Pregenerated sensors for FOXF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038402Ensembl transcript IDs: ENSMUST00000042054.3
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTaGGGGACTGGGAGTGGGTGGAAGAAATGTCCTACTGAGCCAGGG | + |
|
Preference number: 1 (lower is better) Translates to: FFTMFFGTCIRRREC*GTGSGWKKCPTEPG Trigger: CCCTGGCTCAGTAGGACATTTCTTCCACCCACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR TCA 90 bp | CGGGCAAATATCGGTGAGCAGAACTCCCTTGGGTATTTGTCTAAGTaGTGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACAG | + |
|
Preference number: 1 (lower is better) Translates to: RANIGEQNSLGYLSK*WVCYLLLFAIQRAQ Trigger: CTGTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAATACCCAAGGGAGTTCTGCTCACCGATATTTGCCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR TCA 90 bp | AAGGGAGTGTTGGGGGACTGGGAGTGGGTGGAAGAAATGTCCTACTaGGCCAGGGAACTAGAGAAGGCTTTCTTGAAATTGTGTGCTTTT | + |
|
Preference number: 1 (lower is better) Translates to: KGVLGDWEWVEEMSY*ARELEKAFLKLCAF Trigger: AAAAGCACACAATTTCAAGAAAGCCTTCTCTAGTTCCCTGGCTCAGTAGGACATTTCTTCCACCCACTCCCAGTCCCCCAACACTCCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR-3UTR CCA 90 bp | CGGTTCTTCATTTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTAGAGGGAGAGCAGAGTaGCCTTCAAGGCCTCTGTCC | + |
|
Preference number: 2 (lower is better) Translates to: RFFISSQCSLAPVSEEGSRGRAE*PSRPLS Trigger: GGACAGAGGCCTTGAAGGCCACTCTGCTCTCCCTCT...ACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAATGAAGAACCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR CAA 90 bp | TTTCTTAAACTAGACTATCGGTTCTTCATTTCTTCACAATGTTCTTaGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTG | + |
|
Preference number: 2 (lower is better) Translates to: FLKLDYRFFISSQCS*APVSEEGSVGGLGV Trigger: CACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAATGAAGAACCGATAGTCTAGTTTAAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR-3UTR TCA 90 bp | CATTTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGTTAGCACTGCAATTTTaGAAAGCACACACACACACA | + |
|
Preference number: 2 (lower is better) Translates to: HFFTMFFGTCIRRRECWGLALQF*KAHTHT Trigger: TGTGTGTGTGTGTGCTTTTCAAAATTGCAGTGCTAA...CCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR CAA 90 bp | CTAGAGAAGGCTTTCTTGAAATTGTGTGCTTTTAGCACTGCAATTTaGAAAAGCACACACACACACACACACACACACACACACACACAC | + |
|
Preference number: 2 (lower is better) Translates to: LEKAFLKLCAFSTAI*KSTHTHTHTHTHTH Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTTTTCAAAATTGCAGTGCTAAAAGCACACAATTTCAAGAAAGCCTTCTCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR-3UTR CCA 90 bp | AGCCACTTTCTTAAACTAGACTATCGGTTCTTCATTTCTTCACAATGTTCTTTGTTGGGGGACTGGGAGTaGGTGGAAGAAATGTCCTAC | + |
|
Preference number: 2 (lower is better) Translates to: SHFLKLDYRFFISSQCSLLGDWE*VEEMSY Trigger: GTAGGACATTTCTTCCACCCACTCCCAGTCCCCCAA...CAAAGAACATTGTGAAGAAATGAAGAACCGATAGTCTAGTTTAAGAAAGTGGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR GCA 72 bp | CAGCGTGCACAGTGTGAGTCCGTTGCAGTTCCTGGCTaGCCCTCTCGGAGGGGAGAGGAGAAGAAGGCAGAA | + |
|
Preference number: 3 (lower is better) Translates to: QRAQCESVAVPG*PSRRGEEKKAE Trigger: TTCTGCCTTCTTCTCCTCTCCCCTCCGAGAGGGGCAGCCAGGAACTGCAACGGACTCACACTGTGCACGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR TCA 72 bp | TTGGGGGACTGGGAGTGGGTGGAAGAAATGTCCTACTaGGCCAGGGAACTAGAGAAGGCTTTCTTGAAATTG | + |
