Pregenerated sensors for FOXD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067261Ensembl transcript IDs: ENSMUST00000087285.5
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CGGTTATCAGTTTTACCTGTACGGAAAGTTATTCCCAGCGGACGCGGGTTGAGTGGAAGAGCAGGCTGCTaGCAGAGGCCGCCGTCCGGC | + |
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Preference number: 2 (lower is better) Translates to: RLSVLPVRKVIPSGRGLSGRAGC*QRPPSG Trigger: GCCGGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCC...ACTCAACCCGCGTCCGCTGGGAATAACTTTCCGTACAGGTAAAACTGATAACCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| 3UTR-3UTR GCA 90 bp | CACAGTACTGAGAACACAGGCGCCGTCGGGGTGCATTTTTGGAAATTCGGTTATCCTGGAAGAGCAGGCTaGTGCCAGAGGCCGCCGTCC | + |
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Preference number: 2 (lower is better) Translates to: HSTENTGAVGVHFWKFGYPGRAG*CQRPPS Trigger: GGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGG...ATAACCGAATTTCCAAAAATGCACCCCGACGGCGCCTGTGTTCTCAGTACTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| 3UTR GCA 72 bp | AGGATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTaGTGCCAGAGGCCGCCGTCCGGCCCGGCCACTAGC | + |
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Preference number: 3 (lower is better) Translates to: RIREGVPPGRAG*CQRPPSGPATS Trigger: GCTAGTGGCCGGGCCGGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGATCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| 3UTR GCA 72 bp | ATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCTaGCAGAGGCCGCCGTCCGGCCCGGCCACTAGCTCA | + |
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Preference number: 3 (lower is better) Translates to: IREGVPPGRAGC*QRPPSGPATSS Trigger: TGAGCTAGTGGCCGGGCCGGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGAT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | AGGGCGTACCGCCTGGAAGAGCAGGCTGCTGCCAGAGGCCGCCGTCCGGCCCGGAGGTGCTCCTGCTGGTaGCGCTTGAAGCGCTTCCGG | + |
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Preference number: 4 (lower is better) Translates to: RAYRLEEQAAARGRRPARRCSCW*RLKRFR Trigger: CCGGAAGCGCTTCAAGCGCCACCAGCAGGAGCACCT...CCGGGCCGGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | TGGAGGCCGCTGTTGGTCAGTGTTGGGGAGTCGGGGGCGGGTAGCAGAGTCCAGCGAAGGCGGCCGCTTTaGGGCCCAGCTCGCCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: WRPLLVSVGESGAGSRVQRRRPL*GPARPR Trigger: CCTCGGGCGAGCTGGGCCGCAAAGCGGCCGCCTTCG...CTGGACTCTGCTACCCGCCCCCGACTCCCCAACACTGACCAACAGCGGCCTCCA 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR TCA 90 bp | ATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCTGCCAGAGGCCGCCGTCCGCTGGTGCGTGGCCATaGGCGCAGCCGACTGCACAG | + |
