Pregenerated sensors for FOXI1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047861Ensembl transcript IDs: ENSMUST00000060271.3
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATACAAGAAGCTGGTGGTTATGAGATTTTGTGGGTGGGCAGTACTTaGGTGAGGGTTCAGGGGTACATACCACTTGTCTCACTGACCTCT | + |
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Preference number: 1 (lower is better) Translates to: IQEAGGYEILWVGST*VRVQGYIPLVSLTS Trigger: AGAGGTCAGTGAGACAAGTGGTATGTACCCCTGAACCCTCACCCAAGTACTGCCCACCCACAAAATCTCATAACCACCAGCTTCTTGTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR TCA 90 bp | GGACATGCTTATTCTGCTCATTTGACCTTGTTTCTCTCGGAAGGCTaGGCCACCACATCTTCACTGATCCATGACACATACATACAAGAA | + |
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Preference number: 1 (lower is better) Translates to: GHAYSAHLTLFLSEG*ATTSSLIHDTYIQE Trigger: TTCTTGTATGTATGTGTCATGGATCAGTGAAGATGTGGTGGCTCAGCCTTCCGAGAGAAACAAGGTCAAATGAGCAGAATAAGCATGTCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR CCA 90 bp | CTCACAAAAGAGGAGCGAGCAGTGCCAGAGGCTGTGCTCACAGCCACTCTGTTCGGTTATGAGATTTTGTaGGTGGGCAGTACTTGGGTG | + |
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Preference number: 2 (lower is better) Translates to: LTKEERAVPEAVLTATLFGYEIL*VGSTWV Trigger: CACCCAAGTACTGCCCACCCACAAAATCTCATAACC...GAACAGAGTGGCTGTGAGCACAGCCTCTGGCACTGCTCGCTCCTCTTTTGTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTTTATCCAGCCTTCGAAGGTCACCCAGCCTCTGCTTTAATGCCTTTCTCGTTGAGGGTCTGGTCTaGAGGACCACCTTTGCTTTT | + |
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Preference number: 2 (lower is better) Translates to: FPLSSLRRSPSLCFNAFLVEGLV*RTTFAF Trigger: AAAAGCAAAGGTGGTCCTTCAGACCAGACCCTCAAC...GAGAAAGGCATTAAAGCAGAGGCTGGGTGACCTTCGAAGGCTGGATAAAGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR TCA 90 bp | ACTAGAGGCATGGTTCTACAGGGGTATTTGGGCTGGACTCCTCCTCCTGAGTGGTTGGAGAGATTCATGTaGACCTCAAAGGATGATGGT | + |
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Preference number: 2 (lower is better) Translates to: TRGMVLQGYLGWTPPPEWLERFM*TSKDDG Trigger: ACCATCATCCTTTGAGGTTCACATGAATCTCTCCAA...CCACTCAGGAGGAGGAGTCCAGCCCAAATACCCCTGTAGAACCATGCCTCTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR CAA 90 bp | TCTCTGCTCAAGTTCTGTGGAAGGCTAGTGAAGTGTTACCCTGTATaGCACCTACTAGAGGCATGGTTCTACAGGGGTATTTGGGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: SLLKFCGRLVKCYPV*HLLEAWFYRGIWAG Trigger: TCCAGCCCAAATACCCCTGTAGAACCATGCCTCTAGTAGGTGCAATACAGGGTAACACTTCACTAGCCTTCCACAGAACTTGAGCAGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR TCA 90 bp | TCCATGACACATACATACAAGAAGCTGGTGGTTATGAGATTTTGTGGGTGGGCATACCACTTGTCTCACTaGCCTCTGTCTCTGCTCAAG | + |
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Preference number: 2 (lower is better) Translates to: SMTHTYKKLVVMRFCGWAYHLSH*PLSLLK Trigger: CTTGAGCAGAGACAGAGGTCAGTGAGACAAGTGGTA...TGCCCACCCACAAAATCTCATAACCACCAGCTTCTTGTATGTATGTGTCATGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR GCA 90 bp | TCTTCACTGATCCATGACACATACATACAAGAAGCTGGTGGTTATGAGATTTTGCCAAGCTTCCTGGGGTaGTATCTGGGAAGGACAAAC | + |