|
Preference number: 3 (lower is better) Translates to: LGDWEWVEEMSY*ARELEKAFLKL Trigger: CAATTTCAAGAAAGCCTTCTCTAGTTCCCTGGCTCAGTAGGACATTTCTTCCACCCACTCCCAGTCCCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR TCA 72 bp | ATCGGTGAGCAGAACTCCCTTGGGTATTTGTCTAAGTaGTGGGTGTGCTACTTACTGCTATTCGCTATCCAG | + |
|
Preference number: 3 (lower is better) Translates to: IGEQNSLGYLSK*WVCYLLLFAIQ Trigger: CTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAATACCCAAGGGAGTTCTGCTCACCGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR TCA 90 bp | CGTGCACAGTGTGAGTCCGTTGCAGTTCCTGGCTGCCCCTCTCGGAGGGGAGAGTGCCATAGCCGGGGATaGGGGCACAGGGCTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RAQCESVAVPGCPSRRGECHSRG*GHRAAA Trigger: AGCAGCAGCCCTGTGCCCTCATCCCCGGCTATGGCA...CTCTCCCCTCCGAGAGGGGCAGCCAGGAACTGCAACGGACTCACACTGTGCACG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR TCA 90 bp | CGTGCACAGTGTGAGTCCGTTGCAGTTCCTGGCTGCCCCTCTCGGAGGGGAGAGGGGCAGGCGGCTGCTTaGGGTAAGGTGAAGCGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RAQCESVAVPGCPSRRGEGQAAA*GKVKRQ Trigger: CTGGCGCTTCACCTTACCTCAAGCAGCCGCCTGCCC...CTCTCCCCTCCGAGAGGGGCAGCCAGGAACTGCAACGGACTCACACTGTGCACG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | TTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGGGTGGAAGTGGAAGTCGAAGCCCTaGGGCAGCAGCGAGGCCCCG | + |
|
Preference number: 4 (lower is better) Translates to: FGTCIRRRECWGTGSGWKWKSKP*GSSEAP Trigger: CGGGGCCTCGCTGCTGCCCCAGGGCTTCGACTTCCA...CTTCCACCCACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR GCA 90 bp | GCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGGGTGGAAGAAATTGGAGGTGGTGTGGATaGGCGTGGCCCGGAGCACCC | + |
|
Preference number: 4 (lower is better) Translates to: APVSEEGSVGGLGVGGRNWRWCG*AWPGAP Trigger: GGGTGCTCCGGGCCACGCGCATCCACACCACCTCCA...ATTTCTTCCACCCACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR GCA 90 bp | CGTGCACAGTGTGAGTCCGTTGCAGTTCCTGGCTGCCCCTCTCGGAGGGGAGAGACGAGTAGGAAGACATaGTGGGGTGCAGACCAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: RAQCESVAVPGCPSRRGETSRKT*WGADQQ Trigger: CTGCTGGTCTGCACCCCAGCATGTCTTCCTACTCGT...CTCTCCCCTCCGAGAGGGGCAGCCAGGAACTGCAACGGACTCACACTGTGCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR CAA 72 bp | TGCTATTCGCTATCCAGCGTGCACAGTGTGAGTCCGTaGCAGTTCCTGGCTGCCCCTCTCGGAGGGGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: CYSLSSVHSVSP*QFLAAPLGGER Trigger: CCTCTCCCCTCCGAGAGGGGCAGCCAGGAACTGCAACGGACTCACACTGTGCACGCTGGATAGCGAATAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | CAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGCGGGCACCGGGCAGCTaGCCATATAGGTGGAGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: QCSLAPVSEEGSVGGLGVRAPGS*PYRWSP Trigger: CGGGCTCCACCTATATGGCCAGCTGCCCGGTGCCCG...CACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR GCA 90 bp | CAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGGCACAGGGCTGCTGCTaGTGTCCGGCCCATAGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: QCSLAPVSEEGSVGGLGVAQGCC*CPAHSP Trigger: GGGACTATGGGCCGGACAGCAGCAGCAGCCCTGTGC...CACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | GATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACAGTGTGAGTCCGCGCGGGATTACTGCTTaGCGTCAGGGCAGGCGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: DGCATYCYSLSSVHSVSPRGITA*RQGRRL Trigger: CAGCCGCCTGCCCTGACGCCAAGCAGTAATCCCGCG...CGGACTCACACTGTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGTCTAAGTGATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACGCCGACGGGGGCGCTTaGAAGTCGAAGCCCTGGGGC | + |