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Preference number: 4 (lower is better) Translates to: IREGVPPGRAGCCQRPPSAGAWP*AQPTAQ Trigger: CTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGC...GGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGAT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | TGGAGGCCGCTGTTGGTCAGTGTTGGGGAGTCGGGGGCGGGTAGCAGAGTCCAGAGGCTCGGACCGAGCTaGGAGCCGAAGGCGGCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: WRPLLVSVGESGAGSRVQRLGPS*EPKAAA Trigger: AGCGGCCGCCTTCGGCTCGCAGCTCGGTCCGAGCCT...CTGGACTCTGCTACCCGCCCCCGACTCCCCAACACTGACCAACAGCGGCCTCCA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | TCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCTGCCAGAGGCCGCCGTCCGGCCGTCAGCACCGTCTaGCCGGACATATCGCTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: SERAYRLEEQAAARGRRPAVSTV*PDISLA Trigger: CGCCAGCGATATGTCCGGCCAGACGGTGCTGACGGC...CGGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR TCA 90 bp | CCAGGACCAGGACCAGGACAGATGGACCAGGATCAGAGAGGGCGTACCGCCTGGCCTGCTGGTGGCGCTTaGAGCGCTTCCGGCGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: PGPGPGQMDQDQRGRTAWPAGGA*SASGAA Trigger: TGCGGCGCCGGAAGCGCTTCAAGCGCCACCAGCAGG...CCAGGCGGTACGCCCTCTCTGATCCTGGTCCATCTGTCCTGGTCCTGGTCCTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR TCA 90 bp | TGGAGGCCGCTGTTGGTCAGTGTTGGGGAGTCGGGGGCGGGTAGCAGAGTCCAGCGGCGCCCAGGGTGTTaGGCTGTAGCTGCAGGCTCG | + |
|
Preference number: 4 (lower is better) Translates to: WRPLLVSVGESGAGSRVQRRPGC*AVAAGS Trigger: CGAGCCTGCAGCTACAGCTCAACACCCTGGGCGCCG...CTGGACTCTGCTACCCGCCCCCGACTCCCCAACACTGACCAACAGCGGCCTCCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR TCA 90 bp | CCAGGACAGATGGACCAGGATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCGCAGCCGCTGCGGCTaGGGCTGCGGGCTGCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: PGQMDQDQRGRTAWKSRLRSRCG*GCGLQE Trigger: TTCCTGCAGCCCGCAGCCTCAGCCGCAGCGGCTGCG...CAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGATCCTGGTCCATCTGTCCTGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | TCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCTGCCAGAGGCCGCCGTCCGACATATCGCTGGCGCTaGCGCTGCCGGAGAGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: SERAYRLEEQAAARGRRPTYRWR*RCRRGS Trigger: TGACCCTCTCCGGCAGCGGCAGCGCCAGCGATATGT...CGGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | GTCAGTGTTGGGGAGTCGGGGGCGGGTAGCAGAGTCCAGGATTGGGTAGAGGGACGTCCTCGCCGCCCTTaGAGCCGTCGGCCTCCGGAG | + |
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Preference number: 4 (lower is better) Translates to: VSVGESGAGSRVQDWVEGRPRRP*SRRPPE Trigger: CTCCGGAGGCCGACGGCTGCAAGGGCGGCGAGGACG...TCCCTCTACCCAATCCTGGACTCTGCTACCCGCCCCCGACTCCCCAACACTGAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | CCAGGACCAGGACCAGGACAGATGGACCAGGATCAGAGAGGGCGTACCGCCTGGCTCAGCGACAGGGGCTaGTGCGTGGCCATGAGCGCA | + |
|
Preference number: 4 (lower is better) Translates to: PGPGPGQMDQDQRGRTAWLSDRG*CVAMSA Trigger: TGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAG...CCAGGCGGTACGCCCTCTCTGATCCTGGTCCATCTGTCCTGGTCCTGGTCCTGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | ATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCTGCCAGAGGCCGCCGTCCTCAGAATGGGCGCGATaGTGGCAGTCGTCCGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: IREGVPPGRAGCCQRPPSSEWAR*WQSSGS Trigger: TGAGCCGGACGACTGCCACCATCGCGCCCATTCTGA...GGACGGCGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGAT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | CCAGGACAGATGGACCAGGATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGGAATGGGCGCGATGGTaGCAGTCGTCCGGCTCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: