Pregenerated sensors for FOXH1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033837Ensembl transcript IDs: ENSMUST00000037824.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CTAGCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTCCCACAAGGAGGCTCTaGTCCCCCTCCTGGGCACTC | + |
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Preference number: 4 (lower is better) Translates to: LALVHQNDIHGWKREAALPTRRL*SPSWAL Trigger: GAGTGCCCAGGAGGGGGAGCAGAGCCTCCTTGTGGG...AAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGCTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR GCA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGGCCTGGGGCAGGAGCTaGCAGGTCCCTAGGATGGCT | + |
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Preference number: 4 (lower is better) Translates to: LWFIKMIFMGGREKQPFLAWGRS*QVPRMA Trigger: AGCCATCCTAGGGACCTGGCAGCTCCTGCCCCAGGC...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | TGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCGTGGTGGTGGGGGACTaGGTGGCTGATAAGGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: WFIKMIFMGGREKQPFLPVVVGD*VADKAG Trigger: GCCAGCCTTATCAGCCACCCAGTCCCCCACCACCAC...GGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAAACCCTCCCTAGGTGGTaGTGGGGGACTGGGTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: HQNDIHGWKREAALSALETLPRW*WGTGWL Trigger: CAGCCACCCAGTCCCCCACCACCACCTAGGGAGGGT...TTCTAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | GCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGGAAAGGAGCCAGCCTaGGGCAGGAGCTGCCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: ALVHQNDIHGWKREAALSGKEPA*GRSCQV Trigger: GACCTGGCAGCTCCTGCCCCAGGCTGGCTCCTTTCC...AGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR TCA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCACAGGGCAGTGTTCTaGAGGCGCAGCGCCTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LWFIKMIFMGGREKQPFLHRAVF*RRSASA Trigger: TGCTGAGGCGCTGCGCCTTCAGAACACTGCCCTGTG...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR TCA 90 bp | CTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCGACAAGGTGCCTGCCTaGGCTGCAGTGCTCTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: LVHQNDIHGWKREAALSADKVPA*AAVLCP Trigger: TGGACAGAGCACTGCAGCTCAGGCAGGCACCTTGTC...GGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAAGAAACCCTCCCTAGGTaGTGGTGGGGGACTGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HQNDIHGWKREAALSALEETLPR*WWGTGW Trigger: CCACCCAGTCCCCCACCACCACCTAGGGAGGGTTTC...TTCTAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CTAGCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTCTCTGCTCCCCCTCCTaGGCACTCCCCTGGAATCTG | + |
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Preference number: 4 (lower is better) Translates to: LALVHQNDIHGWKREAALLCSPS*ALPWNL Trigger: CAGATTCCAGGGGAGTGCCCAGGAGGGGGAGCAGAG...AAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGCTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR GCA 90 bp | GTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAGCCAGTTTCAGCCTaGGGAAGGGTGCGGCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: VHQNDIHGWKREAALSALEPVSA*GRVRPE Trigger: TTCAGGCCGCACCCTTCCGCAGGCTGAAACTGGCTC...TAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR GCA 90 bp | GCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTCTTGGCCTGGGGCTTTaGAGGGTCCTTGGGCACCTT | + |
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Preference number: 4 (lower is better) Translates to: ALVHQNDIHGWKREAALSLGLGL*RVLGHL Trigger: AAGGTGCCCAAGGACCCTGCAAAGCCCCAGGCCAAG...AGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR GCA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCAGGGAGCCCAGGATaGTGGGGCCATGTGGATTCT | + |