|
Preference number: 4 (lower is better) Translates to: ICLSDGCATYCYSLSSVHADGGA*KSKPWG Trigger: GCCCCAGGGCTTCGACTTCCAAGCGCCCCCGTCGGC...GTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | GCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGGGTGGAAGAAATTGTCGCACACTGGAGTaGAGTGGTGCTGGTAACGGG | + |
|
Preference number: 4 (lower is better) Translates to: APVSEEGSVGGLGVGGRNCRTLE*SGAGNG Trigger: CCCGTTACCAGCACCACTCCACTCCAGTGTGCGACA...ATTTCTTCCACCCACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR TCA 90 bp | TTTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACACGGGGCAGTCCGACTaGGAGATCCTCGCGGGCGTT | + |
|
Preference number: 4 (lower is better) Translates to: FLHNVLWHLYPKKGVLGDTGQSD*EILAGV Trigger: AACGCCCGCGAGGATCTCTCAGTCGGACTGCCCCGT...GTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR GCA 90 bp | CATTTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGAGGCCGCGGGATTACTaGTTGGCGTCAGGGCAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: HFFTMFFGTCIRRRECWGRPRDY*LASGQA Trigger: CGCCTGCCCTGACGCCAAGCAGTAATCCCGCGGCCT...CCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | ATTTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGAAAGTGGACTCCAGGGTaGCGGCGGGTGGCGGGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: ISSQCSLAPVSEEGSVGGKWTPG*RRVAGS Trigger: TGAGCCCGCCACCCGCCGCCACCCTGGAGTCCACTT...TCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGTCTAAGTGATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACCCGAGGTTGCCTTCTTaGTGCCTCCACTCCCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: ICLSDGCATYCYSLSSVHPRLPS*CLHSRR Trigger: GCGCCGGGAGTGGAGGCACCAAGAAGGCAACCTCGG...GTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | ATTTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGAAGGTGGAGCCCGGGTTaGGCGACATGTGGGGGACGT | + |
|
Preference number: 4 (lower is better) Translates to: ISSQCSLAPVSEEGSVGGRWSPG*ATCGGR Trigger: ACGTCCCCCACATGTCGCCCAACCCGGGCTCCACCT...TCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR GCA 90 bp | ATTTCTTCACAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGAAGGGCACAGGGCTGCTaGTGCTGTCCGGCCCATAGT | + |
|
Preference number: 4 (lower is better) Translates to: ISSQCSLAPVSEEGSVGGRAQGC*CCPAHS Trigger: ACTATGGGCCGGACAGCAGCAGCAGCCCTGTGCCCT...TCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR GCA 90 bp | GTAGTCACCTCCTCTGTCTGTCGCTCTTCTGGGATATTAGCTTTCGAAAGGTTTGAAGACATGCTGGGGTaGAGACCAGCAGAGGCCGCG | + |
|
Preference number: 4 (lower is better) Translates to: VVTSSVCRSSGILAFERFEDMLG*RPAEAA Trigger: CGCGGCCTCTGCTGGTCTGCACCCCAGCATGTCTTC...AAACCTTTCGAAAGCTAATATCCCAGAAGAGCGACAGACAGAGGAGGTGACTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | ATATGTCTTACATGTAGTCACCTCCTCTGTCTGTCGCTCTTCTGGGATATTAGCGGGTTGGGCGACATGTaGGGGACGTGGTGGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: ICLTCSHLLCLSLFWDISGLGDM*GTWWWW Trigger: CCACCACCACCACGTCCCCCACATGTCGCCCAACCC...GCTAATATCCCAGAAGAGCGACAGACAGAGGAGGTGACTACATGTAAGACATAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | CTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGGGTGGAACCACTAGCGGAAGGGTaGAAAGAAGAAATGCCATTG | + |
