Pregenerated sensors for FOXG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020950Ensembl transcript IDs: ENSMUST00000021333.5, ENSMUST00000179669.3
Found 141 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCAGATAGCTCCATGATAACTTATAATACTGCACACATGGAAATCTaGCAGCCTGTTGAGATAGACTTGTCAGGTTTGAATGAAATGGCA | + |
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Preference number: 1 (lower is better) Translates to: PDSSMITYNTAHMEI*QPVEIDLSGLNEMA Trigger: TGCCATTTCATTCAAACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATAAGTTATCATGGAGCTATCTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR TCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACAATCTGGCAGCCTGTTaGGATAGACTTGTCAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: SQGLRPPDSSMITYNTAHNLAAC*DRLVRF Trigger: AAACCTGACAAGTCTATCTCAACAGGCTGCCAGATT...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR CCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAGCACACATGGAAATCTaGCAGCCTGTTGAGATAGAC | + |
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Preference number: 2 (lower is better) Translates to: RQSLILSPSDSIEWAVLPAHMEI*QPVEID Trigger: GTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGC...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR GCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTATGTATTCTCCCACATTaGACCTCGCTGACACTCCAC | + |
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Preference number: 2 (lower is better) Translates to: KTTLTITQIDAAFAQHRLCILPH*TSLTLH Trigger: GTGGAGTGTCAGCGAGGTGCAATGTGGGAGAATACA...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR GCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATGTATTCTCCCACATTaGACCTCGCTGACACTCCAC | + |
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Preference number: 2 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRCILPH*TSLTLH Trigger: GTGGAGTGTCAGCGAGGTGCAATGTGGGAGAATACA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR CCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAATAATACTGCACACATaGAAATCTGGCAGCCTGTTG | + |
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Preference number: 2 (lower is better) Translates to: RQSLILSPSDSIEWAVLPIILHT*KSGSLL Trigger: CAACAGGCTGCCAGATTTCCATGTGTGCAGTATTAT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR TCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTACTTGTCAGGTTTGAATaGAATGGCAAAGCAGTCACT | + |
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Preference number: 2 (lower is better) Translates to: KTTLTITQIDAAFAQHRLLVRFE*NGKAVT Trigger: AGTGACTGCTTTGCCATTTCATTCAAACCTGACAAG...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR TCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGAAATCTGGCAGCCTGTTaGGATAGACTTGTCAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRNLAAC*DRLVRF Trigger: AAACCTGACAAGTCTATCTCAACAGGCTGCCAGATT...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR CAA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTaGTCAGGTTTGAATGAAATGGCAAAGCAGTCACTATTTAGATAC | + |
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Preference number: 2 (lower is better) Translates to: YNTAHMEIWQPVEID*SGLNEMAKQSLFRY Trigger: GTATCTAAATAGTGACTGCTTTGCCATTTCATTCAAACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR TCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGACTTGTCAGGTTTGAATaGAATGGCAAAGCAGTCACT | + |
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Preference number: 2 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRLVRFE*NGKAVT Trigger: AGTGACTGCTTTGCCATTTCATTCAAACCTGACAAG...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR CCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTATCGGATTCAATTGAATaGGCAGTGTTGCCAACTAAA | + |
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Preference number: 2 (lower is better) Translates to: KTTLTITQIDAAFAQHRLSDSIE*AVLPTK Trigger: TTTAGTTGGCAACACTGCCCATTCAATTGAATCCGA...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR CAA 90 bp | CAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTaGCCAACTAAACAACCTTCCTTTTTCGTTTGTTTGTTTACTTGT | + |
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Preference number: 2 (lower is better) Translates to: QSLILSPSDSIEWAV*PTKQPSFFVCLFTC Trigger: ACAAGTAAACAAACAAACGAAAAAGGAAGGTTGTTTAGTTGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR CAA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAATGTATTCTCCCACATaGCACCTCGCTGACACTCCA | + |
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Preference number: 3 (lower is better) Translates to: RQSLILSPSDSIEWAVLPMYSPT*HLADTP Trigger: TGGAGTGTCAGCGAGGTGCAATGTGGGAGAATACAT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR CAA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTAATGTATTCTCCCACATaGCACCTCGCTGACACTCCA | + |