PGQMDQDQRGRTAWKSRLEWARW*QSSGSA Trigger: CGCTGAGCCGGACGACTGCCACCATCGCGCCCATTC...CAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGATCCTGGTCCATCTGTCCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | CCAGGACAGATGGACCAGGATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGATCATCAGCGCCGTCTaGTCGCGCAGGTGCTCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: PGQMDQDQRGRTAWKSRLIISAV*SRRCSC Trigger: GCAGGAGCACCTGCGCGAGCAGACGGCGCTGATGAT...CAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGATCCTGGTCCATCTGTCCTGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | ACCTGTACGGAAAGTTATTCCCAGCGGACGCGGGTTGAGTTTGCTCCGCCAGCTAGCGCGTACGGGTACTaGAGCGCCGCAGCAGCCGCG | + |
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Preference number: 4 (lower is better) Translates to: TCTESYSQRTRVEFAPPASAYGY*SAAAAA Trigger: CGCGGCTGCTGCGGCGCTCCAGTACCCGTACGCGCT...AGCTGGCGGAGCAAACTCAACCCGCGTCCGCTGGGAATAACTTTCCGTACAGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | CCAGGATTGGGTAGAGGGACCAGGACCAGGACCAGGACAGATGGACCAGGATCAGCGGCACGCTCAGAATaGGCGCGATGGTGGCAGTCG | + |
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Preference number: 4 (lower is better) Translates to: PGLGRGTRTRTRTDGPGSAARSE*ARWWQS Trigger: CGACTGCCACCATCGCGCCCATTCTGAGCGTGCCGC...TGATCCTGGTCCATCTGTCCTGGTCCTGGTCCTGGTCCCTCTACCCAATCCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | CCAGGATTGGGTAGAGGGACCAGGACCAGGACCAGGACAGATGGACCAGGATCACGCAGGTGCTCCTGCTaGTGGCGCTTGAAGCGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: PGLGRGTRTRTRTDGPGSRRCSC*WRLKRF Trigger: GAAGCGCTTCAAGCGCCACCAGCAGGAGCACCTGCG...TGATCCTGGTCCATCTGTCCTGGTCCTGGTCCTGGTCCCTCTACCCAATCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | GTACGGAAAGTTATTCCCAGCGGACGCGGGTTGAGTTTGCTCCGCCAGCTTAGGGCTGAGGCTGCGGGCTaGAGGAACTGTCCAGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: VRKVIPSGRGLSLLRQLRAEAAG*RNCPDS Trigger: GCTGTCTGGACAGTTCCTGCAGCCCGCAGCCTCAGC...CCTAAGCTGGCGGAGCAAACTCAACCCGCGTCCGCTGGGAATAACTTTCCGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | ACAGTACTGAGAACACAGGCGCCGTCGGGGTGCATTTTTGGAAATTCGGTTATCAGCGACAGGGGCTGGTaGGTGGCCATGAGCGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TVLRTQAPSGCIFGNSVISDRGW*VAMSAA Trigger: GGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCT...GATAACCGAATTTCCAAAAATGCACCCCGACGGCGCCTGTGTTCTCAGTACTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR GCA 90 bp | ACAGTACTGAGAACACAGGCGCCGTCGGGGTGCATTTTTGGAAATTCGGTTATCTCGCGCAGGTGCTCCTaGTGGTGGCGCTTGAAGCGC | + |
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Preference number: 4 (lower is better) Translates to: TVLRTQAPSGCIFGNSVISRRCS*WWRLKR Trigger: GCGCTTCAAGCGCCACCAGCAGGAGCACCTGCGCGA...GATAACCGAATTTCCAAAAATGCACCCCGACGGCGCCTGTGTTCTCAGTACTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | ACCTGTACGGAAAGTTATTCCCAGCGGACGCGGGTTGAGTTTGCTCCGCCAGCTTCACCAGGCTGTTCTTaGGCTTGTTCGGGGTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: TCTESYSQRTRVEFAPPASPGCS*ACSGSD Trigger: