Pregenerated sensors for FOXD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051490Ensembl transcript IDs: ENSMUST00000058600.4
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACTCCGCTGCTGGCTTTCTACGCACAAGCCTAGCAGGCGGGTGGTaGAAACCTAGAAAGTGGTTCCATTTTGCCACTTGGCTCCAGGTG | + |
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Preference number: 1 (lower is better) Translates to: HSAAGFLRTSLAGGW*KPRKWFHFATWLQV Trigger: CACCTGGAGCCAAGTGGCAAAATGGAACCACTTTCTAGGTTTGCACCACCCGCCTGCTAGGCTTGTGCGTAGAAAGCCAGCAGCGGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR CCA 90 bp | CCCACTTTTGTGTTGTCAAGCGAGCAGAACACATTTGTAACAATTTaGAAGGACTTAGTGCGCACTCCGCTGCTGGCTTTCTACGCACAA | + |
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Preference number: 1 (lower is better) Translates to: PTFVLSSEQNTFVTI*KDLVRTPLLAFYAQ Trigger: TTGTGCGTAGAAAGCCAGCAGCGGAGTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCTTGACAACACAAAAGTGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR-3UTR CCA 90 bp | GTGTTGTCAAGCGAGCAGAACACATTTGTAACAATTTGGAAGGACTTAGTGCGCCAAGGCGACCCAGCCTaGAGGCTGGGCCTGGGTGCT | + |
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Preference number: 2 (lower is better) Translates to: VLSSEQNTFVTIWKDLVRQGDPA*RLGLGA Trigger: AGCACCCAGGCCCAGCCTCCAGGCTGGGTCGCCTTG...GCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCTTGACAACAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR CAA 90 bp | TCCCACTTTTGTGTTGTCAAGCGAGCAGAACACATTTGTAACAATTaGGAAGGACTTAGTGCGCACTCCGCTGCTGGCTTTCTACGCACA | + |
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Preference number: 2 (lower is better) Translates to: SHFCVVKRAEHICNN*EGLSAHSAAGFLRT Trigger: TGTGCGTAGAAAGCCAGCAGCGGAGTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCTTGACAACACAAAAGTGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR-3UTR GCA 90 bp | GTTGTCAAGCGAGCAGAACACATTTGTAACAATTTGGAAGGACTTAGTGCGCACAAAGTGGTTCCATTTTaGCACTTGGCTCCAGGTGTG | + |
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Preference number: 2 (lower is better) Translates to: VVKRAEHICNNLEGLSAHKVVPF*HLAPGV Trigger: CACACCTGGAGCCAAGTGGCAAAATGGAACCACTTT...GTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCTTGACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR-3UTR GCA 90 bp | ACAAGACCAAGCAAGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAACTAGCAGGCGGGTGGTaGAAACCTAGAAAGTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: TRPSKTCRSRIFPLLCCQLAGGW*KPRKWF Trigger: GAACCACTTTCTAGGTTTGCACCACCCGCCTGCTAG...TTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCTTGCTTGGTCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR-3UTR CCA 90 bp | ACAAGACCAAGCAAGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAATTCCATTTTGCCACTTaGCTCCAGGTGTGCCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: TRPSKTCRSRIFPLLCCQFHFAT*LQVCQG Trigger: GCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAA...TTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCTTGCTTGGTCTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR-3UTR CCA 90 bp | TGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACATTTGTGCAAACCTAGAAAGTaGTTCCATTTTGCCACTTGG | + |
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Preference number: 2 (lower is better) Translates to: CRSRIFPLLCCQASRTHLCKPRK*FHFATW Trigger: CCAAGTGGCAAAATGGAACCACTTTCTAGGTTTGCA...CAAATGTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR GCA 72 bp | GCTGGCTTTCTACGCACAAGCCTAGCAGGCGGGTGGTaGAAACCTAGAAAGTGGTTCCATTTTGCCACTTGG | + |