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Preference number: 3 (lower is better) Translates to: KTTLTITQIDAAFAQHRLMYSPT*HLADTP Trigger: TGGAGTGTCAGCGAGGTGCAATGTGGGAGAATACAT...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR CAA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGAATTGAATGGGCAGTGTaGCCAACTAAACAACCTTCC | + |
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Preference number: 3 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRIEWAV*PTKQPS Trigger: GGAAGGTTGTTTAGTTGGCAACACTGCCCATTCAAT...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR CCA 72 bp | TCCATGATAACTTATAATACTGCACACATGGAAATCTaGCAGCCTGTTGAGATAGACTTGTCAGGTTTGAAT | + |
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Preference number: 3 (lower is better) Translates to: SMITYNTAHMEI*QPVEIDLSGLN Trigger: ATTCAAACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATAAGTTATCATGGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| 3UTR-3UTR CAA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGAGTATACCAAGTGCATTaGCTAGAATCCAATCTTTGG | + |
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Preference number: 3 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRVYQVH*LESNLW Trigger: CCAAAGATTGGATTCTAGCAAATGCACTTGGTATAC...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACGCTTGGCCCGAGACGTaGTGGAGCGGCGCCGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHAWPET*WSGAAA Trigger: AGCTGCGGCGCCGCTCCACCACGTCTCGGGCCAAGC...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR TCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCACGAGCGCAGCGGCCGTaGGGTGGTGCGTGGCGTACG | + |
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Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPRAQRP*GGAWRT Trigger: CGTACGCCACGCACCACCTCACGGCCGCTGCGCTCG...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR GCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACAGGGTCGAGGGGGCCTaGGGCGACGTAGAGGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHRVEGA*GDVEED Trigger: GTCCTCCTCTACGTCGCCGCAGGCCCCCTCGACCCT...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACGGGTGGTGGCTGTTGTaGTGGCCGTGGCTCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHGWWLL*WPWLAW Trigger: CCACGCGAGCCACGGCCACCACAACAGCCACCACCC...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACGCAGCGGCCGTGAGGTaGTGCGTGGCGTACGGGATC | + |
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Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHAAAVR*CVAYGI Trigger: GATCCCGTACGCCACGCACCACCTCACGGCCGCTGC...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTGCTTGGCCCGAGACGTaGTGGAGCGGCGCCGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGAWPET*WSGAAA Trigger: AGCTGCGGCGCCGCTCCACCACGTCTCGGGCCAAGC...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR TCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACACGGTCGTGCCGCCGATaGACACGTCGTCGCTCGACG | + |
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Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTRSCRR*TRRRST Trigger: CGTCGAGCGACGACGTGTTCATCGGCGGCACGACCG...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR TCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTCGGTCGTGCCGCCGATaGACACGTCGTCGCTCGACG | + |
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Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGRSCRR*TRRRST Trigger: CGTCGAGCGACGACGTGTTCATCGGCGGCACGACCG...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR GCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACAGCGGCCGTGAGGTGGTaGGTGGCGTACGGGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTAAVRW*VAYGIS Trigger: GGAGATCCCGTACGCCACGCACCACCTCACGGCCGC...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR GCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAAGGGTCGAGGGGGCCTaGGGCGACGTAGAGGAGGAC | + |
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Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPRVEGA*GDVEED Trigger: GTCCTCCTCTACGTCGCCGCAGGCCCCCTCGACCCT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACCTGTTGTGGTGGCCGTaGCTCGCGTGGTGGTTGTCG | + |
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Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHLLWWP*LAWWLS Trigger: CGACAACCACCACGCGAGCCACGGCCACCACAACAG...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACAGGGTGGTGGCTGTTGTaGTGGCCGTGGCTCGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTGWWLL*WPWLAW Trigger: CCACGCGAGCCACGGCCACCACAACAGCCACCACCC...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACACAGGAAGGGCGACATaGGCCAGTAGAGGGAGCCGG | + |
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Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHTGRAT*ASRGSR Trigger: CCGGCTCCCTCTACTGGCCCATGTCGCCCTTCCTGT...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTAGGGCATGGGGTGGCTaGGGTAGGCCGACGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGRAWGG*GRPTWS Trigger: GGACCACGTCGGCCTACCCCAGCCACCCCATGCCCT...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAAGGGCATGGGGTGGCTaGGGTAGGCCGACGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPRAWGG*GRPTWS Trigger: GGACCACGTCGGCCTACCCCAGCCACCCCATGCCCT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCACGGAGCTGTAGGGCATaGGGTGGCTGGGGTAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPRSCRA*GGWGRP Trigger: CGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCG...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTCGGCCCGGGCGCTCATaGACGTGCTGGTCTGCGAAG | + |