GTCTGACCCCGAACAAGCCCAAGAACAGCCTGGTGA...AGCTGGCGGAGCAAACTCAACCCGCGTCCGCTGGGAATAACTTTCCGTACAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CCA 90 bp | CACAGTACTGAGAACACAGGCGCCGTCGGGGTGCATTTTTGGAAATTCGGTTATGATGTAAGAGTAGGGTaGCTTCACCAGGCTGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: HSTENTGAVGVHFWKFGYDVRVG*LHQAVL Trigger: AAGAACAGCCTGGTGAAGCCACCCTACTCTTACATC...ATAACCGAATTTCCAAAAATGCACCCCGACGGCGCCTGTGTTCTCAGTACTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 90 bp | CGCAGCCGCCGCGGGGTGCAGGCCGTAGGGGCGGCCGTAGGGTCCTaGGCCCGCCGCCGCCGCCAGGCTGTAGGCTCCGAAGCTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: RSRRGVQAVGAAVGS*ARRRRQAVGSEALH Trigger: ATGCAGAGCTTCGGAGCCTACAGCCTGGCGGCGGCGGCGGGCGCAGGACCCTACGGCCGCCCCTACGGCCTGCACCCCGCGGCGGCTGCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 90 bp | CGGCTCAGCGACAGGGGCTGGTGCGTGGCCATGAGCGCAGCCGACTaGACAGTCCCGGGCGGCCGCAGGAAGGACTGCGCGCCGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: RLSDRGWCVAMSAAD*TVPGGRRKDCAPPP Trigger: CGGCGGCGGCGCGCAGTCCTTCCTGCGGCCGCCCGGGACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAGCCG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 90 bp | GCGGCGCCCAGGGTGTTGAGCTGTAGCTGCAGGCTCGGACCGAGCTaGGAGCCGAAGGCGGCCGCTTTGCGGCCCAGCTCGCCCGAGGGC | + |
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Preference number: 5 (lower is better) Translates to: AAPRVLSCSCRLGPS*EPKAAALRPSSPEG Trigger: GCCCTCGGGCGAGCTGGGCCGCAAAGCGGCCGCCTTCGGCTCGCAGCTCGGTCCGAGCCTGCAGCTACAGCTCAACACCCTGGGCGCCGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 90 bp | ATGGGCGCGATGGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTGGTaGGTGGCCATGAGCGCAGCCGACTGCACAGTCCCGGGCGGCCGC | + |
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Preference number: 5 (lower is better) Translates to: MGAMVAVVRLSDRGW*VAMSAADCTVPGGR Trigger: GCGGCCGCCCGGGACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCAT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 90 bp | TGCCAGGGCTTGCGGTTGAGACTGGCCGTGATGAGCGCTCACCGGTaGCCCTTCGTCCGCCTCGTCCAGGCGCAGGTCCGGAGGCCCCGC | + |
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Preference number: 5 (lower is better) Translates to: CQGLRLRLAVMSAHR*PFVRLVQAQVRRPR Trigger: GCGGGGCCTCCGGACCTGCGCCTGGACGAGGCGGACGAAGGGCCACCGGTGAGCGCTCATCACGGCCAGTCTCAACCGCAAGCCCTGGCA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS TCA 90 bp | TGGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTGGTGCGTGGCCATaGGCGCAGCCGACTGCACAGTCCCGGGCGGCCGCAGGAAGGACT | + |
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Preference number: 5 (lower is better) Translates to: WWQSSGSATGAGAWP*AQPTAQSRAAAGRT Trigger: AGTCCTTCCTGCGGCCGCCCGGGACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 90 bp | AGAATGGGCGCGATGGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTaGTGCGTGGCCATGAGCGCAGCCGACTGCACAGTCCCGGGCGGC | + |
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Preference number: 5 (lower is better) Translates to: RMGAMVAVVRLSDRG*CVAMSAADCTVPGG Trigger: GCCGCCCGGGACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCATTCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CAA 90 bp | ACCAGGATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCTGCCAGAGGCCGCCGAAGGCGGCCGCTTaGCGGCCCAGCTCGCCCGAG | + |