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Preference number: 2 (lower is better) Translates to: SSLIHDTYIQEAGGYEILPSFLG*YLGRTN Trigger: GTTTGTCCTTCCCAGATAGCACCCCAGGAAGCTTGG...CAAAATCTCATAACCACCAGCTTCTTGTATGTATGTGTCATGGATCAGTGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR GCA 90 bp | TCTTCACTGATCCATGACACATACATACAAGAAGCTGGTGGTTATGAGATTTTGACTGACCTCTGTCTCTaGTCAAGTTCTGTGGAAGGC | + |
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Preference number: 2 (lower is better) Translates to: SSLIHDTYIQEAGGYEILTDLCL*SSSVEG Trigger: GCCTTCCACAGAACTTGAGCAGAGACAGAGGTCAGT...CAAAATCTCATAACCACCAGCTTCTTGTATGTATGTGTCATGGATCAGTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR TCA 72 bp | GGTTCTACAGGGGTATTTGGGCTGGACTCCTCCTCCTaGGTGGTAGGTAACAGAATGCCTGTAGGTAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: GSTGVFGLDSSS*VVGNRMPVGKL Trigger: CAGCTTACCTACAGGCATTCTGTTACCTACCACTCAGGAGGAGGAGTCCAGCCCAAATACCCCTGTAGAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR CCA 72 bp | GCTGGTGGTTATGAGATTTTGTGGGTGGGCAGTACTTaGGTGAGGGTTCAGGGGTACATACCACTTGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: AGGYEILWVGST*VRVQGYIPLVS Trigger: TGAGACAAGTGGTATGTACCCCTGAACCCTCACCCAAGTACTGCCCACCCACAAAATCTCATAACCACCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR CCA 72 bp | ACATACATACAAGAAGCTGGTGGTTATGAGATTTTGTaGGTGGGCAGTACTTGGGTGAGGGTTCAGGGGTAC | + |
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Preference number: 3 (lower is better) Translates to: TYIQEAGGYEIL*VGSTWVRVQGY Trigger: GTACCCCTGAACCCTCACCCAAGTACTGCCCACCCACAAAATCTCATAACCACCAGCTTCTTGTATGTATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR TCA 72 bp | TGTTTCTCTCGGAAGGCTGAGCCACCACATCTTCACTaGTCCATGACACATACATACAAGAAGCTGGTGGTT | + |
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Preference number: 3 (lower is better) Translates to: CFSRKAEPPHLH*SMTHTYKKLVV Trigger: AACCACCAGCTTCTTGTATGTATGTGTCATGGATCAGTGAAGATGTGGTGGCTCAGCCTTCCGAGAGAAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR CAA 90 bp | ATGGTACACAGTATGACTATGTCATTAAAAAGCTCAAACCAGGAACCAGCACCATCTGAAGGACCACCTTaGCTTTTCCCCCAGACAGCT | + |
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Preference number: 3 (lower is better) Translates to: MVHSMTMSLKSSNQEPAPSEGPP*LFPQTA Trigger: AGCTGTCTGGGGGAAAAGCAAAGGTGGTCCTTCAGA...TGGTGCTGGTTCCTGGTTTGAGCTTTTTAATGACATAGTCATACTGTGTACCAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR TCA 72 bp | TATTCTGCTCATTTGACCTTGTTTCTCTCGGAAGGCTaGGCCACCACATCTTCACTGATCCATGACACATAC | + |
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Preference number: 3 (lower is better) Translates to: YSAHLTLFLSEG*ATTSSLIHDTY Trigger: GTATGTGTCATGGATCAGTGAAGATGTGGTGGCTCAGCCTTCCGAGAGAAACAAGGTCAAATGAGCAGAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| 3UTR-3UTR CAA 90 bp | TGTGCTGTGATGACATCACAACCAAATAAAGTAACTCACAAAAGAGGAGCGAGCAAACTGACAACTTTCTaGGGCCTTTGTTTTATGATC | + |
