGGCTTaGGGAGAGCGGGGCTGGCCACGGCACTTCGGAGAG	+
Preference number: 6 (lower is better) Translates to: SATEGWCRAAAA*GERGWPRHFGE Trigger: CTCTCCGAAGTGCCGTGGCCAGCCCCGCTCTCCCAAAGCCGCTGCCGCTCTGCACCAGCCCTCGGTCGCCGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163089.2
CDS CAA 90 bp	GTCGGGGGCGCACCAGGCGCGGCGGCGGGCTGCGAGTATACGAAGTaGTCGCCGCAATACAGGGCCATGTCGGCGACCGAGGGCTGGTGC	+
Preference number: 6 (lower is better) Translates to: VGGAPGAAAGCEYTK*SPQYRAMSATEGWC Trigger: GCACCAGCCCTCGGTCGCCGACATGGCCCTGTATTGCGGCGACAACTTCGTATACTCGCAGCCCGCCGCCGCGCCTGGTGCGCCCCCGAC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000163089.2
CDS GCA 72 bp	CTGGAGGTCGGGGGCGCACCAGGCGCGGCGGCGGGCTaGGAGTATACGAAGTTGTCGCCGCAATACAGGGCC	+
Preference number: 6 (lower is better) Translates to: LEVGGAPGAAAG*EYTKLSPQYRA Trigger: GGCCCTGTATTGCGGCGACAACTTCGTATACTCGCAGCCCGCCGCCGCGCCTGGTGCGCCCCCGACCTCCAG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 72 bp	GAGCCACAGGTAGGGGTTGGCGGCTGCAGCGGGCGGTaGGGCGTAGTCGGACAGCCCATAGGGTGCCCTGGA	+
Preference number: 6 (lower is better) Translates to: EPQVGVGGCSGR*GVVGQPIGCPG Trigger: TCCAGGGCACCCTATGGGCTGTCCGACTACGCCGCACCGCCCGCTGCAGCCGCCAACCCCTACCTGTGGCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 72 bp	CCGCAATACAGGGCCATGTCGGCGACCGAGGGCTGGTaGAGAGCGGCAGCGGCTTTGGGAGAGCGGGGCTGG	+
Preference number: 6 (lower is better) Translates to: PQYRAMSATEGW*RAAAALGERGW Trigger: CCAGCCCCGCTCTCCCAAAGCCGCTGCCGCTCTGCACCAGCCCTCGGTCGCCGACATGGCCCTGTATTGCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163089.2
CDS CCA 72 bp	TCGCCGCAATACAGGGCCATGTCGGCGACCGAGGGCTaGTGCAGAGCGGCAGCGGCTTTGGGAGAGCGGGGC	+
Preference number: 6 (lower is better) Translates to: SPQYRAMSATEG*CRAAAALGERG Trigger: GCCCCGCTCTCCCAAAGCCGCTGCCGCTCTGCACCAGCCCTCGGTCGCCGACATGGCCCTGTATTGCGGCGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163089.2
CDS GCA 72 bp	TGGAGGGCAGCTGGGTCCCTCCTAGGTGGCGACGGCTaGCTGGGAGGGTTCGCTGGTTGCCCATGCTGCTGC	+
Preference number: 6 (lower is better) Translates to: WRAAGSLLGGDG*LGGFAGCPCCC Trigger: GCAGCAGCATGGGCAACCAGCGAACCCTCCCAGGCAGCCGTCGCCACCTAGGAGGGACCCAGCTGCCCTCCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CAA 72 bp	GCACCAGGCGCGGCGGCGGGCTGCGAGTATACGAAGTaGTCGCCGCAATACAGGGCCATGTCGGCGACCGAG	+
Preference number: 6 (lower is better) Translates to: APGAAAGCEYTK*SPQYRAMSATE Trigger: CTCGGTCGCCGACATGGCCCTGTATTGCGGCGACAACTTCGTATACTCGCAGCCCGCCGCCGCGCCTGGTGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163089.2
CDS GCA 72 bp	CTGGAGAACTGTCTGGAACGGAGGTGTTGGGGAACGTaGTGGAGGGCAGCTGGGTCCCTCCTAGGTGGCGAC	+
Preference number: 6 (lower is better) Translates to: LENCLERRCWGT*WRAAGSLLGGD Trigger: GTCGCCACCTAGGAGGGACCCAGCTGCCCTCCAGCACGTTCCCCAACACCTCCGTTCCAGACAGTTCTCCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 72 bp	CCTCCTAGGTGGCGACGGCTGCCTGGGAGGGTTCGCTaGTTGCCCATGCTGCTGCTGGAGTTGACATTTAAG	+