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Preference number: 4 (lower is better) Translates to: LWFIKMIFMGGREKQPFLPGSPG*WGHVDS Trigger: AGAATCCACATGGCCCCAGCATCCTGGGCTCCCTGG...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR GCA 90 bp | CATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAACCCCCTTTGACAAGGTaGCTGCCTGAGCTGCAGTGC | + |
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Preference number: 4 (lower is better) Translates to: HQNDIHGWKREAALSALEPPLTR*LPELQC Trigger: GCACTGCAGCTCAGGCAGGCACCTTGTCAAAGGGGG...TTCTAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | TGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTTGGCGAAAGCTCTGTaGGTGCCCCGGTTCTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: WFIKMIFMGGREKQPFLPLAKAL*VPRFCH Trigger: ATGGCAGAACCGGGGCACCCACAGAGCTTTCGCCAA...GGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCTCCCTAGGTGGTGGTaGGGGACTGGGTGGCTGATA | + |
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Preference number: 4 (lower is better) Translates to: LWFIKMIFMGGREKQPFLLPRWW*GTGWLI Trigger: TATCAGCCACCCAGTCCCCCACCACCACCTAGGGAG...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | TGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCGGGAGCCCAGGATGCTaGGGCCATGTGGATTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: WFIKMIFMGGREKQPFLPGSPGC*GHVDSF Trigger: GAAAGAATCCACATGGCCCCAGCATCCTGGGCTCCC...GGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | TGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCGCAGAAGATGGGCACTaGGGACAAGAGGTGGTCGGT | + |
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Preference number: 4 (lower is better) Translates to: WFIKMIFMGGREKQPFLPAEDGH*GQEVVG Trigger: ACCGACCACCTCTTGTCCCCAGTGCCCATCTTCTGC...GGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR TCA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCGGAAGGGTGCGGCCTaGATTACCAAGGCGATCATG | + |
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Preference number: 4 (lower is better) Translates to: LWFIKMIFMGGREKQPFLRKGAA*ITKAIM Trigger: CATGATCGCCTTGGTAATTCAGGCCGCACCCTTCCG...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR GCA 90 bp | TGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCCTTCGAAAGAGACTCTaGCTCTGGAGGCCTCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: WFIKMIFMGGREKQPFLPLRKRL*LWRPQL Trigger: CAGCTGAGGCCTCCAGAGGCAGAGTCTCTTTCGAAG...GGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CTCCTAGCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCTCCTGGGCACTCCCCTaGAATCTGCGGAATCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: LLALVHQNDIHGWKREAASWALP*NLRNPQ Trigger: TTGAGGATTCCGCAGATTCCAGGGGAGTGCCCAGGA...GGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGCTAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAATGGGCTGGCAGAAGATaGGCACTGGGGACAAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: HQNDIHGWKREAALSALEWAGRR*ALGTRG Trigger: ACCTCTTGTCCCCAGTGCCCATCTTCTGCCAGCCCA...TTCTAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGTCCAGTAAGCTGGGCTaGCAGAAGATGGGCACTGGG | + |
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Preference number: 4 (lower is better) Translates to: LWFIKMIFMGGREKQPFLSSKLG*QKMGTG Trigger: CCCAGTGCCCATCTTCTGCCAGCCCAGCTTACTGGA...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCTACGCTCCAGTAAGCTaGGCTGGCAGAAGATGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LVHQNDIHGWKREAALSAYAPVS*AGRRWA Trigger: TGCCCATCTTCTGCCAGCCCAGCTTACTGGAGCGTA...GGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR TCA 90 bp | CATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAACCTCATAGTCGTCCCTaGAGAAGGGGAACACTGCCT | + |