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Preference number: 3 (lower is better) Translates to: CAVMTSQPNKVTHKRGASKLTTF*GLCFMI Trigger: GATCATAAAACAAAGGCCCAAGAAAGTTGTCAGTTT...GCTCGCTCCTCTTTTGTGAGTTACTTTATTTGGTTGTGATGTCATCACAGCACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | CTCACAAAAGAGGAGCGAGCAGTGCCAGAGGCTGTGCTCACAGCCACTCTGTTCGCCAGCCCAGGTCGCTaGGCAGTAGCTGCCTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LTKEERAVPEAVLTATLFASPGR*AVAASA Trigger: TGCAGAGGCAGCTACTGCCCAGCGACCTGGGCTGGC...GAACAGAGTGGCTGTGAGCACAGCCTCTGGCACTGCTCGCTCCTCTTTTGTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | CTCACAAAAGAGGAGCGAGCAGTGCCAGAGGCTGTGCTCACAGCCACTCTGTTCAGGCAGGTAGGGTGGTaGGGTCATGGCCGGCCCATT | + |
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Preference number: 4 (lower is better) Translates to: LTKEERAVPEAVLTATLFRQVGW*GHGRPI Trigger: AATGGGCCGGCCATGACCCCACCACCCTACCTGCCT...GAACAGAGTGGCTGTGAGCACAGCCTCTGGCACTGCTCGCTCCTCTTTTGTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | ACTAGAGGCATGGTTCTACAGGGGTATTTGGGCTGGACTCCTCCTCCTGAGTGGCCTCCTGAGGCTCTGTaGGCTTGGGGCTGCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: TRGMVLQGYLGWTPPPEWPPEAL*AWGCWP Trigger: TGGCCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGG...CCACTCAGGAGGAGGAGTCCAGCCCAAATACCCCTGTAGAACCATGCCTCTAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | CTAGAGGCATGGTTCTACAGGGGTATTTGGGCTGGACTCCTCCTCCTGAGTGGTCCGATGCTGGGGAACTaGGGACTGCACCGAGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LEAWFYRGIWAGLLLLSGPMLGN*GLHRGG Trigger: ACCACCTCGGTGCAGTCCCCAGTTCCCCAGCATCGG...ACCACTCAGGAGGAGGAGTCCAGCCCAAATACCCCTGTAGAACCATGCCTCTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | ATACAAGAAGCTGGTGGTTATGAGATTTTGTGGGTGGGCAGTACTTGGGTGAGGGCCAGGCAGGTAGGGTaGTGGGGTCATGGCCGGCCC | + |
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Preference number: 4 (lower is better) Translates to: IQEAGGYEILWVGSTWVRARQVG*WGHGRP Trigger: GGGCCGGCCATGACCCCACCACCCTACCTGCCTGGC...CCTCACCCAAGTACTGCCCACCCACAAAATCTCATAACCACCAGCTTCTTGTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | GTACATACCACTTGTCTCACTGACCTCTGTCTCTGCTCAAGTTCTGTGGAAGGCATCTCCGGGGGCTCCTaGCCGATGCTGGGGAACTGG | + |
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Preference number: 4 (lower is better) Translates to: VHTTCLTDLCLCSSSVEGISGGS*PMLGNW Trigger: CCAGTTCCCCAGCATCGGCCAGGAGCCCCCGGAGAT...GCCTTCCACAGAACTTGAGCAGAGACAGAGGTCAGTGAGACAAGTGGTATGTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | TTGGGTGAGGGTTCAGGGGTACATACCACTTGTCTCACTGACCTCTGTCTCTGCGGAGGACCGCTTCTCTaGGGAGCTGGTGGTAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: LGEGSGVHTTCLTDLCLCGGPLL*GAGGSV Trigger: GACACTACCACCAGCTCCCCAGAGAAGCGGTCCTCC...GCAGAGACAGAGGTCAGTGAGACAAGTGGTATGTACCCCTGAACCCTCACCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR TCA 90 bp | ACTAGAGGCATGGTTCTACAGGGGTATTTGGGCTGGACTCCTCCTCCTGAGTGGGGACTGGGCATGCCCTaGGGGTGGAAGAAATTCTCA | + |
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Preference number: 4 (lower is better) Translates to: TRGMVLQGYLGWTPPPEWGLGMP*GWKKFS Trigger: TGAGAATTTCTTCCACCCTCAGGGCATGCCCAGTCC...CCACTCAGGAGGAGGAGTCCAGCCCAAATACCCCTGTAGAACCATGCCTCTAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR GCA 90 bp | GTACATACCACTTGTCTCACTGACCTCTGTCTCTGCTCAAGTTCTGTGGAAGGCTGGGGAACTGGGGACTaGACCGAGGTGGTGAAGGCG | + |