|
Preference number: 4 (lower is better) Translates to: LWHLYPKKGVLGDWEWVEPLAEG*KEEMPL Trigger: CAATGGCATTTCTTCTTTCCACCCTTCCGCTAGTGG...TTCCACCCACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR TCA 90 bp | GGTATTTGTCTAAGTGATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCTGCTTGAGGTAAGGTaGAGCGCCAGGCGAGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GICLSDGCATYCYSLSSVLLEVR*SARRAP Trigger: TGGAGCTCGCCTGGCGCTTCACCTTACCTCAAGCAG...CACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAATACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR GCA 90 bp | ATTTGTCTAAGTGATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACAGGCGAGCTCCAATGTaGCGCAGGGCTAGTGTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ICLSDGCATYCYSLSSVHRRAPM*RRASVG Trigger: CCCTACACTAGCCCTGCGGCACATTGGAGCTCGCCT...GTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | ATTTGTCTAAGTGATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACATGGGTTTGAGAGCCTaGCACTTCCGCCTGAAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: ICLSDGCATYCYSLSSVHMGLRA*HFRLKP Trigger: CGGCTTCAGGCGGAAGTGCCAGGCTCTCAAACCCAT...GTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATCACTTAGACAAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | ACATGTAGTCACCTCCTCTGTCTGTCGCTCTTCTGGGATATTAGCTTTCGAAAGAGTAGGAAGACATGCTaGGGTGCAGACCAGCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TCSHLLCLSLFWDISFRKSRKTC*GADQQR Trigger: CCTCTGCTGGTCTGCACCCCAGCATGTCTTCCTACT...CTTTCGAAAGCTAATATCCCAGAAGAGCGACAGACAGAGGAGGTGACTACATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | AAAGTTTTATGTCCTCCACACAGTAACATATGTCTTACATGTAGTCACCTCCTCAGCTGGCCATATAGGTaGAGCCCGGGTTGGGCGACA | + |
|
Preference number: 4 (lower is better) Translates to: KVLCPPHSNICLTCSHLLSWPYR*SPGWAT Trigger: TGTCGCCCAACCCGGGCTCCACCTATATGGCCAGCT...GAGGAGGTGACTACATGTAAGACATATGTTACTGTGTGGAGGACATAAAACTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CCA 90 bp | AAAGTTTTATGTCCTCCACACAGTAACATATGTCTTACATGTAGTCACCTCCTCCCGCTCACCACGCGATaGTACATGGGTTTGAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: KVLCPPHSNICLTCSHLLPLTTR*YMGLRA Trigger: GGCTCTCAAACCCATGTACCATCGCGTGGTGAGCGG...GAGGAGGTGACTACATGTAAGACATATGTTACTGTGTGGAGGACATAAAACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| 3UTR CAA 72 bp | CTAGACTATCGGTTCTTCATTTCTTCACAATGTTCTTaGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LDYRFFISSQCS*APVSEEGSVGG Trigger: TCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTGTGAAGAAATGAAGAACCGATAGTCTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS GCA 90 bp | GCTGCTGTCCGGCCCATAGTCCCCGCCGCCACCGCCGCCACCCGCTaGCGCACCGACGCCCGCAGGACCTGCGGGCACCGGGCAGCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: AAVRPIVPAATAATR*RTDARRTCGHRAAG Trigger: GCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGCGTCGGTGCGGCAGCGGGTGGCGGCGGTGGCGGCGGGGACTATGGGCCGGACAGCAGC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS GCA 90 bp | GCCGCCACCGCCGCCACCCGCTGCCGCACCGACGCCCGCAGGACCTaGGGGCACCGGGCAGCTGGCCATATAGGTGGAGCCCGGGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: AATAATRCRTDARRT*GHRAAGHIGGARVG Trigger: CCCAACCCGGGCTCCACCTATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGCGTCGGTGCGGCAGCGGGTGGCGGCGGTGGCGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 90 bp | CCGCTGCCGCACCGACGCCCGCAGGACCTGCGGGCACCGGGCAGCTaGCCATATAGGTGGAGCCCGGGTTGGGCGACATGTGGGGGACGT | + |