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Preference number: 3 (lower is better) Translates to: AGFLRTSLAGGW*KPRKWFHFATW Trigger: CCAAGTGGCAAAATGGAACCACTTTCTAGGTTTGCACCACCCGCCTGCTAGGCTTGTGCGTAGAAAGCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR CCA 72 bp | ACAAGCCTAGCAGGCGGGTGGTGCAAACCTAGAAAGTaGTTCCATTTTGCCACTTGGCTCCAGGTGTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: TSLAGGWCKPRK*FHFATWLQVCQ Trigger: TTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTTTCTAGGTTTGCACCACCCGCCTGCTAGGCTTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR CCA 72 bp | GTGTTGTCAAGCGAGCAGAACACATTTGTAACAATTTaGAAGGACTTAGTGCGCACTCCGCTGCTGGCTTTC | + |
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Preference number: 3 (lower is better) Translates to: VLSSEQNTFVTI*KDLVRTPLLAF Trigger: GAAAGCCAGCAGCGGAGTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCTTGACAACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR-3UTR CAA 90 bp | AGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACGAAAGTGGTTCCATTTaGCCACTTGGCTCCAGGTGT | + |
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Preference number: 3 (lower is better) Translates to: RLVDPGFSHFCVVKRAEHESGSI*PLGSRC Trigger: ACACCTGGAGCCAAGTGGCAAAATGGAACCACTTTC...GTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CCA 90 bp | AAGTGGTTCCATTTTGCCACTTGGCTCCAGGTGTGCCAAGGCGACCCAGCCTGGGGGAGACGTGCAGGGTaGCGGGCACAGCGGGTGGAG | + |
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Preference number: 4 (lower is better) Translates to: KWFHFATWLQVCQGDPAWGRRAG*RAQRVE Trigger: CTCCACCCGCTGTGCCCGCCACCCTGCACGTCTCCC...CCAGGCTGGGTCGCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CCA 90 bp | AAAGTGGTTCCATTTTGCCACTTGGCTCCAGGTGTGCCAAGGCGACCCAGCCTGGGCGGGCACAGCGGGTaGAGGGAAAGGGCAGTGCGG | + |
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Preference number: 4 (lower is better) Translates to: KVVPFCHLAPGVPRRPSLGGHSG*RERAVR Trigger: CCGCACTGCCCTTTCCCTCCACCCGCTGTGCCCGCC...CAGGCTGGGTCGCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AAAGTGGTTCCATTTTGCCACTTGGCTCCAGGTGTGCCAAGGCGACCCAGCCTGGAAGCGGCCTGGGGGTaGAGCAGGCACGGTGGATGT | + |
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Preference number: 4 (lower is better) Translates to: KVVPFCHLAPGVPRRPSLEAAWG*SRHGGC Trigger: ACATCCACCGTGCCTGCTGCACCCCCAGGCCGCTTC...CAGGCTGGGTCGCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CCA 90 bp | AAACCGTGGAAGCCACAACCGAAGCGGACAAGACCAAGCAAGACTTGTAGATCCAAAGGGCAGTGCGGGTaGCCTCCCGAGGGCGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: KPWKPQPKRTRPSKTCRSKGQCG*PPEGGW Trigger: CCACCCGCCCTCGGGAGGCCACCCGCACTGCCCTTT...GGATCTACAAGTCTTGCTTGGTCTTGTCCGCTTCGGTTGTGGCTTCCACGGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CCA 90 bp | CTAGCAGGCGGGTGGTGCAAACCTAGAAAGTGGTTCCATTTTGCCACTTGGCTCAGCGGAGCAGGAGGCTaGGCTGGGAGACGTGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: LAGGWCKPRKWFHFATWLSGAGG*AGRRAG Trigger: CCCTGCACGTCTCCCAGCCCAGCCTCCTGCTCCGCT...GAGCCAAGTGGCAAAATGGAACCACTTTCTAGGTTTGCACCACCCGCCTGCTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AAGTGGTTCCATTTTGCCACTTGGCTCCAGGTGTGCCAAGGCGACCCAGCCTGGGCAAAGGACGGACTCTaGGCAGACCCAGTTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KWFHFATWLQVCQGDPAWAKDGL*ADPVPP Trigger: AGGAGGAACTGGGTCTGCGCAGAGTCCGTCCTTTGC...CCAGGCTGGGTCGCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AGCGAGCAGAACACATTTGTAACAATTTGGAAGGACTTAGTGCGCACTCCGCTGGGAGGGAAAGGGCAGTaGGGGTGGCCTCCCGAGGGC | + |
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Preference number: 4 (lower is better) Translates to: SEQNTFVTIWKDLVRTPLGGKGQ*GWPPEG Trigger: GCCCTCGGGAGGCCACCCGCACTGCCCTTTCCCTCC...CAGCGGAGTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| 3UTR CAA 72 bp | CAGGCGGGTGGTGCAAACCTAGAAAGTGGTTCCATTTaGCCACTTGGCTCCAGGTGTGCCAAGGCGACCCAG | + |
