Pregenerated sensors for FOXE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070990Ensembl transcript IDs: ENSMUST00000095097.3
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCCTAGGGCCCTCCCTAGTAGAACTGCAGAAAGTCATGCTCTTTaGAGTTTCGCGTCATCGAGGGTCCTTTGTGTCAGGCCAAACGCG | + |
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Preference number: 1 (lower is better) Translates to: QPRALPSRTAESHAL*SFASSRVLCVRPNA Trigger: CGCGTTTGGCCTGACACAAAGGACCCTCGATGACGCGAAACTCCAAAGAGCATGACTTTCTGCAGTTCTACTAGGGAGGGCCCTAGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR CCA 90 bp | AAATACCAATTTACCAATGATCTGATCCCATTCCTGGATGGCCTTTaGACATTAGTGGCTACTGGGAAGCCCTGGGTGGCTCACCAATGC | + |
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Preference number: 1 (lower is better) Translates to: KYQFTNDLIPFLDGL*TLVATGKPWVAHQC Trigger: GCATTGGTGAGCCACCCAGGGCTTCCCAGTAGCCACTAATGTCCAAAGGCCATCCAGGAATGGGATCAGATCATTGGTAAATTGGTATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR-3UTR CCA 90 bp | GGCACAATCTCTACTTGGAGTCAGTCCTGGGACTTTGGAGTAAATACCAATTTACTGGGAAGCCCTGGGTaGCTCACCAATGCTGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: GTISTWSQSWDFGVNTNLLGSPG*LTNAAK Trigger: TTTGGCAGCATTGGTGAGCCACCCAGGGCTTCCCAG...TAAATTGGTATTTACTCCAAAGTCCCAGGACTGACTCCAAGTAGAGATTGTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR-3UTR GCA 90 bp | CTTTGGAGTAAATACCAATTTACCAATGATCTGATCCCATTCCTGGATGGCCTTTGGGTGGCTCACCAATaGTGCCAAATATGGAAGGTA | + |
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Preference number: 2 (lower is better) Translates to: LWSKYQFTNDLIPFLDGLWVAHQ*CQIWKV Trigger: TACCTTCCATATTTGGCAGCATTGGTGAGCCACCCA...AAGGCCATCCAGGAATGGGATCAGATCATTGGTAAATTGGTATTTACTCCAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR-3UTR CCA 90 bp | GGCACAATCTCTACTTGGAGTCAGTCCTGGGACTTTGGAGTAAATACCAATTTATCACACAGTTCTGTATaGCAGACTAAAAATTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: GTISTWSQSWDFGVNTNLSHSSV*QTKNSG Trigger: ACCTGAATTTTTAGTCTGCCATACAGAACTGTGTGA...TAAATTGGTATTTACTCCAAAGTCCCAGGACTGACTCCAAGTAGAGATTGTGCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR-3UTR TCA 90 bp | AATAAGAGGGTAGAATCACACAGTTCTGTATGGCAGACTAAAAATTCAGGTGTTAAGAATTCTCAGTTATaGTTGAGACCCAGGCTTGTG | + |
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Preference number: 2 (lower is better) Translates to: NKRVESHSSVWQTKNSGVKNSQL*LRPRLV Trigger: CACAAGCCTGGGTCTCAATCATAACTGAGAATTCTT...AACACCTGAATTTTTAGTCTGCCATACAGAACTGTGTGATTCTACCCTCTTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR CCA 72 bp | TTTACCAATGATCTGATCCCATTCCTGGATGGCCTTTaGACATTAGTGGCTACTGGGAAGCCCTGGGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: FTNDLIPFLDGL*TLVATGKPWVA Trigger: AGCCACCCAGGGCTTCCCAGTAGCCACTAATGTCCAAAGGCCATCCAGGAATGGGATCAGATCATTGGTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR TCA 72 bp | TGTTGGGGCTGGATCACACCGAAGAATTCTCAGTTATaGTTGAGACCCAGGCTTGTGATTCTCCGAGACAGA | + |
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Preference number: 3 (lower is better) Translates to: CWGWITPKNSQL*LRPRLVILRDR Trigger: TCTGTCTCGGAGAATCACAAGCCTGGGTCTCAATCATAACTGAGAATTCTTCGGTGTGATCCAGCCCCAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR TCA 72 bp | ATCAGAAAATCCGATTTTTCACTGAGCGGTCACTGCTaGAGAATGACCAACACATCCCTCTCTCTCTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: IRKSDFSLSGHC*RMTNTSLSLSL Trigger: CAGAGAGAGAGAGAGGGATGTGTTGGTCATTCTTCAGCAGTGACCGCTCAGTGAAAAATCGGATTTTCTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR CCA 72 bp | GGGCACAATCTCTACTTGGAGTCAGTCCTGGGACTTTaGAGTAAATACCAATTTACCAATGATCTGATCCCA | + |