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Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGRPGRS*TCWSAK Trigger: CTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCG...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR TCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTGGTCTGCGAAGTCATTaGCGGGTGCGGGACGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGGLRSH*RVRDVG Trigger: CCCCACGTCCCGCACCCGTCAATGACTTCGCAGACC...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR GCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCATCTTGTCGCCCTCCTTaGCCCCCTCCCCGTCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPSCRPP*PPPRPC Trigger: GCAAGGACGGGGAGGGGGGCAAGGAGGGCGACAAGA...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR GCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACATCTTGTCGCCCTCCTTaGCCCCCTCCCCGTCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTSCRPP*PPPRPC Trigger: GCAAGGACGGGGAGGGGGGCAAGGAGGGCGACAAGA...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACATGGTGGCTGTTGTGGTaGCCGTGGCTCGCGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTWWLLW*PWLAWW Trigger: CCACCACGCGAGCCACGGCCACCACAACAGCCACCA...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTATGGCCCGAGACGTGGTaGAGCGGCGCCGCAGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLWPETW*SGAAAC Trigger: GCAAGCTGCGGCGCCGCTCCACCACGTCTCGGGCCA...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTACTGCTGGCGCGGGGGTaGTGCAGGGACAGGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLLLARG*CRDRKG Trigger: GCCCTTCCTGTCCCTGCACCACCCCCGCGCCAGCAG...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACCCACACTCAGCCCGTTaGCGGTGGAGAAGGAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHPHSAR*RWRRSG Trigger: ACCACTCCTTCTCCACCGCCAACGGGCTGAGTGTGG...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR TCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTACGGGATCTCCCCGTTaGCCAGCCGGTCCACACTCA | + |
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Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGTGSPR*PAGPHS Trigger: TGAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGT...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR TCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAACGGGATCTCCCCGTTaGCCAGCCGGTCCACACTCA | + |
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Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPTGSPR*PAGPHS Trigger: TGAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR GCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTGCCTTTGGCTCCAAGTaGGTCAGCCTTGGCCCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGAFGSK*VSLGPV Trigger: GACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGC...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACAGCCTTTGGCTCCAAGTaGGTCAGCCTTGGCCCCGTC | + |
|
Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTAFGSK*VSLGPV Trigger: GACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGC...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACGGGCGCTCATGGACGTaGTGGTCTGCGAAGTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHGRSWT*WSAKSL Trigger: CAATGACTTCGCAGACCAGCACGTCCATGAGCGCCC...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTTGGCCGTGGCTCGCGTaGTGGTTGTCGTTCTGGACG | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGWPWLA*WLSFWT Trigger: CGTCCAGAACGACAACCACCACGCGAGCCACGGCCA...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACATGGCCGTGGCTCGCGTaGTGGTTGTCGTTCTGGACG | + |
|
Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTWPWLA*WLSFWT Trigger: CGTCCAGAACGACAACCACCACGCGAGCCACGGCCA...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATGGCCCGAGACGTGGTaGAGCGGCGCCGCAGCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRWPETW*SGAAAC Trigger: GCAAGCTGCGGCGCCGCTCCACCACGTCTCGGGCCA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACAACAGGAAGGGCGACATaGGCCAGTAGAGGGAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTTGRAT*ASRGSR Trigger: CCGGCTCCCTCTACTGGCCCATGTCGCCCTTCCTGT...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGACTGCTGGCGCGGGGGTaGTGCAGGGACAGGAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRLLARG*CRDRKG Trigger: GCCCTTCCTGTCCCTGCACCACCCCCGCGCCAGCAG...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAAACTCAAAGTGCTGCTaGCGCGGGGGTGGTGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPNSKCC*RGGGAG Trigger: CCCTGCACCACCCCCGCGCCAGCAGCACTTTGAGTT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACAAACTCAAAGTGCTGCTaGCGCGGGGGTGGTGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTNSKCC*RGGGAG Trigger: CCCTGCACCACCCCCGCGCCAGCAGCACTTTGAGTT...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTACGGAGCTGTAGGGCATaGGGTGGCTGGGGTAGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLRSCRA*GGWGRP Trigger: CGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCG...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTAGCAGCGGCCGTGAGGTaGTGCGTGGCGTACGGGATC | + |