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Preference number: 5 (lower is better) Translates to: TRIREGVPPGRAGCCQRPPKAAA*RPSSPE Trigger: CTCGGGCGAGCTGGGCCGCAAAGCGGCCGCCTTCGG...CGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGATCCTGGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 90 bp | GCTGCAGGAACTGTCCAGACAGCGGCACGCTCAGAATGGGCGCGATaGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTGGTGCGTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: AAGTVQTAARSEWAR*WQSSGSATGAGAWP Trigger: TGGCCACGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCATTCTGAGCGTGCCGCTGTCTGGACAGTTCCTGCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 90 bp | AGGCTGCGGGCTGCAGGAACTGTCCAGACAGCGGCACGCTCAGAATaGGCGCGATGGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: RLRAAGTVQTAARSE*ARWWQSSGSATGAG Trigger: ACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCATTCTGAGCGTGCCGCTGTCTGGACAGTTCCTGCAGCCCGCAGCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CAA 90 bp | GTCAGTGTTGGGGAGTCGGGGGCGGGTAGCAGAGTCCAGGATTGGGTAGAGGGAGCGGCGCCCAGGGTGTaGAGCTGTAGCTGCAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: VSVGESGAGSRVQDWVEGAAPRV*SCSCRL Trigger: GAGCCTGCAGCTACAGCTCAACACCCTGGGCGCCGC...TCCCTCTACCCAATCCTGGACTCTGCTACCCGCCCCCGACTCCCCAACACTGAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CAA 90 bp | ACCAGGATCAGAGAGGGCGTACCGCCTGGAAGAGCAGGCTGCTGCCAGAGGCCGAGGCTGTTCTTGGGCTaGTTCGGGGTCAGACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: TRIREGVPPGRAGCCQRPRLFLG*FGVRPP Trigger: GGGAGGTCTGACCCCGAACAAGCCCAAGAACAGCCT...CGGCCTCTGGCAGCAGCCTGCTCTTCCAGGCGGTACGCCCTCTCTGATCCTGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CAA 90 bp | CCAGGATTGGGTAGAGGGACCAGGACCAGGACCAGGACAGATGGACCAGGATCAGCACTGGGCTCGGACTaGATGAGCGACGTGGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: PGLGRGTRTRTRTDGPGSALGSD*MSDVVP Trigger: GGGCACCACGTCGCTCATCAAGTCCGAGCCCAGTGC...TGATCCTGGTCCATCTGTCCTGGTCCTGGTCCTGGTCCCTCTACCCAATCCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS-3UTR CAA 90 bp | CGGTTATCAGTTTTACCTGTACGGAAAGTTATTCCCAGCGGACGCGGGTTGAGTTCCTGCTGGTGGCGCTaGAAGCGCTTCCGGCGCCGC | + |
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Preference number: 5 (lower is better) Translates to: RLSVLPVRKVIPSGRGLSSCWWR*KRFRRR Trigger: GCGGCGCCGGAAGCGCTTCAAGCGCCACCAGCAGGA...ACTCAACCCGCGTCCGCTGGGAATAACTTTCCGTACAGGTAAAACTGATAACCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 72 bp | CGCGGGGTGCAGGCCGTAGGGGCGGCCGTAGGGTCCTaGGCCCGCCGCCGCCGCCAGGCTGTAGGCTCCGAA | + |
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Preference number: 6 (lower is better) Translates to: RGVQAVGAAVGS*ARRRRQAVGSE Trigger: TTCGGAGCCTACAGCCTGGCGGCGGCGGCGGGCGCAGGACCCTACGGCCGCCCCTACGGCCTGCACCCCGCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 72 bp | AGCACGGGAGCCACGGGTGGTAGCGCGTACGGGTACTaGAGCGCCGCAGCAGCCGCGGCCGCCGCCGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: STGATGGSAYGY*SAAAAAAAAAA Trigger: GGCGGCGGCGGCGGCCGCGGCTGCTGCGGCGCTCCAGTACCCGTACGCGCTACCACCCGTGGCTCCCGTGCT 