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Preference number: 3 (lower is better) Translates to: GHNLYLESVLGL*SKYQFTNDLIP Trigger: TGGGATCAGATCATTGGTAAATTGGTATTTACTCCAAAGTCCCAGGACTGACTCCAAGTAGAGATTGTGCCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS-3UTR GCA 90 bp | CCTACGTCCGCCCACGTCCAAATCGGGGCTGTGAACAGTGCAAGACACCGAGCCGCACTGCTCGCTCCTTaGGGGTACGCGCCGTCGGGG | + |
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Preference number: 4 (lower is better) Translates to: PTSAHVQIGAVNSARHRAALLAP*GYAPSG Trigger: CCCCGACGGCGCGTACCCGCAAGGAGCGAGCAGTGC...GGCTCGGTGTCTTGCACTGTTCACAGCCCCGATTTGGACGTGGGCGGACGTAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS-3UTR GCA 90 bp | CCTCCCTACGTCCGCCCACGTCCAAATCGGGGCTGTGAACAGTGCAAGACACCGACTGGCCCGGCGACGTaGGCCCGTAGAAGTCCACCG | + |
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Preference number: 4 (lower is better) Translates to: PPYVRPRPNRGCEQCKTPTGPAT*ARRSPP Trigger: CGGTGGACTTCTACGGGCGCACGTCGCCGGGCCAGT...CGGTGTCTTGCACTGTTCACAGCCCCGATTTGGACGTGGGCGGACGTAGGGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS-3UTR CCA 90 bp | CCTCCCTACGTCCGCCCACGTCCAAATCGGGGCTGTGAACAGTGCAAGACACCGACATGTCCTCGGCGTTaGGGTCGAGCGCCCAGTAAT | + |
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Preference number: 4 (lower is better) Translates to: PPYVRPRPNRGCEQCKTPTCPRR*GRAPSN Trigger: ATTACTGGGCGCTCGACCCCAACGCCGAGGACATGT...CGGTGTCTTGCACTGTTCACAGCCCCGATTTGGACGTGGGCGGACGTAGGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS-3UTR GCA 90 bp | TTCACTGAGCGGTCACTGCTGAAGAATGACCAACACATCCCTCTCTCTCTCTCTCGGCGCTCGGGCGCGTaGGCGATGGCCATAGCGATG | + |
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Preference number: 4 (lower is better) Translates to: FTERSLLKNDQHIPLSLSRRSGA*AMAIAM Trigger: CATCGCTATGGCCATCGCGCACGCGCCCGAGCGCCG...AGAGAGAGAGAGAGGGATGTGTTGGTCATTCTTCAGCAGTGACCGCTCAGTGAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| 3UTR CAA 72 bp | CACACAGTTCTGTATGGCAGACTAAAAATTCAGGTGTaGGGGCTGGATCACACCGAAGAATTCTCAGTTATG | + |
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Preference number: 4 (lower is better) Translates to: HTVLYGRLKIQV*GLDHTEEFSVM Trigger: CATAACTGAGAATTCTTCGGTGTGATCCAGCCCCAACACCTGAATTTTTAGTCTGCCATACAGAACTGTGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS TCA 90 bp | ACGCGCCGTCGGGGCCCGCGTAGGCGGCGGCATAGGCGGCGGGGTTaGCCGGCCGCGCTCCGGTGCACACCGCCGGCTGGAAGCTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: TRRRGPRRRRHRRRG*PAALRCTPPAGSSR Trigger: CCGGGAGCTTCCAGCCGGCGGTGTGCACCGGAGCGCGGCCGGTCAACCCCGCCGCCTATGCCGCCGCCTACGCGGGCCCCGACGGCGCGT 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS GCA 90 bp | AGGCCGGTCCGGCCAGGCGGCCCGCAGCAGCGGCGAAGAGCGCACTaGTCGCTCCTTGCGGGTACGCGCCGTCGGGGCCCGCGTAGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RPVRPGGPQQRRRAH*SLLAGTRRRGPRRR Trigger: CCGCCTACGCGGGCCCCGACGGCGCGTACCCGCAAGGAGCGAGCAGTGCGCTCTTCGCCGCTGCTGCGGGCCGCCTGGCCGGACCGGCCT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS CCA 90 bp | CCCCGGCGACGCGGCGGGGTAGTAGACCGGCGGAGGCGCGGCGAGTaGCGGCGCGTAGCCCGCATAGACGGCGCCCGGGTAAGCCGGCCT | + |
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Preference number: 5 (lower is better) Translates to: PRRRGGVVDRRRRGE*RRVARIDGARVSRP Trigger: AGGCCGGCTTACCCGGGCGCCGTCTATGCGGGCTACGCGCCGCCACTCGCCGCGCCTCCGCCGGTCTACTACCCCGCCGCGTCGCCGGGG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS GCA 90 bp | GATTGTAGCAGGGTCCCAGCGCCGCTCCGAACTGGCCCGGCGACGTaGGCCCGTAGAAGTCCACCGTGGCCTCCACGCCGCCGCTGCCGC | + |
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Preference number: 5 (lower is better) Translates to: DCSRVPAPLRTGPAT*ARRSPPWPPRRRCR Trigger: GCGGCAGCGGCGGCGTGGAGGCCACGGTGGACTTCTACGGGCGCACGTCGCCGGGCCAGTTCGGAGCGGCGCTGGGACCCTGCTACAATC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS-3UTR CAA 90 bp | CTTTGGAGTAAATACCAATTTACCAATGATCTGATCCCATTCCTGGATGGCCTTCGCACTGCTCGCTCCTaGCGGGTACGCGCCGTCGGG | + |