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Preference number: 4 (lower is better) Translates to: VHTTCLTDLCLCSSSVEGWGTGD*TEVVKA Trigger: CGCCTTCACCACCTCGGTGCAGTCCCCAGTTCCCCA...GCCTTCCACAGAACTTGAGCAGAGACAGAGGTCAGTGAGACAAGTGGTATGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR GCA 90 bp | ACTAGAGGCATGGTTCTACAGGGGTATTTGGGCTGGACTCCTCCTCCTGAGTGGGTAGCTGCCTCTGCATaGCATAGGCCTGGGGTAGAA | + |
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Preference number: 4 (lower is better) Translates to: TRGMVLQGYLGWTPPPEWVAASA*HRPGVE Trigger: TTCTACCCCAGGCCTATGGCATGCAGAGGCAGCTAC...CCACTCAGGAGGAGGAGTCCAGCCCAAATACCCCTGTAGAACCATGCCTCTAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR GCA 90 bp | GTACATACCACTTGTCTCACTGACCTCTGTCTCTGCTCAAGTTCTGTGGAAGGCCTGTGGGCTTGGGGCTaGTGGCCAGGAGACCGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VHTTCLTDLCLCSSSVEGLWAWG*WPGDRS Trigger: AGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCACAG...GCCTTCCACAGAACTTGAGCAGAGACAGAGGTCAGTGAGACAAGTGGTATGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | AAAGCTCAAACCAGGAACCAGCACCATAGTAAGTGCTCAACCAATGGCCACATCGCTCCTGGCCGATGCTaGGGAACTGGGGACTGCACC | + |
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Preference number: 4 (lower is better) Translates to: KAQTRNQHHSKCSTNGHIAPGRC*GTGDCT Trigger: GGTGCAGTCCCCAGTTCCCCAGCATCGGCCAGGAGC...GATGTGGCCATTGGTTGAGCACTTACTATGGTGCTGGTTCCTGGTTTGAGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | AAAGCTCAAACCAGGAACCAGCACCATAGTAAGTGCTCAACCAATGGCCACATCCTTCCTGAGAGGGGATaGGCAGCCAGCCCAGGTCGC | + |
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Preference number: 4 (lower is better) Translates to: KAQTRNQHHSKCSTNGHILPERG*AASPGR Trigger: GCGACCTGGGCTGGCTGCCCATCCCCTCTCAGGAAG...GATGTGGCCATTGGTTGAGCACTTACTATGGTGCTGGTTCCTGGTTTGAGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR TCA 90 bp | ATACAAGAAGCTGGTGGTTATGAGATTTTGTGGGTGGGCAGTACTTGGGTGAGGTCATGGCCGGCCCATTaGGCCAGAGGTAGGGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: IQEAGGYEILWVGSTWVRSWPAH*ARGRGW Trigger: CCAACCCCTACCTCTGGCTCAATGGGCCGGCCATGA...CCTCACCCAAGTACTGCCCACCCACAAAATCTCATAACCACCAGCTTCTTGTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | TTCCCTTTATCCAGCCTTCGAAGGTCACCCAGCCTCTGCTTTAATGCCTTTCTCGGTAGGGGTTGGGAGTaGTCCCGTATTCGCCACCAC | + |
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Preference number: 4 (lower is better) Translates to: FPLSSLRRSPSLCFNAFLGRGWE*SRIRHH Trigger: GTGGTGGCGAATACGGGACCACTCCCAACCCCTACC...GAGAAAGGCATTAAAGCAGAGGCTGGGTGACCTTCGAAGGCTGGATAAAGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | AAAGCTCAAACCAGGAACCAGCACCATAGTAAGTGCTCAACCAATGGCCACATCGCCAGAGGTAGGGGTTaGGAGTGGTCCCGTATTCGC | + |
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Preference number: 4 (lower is better) Translates to: KAQTRNQHHSKCSTNGHIARGRG*EWSRIR Trigger: GCGAATACGGGACCACTCCCAACCCCTACCTCTGGC...GATGTGGCCATTGGTTGAGCACTTACTATGGTGCTGGTTCCTGGTTTGAGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | TCCATGACACATACATACAAGAAGCTGGTGGTTATGAGATTTTGTGGGTGGGCATGGGCTTGGGGCTGCTaGCCAGGAGACCGTTCTCCG | + |