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CAA 90 bp | TGTAGCTGCAGGCTCGGACCGAGCTGCGAGCCGAAGGCGGCCGCTTaGCGGCCCAGCTCGCCCGAGGGCAGCAGGGGCACTGCGGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: CSCRLGPSCEPKAAA*RPSSPEGSRGTAGG Trigger: GCCGCCCGCAGTGCCCCTGCTGCCCTCGGGCGAGCTGGGCCGCAAAGCGGCCGCCTTCGGCTCGCAGCTCGGTCCGAGCCTGCAGCTACA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 72 bp | GCCCACCGCCGCCTGTCACCGCGTCCTCGCCGCCCTTaGAGCCGTCGGCCTCCGGAGCTCCCGTGTCGTTCC | + |
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Preference number: 6 (lower is better) Translates to: AHRRLSPRPRRP*SRRPPELPCRS Trigger: GGAACGACACGGGAGCTCCGGAGGCCGACGGCTGCAAGGGCGGCGAGGACGCGGTGACAGGCGGCGGTGGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CAA 72 bp | GGCCCACCGCCGCCTGTCACCGCGTCCTCGCCGCCCTaGCAGCCGTCGGCCTCCGGAGCTCCCGTGTCGTTC | + |
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Preference number: 6 (lower is better) Translates to: GPPPPVTASSPP*QPSASGAPVSF Trigger: GAACGACACGGGAGCTCCGGAGGCCGACGGCTGCAAGGGCGGCGAGGACGCGGTGACAGGCGGCGGTGGGCC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 72 bp | GCTGCCGCGGCGGCGCCCAGGGTGTTGAGCTGTAGCTaGAGGCTCGGACCGAGCTGCGAGCCGAAGGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: AAAAAPRVLSCS*RLGPSCEPKAA Trigger: GGCCGCCTTCGGCTCGCAGCTCGGTCCGAGCCTGCAGCTACAGCTCAACACCCTGGGCGCCGCCGCGGCAGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CAA 72 bp | AGGCTCGGACCGAGCTGCGAGCCGAAGGCGGCCGCTTaGCGGCCCAGCTCGCCCGAGGGCAGCAGGGGCACT | + |
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Preference number: 6 (lower is better) Translates to: RLGPSCEPKAAA*RPSSPEGSRGT Trigger: AGTGCCCCTGCTGCCCTCGGGCGAGCTGGGCCGCAAAGCGGCCGCCTTCGGCTCGCAGCTCGGTCCGAGCCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS TCA 72 bp | TCGTCCGGCTCAGCGACAGGGGCTGGTGCGTGGCCATaGGCGCAGCCGACTGCACAGTCCCGGGCGGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: SSGSATGAGAWP*AQPTAQSRAAA Trigger: TGCGGCCGCCCGGGACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAGCCGGACGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 72 bp | GACAGGGGCTGGTGCGTGGCCATGAGCGCAGCCGACTaGACAGTCCCGGGCGGCCGCAGGAAGGACTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: DRGWCVAMSAAD*TVPGGRRKDCA Trigger: CGCGCAGTCCTTCCTGCGGCCGCCCGGGACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 72 bp | GCGGCGGCCGCAGCCGCTGCGGCTGAGGCTGCGGGCTaGAGGAACTGTCCAGACAGCGGCACGCTCAGAATG | + |
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Preference number: 6 (lower is better) Translates to: AAAAAAAAEAAG*RNCPDSGTLRM Trigger: CATTCTGAGCGTGCCGCTGTCTGGACAGTTCCTGCAGCCCGCAGCCTCAGCCGCAGCGGCTGCGGCCGCCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CAA 72 bp | CCCGGTCGCCTCGGTGGGCAGTGCCAGGGCTTGCGGTaGAGACTGGCCGTGATGAGCGCTCACCGGTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PGRLGGQCQGLR*RLAVMSAHRWP Trigger: GGGCCACCGGTGAGCGCTCATCACGGCCAGTCTCAACCGCAAGCCCTGGCACTGCCCACCGAGGCGACCGGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CAA 72 bp | TCGATGCTGAACGACGGCCGCGCACTGGGCTCGGACTaGATGAGCGACGTGGTGCCCGCCGCGCCCGCCGTG | + |