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Preference number: 5 (lower is better) Translates to: LWSKYQFTNDLIPFLDGLRTARS*RVRAVG Trigger: CCCGACGGCGCGTACCCGCAAGGAGCGAGCAGTGCG...AAGGCCATCCAGGAATGGGATCAGATCATTGGTAAATTGGTATTTACTCCAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS GCA 72 bp | CGGCCAGGCGGCCCGCAGCAGCGGCGAAGAGCGCACTaGTCGCTCCTTGCGGGTACGCGCCGTCGGGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: RPGGPQQRRRAH*SLLAGTRRRGP Trigger: CGGGCCCCGACGGCGCGTACCCGCAAGGAGCGAGCAGTGCGCTCTTCGCCGCTGCTGCGGGCCGCCTGGCCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS CAA 90 bp | GGCCAGGCGGCCCGCAGCAGCGGCGAAGAGCGCACTGCTCGCTCCTaGCGGGTACGCGCCGTCGGGGCCCGCGTAGGCGGCGGCATAGGC | + |
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Preference number: 6 (lower is better) Translates to: GQAARSSGEERTARS*RVRAVGARVGGGIG Trigger: GCCTATGCCGCCGCCTACGCGGGCCCCGACGGCGCGTACCCGCAAGGAGCGAGCAGTGCGCTCTTCGCCGCTGCTGCGGGCCGCCTGGCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS CCA 72 bp | CGCGGCGGGGTAGTAGACCGGCGGAGGCGCGGCGAGTaGCGGCGCGTAGCCCGCATAGACGGCGCCCGGGTA | + |
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Preference number: 6 (lower is better) Translates to: RGGVVDRRRRGE*RRVARIDGARV Trigger: TACCCGGGCGCCGTCTATGCGGGCTACGCGCCGCCACTCGCCGCGCCTCCGCCGGTCTACTACCCCGCCGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS CAA 72 bp | GCCCGCAGCAGCGGCGAAGAGCGCACTGCTCGCTCCTaGCGGGTACGCGCCGTCGGGGCCCGCGTAGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: ARSSGEERTARS*RVRAVGARVGG Trigger: GCCGCCTACGCGGGCCCCGACGGCGCGTACCCGCAAGGAGCGAGCAGTGCGCTCTTCGCCGCTGCTGCGGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS GCA 72 bp | GTAGCCCGCATAGACGGCGCCCGGGTAAGCCGGCCTTaGGGCAGGCACGGCGCCCGGGAAGATGGCGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: VARIDGARVSRP*GRHGAREDGGS Trigger: GCTGCCGCCATCTTCCCGGGCGCCGTGCCTGCCGCAAGGCCGGCTTACCCGGGCGCCGTCTATGCGGGCTAC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS GCA 72 bp | AGGGTCCCAGCGCCGCTCCGAACTGGCCCGGCGACGTaGGCCCGTAGAAGTCCACCGTGGCCTCCACGCCGC | + |
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Preference number: 6 (lower is better) Translates to: RVPAPLRTGPAT*ARRSPPWPPRR Trigger: GCGGCGTGGAGGCCACGGTGGACTTCTACGGGCGCACGTCGCCGGGCCAGTTCGGAGCGGCGCTGGGACCCT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS CAA 72 bp | CGTAGCCCGCATAGACGGCGCCCGGGTAAGCCGGCCTaGCGGCAGGCACGGCGCCCGGGAAGATGGCGGCAG | + |
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Preference number: 6 (lower is better) Translates to: RSPHRRRPGKPA*RQARRPGRWRQ Trigger: CTGCCGCCATCTTCCCGGGCGCCGTGCCTGCCGCAAGGCCGGCTTACCCGGGCGCCGTCTATGCGGGCTACG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS CCA 72 bp | CAGACACGAACCGATCCACCGCGCCGGGGTAGGCGGTaGCGTGGCGGGAGTGGTAGGCACCGCCACCACCGG | + |
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Preference number: 6 (lower is better) Translates to: QTRTDPPRRGRR*RGGSGRHRHHR Trigger: CCGGTGGTGGCGGTGCCTACCACTCCCGCCACGCCACCGCCTACCCCGGCGCGGTGGATCGGTTCGTGTCTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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| CDS GCA 72 bp | GAAGATGGCGGCAGCGGCAGCGGCGGCGGCAGCGGCTaGATCGTGCATGTAGGCCGGGTAGGTGGACAGGTC | + |
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Preference number: 6 (lower is better) Translates to: EDGGSGSGGGSG*IVHVGRVGGQV Trigger: GACCTGTCCACCTACCCGGCCTACATGCACGATGCAGCCGCTGCCGCCGCCGCTGCCGCTGCCGCCATCTTC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095097.3 |
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