|
Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLAAAVR*CVAYGI Trigger: GATCCCGTACGCCACGCACCACCTCACGGCCGCTGC...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTACGGCCCGGGCGCTCATaGACGTGCTGGTCTGCGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLRPGRS*TCWSAK Trigger: CTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCG...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCATCCAGTAGTTGCCCTTaGCCGGGTCGTCGTAGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPSSSCP*PGRRSG Trigger: GCCACTACGACGACCCGGGCAAGGGCAACTACTGGA...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGAGCGGCCGTGAGGTGGTaGGTGGCGTACGGGATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRAAVRW*VAYGIS Trigger: GGAGATCCCGTACGCCACGCACCACCTCACGGCCGC...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACGCGGTGGAGAAGGAGTaGTTGTTGCCCAGCGAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHAVEKE*LLPSEF Trigger: AAACTCGCTGGGCAACAACCACTCCTTCTCCACCGC...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTCCACACTCAGCCCGTTaGCGGTGGAGAAGGAGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGPHSAR*RWRRSG Trigger: ACCACTCCTTCTCCACCGCCAACGGGCTGAGTGTGG...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACCGCTCATGGACGTGCTaGTCTGCGAAGTCATTGACG | + |
|
Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHRSWTC*SAKSLT Trigger: CGTCAATGACTTCGCAGACCAGCACGTCCATGAGCG...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR TCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGAGGTCTGCGAAGTCATTaGCGGGTGCGGGACGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRGLRSH*RVRDVG Trigger: CCCCACGTCCCGCACCCGTCAATGACTTCGCAGACC...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTTGTAACTCAAAGTGCTaGTGGCGCGGGGGTGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGCNSKC*WRGGGA Trigger: TGCACCACCCCCGCGCCAGCAGCACTTTGAGTTACA...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCACGTTGTAACTCAAAGTaGTGCTGGCGCGGGGGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPRCNSK*CWRGGG Trigger: ACCACCCCCGCGCCAGCAGCACTTTGAGTTACAACG...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTCGTTGTAACTCAAAGTaGTGCTGGCGCGGGGGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGRCNSK*CWRGGG Trigger: ACCACCCCCGCGCCAGCAGCACTTTGAGTTACAACG...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTATGGTGGTTGTCGTTCTaGACGGCCTCGGGGACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLWWLSF*TASGTR Trigger: CCTGGTCCCCGAGGCCGTCCAGAACGACAACCACCA...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGACCGTGGCTCGCGTGGTaGTTGTCGTTCTGGACGGCC | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRPWLAW*LSFWTA Trigger: GGCCGTCCAGAACGACAACCACCACGCGAGCCACGG...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATGGTGGCTGTTGTGGTaGCCGTGGCTCGCGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRWWLLW*PWLAWW Trigger: CCACCACGCGAGCCACGGCCACCACAACAGCCACCA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCATCAGCCCGTTGGCGGTaGAGAAGGAGTGGTTGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPSARWR*RRSGCC Trigger: GCAACAACCACTCCTTCTCCACCGCCAACGGGCTGA...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTGGGGGAAAAAGTAACTaGTCTGGCCCGCGAGCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGGGKSN*SGPRAG Trigger: ACCTGCTCGCGGGCCAGACCAGTTACTTTTTCCCCC...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAGCGGCTTCTCGTACTTaGCGTTCTTCTTGTCGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPAASRT*RSSCRP Trigger: AGGGCGACAAGAAGAACGGCAAGTACGAGAAGCCGC...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAATGGACGTGCTGGTCTaGGAAGTCATTGACGGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: RQSLILSPSDSIEWAVLPMDVLV*EVIDGC Trigger: GCACCCGTCAATGACTTCGCAGACCAGCACGTCCAT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACAATGGACGTGCTGGTCTaGGAAGTCATTGACGGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTMDVLV*EVIDGC Trigger: GCACCCGTCAATGACTTCGCAGACCAGCACGTCCAT...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACATGGGGTAGGCCGACGTaGTCCCGTTGTAACTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: TSKPYILQCILPHCTSLTWGRPT*SRCNSK Trigger: CTTTGAGTTACAACGGGACCACGTCGGCCTACCCCA...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTGCGGTGGAGAAGGAGTaGTTGTTGCCCAGCGAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGAVEKE*LLPSEF Trigger: AAACTCGCTGGGCAACAACCACTCCTTCTCCACCGC...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATCCAGTAGTTGCCCTTaGCCGGGTCGTCGTAGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRSSSCP*PGRRSG Trigger: GCCACTACGACGACCCGGGCAAGGGCAACTACTGGA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACAGAAGGAGTGGTTGTTaGCCAGCGAGTTTTGAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: SQGLRPPDSSMITYNTAHRRSGC*PASFES Trigger: TGACTCAAAACTCGCTGGGCAACAACCACTCCTTCT...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTAGGGCGCTCATGGACGTaGTGGTCTGCGAAGTCATTG | + |