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Preference number: 4 (lower is better) Translates to: HQNDIHGWKREAALSALEPHSRP*RRGTLP Trigger: AGGCAGTGTTCCCCTTCTTCAGGGACGACTATGAGG...TTCTAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCAAGAGACTCTGCCTCTaGAGGCCTCAGCTGAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: LVHQNDIHGWKREAALSAKRLCL*RPQLRV Trigger: AACTCTCAGCTGAGGCCTCCAGAGGCAGAGTCTCTT...GGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAATCACAGAGCAGGTCCTaGGACCCTTGGGATTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: HQNDIHGWKREAALSALESQSRS*DPWDSV Trigger: CACTGAATCCCAAGGGTCCCAGGACCTGCTCTGTGA...TTCTAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGTTACCAAGGCGATCATaGCCAAGTAGGTGTAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: LWFIKMIFMGGREKQPFLLPRRS*PSRCRG Trigger: CCCCCTACACCTACTTGGCCATGATCGCCTTGGTAA...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | GACATGCTCCTAGCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCTTTGCAGGGTCCTTaGGCACCTTATGGAAGCACC | + |
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Preference number: 4 (lower is better) Translates to: DMLLALVHQNDIHGWKREALQGP*APYGST Trigger: GGTGCTTCCATAAGGTGCCCAAGGACCCTGCAAAGC...TTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGCTAGGAGCATGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | GCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGATACTCTTGTTGGGTaGTACTCCCTGGAAGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: ALVHQNDIHGWKREAALSDTLVG*YSLEEG Trigger: TCCCTCTTCCAGGGAGTACCACCCAACAAGAGTATC...AGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CCA 90 bp | CATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCCTAGAATCTTCTTCCTCCTCTTaGGGGTCTTCGAAAGAGACT | + |
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Preference number: 4 (lower is better) Translates to: HQNDIHGWKREAALSALESSSSS*GSSKET Trigger: AGTCTCTTTCGAAGACCCCCAAGAGGAGGAAGAAGA...TTCTAGGGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS TCA 90 bp | CTGTGGGTGCCCCGGTTCTGCCATCGACGGCACAGGGCAGTGTTCTaGAGGCGCAGCGCCTCAGCAGGAATCAGGCTCACATCCACCGCC | + |
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Preference number: 5 (lower is better) Translates to: LWVPRFCHRRHRAVF*RRSASAGIRLTSTA Trigger: GGCGGTGGATGTGAGCCTGATTCCTGCTGAGGCGCTGCGCCTTCAGAACACTGCCCTGTGCCGTCGATGGCAGAACCGGGGCACCCACAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS CCA 90 bp | GTGGCTGATAAGGCTGGCCGTGGAGCACGTAGGGGCTCAGGTCCTTaGCGAAAGCTCTGTGGGTGCCCCGGTTCTGCCATCGACGGCACA | + |
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Preference number: 5 (lower is better) Translates to: VADKAGRGARRGSGP*RKLCGCPGSAIDGT Trigger: TGTGCCGTCGATGGCAGAACCGGGGCACCCACAGAGCTTTCGCCAAGGACCTGAGCCCCTACGTGCTCCACGGCCAGCCTTATCAGCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS TCA 90 bp | CTCAGAGGAGCTAGAGGGTCCAGTGCCCATCCCTTCTTCCCCCTTTaGCAAGGTGCCTGCCTGAGCTGCAGTGCTCTGTCCAGGGAGCCC | + |
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Preference number: 5 (lower is better) Translates to: LRGARGSSAHPFFPL*QGACLSCSALSREP Trigger: GGGCTCCCTGGACAGAGCACTGCAGCTCAGGCAGGCACCTTGTCAAAGGGGGAAGAAGGGATGGGCACTGGACCCTCTAGCTCCTCTGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS GCA 90 bp | CCATCCCTTCTTCCCCCTTTGACAAGGTGCCTGCCTGAGCTGCAGTaGTCTGTCCAGGGAGCCCAGGATGCTGGGGCCATGTGGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: PSLLPPLTRCLPELQ*SVQGAQDAGAMWIL Trigger: AAGAATCCACATGGCCCCAGCATCCTGGGCTCCCTGGACAGAGCACTGCAGCTCAGGCAGGCACCTTGTCAAAGGGGGAAGAAGGGATGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS CCA 90 bp | TCTCTTCTTCCTCCTCTTGGGGGTCTTCGAAAGAGACTCTGCCTCTaGAGGCCTCAGCTGAGAGTTGTCGCGAGGCCCCATACAAGGGAG | + |