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Preference number: 4 (lower is better) Translates to: SMTHTYKKLVVMRFCGWAWAWGC*PGDRSP Trigger: CGGAGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCA...TGCCCACCCACAAAATCTCATAACCACCAGCTTCTTGTATGTATGTGTCATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR TCA 90 bp | TTCCCTTTATCCAGCCTTCGAAGGTCACCCAGCCTCTGCTTTAATGCCTTTCTCCTTGTCAATAGGCTCTaGGCTCAGTCCTGGTGTGGC | + |
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Preference number: 4 (lower is better) Translates to: FPLSSLRRSPSLCFNAFLLVNRL*AQSWCG Trigger: GCCACACCAGGACTGAGCTCAGAGCCTATTGACAAG...GAGAAAGGCATTAAAGCAGAGGCTGGGTGACCTTCGAAGGCTGGATAAAGGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR GCA 90 bp | GTAACTCACAAAAGAGGAGCGAGCAGTGCCAGAGGCTGTGCTCACAGCCACTCTTCTGCCAGCCAGCCTTaGTCTTGTTGTAAAAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: VTHKRGASSARGCAHSHSSASQP*SCCKRE Trigger: TTCCCTTTTACAACAAGAGCAAGGCTGGCTGGCAGA...AGAGTGGCTGTGAGCACAGCCTCTGGCACTGCTCGCTCCTCTTTTGTGAGTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR GCA 90 bp | CTAGAGGCATGGTTCTACAGGGGTATTTGGGCTGGACTCCTCCTCCTGAGTGGTTGTCCCACTCACATATaGTGTCATGGTGGAGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LEAWFYRGIWAGLLLLSGCPTHI*CHGGEE Trigger: TTCCTCTCCACCATGACAGCATATGTGAGTGGGACA...ACCACTCAGGAGGAGGAGTCCAGCCCAAATACCCCTGTAGAACCATGCCTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR TCA 90 bp | TGTGCTGTGATGACATCACAACCAAATAAAGTAACTCACAAAAGAGGAGCGAGCGGCGTACCAGCTTCATaGGCTCTTCCTGAGAGGGGA | + |
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Preference number: 4 (lower is better) Translates to: CAVMTSQPNKVTHKRGASGVPAS*ALPERG Trigger: TCCCCTCTCAGGAAGAGCTCATGAAGCTGGTACGCC...GCTCGCTCCTCTTTTGTGAGTTACTTTATTTGGTTGTGATGTCATCACAGCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | TCTTCACTGATCCATGACACATACATACAAGAAGCTGGTGGTTATGAGATTTTGTTGGGCGCTGAGGACTaGGCATGCCCTGAGGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: SSLIHDTYIQEAGGYEILLGAED*ACPEGG Trigger: TCCACCCTCAGGGCATGCCCAGTCCTCAGCGCCCAA...CAAAATCTCATAACCACCAGCTTCTTGTATGTATGTGTCATGGATCAGTGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR GCA 90 bp | GTGTTGAATTCTGAGAGCATCACTAGAAGCCAGTGGGGAGTGTGCGTGCATTTGAAATTCAGTGAGTTCTaGCCCATCTTGTCAATAGGC | + |
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Preference number: 4 (lower is better) Translates to: VLNSESITRSQWGVCVHLKFSEF*PILSIG Trigger: GCCTATTGACAAGATGGGGCAGAACTCACTGAATTT...CAAATGCACGCACACTCCCCACTGGCTTCTAGTGATGCTCTCAGAATTCAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CCA 90 bp | AAAGCTCAAACCAGGAACCAGCACCATAGTAAGTGCTCAACCAATGGCCACATCCCAATGAGCTGGTGCTaGAGGATGAATCTGATTTTC | + |