|
Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLGRSWT*WSAKSL Trigger: CAATGACTTCGCAGACCAGCACGTCCATGAGCGCCC...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATGTAACTCAAAGTGCTaGTGGCGCGGGGGTGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRCNSKC*WRGGGA Trigger: TGCACCACCCCCGCGCCAGCAGCACTTTGAGTTACA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATCAGCCCGTTGGCGGTaGAGAAGGAGTGGTTGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRSARWR*RRSGCC Trigger: GCAACAACCACTCCTTCTCCACCGCCAACGGGCTGA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGAGGGGGAAAAAGTAACTaGTCTGGCCCGCGAGCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRGGKSN*SGPRAG Trigger: ACCTGCTCGCGGGCCAGACCAGTTACTTTTTCCCCC...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGACGCTTCTCGGGACTCTaGCTGATGGCCATCATGATG | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRRFSGL*LMAIMM Trigger: CATCATGATGGCCATCAGGCAGAGTCCCGAGAAGCG...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATGGGGTAGGCCGACGTaGTCCCGTTGTAACTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRWGRPT*SRCNSK Trigger: CTTTGAGTTACAACGGGACCACGTCGGCCTACCCCA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGACGCTCATGGACGTGCTaGTCTGCGAAGTCATTGACG | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRRSWTC*SAKSLT Trigger: CGTCAATGACTTCGCAGACCAGCACGTCCATGAGCG...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR TCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTCCTGATTTTGATGTGTaGAATAATCAGACAGTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGPDFDV*NNQTVP Trigger: GGGGACTGTCTGATTATTTCACACATCAAAATCAGG...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR GCA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGAAGAAGGAGTGGTTGTTaGCCAGCGAGTTTTGAGTCA | + |
|
Preference number: 4 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRRRSGC*PASFES Trigger: TGACTCAAAACTCGCTGGGCAACAACCACTCCTTCT...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR TCA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTACCTGATTTTGATGTGTaGAATAATCAGACAGTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: KTTLTITQIDAAFAQHRLPDFDV*NNQTVP Trigger: GGGGACTGTCTGATTATTTCACACATCAAAATCAGG...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CCA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTAATGTATTAAAGGGTTaGAAGAAGACCCCTGATTTT | + |
|
Preference number: 4 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGNVLKG*KKTPDF Trigger: AAAATCAGGGGTCTTCTTCCAACCCTTTAATACATT...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CCA 90 bp | GCCTTGGCCCCGTCCAGGGCGGTGGAGGGCGGGAGCAGGAGCGGCTaGGGACCCTTGTCGTCGTCGGCTGCTGGGGCGCCGCGCGCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: ALAPSRAVEGGSRSG*GPLSSSAAGAPRAC Trigger: GCAGGCGCGCGGCGCCCCAGCAGCCGACGACGACAAGGGTCCCCAGCCGCTCCTGCTCCCGCCCTCCACCGCCCTGGACGGGGCCAAGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CCA 90 bp | GCCCGACGGGCGCCAGCTCCGCCGGCCCGCCGCCCGGCTCGCCTTTaGCTCCAAGTGCGTCAGCCTTGGCCCCGTCCAGGGCGGTGGAGG | + |
|
Preference number: 5 (lower is better) Translates to: ARRAPAPPARRPARL*LQVRQPWPRPGRWR Trigger: CCTCCACCGCCCTGGACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGCGAGCCGGGCGGCGGGCCGGCGGAGCTGGCGCCCGTCGGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS GCA 90 bp | CGCCAGCTCCGCCGGCCCGCCGCCCGGCTCGCCTTTGGCTCCAAGTaGGTCAGCCTTGGCCCCGTCCAGGGCGGTGGAGGGCGGGAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RQLRRPAARLAFGSK*VSLGPVQGGGGREQ Trigger: CTGCTCCCGCCCTCCACCGCCCTGGACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGCGAGCCGGGCGGCGGGCCGGCGGAGCTGGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS GCA 90 bp | AGGCCGCAGGGCACCGAGGCGGCGAGCGCAGCGGCCGTGAGGTGGTaGGTGGCGTACGGGATCTCCCCGTTGACCAGCCGGTCCACACTC | + |
|
Preference number: 5 (lower is better) Translates to: RPQGTEAASAAAVRW*VAYGISPLTSRSTL Trigger: GAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGCACCACCTCACGGCCGCTGCGCTCGCCGCCTCGGTGCCCTGCGGCCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CCA 90 bp | GACAGGCCGCAGGGCACCGAGGCGGCGAGCGCAGCGGCCGTGAGGTaGTGCGTGGCGTACGGGATCTCCCCGTTGACCAGCCGGTCCACA | + |
|
Preference number: 5 (lower is better) Translates to: DRPQGTEAASAAAVR*CVAYGISPLTSRST Trigger: TGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGCACCACCTCACGGCCGCTGCGCTCGCCGCCTCGGTGCCCTGCGGCCTGTC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CCA 90 bp | CGCCTTTGGCTCCAAGTGCGTCAGCCTTGGCCCCGTCCAGGGCGGTaGAGGGCGGGAGCAGGAGCGGCTGGGGACCCTTGTCGTCGTCGG | + |
|
