Pregenerated sensors for FOXD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055210Ensembl transcript IDs: ENSMUST00000068654.5
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAGGCGCAAAGGCAAGACACAGAGAAGGTTCCTGCTCTCCTTTTTaGTGCTCAAACAGAAAAGCGGTCTCCGCTTTAAACCTATTGCGT | + |
|
Preference number: 1 (lower is better) Translates to: KGAKARHREGSCSPF*CSNRKAVSALNLLR Trigger: ACGCAATAGGTTTAAAGCGGAGACCGCTTTTCTGTTTGAGCATCAAAAAGGAGAGCAGGAACCTTCTCTGTGTCTTGCCTTTGCGCCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR CCA 90 bp | TCTTCCATACAGACCATCAGACGATTTCACAGAGTCTCCGCTAAGTaGAGAAGTCTAAATCAATGCACACCAGTGGACAGAGAATGCGTT | + |
|
Preference number: 1 (lower is better) Translates to: SSIQTIRRFHRVSAK*RSLNQCTPVDRECV Trigger: AACGCATTCTCTGTCCACTGGTGTGCATTGATTTAGACTTCTCCACTTAGCGGAGACTCTGTGAAATCGTCTGATGGTCTGTATGGAAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR-3UTR TCA 90 bp | AAGGCCAAGAGGACCGCTAGCCCTGGATGGCTGGGCCTATGGACCACGGGAAAATTTTCAAGCCATGGGTaGTTCTGGCGCGATCCAACA | + |
|
Preference number: 2 (lower is better) Translates to: KAKRTASPGWLGLWTTGKFSSHG*FWRDPT Trigger: TGTTGGATCGCGCCAGAATCACCCATGGCTTGAAAA...TTTTCCCGTGGTCCATAGGCCCAGCCATCCAGGGCTAGCGGTCCTCTTGGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR CAA 90 bp | ACCCAATTCCCACCTCTCCAGACCCTCTTCTCCCACCCACTCTCATaGCCTTTAACTACAATAAATATCACAGGGCCTGGGGCAGAGGAG | + |
|
Preference number: 2 (lower is better) Translates to: TQFPPLQTLFSHPLS*PLTTINITGPGAEE Trigger: CTCCTCTGCCCCAGGCCCTGTGATATTTATTGTAGTTAAAGGCAATGAGAGTGGGTGGGAGAAGAGGGTCTGGAGAGGTGGGAATTGGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR-3UTR TCA 90 bp | TTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCGTTGGGAACCAGCTTCCTTaGAGAACAGCAAAAGGAACC | + |
|
Preference number: 2 (lower is better) Translates to: FPRGNGLCGFFKDCGDPVGNQLP*RTAKGT Trigger: GGTTCCTTTTGCTGTTCTTCAAGGAAGCTGGTTCCC...AACGGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR-3UTR TCA 90 bp | CATTTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCTCCTGCTCTCCTTTTTaGTGCTCAAACAGAAAAGCG | + |
|
Preference number: 2 (lower is better) Translates to: HFPRGNGLCGFFKDCGDPSCSPF*CSNRKA Trigger: CGCTTTTCTGTTTGAGCATCAAAAAGGAGAGCAGGA...GGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAAATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR CCA 72 bp | AGGAGAAGGCCAAGAGGACCGCTAGCCCTGGATGGCTaGGCCTATGGACCACGGGAAAAGCCAAAGAGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: RRRPRGPLALDG*AYGPREKPKRA Trigger: AGCCCTCTTTGGCTTTTCCCGTGGTCCATAGGCCCAGCCATCCAGGGCTAGCGGTCCTCTTGGCCTTCTCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR-3UTR CAA 90 bp | CATTTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCGAGCGGGTCTCAAAGTaGAGGAAGGAATGGGGCAGT | + |
|
Preference number: 3 (lower is better) Translates to: HFPRGNGLCGFFKDCGDPERVSK*RKEWGS Trigger: ACTGCCCCATTCCTTCCTCAACTTTGAGACCCGCTC...GGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR CCA 72 bp | TGGAGACTCTTCATAAATAGACTCCCTGAATTCCGCTaGGACCGGCCGAGCTCCCCAGAGAGGTTAAGGAGT | + |
|
Preference number: 3 (lower is better) Translates to: WRLFINRLPEFR*DRPSSPERLRS Trigger: ACTCCTTAACCTCTCTGGGGAGCTCGGCCGGTCCCAGCGGAATTCAGGGAGTCTATTTATGAAGAGTCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR GCA 72 bp | CACAGAGTCTCCGCTAAGTGGAGAAGTCTAAATCAATaGACACCAGTGGACAGAGAATGCGTTGGGGAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: HRVSAKWRSLNQ*TPVDRECVGEG Trigger: CCCCTCCCCAACGCATTCTCTGTCCACTGGTGTGCATTGATTTAGACTTCTCCACTTAGCGGAGACTCTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR-3UTR CAA 90 bp | CATTTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCTCCGCTTTAAACCTATaGCGTAGATCAGGGAGGCCA | + |