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Preference number: 5 (lower is better) Translates to: SLLPPLGGLRKRLCL*RPQLRVVARPHTRE Trigger: CTCCCTTGTATGGGGCCTCGCGACAACTCTCAGCTGAGGCCTCCAGAGGCAGAGTCTCTTTCGAAGACCCCCAAGAGGAGGAAGAAGAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CAA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGGAGGGGCCAGGAGCCTaGATCTGGGGTGACGGGAGA | + |
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Preference number: 5 (lower is better) Translates to: LWFIKMIFMGGREKQPFLEGPGA*IWGDGR Trigger: TCTCCCGTCACCCCAGATCAAGGCTCCTGGCCCCTC...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CAA 90 bp | CTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCCGGCTTTGCAGGGTCCTaGGGCACCTTATGGAAGCAC | + |
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Preference number: 5 (lower is better) Translates to: LVHQNDIHGWKREAALSAGFAGS*GTLWKH Trigger: GTGCTTCCATAAGGTGCCCAAGGACCCTGCAAAGCC...GGCAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CAA 90 bp | CTAGCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCCCTTCTTCCCCCTTaGACAAGGTGCCTGCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LALVHQNDIHGWKREAALSLLPP*TRCLPE Trigger: CTCAGGCAGGCACCTTGTCAAAGGGGGAAGAAGGGA...AAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CAA 90 bp | CTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTGCTCTTCTTCCTCCTCTaGGGGGTCTTCGAAAGAGAC | + |
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Preference number: 5 (lower is better) Translates to: LWFIKMIFMGGREKQPFLLFFLL*GVFERD Trigger: GTCTCTTTCGAAGACCCCCAAGAGGAGGAAGAAGAG...CAGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS-3UTR CAA 90 bp | GCTCTGGTTCATCAAAATGATATTCATGGGTGGAAGAGAGAAGCAGCCCTTTCTCGATTAGAGGAAAGGTaGTGGCGGATGGAGTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: ALVHQNDIHGWKREAALSRLEER*WRMESF Trigger: GAAGGACTCCATCCGCCACAACCTTTCCTCTAATCG...AGAAAGGGCTGCTTCTCTCTTCCACCCATGAATATCATTTTGATGAACCAGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS CCA 72 bp | AAGGCTGGCCGTGGAGCACGTAGGGGCTCAGGTCCTTaGCGAAAGCTCTGTGGGTGCCCCGGTTCTGCCATC | + |
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Preference number: 6 (lower is better) Translates to: KAGRGARRGSGP*RKLCGCPGSAI Trigger: GATGGCAGAACCGGGGCACCCACAGAGCTTTCGCCAAGGACCTGAGCCCCTACGTGCTCCACGGCCAGCCTT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS TCA 72 bp | CCCCGGTTCTGCCATCGACGGCACAGGGCAGTGTTCTaGAGGCGCAGCGCCTCAGCAGGAATCAGGCTCACA | + |
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Preference number: 6 (lower is better) Translates to: PRFCHRRHRAVF*RRSASAGIRLT Trigger: TGTGAGCCTGATTCCTGCTGAGGCGCTGCGCCTTCAGAACACTGCCCTGTGCCGTCGATGGCAGAACCGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS TCA 72 bp | CCCATCCCTTCTTCCCCCTTTGACAAGGTGCCTGCCTaGGCTGCAGTGCTCTGTCCAGGGAGCCCAGGATGC | + |
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Preference number: 6 (lower is better) Translates to: PIPSSPFDKVPA*AAVLCPGSPGC Trigger: GCATCCTGGGCTCCCTGGACAGAGCACTGCAGCTCAGGCAGGCACCTTGTCAAAGGGGGAAGAAGGGATGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS TCA 72 bp | GCTAGAGGGTCCAGTGCCCATCCCTTCTTCCCCCTTTaGCAAGGTGCCTGCCTGAGCTGCAGTGCTCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: ARGSSAHPFFPL*QGACLSCSALS Trigger: GGACAGAGCACTGCAGCTCAGGCAGGCACCTTGTCAAAGGGGGAAGAAGGGATGGGCACTGGACCCTCTAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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| CDS CCA 72 bp | CCTCCTCTTGGGGGTCTTCGAAAGAGACTCTGCCTCTaGAGGCCTCAGCTGAGAGTTGTCGCGAGGCCCCAT | + |
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Preference number: 6 (lower is better) Translates to: PPLGGLRKRLCL*RPQLRVVARPH Trigger: ATGGGGCCTCGCGACAACTCTCAGCTGAGGCCTCCAGAGGCAGAGTCTCTTTCGAAGACCCCCAAGAGGAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037824.6 |
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