Preference number: 5 (lower is better) Translates to: RLWLQVRQPWPRPGR*RAGAGAAGDPCRRR Trigger: CCGACGACGACAAGGGTCCCCAGCCGCTCCTGCTCCCGCCCTCCACCGCCCTGGACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS GCA 90 bp | GGCAAAGAGGGTCTTAAAGACTCACAGGGCAGGGTCGAGGGGGCCTaGGGCGACGTAGAGGAGGACGCGGCCCGGGCGCTCATGGACGTG | + |
|
Preference number: 5 (lower is better) Translates to: GKEGLKDSQGRVEGA*GDVEEDAARALMDV Trigger: CACGTCCATGAGCGCCCGGGCCGCGTCCTCCTCTACGTCGCCGCAGGCCCCCTCGACCCTGCCCTGTGAGTCTTTAAGACCCTCTTTGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS TCA 90 bp | GGACGCGGCCCGGGCGCTCATGGACGTGCTGGTCTGCGAAGTCATTaGCGGGTGCGGGACGTGGGGGAAAAAGTAACTGGTCTGGCCCGC | + |
|
Preference number: 5 (lower is better) Translates to: GRGPGAHGRAGLRSH*RVRDVGEKVTGLAR Trigger: GCGGGCCAGACCAGTTACTTTTTCCCCCACGTCCCGCACCCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CCA 90 bp | TGGTGGCTGTTGTGGTGGCCGTGGCTCGCGTGGTGGTTGTCGTTCTaGACGGCCTCGGGGACCAGGCTGTTGATGCTGAACGAGGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: WWLLWWPWLAWWLSF*TASGTRLLMLNEDL Trigger: CAAGTCCTCGTTCAGCATCAACAGCCTGGTCCCCGAGGCCGTCCAGAACGACAACCACCACGCGAGCCACGGCCACCACAACAGCCACCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS GCA 90 bp | GCCGGTCCACACTCAGCCCGTTGGCGGTGGAGAAGGAGTGGTTGTTaGCCAGCGAGTTTTGAGTCAACACGGAGCTGTAGGGCATGGGGT | + |
|
Preference number: 5 (lower is better) Translates to: AGPHSARWRWRRSGC*PASFESTRSCRAWG Trigger: ACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAACCACTCCTTCTCCACCGCCAACGGGCTGAGTGTGGACCGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CCA 90 bp | CCAGCGAGTTTTGAGTCAACACGGAGCTGTAGGGCATGGGGTGGCTaGGGTAGGCCGACGTGGTCCCGTTGTAACTCAAAGTGCTGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PASFESTRSCRAWGG*GRPTWSRCNSKCCW Trigger: CCAGCAGCACTTTGAGTTACAACGGGACCACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CCA 90 bp | GGTTGTTGCCCAGCGAGTTTTGAGTCAACACGGAGCTGTAGGGCATaGGGTGGCTGGGGTAGGCCGACGTGGTCCCGTTGTAACTCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: GCCPASFESTRSCRA*GGWGRPTWSRCNSK Trigger: CTTTGAGTTACAACGGGACCACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACTGGCCCGCGAGCAGGTaGACGGAGCAGGGGTTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: SQGLRPPDSSMITYNTAHWPASR*TEQGLR Trigger: CCTCAACCCCTGCTCCGTCAACCTGCTCGCGGGCCA...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CAA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCATGGCCCGCGAGCAGGTaGACGGAGCAGGGGTTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: RQSLILSPSDSIEWAVLPWPASR*TEQGLR Trigger: CCTCAACCCCTGCTCCGTCAACCTGCTCGCGGGCCA...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACATCCACACTCAGCCCGTaGGCGGTGGAGAAGGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: TSKPYILQCILPHCTSLTSTLSP*AVEKEW Trigger: CCACTCCTTCTCCACCGCCAACGGGCTGAGTGTGGA...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CAA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACATACGGGATCTCCCCGTaGACCAGCCGGTCCACACTC | + |
|
Preference number: 5 (lower is better) Translates to: TSKPYILQCILPHCTSLTYGISP*TSRSTL Trigger: GAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGTA...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | TATAATACTGCACACATGGAAATCTGGCAGCCTGTTGAGATAGACTTGTCAGGTTGGTCTGCGAAGTCATaGACGGGTGCGGGACGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: YNTAHMEIWQPVEIDLSGWSAKS*TGAGRG Trigger: CCCACGTCCCGCACCCGTCAATGACTTCGCAGACCA...ACCTGACAAGTCTATCTCAACAGGCTGCCAGATTTCCATGTGTGCAGTATTATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CAA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTATGGCTCGCGTGGTGGTaGTCGTTCTGGACGGCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: KTTLTITQIDAAFAQHRLWLAWW*SFWTAS Trigger: CGAGGCCGTCCAGAACGACAACCACCACGCGAGCCA...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS-3UTR CAA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAGGCGGCTTCTCGTACTaGCCGTTCTTCTTGTCGCCC | + |
|
Preference number: 5 (lower is better) Translates to: RQSLILSPSDSIEWAVLPGGFSY*PFFLSP Trigger: GGGCGACAAGAAGAACGGCAAGTACGAGAAGCCGCC...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACAGGCGGCTTCTCGTACTaGCCGTTCTTCTTGTCGCCC | + |
|
Preference number: 5 (lower is better) Translates to: TSKPYILQCILPHCTSLTGGFSY*PFFLSP Trigger: GGGCGACAAGAAGAACGGCAAGTACGAGAAGCCGCC...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCATCGGGGACCAGGCTGTaGATGCTGAACGAGGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: RQSLILSPSDSIEWAVLPSGTRL*MLNEDL Trigger: CAAGTCCTCGTTCAGCATCAACAGCCTGGTCCCCGA...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | ACGTCCAAACCTTATATTCTACAATGTATTCTCCCACATTGCACCTCGCTGACATCGGGGACCAGGCTGTaGATGCTGAACGAGGACTTG | + |
|
Preference number: 5 (lower is better) Translates to: TSKPYILQCILPHCTSLTSGTRL*MLNEDL Trigger: CAAGTCCTCGTTCAGCATCAACAGCCTGGTCCCCGA...TGTCAGCGAGGTGCAATGTGGGAGAATACATTGTAGAATATAAGGTTTGGACGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATGGCTCGCGTGGTGGTaGTCGTTCTGGACGGCCTCG | + |
|