|
Preference number: 5 (lower is better) Translates to: PLPHRRPQDLRAPGS*PYRWSPGWATCGGR Trigger: ACGTCCCCCACATGTCGCCCAACCCGGGCTCCACCTATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGCGTCGGTGCGGCAGCGG 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 90 bp | TGGCAACCCAGAGGCGCCGACGGGGGCGCTTGGAAGTCGAAGCCCTaGGGCAGCAGCGAGGCCCCGAAGCCCAAGCCGCTCACCACGCGA | + |
|
Preference number: 5 (lower is better) Translates to: WQPRGADGGAWKSKP*GSSEAPKPKPLTTR Trigger: TCGCGTGGTGAGCGGCTTGGGCTTCGGGGCCTCGCTGCTGCCCCAGGGCTTCGACTTCCAAGCGCCCCCGTCGGCGCCTCTGGGTTGCCA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 90 bp | CGACGCCCGCAGGACCTGCGGGCACCGGGCAGCTGGCCATATAGGTaGAGCCCGGGTTGGGCGACATGTGGGGGACGTGGTGGTGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: RRPQDLRAPGSWPYR*SPGWATCGGRGGGG Trigger: TCCACCACCACCACGTCCCCCACATGTCGCCCAACCCGGGCTCCACCTATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGCGTCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS TCA 90 bp | CAGAGGCCGCGGGATTACTGCTTGGCGTCAGGGCAGGCGGCTGCTTaGGGTAAGGTGAAGCGCCAGGCGAGCTCCAATGTGCCGCAGGGC | + |
|
Preference number: 5 (lower is better) Translates to: QRPRDYCLASGQAAA*GKVKRQASSNVPQG Trigger: GCCCTGCGGCACATTGGAGCTCGCCTGGCGCTTCACCTTACCTCAAGCAGCCGCCTGCCCTGACGCCAAGCAGTAATCCCGCGGCCTCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 90 bp | AGGACGAGGCACAGGAGGCAGAGGATGATGATGACGACGACGAAGTaGACTCCAGGGTGGCGGCGGGTGGCGGGCTCATCAAGGCGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: RTRHRRQRMMMTTTK*TPGWRRVAGSSRRP Trigger: AGGCCGCCTTGATGAGCCCGCCACCCGCCGCCACCCTGGAGTCCACTTCGTCGTCGTCATCATCATCCTCTGCCTCCTGTGCCTCGTCCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS TCA 90 bp | GGGATTACTGCTTGGCGTCAGGGCAGGCGGCTGCTTGAGGTAAGGTaGAGCGCCAGGCGAGCTCCAATGTGCCGCAGGGCTAGTGTAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GITAWRQGRRLLEVR*SARRAPMCRRASVG Trigger: CCCTACACTAGCCCTGCGGCACATTGGAGCTCGCCTGGCGCTTCACCTTACCTCAAGCAGCCGCCTGCCCTGACGCCAAGCAGTAATCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CAA 90 bp | CGTGCACAGTGTGAGTCCGTTGCAGTTCCTGGCTGCCCCTCTCGGAGGGGAGAGCGATGGTACATGGGTTaGAGAGCCTGGCACTTCCGC | + |
|
Preference number: 5 (lower is better) Translates to: RAQCESVAVPGCPSRRGERWYMG*RAWHFR Trigger: GCGGAAGTGCCAGGCTCTCAAACCCATGTACCATCG...CTCTCCCCTCCGAGAGGGGCAGCCAGGAACTGCAACGGACTCACACTGTGCACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CAA 90 bp | GATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACAGTGTGAGTCCGCGCCGACGGGGGCGCTaGGAAGTCGAAGCCCTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: DGCATYCYSLSSVHSVSPRRRGR*EVEALG Trigger: CCCCAGGGCTTCGACTTCCAAGCGCCCCCGTCGGCG...CGGACTCACACTGTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS GCA 90 bp | GGGCGTTCTGGTGCAAGTAGCTCTGCTCCAACGAGTAGGAAGACATaGTGGGGTGCAGACCAGCAGAGGCCGCGGGATTACTGCTTGGCG | + |
|