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Preference number: 4 (lower is better) Translates to: QAGGANLESGSI*PLGSRCAKATQ Trigger: CTGGGTCGCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTTTCTAGGTTTGCACCACCCGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR TCA 90 bp | AAAGTGGTTCCATTTTGCCACTTGGCTCCAGGTGTGCCAAGGCGACCCAGCCTGCAGCTAATGGCACAGTaGTGCTGTTCTTGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KVVPFCHLAPGVPRRPSLQLMAQ*CCSCCS Trigger: GCTGCAGCAAGAACAGCATCACTGTGCCATTAGCTG...CAGGCTGGGTCGCCTTGGCACACCTGGAGCCAAGTGGCAAAATGGAACCACTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACCTGGGCTGGGAGACGTaGAGGGTGGCGGGCACAGCG | + |
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Preference number: 4 (lower is better) Translates to: RLVDPGFSHFCVVKRAEHLGWET*RVAGTA Trigger: CGCTGTGCCCGCCACCCTGCACGTCTCCCAGCCCAG...GTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR TCA 90 bp | AGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACGGCGGGGCAGCGGGATaGGCTGCGAGGTTAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: RLVDPGFSHFCVVKRAEHGGAAG*AARLGC Trigger: ACAGCCTAACCTCGCAGCTCATCCCGCTGCCCCGCC...GTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AAGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACGGGCTCCGGGCCTCTaGAGGGATCGCTCCAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: KTCRSRIFPLLCCQASRTRAPGL*RDRSRH Trigger: GTGCCTGGAGCGATCCCTGCAGAGGCCCGGAGCCCG...TGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AGCGAGCAGAACACATTTGTAACAATTTGGAAGGACTTAGTGCGCACTCCGCTGTCAGCTGCAGGCTGTTaGCTCAGCAGCGCCGCAACG | + |
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Preference number: 4 (lower is better) Translates to: SEQNTFVTIWKDLVRTPLSAAGC*LSSAAT Trigger: CGTTGCGGCGCTGCTGAGGCAACAGCCTGCAGCTGA...CAGCGGAGTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AACCGTGGAAGCCACAACCGAAGCGGACAAGACCAAGCAAGACTTGTAGATCCATCCATCTTCCTCCTCTaGCAGCACGTCGATCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: NRGSHNRSGQDQARLVDPSIFLL*QHVDLH Trigger: GTGGAGATCGACGTGCTGGCAGAGGAGGAAGATGGA...TGGATCTACAAGTCTTGCTTGGTCTTGTCCGCTTCGGTTGTGGCTTCCACGGTT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CCA 90 bp | AGCGAGCAGAACACATTTGTAACAATTTGGAAGGACTTAGTGCGCACTCCGCTGGAGGTTAGGCTGTGGTaGGGCAGAGTAGCGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SEQNTFVTIWKDLVRTPLEVRLW*GRVAEQ Trigger: CTGCTCCGCTACTCTGCCCCACCACAGCCTAACCTC...CAGCGGAGTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | CTAGCAGGCGGGTGGTGCAAACCTAGAAAGTGGTTCCATTTTGCCACTTGGCTCTATTGTCCGGGAACCTaGGGACATGTGAAACAAAGG | + |
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Preference number: 4 (lower is better) Translates to: LAGGWCKPRKWFHFATWLYCPGT*GHVKQR Trigger: CCTTTGTTTCACATGTCCGCAGGTTCCCGGACAATA...GAGCCAAGTGGCAAAATGGAACCACTTTCTAGGTTTGCACCACCCGCCTGCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AGACCAAGCAAGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGCCTACCGTCGTCAGCTaGAGGCTGTTGCCTCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: RPSKTCRSRIFPLLCCQAPTVVS*RLLPQQ Trigger: CTGCTGAGGCAACAGCCTGCAGCTGACGACGGTAGG...CGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCTTGCTTGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CCA 90 bp | AGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACTCTCTCTCCCAAGGCTaGGAACCCAGTACGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RLVDPGFSHFCVVKRAEHSLSQG*EPSTGC Trigger: GCAGCCCGTACTGGGTTCCCAGCCTTGGGAGAGAGA...GTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR GCA 90 bp | AAGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACAGTGGTGCTCGGAACTTaGGGAGGAACCCGGAGGAGT | + |