Preference number: 5 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRWLAWW*SFWTAS Trigger: CGAGGCCGTCCAGAACGACAACCACCACGCGAGCCA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | TCTCAAGGCCTGCGTCCACCAGATAGCTCCATGATAACTTATAATACTGCACACGTTGCCCAGCGAGTTTaGAGTCAACACGGAGCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: SQGLRPPDSSMITYNTAHVAQRV*SQHGAV Trigger: TACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAAC...GTGTGCAGTATTATAAGTTATCATGGAGCTATCTGGTGGACGCAGGCCTTGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTATGGTCTGCGAAGTCATaGACGGGTGCGGGACGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: KTTLTITQIDAAFAQHRLWSAKS*TGAGRG Trigger: CCCACGTCCCGCACCCGTCAATGACTTCGCAGACCA...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATCCACACTCAGCCCGTaGGCGGTGGAGAAGGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRSTLSP*AVEKEW Trigger: CCACTCCTTCTCCACCGCCAACGGGCTGAGTGTGGA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | AACATTTTTGTAAGTGACAAACACGGGCATATGACCACAGTATCACAATCAAGATACGGGATCTCCCCGTaGACCAGCCGGTCCACACTC | + |
|
Preference number: 5 (lower is better) Translates to: NIFVSDKHGHMTTVSQSRYGISP*TSRSTL Trigger: GAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGTA...TCTTGATTGTGATACTGTGGTCATATGCCCGTGTTTGTCACTTACAAAAATGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | AAGACAACATTAACAATCACTCAAATTGATGCGGCATTTGCGCAACACAGGTTAGTTGCCCAGCGAGTTTaGAGTCAACACGGAGCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: KTTLTITQIDAAFAQHRLVAQRV*SQHGAV Trigger: TACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAAC...TAACCTGTGTTGCGCAAATGCCGCATCAATTTGAGTGATTGTTAATGTTGTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS-3UTR CAA 90 bp | AGGCAATCCTTAATTTTGTCTCCTTCGGATTCAATTGAATGGGCAGTGTTGCCAATGCTGAACGAGGACTaGGGAATCATTTTCACCTCT | + |
|
Preference number: 5 (lower is better) Translates to: RQSLILSPSDSIEWAVLPMLNED*GIIFTS Trigger: AGAGGTGAAAATGATTCCCAAGTCCTCGTTCAGCAT...TGGCAACACTGCCCATTCAATTGAATCCGAAGGAGACAAAATTAAGGATTGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS GCA 72 bp | CGCCGGCCCGCCGCCCGGCTCGCCTTTGGCTCCAAGTaGGTCAGCCTTGGCCCCGTCCAGGGCGGTGGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: RRPAARLAFGSK*VSLGPVQGGGG Trigger: CCCTCCACCGCCCTGGACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGCGAGCCGGGCGGCGGGCCGGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CCA 72 bp | GCGCCAGCTCCGCCGGCCCGCCGCCCGGCTCGCCTTTaGCTCCAAGTGCGTCAGCCTTGGCCCCGTCCAGGG | + |
|
Preference number: 6 (lower is better) Translates to: APAPPARRPARL*LQVRQPWPRPG Trigger: CCCTGGACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGCGAGCCGGGCGGCGGGCCGGCGGAGCTGGCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS GCA 72 bp | GGCACCGAGGCGGCGAGCGCAGCGGCCGTGAGGTGGTaGGTGGCGTACGGGATCTCCCCGTTGACCAGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: GTEAASAAAVRW*VAYGISPLTSR Trigger: CCGGCTGGTCAACGGGGAGATCCCGTACGCCACGCACCACCTCACGGCCGCTGCGCTCGCCGCCTCGGTGCC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CAA 72 bp | CCGCCCGGCTCGCCTTTGGCTCCAAGTGCGTCAGCCTaGGCCCCGTCCAGGGCGGTGGAGGGCGGGAGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: PPGSPLAPSASA*APSRAVEGGSR Trigger: CCTGCTCCCGCCCTCCACCGCCCTGGACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGCGAGCCGGGCGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CCA 72 bp | CGCCCGGCTCGCCTTTGGCTCCAAGTGCGTCAGCCTTaGCCCCGTCCAGGGCGGTGGAGGGCGGGAGCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: RPARLWLQVRQP*PRPGRWRAGAG Trigger: TCCTGCTCCCGCCCTCCACCGCCCTGGACGGGGCCAAGGCTGACGCACTTGGAGCCAAAGGCGAGCCGGGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CCA 72 bp | CAGGGCACCGAGGCGGCGAGCGCAGCGGCCGTGAGGTaGTGCGTGGCGTACGGGATCTCCCCGTTGACCAGC | + |
|
Preference number: 6 (lower is better) Translates to: QGTEAASAAAVR*CVAYGISPLTS Trigger: GCTGGTCAACGGGGAGATCCCGTACGCCACGCACCACCTCACGGCCGCTGCGCTCGCCGCCTCGGTGCCCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CAA 90 bp | GTGAGGCCGGTGGAGGTGAGGCGCGCCCCGCGCTTAAAGGCCAGCTaGGCCCGAGACGTGGTGGAGCGGCGCCGCAGCTTGCCGGTCGTG | + |
|
Preference number: 6 (lower is better) Translates to: VRPVEVRRAPRLKAS*ARDVVERRRSLPVV Trigger: CACGACCGGCAAGCTGCGGCGCCGCTCCACCACGTCTCGGGCCAAGCTGGCCTTTAAGCGCGGGGCGCGCCTCACCTCCACCGGCCTCAC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CAA 72 bp | GTGGAGGTGAGGCGCGCCCCGCGCTTAAAGGCCAGCTaGGCCCGAGACGTGGTGGAGCGGCGCCGCAGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: VEVRRAPRLKAS*ARDVVERRRSL Trigger: CAAGCTGCGGCGCCGCTCCACCACGTCTCGGGCCAAGCTGGCCTTTAAGCGCGGGGCGCGCCTCACCTCCAC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CAA 90 bp | TTAAAGGCCAGCTTGGCCCGAGACGTGGTGGAGCGGCGCCGCAGCTaGCCGGTCGTGCCGCCGATGAACACGTCGTCGCTCGACGGGTCG | + |
|