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Preference number: 6 (lower is better) Translates to: SMLNDGRALGSD*MSDVVPAAPAV Trigger: CACGGCGGGCGCGGCGGGCACCACGTCGCTCATCAAGTCCGAGCCCAGTGCGCGGCCGTCGTTCAGCATCGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CAA 90 bp | ATGATGTTCTCGATGCTGAACGACGGCCGCGCACTGGGCTCGGACTaGATGAGCGACGTGGTGCCCGCCGCGCCCGCCGTGCCCGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: MMFSMLNDGRALGSD*MSDVVPAAPAVPAA Trigger: AGCCGCGGGCACGGCGGGCGCGGCGGGCACCACGTCGCTCATCAAGTCCGAGCCCAGTGCGCGGCCGTCGTTCAGCATCGAGAACATCAT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 72 bp | AGGGTGTTGAGCTGTAGCTGCAGGCTCGGACCGAGCTaGGAGCCGAAGGCGGCCGCTTTGCGGCCCAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: RVLSCSCRLGPS*EPKAAALRPSS Trigger: CGAGCTGGGCCGCAAAGCGGCCGCCTTCGGCTCGCAGCTCGGTCCGAGCCTGCAGCTACAGCTCAACACCCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS GCA 72 bp | ATGGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTGGTaGGTGGCCATGAGCGCAGCCGACTGCACAGTCCCG | + |
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Preference number: 6 (lower is better) Translates to: MVAVVRLSDRGW*VAMSAADCTVP Trigger: CGGGACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCAT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 72 bp | TTGCGGTTGAGACTGGCCGTGATGAGCGCTCACCGGTaGCCCTTCGTCCGCCTCGTCCAGGCGCAGGTCCGG | + |
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Preference number: 6 (lower is better) Translates to: LRLRLAVMSAHR*PFVRLVQAQVR Trigger: CCGGACCTGCGCCTGGACGAGGCGGACGAAGGGCCACCGGTGAGCGCTCATCACGGCCAGTCTCAACCGCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 72 bp | GCGATGGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTaGTGCGTGGCCATGAGCGCAGCCGACTGCACAGTC | + |
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Preference number: 6 (lower is better) Translates to: AMVAVVRLSDRG*CVAMSAADCTV Trigger: GACTGTGCAGTCGGCTGCGCTCATGGCCACGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 72 bp | GTCCAGACAGCGGCACGCTCAGAATGGGCGCGATGGTaGCAGTCGTCCGGCTCAGCGACAGGGGCTGGTGCG | + |
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Preference number: 6 (lower is better) Translates to: VQTAARSEWARW*QSSGSATGAGA Trigger: CGCACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCATTCTGAGCGTGCCGCTGTCTGGAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 72 bp | ACTGTCCAGACAGCGGCACGCTCAGAATGGGCGCGATaGTGGCAGTCGTCCGGCTCAGCGACAGGGGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: TVQTAARSEWAR*WQSSGSATGAG Trigger: ACCAGCCCCTGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCATTCTGAGCGTGCCGCTGTCTGGACAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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| CDS CCA 72 bp | GCTGCAGGAACTGTCCAGACAGCGGCACGCTCAGAATaGGCGCGATGGTGGCAGTCGTCCGGCTCAGCGACA | + |
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Preference number: 6 (lower is better) Translates to: AAGTVQTAARSE*ARWWQSSGSAT Trigger: TGTCGCTGAGCCGGACGACTGCCACCATCGCGCCCATTCTGAGCGTGCCGCTGTCTGGACAGTTCCTGCAGC 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087285.5 |
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