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Preference number: 4 (lower is better) Translates to: KTCRSRIFPLLCCQASRTVVLGT*GGTRRS Trigger: ACTCCTCCGGGTTCCTCCGCAAGTTCCGAGCACCAC...TGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CCA 90 bp | AGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACCGAGTTCCAGAGCTCTaGTCTCTCTCCCAAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RLVDPGFSHFCVVKRAEHRVPEL*SLSQGW Trigger: CCAGCCTTGGGAGAGAGACCAGAGCTCTGGAACTCG...GTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR TCA 90 bp | ACAAGACCAAGCAAGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAATCCTCTTCTTCCGTCTaGTCTCCATCTTCCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: TRPSKTCRSRIFPLLCCQSSSSV*SPSSSS Trigger: AGAGGAGGAAGATGGAGATCAGACGGAAGAAGAGGA...TTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCTTGCTTGGTCTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CCA 90 bp | TGTAGGAGTACGGGGGTTTGGCGGGCTGCGGGCCGTCGGCTGTGGTaGTCGCCGGGGTCCGTGGTGCTCGGAACTTGCGGAGGAACCCGG | + |
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Preference number: 5 (lower is better) Translates to: CRSTGVWRAAGRRLW*SPGSVVLGTCGGTR Trigger: CCGGGTTCCTCCGCAAGTTCCGAGCACCACGGACCCCGGCGACCACCACAGCCGACGGCCCGCAGCCCGCCAAACCCCCGTACTCCTACA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CCA 90 bp | CGATGTAGGAGTACGGGGGTTTGGCGGGCTGCGGGCCGTCGGCTGTaGTGGTCGCCGGGGTCCGTGGTGCTCGGAACTTGCGGAGGAACC | + |
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Preference number: 5 (lower is better) Translates to: RCRSTGVWRAAGRRL*WSPGSVVLGTCGGT Trigger: GGTTCCTCCGCAAGTTCCGAGCACCACGGACCCCGGCGACCACCACAGCCGACGGCCCGCAGCCCGCCAAACCCCCGTACTCCTACATCG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CAA 90 bp | CTTGGCTCCAGGTGTGCCAAGGCGACCCAGCCTGGAGGCTGGGCCTGGGTGCTGCTGAGCGTCAGGCGCTaGTGCGGGCTCTGCAGGATG | + |
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Preference number: 5 (lower is better) Translates to: LGSRCAKATQPGGWAWVLLSVRR*CGLCRM Trigger: CATCCTGCAGAGCCCGCACAAGCGCCTGACGCTCAG...CAGCACCCAGGCCCAGCCTCCAGGCTGGGTCGCCTTGGCACACCTGGAGCCAAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CCA 90 bp | TTTGGCGGGCTGCGGGCCGTCGGCTGTGGTGGTCGCCGGGGTCCGTaGTGCTCGGAACTTGCGGAGGAACCCGGAGGAGTTACTCAGATC | + |
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Preference number: 5 (lower is better) Translates to: FGGLRAVGCGGRRGP*CSELAEEPGGVTQI Trigger: GATCTGAGTAACTCCTCCGGGTTCCTCCGCAAGTTCCGAGCACCACGGACCCCGGCGACCACCACAGCCGACGGCCCGCAGCCCGCCAAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CAA 90 bp | AAACCGTGGAAGCCACAACCGAAGCGGACAAGACCAAGCAAGACTTGTAGATCCCAGCGGCAGCGGCGGTaGCGGCTGCTGAGGCAATAT | + |
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Preference number: 5 (lower is better) Translates to: KPWKPQPKRTRPSKTCRSQRQRR*RLLRQY Trigger: ATATTGCCTCAGCAGCCGCAACCGCCGCTGCCGCTG...GGATCTACAAGTCTTGCTTGGTCTTGTCCGCTTCGGTTGTGGCTTCCACGGTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CAA 90 bp | AGCGAGCAGAACACATTTGTAACAATTTGGAAGGACTTAGTGCGCACTCCGCTGGTCAGCTGCAGGCTGTaGCCTCAGCAGCGCCGCAAC | + |
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Preference number: 5 (lower is better) Translates to: SEQNTFVTIWKDLVRTPLVSCRL*PQQRRN Trigger: GTTGCGGCGCTGCTGAGGCAACAGCCTGCAGCTGAC...CAGCGGAGTGCGCACTAAGTCCTTCCAAATTGTTACAAATGTGTTCTGCTCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS-3UTR CAA 90 bp | AGACTTGTAGATCCAGGATTTTCCCACTTTTGTGTTGTCAAGCGAGCAGAACACACAGTGATGCTGTTCTaGCTGCAGCGGCAGCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RLVDPGFSHFCVVKRAEHTVMLF*LQRQRR Trigger: CCGCCGCTGCCGCTGCAGCAAGAACAGCATCACTGT...GTGTTCTGCTCGCTTGACAACACAAAAGTGGGAAAATCCTGGATCTACAAGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CCA 72 bp | ACGGGGGTTTGGCGGGCTGCGGGCCGTCGGCTGTGGTaGTCGCCGGGGTCCGTGGTGCTCGGAACTTGCGGA | + |