Preference number: 6 (lower is better) Translates to: LKASLARDVVERRRS*PVVPPMNTSSLDGS Trigger: CGACCCGTCGAGCGACGACGTGTTCATCGGCGGCACGACCGGCAAGCTGCGGCGCCGCTCCACCACGTCTCGGGCCAAGCTGGCCTTTAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CAA 90 bp | AGCGCAGCGGCCGTGAGGTGGTGCGTGGCGTACGGGATCTCCCCGTaGACCAGCCGGTCCACACTCAGCCCGTTGGCGGTGGAGAAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: SAAAVRWCVAYGISP*TSRSTLSPLAVEKE Trigger: CTCCTTCTCCACCGCCAACGGGCTGAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGCACCACCTCACGGCCGCTGCGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS TCA 72 bp | TGGAGCGGCGCCGCAGCTTGCCGGTCGTGCCGCCGATaGACACGTCGTCGCTCGACGGGTCGAGCATCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: WSGAAACRSCRR*TRRRSTGRASS Trigger: ACTGGATGCTCGACCCGTCGAGCGACGACGTGTTCATCGGCGGCACGACCGGCAAGCTGCGGCGCCGCTCCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS CAA 72 bp | GCCGTGAGGTGGTGCGTGGCGTACGGGATCTCCCCGTaGACCAGCCGGTCCACACTCAGCCCGTTGGCGGTG | + |
|
Preference number: 6 (lower is better) Translates to: AVRWCVAYGISP*TSRSTLSPLAV Trigger: CACCGCCAACGGGCTGAGTGTGGACCGGCTGGTCAACGGGGAGATCCCGTACGCCACGCACCACCTCACGGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
||
| CDS GCA 72 bp | GAGGACGCGGCCCGGGCGCTCATGGACGTGCTGGTCTaGGAAGTCATTGACGGGTGCGGGACGTGGGGGAAA | + |
|
Preference number: 6 (lower is better) Translates to: EDAARALMDVLV*EVIDGCGTWGK Trigger: TTTCCCCCACGTCCCGCACCCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCCTC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS GCA 72 bp | GGTAGGCCGACGTGGTCCCGTTGTAACTCAAAGTGCTaGTGGCGCGGGGGTGGTGCAGGGACAGGAAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: GRPTWSRCNSKC*WRGGGAGTGRA Trigger: CGCCCTTCCTGTCCCTGCACCACCCCCGCGCCAGCAGCACTTTGAGTTACAACGGGACCACGTCGGCCTACC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CAA 90 bp | AGGACGCGGCCCGGGCGCTCATGGACGTGCTGGTCTGCGAAGTCATaGACGGGTGCGGGACGTGGGGGAAAAAGTAACTGGTCTGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: RTRPGRSWTCWSAKS*TGAGRGGKSNWSGP Trigger: CGGGCCAGACCAGTTACTTTTTCCCCCACGTCCCGCACCCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGGCCGCGTCCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS GCA 72 bp | TGGGGTAGGCCGACGTGGTCCCGTTGTAACTCAAAGTaGTGCTGGCGCGGGGGTGGTGCAGGGACAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: WGRPTWSRCNSK*CWRGGGAGTGR Trigger: CCTTCCTGTCCCTGCACCACCCCCGCGCCAGCAGCACTTTGAGTTACAACGGGACCACGTCGGCCTACCCCA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CCA 72 bp | AGGCCGACGTGGTCCCGTTGTAACTCAAAGTGCTGCTaGCGCGGGGGTGGTGCAGGGACAGGAAGGGCGACA | + |
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Preference number: 6 (lower is better) Translates to: RPTWSRCNSKCC*RGGGAGTGRAT Trigger: TGTCGCCCTTCCTGTCCCTGCACCACCCCCGCGCCAGCAGCACTTTGAGTTACAACGGGACCACGTCGGCCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CCA 72 bp | AGCTGTAGGGCATGGGGTGGCTGGGGTAGGCCGACGTaGTCCCGTTGTAACTCAAAGTGCTGCTGGCGCGGG | + |
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Preference number: 6 (lower is better) Translates to: SCRAWGGWGRPT*SRCNSKCCWRG Trigger: CCCGCGCCAGCAGCACTTTGAGTTACAACGGGACCACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CAA 90 bp | CAGCCCGTTGGCGGTGGAGAAGGAGTGGTTGTTGCCCAGCGAGTTTaGAGTCAACACGGAGCTGTAGGGCATGGGGTGGCTGGGGTAGGC | + |
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Preference number: 6 (lower is better) Translates to: QPVGGGEGVVVAQRV*SQHGAVGHGVAGVG Trigger: GCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAACCACTCCTTCTCCACCGCCAACGGGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CCA 72 bp | CCAGCGAGTTTTGAGTCAACACGGAGCTGTAGGGCATaGGGTGGCTGGGGTAGGCCGACGTGGTCCCGTTGT | + |
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Preference number: 6 (lower is better) Translates to: PASFESTRSCRA*GGWGRPTWSRC Trigger: ACAACGGGACCACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CAA 72 bp | CCCGGGCGCTCATGGACGTGCTGGTCTGCGAAGTCATaGACGGGTGCGGGACGTGGGGGAAAAAGTAACTGG | + |
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Preference number: 6 (lower is better) Translates to: PGRSWTCWSAKS*TGAGRGGKSNW Trigger: CCAGTTACTTTTTCCCCCACGTCCCGCACCCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS TCA 72 bp | CCGGGCGCTCATGGACGTGCTGGTCTGCGAAGTCATTaGCGGGTGCGGGACGTGGGGGAAAAAGTAACTGGT | + |
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Preference number: 6 (lower is better) Translates to: PGAHGRAGLRSH*RVRDVGEKVTG Trigger: ACCAGTTACTTTTTCCCCCACGTCCCGCACCCGTCAATGACTTCGCAGACCAGCACGTCCATGAGCGCCCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CAA 72 bp | GGCGGTGGAGAAGGAGTGGTTGTTGCCCAGCGAGTTTaGAGTCAACACGGAGCTGTAGGGCATGGGGTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GGGEGVVVAQRV*SQHGAVGHGVA Trigger: AGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAAACTCGCTGGGCAACAACCACTCCTTCTCCACCGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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| CDS CCA 72 bp | TTTGAGTCAACACGGAGCTGTAGGGCATGGGGTGGCTaGGGTAGGCCGACGTGGTCCCGTTGTAACTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: FESTRSCRAWGG*GRPTWSRCNSK Trigger: CTTTGAGTTACAACGGGACCACGTCGGCCTACCCCAGCCACCCCATGCCCTACAGCTCCGTGTTGACTCAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021333.5 ENSMUST00000179669.3 |
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