Preference number: 5 (lower is better) Translates to: GRSGASSSAPTSRKT*WGADQQRPRDYCLA Trigger: CGCCAAGCAGTAATCCCGCGGCCTCTGCTGGTCTGCACCCCAGCATGTCTTCCTACTCGTTGGAGCAGAGCTACTTGCACCAGAACGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CAA 90 bp | GATGGGTGTGCTACTTACTGCTATTCGCTATCCAGCGTGCACAGTGTGAGTCCGCCCGAGGTTGCCTTCTaGGTGCCTCCACTCCCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: DGCATYCYSLSSVHSVSPPEVAF*VPPLPA Trigger: CGCCGGGAGTGGAGGCACCAAGAAGGCAACCTCGGG...CGGACTCACACTGTGCACGCTGGATAGCGAATAGCAGTAAGTAGCACACCCATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CAA 90 bp | CAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGCCGCGGGATTACTGCTaGGCGTCAGGGCAGGCGGCT | + |
|
Preference number: 5 (lower is better) Translates to: QCSLAPVSEEGSVGGLGVPRDYC*ASGQAA Trigger: AGCCGCCTGCCCTGACGCCAAGCAGTAATCCCGCGG...CACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 90 bp | CGTTCTGGTGCAAGTAGCTCTGCTCCAACGAGTAGGAAGACATGCTaGGGTGCAGACCAGCAGAGGCCGCGGGATTACTGCTTGGCGTCA | + |
|
Preference number: 5 (lower is better) Translates to: RSGASSSAPTSRKTC*GADQQRPRDYCLAS Trigger: TGACGCCAAGCAGTAATCCCGCGGCCTCTGCTGGTCTGCACCCCAGCATGTCTTCCTACTCGTTGGAGCAGAGCTACTTGCACCAGAACG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS-3UTR CAA 90 bp | CAATGTTCTTTGGCACCTGTATCCGAAGAAGGGAGTGTTGGGGGACTGGGAGTGACAGGGCTTAATATCTaGGCACACGCTCTGGTGATG | + |
|
Preference number: 5 (lower is better) Translates to: QCSLAPVSEEGSVGGLGVTGLNI*AHALVM Trigger: CATCACCAGAGCGTGTGCCAAGATATTAAGCCCTGT...CACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTGCCAAAGAACATTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS GCA 72 bp | GCCGCCACCCGCTGCCGCACCGACGCCCGCAGGACCTaGGGGCACCGGGCAGCTGGCCATATAGGTGGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: AATRCRTDARRT*GHRAAGHIGGA Trigger: GGCTCCACCTATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGCGTCGGTGCGGCAGCGGGTGGCGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS GCA 72 bp | GTAAGGAGGCTTCTCCGGCCGCCGCAGCCCCGAGGTTaGCTTCTTGGTGCCTCCACTCCCGGCGCCCGCGCC | + |
|
Preference number: 6 (lower is better) Translates to: VRRLLRPPQPRG*LLGASTPGARA Trigger: GGCGCGGGCGCCGGGAGTGGAGGCACCAAGAAGGCAACCTCGGGGCTGCGGCGGCCGGAGAAGCCTCCTTAC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | AGAGGCGCCGACGGGGGCGCTTGGAAGTCGAAGCCCTaGGGCAGCAGCGAGGCCCCGAAGCCCAAGCCGCTC | + |
|
Preference number: 6 (lower is better) Translates to: RGADGGAWKSKP*GSSEAPKPKPL Trigger: GAGCGGCTTGGGCTTCGGGGCCTCGCTGCTGCCCCAGGGCTTCGACTTCCAAGCGCCCCCGTCGGCGCCTCT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CAA 72 bp | CTCCCGGCGCCCGCGCCGCCGCTGCTAGCCGCACTCTaGCAAGCACCGGCCGAGGCGCTGACGGAGTTAGAA | + |
|
Preference number: 6 (lower is better) Translates to: LPAPAPPLLAAL*QAPAEALTELE Trigger: TTCTAACTCCGTCAGCGCCTCGGCCGGTGCTTGCAAGAGTGCGGCTAGCAGCGGCGGCGCGGGCGCCGGGAG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CAA 72 bp | AGTAAGGAGGCTTCTCCGGCCGCCGCAGCCCCGAGGTaGCCTTCTTGGTGCCTCCACTCCCGGCGCCCGCGC | + |
|