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Preference number: 6 (lower is better) Translates to: TGVWRAAGRRLW*SPGSVVLGTCG Trigger: TCCGCAAGTTCCGAGCACCACGGACCCCGGCGACCACCACAGCCGACGGCCCGCAGCCCGCCAAACCCCCGT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CCA 72 bp | AGTACGGGGGTTTGGCGGGCTGCGGGCCGTCGGCTGTaGTGGTCGCCGGGGTCCGTGGTGCTCGGAACTTGC | + |
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Preference number: 6 (lower is better) Translates to: STGVWRAAGRRL*WSPGSVVLGTC Trigger: GCAAGTTCCGAGCACCACGGACCCCGGCGACCACCACAGCCGACGGCCCGCAGCCCGCCAAACCCCCGTACT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS GCA 72 bp | GTTACTCAGATCGCCGCAGTCCCCCGCGCTCCTCCCTaGAAGAGTGCGGGCTCCGGGCCTCTGCAGGGATCG | + |
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Preference number: 6 (lower is better) Translates to: VTQIAAVPRAPP*KSAGSGPLQGS Trigger: CGATCCCTGCAGAGGCCCGGAGCCCGCACTCTTGCAGGGAGGAGCGCGGGGGACTGCGGCGATCTGAGTAAC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS GCA 72 bp | GCACGGGTGACTCCGAGGCGGGGCAGCGGGATGAGCTaGGAGGTTAGGCTGTGGTGGGGCAGAGTAGCGGAG | + |
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Preference number: 6 (lower is better) Translates to: ARVTPRRGSGMS*EVRLWWGRVAE Trigger: CTCCGCTACTCTGCCCCACCACAGCCTAACCTCGCAGCTCATCCCGCTGCCCCGCCTCGGAGTCACCCGTGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CAA 90 bp | GTTCTTGCTGCAGCGGCAGCGGCGGTTGCGGCTGCTGAGGCAATATaGTCCGGGAACCTGCGGACATGTGAAACAAAGGGGAAGCGGCCT | + |
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Preference number: 6 (lower is better) Translates to: VLAAAAAAVAAAEAI*SGNLRTCETKGKRP Trigger: AGGCCGCTTCCCCTTTGTTTCACATGTCCGCAGGTTCCCGGACAATATTGCCTCAGCAGCCGCAACCGCCGCTGCCGCTGCAGCAAGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS GCA 72 bp | CGGTTGCGGCTGCTGAGGCAATATTGTCCGGGAACCTaGGGACATGTGAAACAAAGGGGAAGCGGCCTGGGG | + |
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Preference number: 6 (lower is better) Translates to: RLRLLRQYCPGT*GHVKQRGSGLG Trigger: CCCCAGGCCGCTTCCCCTTTGTTTCACATGTCCGCAGGTTCCCGGACAATATTGCCTCAGCAGCCGCAACCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CAA 90 bp | CACGCCTTTACCGGGAGCGCAGCTAATGGCACAGTGATGCTGTTCTaGCTGCAGCGGCAGCGGCGGTTGCGGCTGCTGAGGCAATATTGT | + |
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Preference number: 6 (lower is better) Translates to: HAFTGSAANGTVMLF*LQRQRRLRLLRQYC Trigger: ACAATATTGCCTCAGCAGCCGCAACCGCCGCTGCCGCTGCAGCAAGAACAGCATCACTGTGCCATTAGCTGCGCTCCCGGTAAAGGCGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS CCA 72 bp | TCCTCCTCTGCCAGCACGTCGATCTCCACCTCATCCTaGTCGGAACTTAGAGGACTGGGCGGTGGAGTGGAA | + |
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Preference number: 6 (lower is better) Translates to: SSSASTSISTSS*SELRGLGGGVE Trigger: TTCCACTCCACCGCCCAGTCCTCTAAGTTCCGACCAGGATGAGGTGGAGATCGACGTGCTGGCAGAGGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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| CDS GCA 72 bp | ATCCTCTTCTTCCGTCTGATCTCCATCTTCCTCCTCTaGCAGCACGTCGATCTCCACCTCATCCTGGTCGGA | + |
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Preference number: 6 (lower is better) Translates to: ILFFRLISIFLL*QHVDLHLILVG Trigger: TCCGACCAGGATGAGGTGGAGATCGACGTGCTGGCAGAGGAGGAAGATGGAGATCAGACGGAAGAAGAGGAT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058600.4 |
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