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Preference number: 4 (lower is better) Translates to: KAQTRNQHHSKCSTNGHIPMSWC*RMNLIF Trigger: GAAAATCAGATTCATCCTCCAGCACCAGCTCATTGG...GATGTGGCCATTGGTTGAGCACTTACTATGGTGCTGGTTCCTGGTTTGAGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR GCA 90 bp | AAAGCTCAAACCAGGAACCAGCACCATAGTAAGTGCTCAACCAATGGCCACATCTTCTCTTTCTCTTCCTaGGAAAGTTTCCGTTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: KAQTRNQHHSKCSTNGHIFSFSS*ESFRCQ Trigger: TTGACAACGGAAACTTTCGCAGGAAGAGAAAGAGAA...GATGTGGCCATTGGTTGAGCACTTACTATGGTGCTGGTTCCTGGTTTGAGCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS GCA 90 bp | GCGAGGCGGTGTCTAAGACCTCCTGAGGCTCTGTGGGCTTGGGGCTaGTGGCCAGGAGACCGTTCTCCGTTTTCTCTGAAGCCAATGAGC | + |
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Preference number: 5 (lower is better) Translates to: ARRCLRPPEALWAWG*WPGDRSPFSLKPMS Trigger: GCTCATTGGCTTCAGAGAAAACGGAGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGGTCTTAGACACCGCCTCGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 90 bp | TGTCTGGCGAGGCGGTGTCTAAGACCTCCTGAGGCTCTGTGGGCTTaGGGCTGCTGGCCAGGAGACCGTTCTCCGTTTTCTCTGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: CLARRCLRPPEALWA*GCWPGDRSPFSLKP Trigger: TGGCTTCAGAGAAAACGGAGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGGTCTTAGACACCGCCTCGCCAGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 90 bp | AGGCGGTGTCTAAGACCTCCTGAGGCTCTGTGGGCTTGGGGCTGCTaGCCAGGAGACCGTTCTCCGTTTTCTCTGAAGCCAATGAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: RRCLRPPEALWAWGC*PGDRSPFSLKPMSW Trigger: CCAGCTCATTGGCTTCAGAGAAAACGGAGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGGTCTTAGACACCGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS TCA 90 bp | GAGGCGCTGGTCGGGCGCACCGTGGATTGCCATGGCAATGAGGGCTaGATAGGAATATGGTGGGCGTACCAGCTTCATGAGCTCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: EALVGRTVDCHGNEG*IGIWWAYQLHELFL Trigger: CAGGAAGAGCTCATGAAGCTGGTACGCCCACCATATTCCTATTCAGCCCTCATTGCCATGGCAATCCACGGTGCGCCCGACCAGCGCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CAA 90 bp | TTGGGTGAGGGTTCAGGGGTACATACCACTTGTCTCACTGACCTCTGTCTCTGCATGGTGGAGAGGAAGTaGTTGAGACACGGGGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: LGEGSGVHTTCLTDLCLCMVERK*LRHGVP Trigger: GGGCACCCCGTGTCTCAACAACTTCCTCTCCACCAT...GCAGAGACAGAGGTCAGTGAGACAAGTGGTATGTACCCCTGAACCCTCACCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CAA 90 bp | GTACATACCACTTGTCTCACTGACCTCTGTCTCTGCTCAAGTTCTGTGGAAGGCGTGGAGAGGAAGTTGTaGAGACACGGGGTGCCCGAG | + |
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Preference number: 5 (lower is better) Translates to: VHTTCLTDLCLCSSSVEGVERKL*RHGVPE Trigger: CTCGGGCACCCCGTGTCTCAACAACTTCCTCTCCAC...GCCTTCCACAGAACTTGAGCAGAGACAGAGGTCAGTGAGACAAGTGGTATGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS GCA 90 bp | ATTCGCCACCACCTTCGAAGGAGGTTGGGCGCTGAGGACTGGGCATaGCCTGAGGGTGGAAGAAATTCTCATAGTAAAGATTCATCTCCG | + |
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Preference number: 5 (lower is better) Translates to: IRHHLRRRLGAEDWA*PEGGRNSHSKDSSP Trigger: CGGAGATGAATCTTTACTATGAGAATTTCTTCCACCCTCAGGGCATGCCCAGTCCTCAGCGCCCAACCTCCTTCGAAGGTGGTGGCGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 90 bp | TCCCGTATTCGCCACCACCTTCGAAGGAGGTTGGGCGCTGAGGACTaGGCATGCCCTGAGGGTGGAAGAAATTCTCATAGTAAAGATTCA | + |