Preference number: 6 (lower is better) Translates to: SKEASPAAAAPR*PSWCLHSRRPR Trigger: GCGCGGGCGCCGGGAGTGGAGGCACCAAGAAGGCAACCTCGGGGCTGCGGCGGCCGGAGAAGCCTCCTTACT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CAA 72 bp | TTGACCGTGGCAACCCAGAGGCGCCGACGGGGGCGCTaGGAAGTCGAAGCCCTGGGGCAGCAGCGAGGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: LTVATQRRRRGR*EVEALGQQRGP Trigger: GGGGCCTCGCTGCTGCCCCAGGGCTTCGACTTCCAAGCGCCCCCGTCGGCGCCTCTGGGTTGCCACGGTCAA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CAA 72 bp | GCCCGCGGGCATCATGTCGAGGCCACCATAACCGCCTaGACCGTGGCAACCCAGAGGCGCCGACGGGGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: ARGHHVEATITA*TVATQRRRRGR Trigger: GCGCCCCCGTCGGCGCCTCTGGGTTGCCACGGTCAAGGCGGTTATGGTGGCCTCGACATGATGCCCGCGGGC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | CACCGACGCCCGCAGGACCTGCGGGCACCGGGCAGCTaGCCATATAGGTGGAGCCCGGGTTGGGCGACATGT | + |
|
Preference number: 6 (lower is better) Translates to: HRRPQDLRAPGS*PYRWSPGWATC Trigger: ACATGTCGCCCAACCCGGGCTCCACCTATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGCGTCGGTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | CAGGACCTGCGGGCACCGGGCAGCTGGCCATATAGGTaGAGCCCGGGTTGGGCGACATGTGGGGGACGTGGT | + |
|
Preference number: 6 (lower is better) Translates to: QDLRAPGSWPYR*SPGWATCGGRG Trigger: ACCACGTCCCCCACATGTCGCCCAACCCGGGCTCCACCTATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | AGGATGATGATGACGACGACGAAGTGGACTCCAGGGTaGCGGCGGGTGGCGGGCTCATCAAGGCGGCCTGGA | + |
|
Preference number: 6 (lower is better) Translates to: RMMMTTTKWTPG*RRVAGSSRRPG Trigger: TCCAGGCCGCCTTGATGAGCCCGCCACCCGCCGCCACCCTGGAGTCCACTTCGTCGTCGTCATCATCATCCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | AGCGAGGCCCCGAAGCCCAAGCCGCTCACCACGCGATaGTACATGGGTTTGAGAGCCTGGCACTTCCGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: SEAPKPKPLTTR*YMGLRAWHFRL Trigger: CAGGCGGAAGTGCCAGGCTCTCAAACCCATGTACCATCGCGTGGTGAGCGGCTTGGGCTTCGGGGCCTCGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CAA 90 bp | TGTATCATAGCCCGCGGGCATCATGTCGAGGCCACCATAACCGCCTaGACCGTGGCAACCCAGAGGCGCCGACGGGGGCGCTTGGAAGTC | + |
|
Preference number: 6 (lower is better) Translates to: CIIARGHHVEATITA*TVATQRRRRGRLEV Trigger: GACTTCCAAGCGCCCCCGTCGGCGCCTCTGGGTTGCCACGGTCAAGGCGGTTATGGTGGCCTCGACATGATGCCCGCGGGCTATGATACA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | CACAGGAGGCAGAGGATGATGATGACGACGACGAAGTaGACTCCAGGGTGGCGGCGGGTGGCGGGCTCATCA | + |
|
Preference number: 6 (lower is better) Translates to: HRRQRMMMTTTK*TPGWRRVAGSS Trigger: TGATGAGCCCGCCACCCGCCGCCACCCTGGAGTCCACTTCGTCGTCGTCATCATCATCCTCTGCCTCCTGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS TCA 72 bp | CGGGATTACTGCTTGGCGTCAGGGCAGGCGGCTGCTTaGGGTAAGGTGAAGCGCCAGGCGAGCTCCAATGTG | + |
|
Preference number: 6 (lower is better) Translates to: RDYCLASGQAAA*GKVKRQASSNV Trigger: CACATTGGAGCTCGCCTGGCGCTTCACCTTACCTCAAGCAGCCGCCTGCCCTGACGCCAAGCAGTAATCCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | GCAAGTAGCTCTGCTCCAACGAGTAGGAAGACATGCTaGGGTGCAGACCAGCAGAGGCCGCGGGATTACTGC | + |
|
Preference number: 6 (lower is better) Translates to: ASSSAPTSRKTC*GADQQRPRDYC Trigger: GCAGTAATCCCGCGGCCTCTGCTGGTCTGCACCCCAGCATGTCTTCCTACTCGTTGGAGCAGAGCTACTTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||
| CDS CCA 72 bp | ATTGAAATTGAGGACGAAATCTTTCCTGTCGCACACTaGAGTGGAGTGGTGCTGGTAACGGGGCAGTCCGAC | + |
|
Preference number: 6 (lower is better) Translates to: IEIEDEIFPVAH*SGVVLVTGQSD Trigger: GTCGGACTGCCCCGTTACCAGCACCACTCCACTCCAGTGTGCGACAGGAAAGATTTCGTCCTCAATTTCAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042054.3 |
||