Preference number: 6 (lower is better) Translates to: PPRWRRLPGRVR*LPMLLLELTFK Trigger: CTTAAATGTCAACTCCAGCAGCAGCATGGGCAACCAGCGAACCCTCCCAGGCAGCCGTCGCCACCTAGGAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 72 bp	GCATGGAGTCTGGAGAACTGTCTGGAACGGAGGTGTTaGGGAACGTGCTGGAGGGCAGCTGGGTCCCTCCTA	+
Preference number: 6 (lower is better) Translates to: AWSLENCLERRC*GTCWRAAGSLL Trigger: TAGGAGGGACCCAGCTGCCCTCCAGCACGTTCCCCAACACCTCCGTTCCAGACAGTTCTCCAGACTCCATGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CAA 72 bp	CCTAGGTGGCGACGGCTGCCTGGGAGGGTTCGCTGGTaGCCCATGCTGCTGCTGGAGTTGACATTTAAGGTG	+
Preference number: 6 (lower is better) Translates to: PRWRRLPGRVRW*PMLLLELTFKV Trigger: CACCTTAAATGTCAACTCCAGCAGCAGCATGGGCAACCAGCGAACCCTCCCAGGCAGCCGTCGCCACCTAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CAA 90 bp	TGGGTCCCTCCTAGGTGGCGACGGCTGCCTGGGAGGGTTCGCTGGTaGCCCATGCTGCTGCTGGAGTTGACATTTAAGGTGTTAAAGGTG	+
Preference number: 6 (lower is better) Translates to: WVPPRWRRLPGRVRW*PMLLLELTFKVLKV Trigger: CACCTTTAACACCTTAAATGTCAACTCCAGCAGCAGCATGGGCAACCAGCGAACCCTCCCAGGCAGCCGTCGCCACCTAGGAGGGACCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 72 bp	GAAGACAGCTGGTTGCTTCCACCCACAGTGCTCAGCTaGATGGAGTCTGGAGAACTGTCTGGAACGGAGGTG	+
Preference number: 6 (lower is better) Translates to: EDSWLLPPTVLS*MESGELSGTEV Trigger: CACCTCCGTTCCAGACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAACCAGCTGTCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 72 bp	GTTGCTTCCACCCACAGTGCTCAGCTGCATGGAGTCTaGAGAACTGTCTGGAACGGAGGTGTTGGGGAACGT	+
Preference number: 6 (lower is better) Translates to: VASTHSAQLHGV*RTVWNGGVGER Trigger: ACGTTCCCCAACACCTCCGTTCCAGACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CCA 72 bp	ACAGCTGGTTGCTTCCACCCACAGTGCTCAGCTGCATaGAGTCTGGAGAACTGTCTGGAACGGAGGTGTTGG	+
Preference number: 6 (lower is better) Translates to: TAGCFHPQCSAA*SLENCLERRCW Trigger: CCAACACCTCCGTTCCAGACAGTTCTCCAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAACCAGCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CAA 90 bp	CGGCTGCCTGGGAGGGTTCGCTGGTTGCCCATGCTGCTGCTGGAGTaGACATTTAAGGTGTTAAAGGTGCTGAGGAAAGTGTTGAGACAC	+
Preference number: 6 (lower is better) Translates to: RLPGRVRWLPMLLLE*TFKVLKVLRKVLRH Trigger: GTGTCTCAACACTTTCCTCAGCACCTTTAACACCTTAAATGTCAACTCCAGCAGCAGCATGGGCAACCAGCGAACCCTCCCAGGCAGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS GCA 72 bp	CACCAGAGAAAGGGTTGTAGTAGGAAGACAGCTGGTTaGTTCCACCCACAGTGCTCAGCTGCATGGAGTCTG	+
Preference number: 6 (lower is better) Translates to: HQRKGCSRKTAG*FHPQCSAAWSL Trigger: CAGACTCCATGCAGCTGAGCACTGTGGGTGGAAGCAACCAGCTGTCTTCCTACTACAACCCTTTCTCTGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2
CDS CAA 72 bp	GGGAGGGTTCGCTGGTTGCCCATGCTGCTGCTGGAGTaGACATTTAAGGTGTTAAAGGTGCTGAGGAAAGTG	+
Preference number: 6 (lower is better) Translates to: GRVRWLPMLLLE*TFKVLKVLRKV Trigger: CACTTTCCTCAGCACCTTTAACACCTTAAATGTCAACTCCAGCAGCAGCATGGGCAACCAGCGAACCCTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000069634.6 ENSMUST00000163089.2

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