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Preference number: 5 (lower is better) Translates to: SRIRHHLRRRLGAED*ACPEGGRNSHSKDS Trigger: TGAATCTTTACTATGAGAATTTCTTCCACCCTCAGGGCATGCCCAGTCCTCAGCGCCCAACCTCCTTCGAAGGTGGTGGCGAATACGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CAA 90 bp | TTGGGTGAGGGTTCAGGGGTACATACCACTTGTCTCACTGACCTCTGTCTCTGCGAGTTCTGCCCCATCTaGTCAATAGGCTCTGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: LGEGSGVHTTCLTDLCLCEFCPI*SIGSEL Trigger: GAGCTCAGAGCCTATTGACAAGATGGGGCAGAACTC...GCAGAGACAGAGGTCAGTGAGACAAGTGGTATGTACCCCTGAACCCTCACCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CAA 90 bp | AAAGCTCAAACCAGGAACCAGCACCATAGTAAGTGCTCAACCAATGGCCACATCTTGGTGGCTACTGGGTaGGCCCATTCACCCCCATTC | + |
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Preference number: 5 (lower is better) Translates to: KAQTRNQHHSKCSTNGHILVATG*AHSPPF Trigger: GAATGGGGGTGAATGGGCCAACCCAGTAGCCACCAA...GATGTGGCCATTGGTTGAGCACTTACTATGGTGCTGGTTCCTGGTTTGAGCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 90 bp | TGCTGGCCAGGAGACCGTTCTCCGTTTTCTCTGAAGCCAATGAGCTaGTGCTGGAGGATGAATCTGATTTTCTCTTTCTCTTCCTGCGAA | + |
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Preference number: 5 (lower is better) Translates to: CWPGDRSPFSLKPMS*CWRMNLIFSFSSCE Trigger: TTCGCAGGAAGAGAAAGAGAAAATCAGATTCATCCTCCAGCACCAGCTCATTGGCTTCAGAGAAAACGGAGAACGGTCTCCTGGCCAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS GCA 90 bp | TGGCCAGGAGACCGTTCTCCGTTTTCTCTGAAGCCAATGAGCTGGTaGTGGAGGATGAATCTGATTTTCTCTTTCTCTTCCTGCGAAAGT | + |
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Preference number: 5 (lower is better) Translates to: WPGDRSPFSLKPMSW*WRMNLIFSFSSCES Trigger: ACTTTCGCAGGAAGAGAAAGAGAAAATCAGATTCATCCTCCAGCACCAGCTCATTGGCTTCAGAGAAAACGGAGAACGGTCTCCTGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS-3UTR CAA 90 bp | TTCCCTTTATCCAGCCTTCGAAGGTCACCCAGCCTCTGCTTTAATGCCTTTCTCCTGCGAAAGTTTCCGTaGTCAAACATCTTCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: FPLSSLRRSPSLCFNAFLLRKFP*SNIFSQ Trigger: CTGTGAGAAGATGTTTGACAACGGAAACTTTCGCAG...GAGAAAGGCATTAAAGCAGAGGCTGGGTGACCTTCGAAGGCTGGATAAAGGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | TTCATCTCCGGGGGCTCCTGGCCGATGCTGGGGAACTaGGGACTGCACCGAGGTGGTGAAGGCGCTGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: FISGGSWPMLGN*GLHRGGEGAGR Trigger: CCTCCCAGCGCCTTCACCACCTCGGTGCAGTCCCCAGTTCCCCAGCATCGGCCAGGAGCCCCCGGAGATGAA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | CTGGCGAGGCGGTGTCTAAGACCTCCTGAGGCTCTGTaGGCTTGGGGCTGCTGGCCAGGAGACCGTTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: LARRCLRPPEAL*AWGCWPGDRSP Trigger: CGGAGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGGTCTTAGACACCGCCTCGCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | AAAGGGGCTGGCGTTAGTGCCAGGCAGGTAGGGTGGTaGGGTCATGGCCGGCCCATTGAGCCAGAGGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: KGAGVSARQVGW*GHGRPIEPEVG Trigger: CCCTACCTCTGGCTCAATGGGCCGGCCATGACCCCACCACCCTACCTGCCTGGCACTAACGCCAGCCCCTTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS TCA 72 bp | CAGGCAGGTAGGGTGGTGGGGTCATGGCCGGCCCATTaGGCCAGAGGTAGGGGTTGGGAGTGGTCCCGTATT | + |
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Preference number: 6 (lower is better) Translates to: QAGRVVGSWPAH*ARGRGWEWSRI Trigger: AATACGGGACCACTCCCAACCCCTACCTCTGGCTCAATGGGCCGGCCATGACCCCACCACCCTACCTGCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | AGTGGTCCCGTATTCGCCACCACCTTCGAAGGAGGTTaGGCGCTGAGGACTGGGCATGCCCTGAGGGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: SGPVFATTFEGG*ALRTGHALRVE Trigger: TTCCACCCTCAGGGCATGCCCAGTCCTCAGCGCCCAACCTCCTTCGAAGGTGGTGGCGAATACGGGACCACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | CTAAGACCTCCTGAGGCTCTGTGGGCTTGGGGCTGCTaGCCAGGAGACCGTTCTCCGTTTTCTCTGAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: LRPPEALWAWGC*PGDRSPFSLKP Trigger: TGGCTTCAGAGAAAACGGAGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGGTCTTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | GACGGAGCCTCCATAGCCCAGAGCATTGGTGGCTACTaGGTTGGCCCATTCACCCCCATTCCCATGGCTACT | + |
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Preference number: 6 (lower is better) Translates to: DGASIAQSIGGY*VGPFTPIPMAT Trigger: AGTAGCCATGGGAATGGGGGTGAATGGGCCAACCCAGTAGCCACCAATGCTCTGGGCTATGGAGGCTCCGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS GCA 72 bp | TGTCTAAGACCTCCTGAGGCTCTGTGGGCTTGGGGCTaGTGGCCAGGAGACCGTTCTCCGTTTTCTCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: CLRPPEALWAWG*WPGDRSPFSLK Trigger: CTTCAGAGAAAACGGAGAACGGTCTCCTGGCCAGCAGCCCCAAGCCCACAGAGCCTCAGGAGGTCTTAGACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | CGCCACCACCTTCGAAGGAGGTTGGGCGCTGAGGACTaGGCATGCCCTGAGGGTGGAAGAAATTCTCATAGT | + |
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Preference number: 6 (lower is better) Translates to: RHHLRRRLGAED*ACPEGGRNSHS Trigger: ACTATGAGAATTTCTTCCACCCTCAGGGCATGCCCAGTCCTCAGCGCCCAACCTCCTTCGAAGGTGGTGGCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS GCA 72 bp | CACGGAGCGGCTAATAGGGTTTGTCCCACTCACATATaGTGTCATGGTGGAGAGGAAGTTGTTGAGACACGG | + |
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Preference number: 6 (lower is better) Translates to: HGAANRVCPTHI*CHGGEEVVETR Trigger: CCGTGTCTCAACAACTTCCTCTCCACCATGACAGCATATGTGAGTGGGACAAACCCTATTAGCCGCTCCGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS GCA 72 bp | GACCGTTCTCCGTTTTCTCTGAAGCCAATGAGCTGGTaGTGGAGGATGAATCTGATTTTCTCTTTCTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: DRSPFSLKPMSW*WRMNLIFSFSS Trigger: GGAAGAGAAAGAGAAAATCAGATTCATCCTCCAGCACCAGCTCATTGGCTTCAGAGAAAACGGAGAACGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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| CDS CCA 72 bp | GGAGACCGTTCTCCGTTTTCTCTGAAGCCAATGAGCTaGTGCTGGAGGATGAATCTGATTTTCTCTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: GDRSPFSLKPMS*CWRMNLIFSFS Trigger: AGAGAAAGAGAAAATCAGATTCATCCTCCAGCACCAGCTCATTGGCTTCAGAGAAAACGGAGAACGGTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060271.3 |
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