|
Preference number: 3 (lower is better) Translates to: HFPRGNGLCGFFKDCGDPSALNL*RRSGRP Trigger: TGGCCTCCCTGATCTACGCAATAGGTTTAAAGCGGA...GGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR-3UTR CAA 90 bp | CATTTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCAGGGAACCAGCTTCCTaGAAGAACAGCAAAAGGAAC | + |
|
Preference number: 3 (lower is better) Translates to: HFPRGNGLCGFFKDCGDPREPAS*KNSKRN Trigger: GTTCCTTTTGCTGTTCTTCAAGGAAGCTGGTTCCCT...GGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR TCA 90 bp | GAGAAGGCCAAGAGGACCGCTAGCCCTGGATGGCTGGGCCTATGGACCACGGGAAACAGCAGCTCCGGGTaGGGATGCGGGTGTGGATGC | + |
|
Preference number: 4 (lower is better) Translates to: EKAKRTASPGWLGLWTTGNSSSG*GCGCGC Trigger: GCATCCACACCCGCATCCTCACCCGGAGCTGCTGTT...TCCCGTGGTCCATAGGCCCAGCCATCCAGGGCTAGCGGTCCTCTTGGCCTTCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR GCA 90 bp | GAGAAGGCCAAGAGGACCGCTAGCCCTGGATGGCTGGGCCTATGGACCACGGGACACCACGTCTATGTCTaGGTCGGGCTCAGACAGCGC | + |
|
Preference number: 4 (lower is better) Translates to: EKAKRTASPGWLGLWTTGHHVYV*VGLRQR Trigger: GCGCTGTCTGAGCCCGACGCAGACATAGACGTGGTG...TCCCGTGGTCCATAGGCCCAGCCATCCAGGGCTAGCGGTCCTCTTGGCCTTCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR GCA 90 bp | GAATTCCGCTGGGACCGGCCGAGCTCCCCAGAGAGGTTAAGGAGTGAGGGCCTAAGTGAGTCCCCTGGGTaGGAGAGGCGGATGTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: EFRWDRPSSPERLRSEGLSESPG*ERRMWP Trigger: TGGCCACATCCGCCTCTCGCACCCAGGGGACTCACT...TAGGCCCTCACTCCTTAACCTCTCTGGGGAGCTCGGCCGGTCCCAGCGGAATTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR TCA 90 bp | CATTTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCGGAGGCTCGTGGCCGTaGGGGAGCACGTCCCGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: HFPRGNGLCGFFKDCGDPGGSWP*GSTSRG Trigger: CCCTCGGGACGTGCTCCCTCACGGCCACGAGCCTCC...GGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAAATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR CCA 90 bp | GAATTCCGCTGGGACCGGCCGAGCTCCCCAGAGAGGTTAAGGAGTGAGGGCCTACCGGGGCAGTCAGCATaGCCAAGACTTGGGCTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: EFRWDRPSSPERLRSEGLPGQSA*PRLGLD Trigger: GTCAAGCCCAAGTCTTGGCCATGCTGACTGCCCCGG...TAGGCCCTCACTCCTTAACCTCTCTGGGGAGCTCGGCCGGTCCCAGCGGAATTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR TCA 90 bp | TTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCGTTCGCCGGCGTCCGTCTTaGGGCCCTGACGCAGGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: FPRGNGLCGFFKDCGDPVRRRPS*GPDAGV Trigger: CACTCCTGCGTCAGGGCCTCAAGACGGACGCCGGCG...AACGGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR CCA 90 bp | AAGGCCAAGAGGACCGCTAGCCCTGGATGGCTGGGCCTATGGACCACGGGAAAAGCCCCGCCACCACCGTaGCCCATGATGTGGTCTATA | + |
|
Preference number: 4 (lower is better) Translates to: KAKRTASPGWLGLWTTGKAPPPP*PMMWSI Trigger: TATAGACCACATCATGGGCCACGGTGGTGGCGGGGC...TTTTCCCGTGGTCCATAGGCCCAGCCATCCAGGGCTAGCGGTCCTCTTGGCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR GCA 90 bp | TTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCGTTGGTGGCGGCAGAGGCTaGCGCTTGAAGCGCTTGCGG | + |
|
Preference number: 4 (lower is better) Translates to: FPRGNGLCGFFKDCGDPVGGGRG*RLKRLR Trigger: CCGCAAGCGCTTCAAGCGGCAGCCTCTGCCGCCACC...AACGGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR TCA 90 bp | GACTGTGAAAGGCGCAAAGGCAAGACACAGAGAAGGTTCCTGCTCTCCTTTTTGGCAGAGGCTGCCGCTTaGAGCGCTTGCGGCGCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: DCERRKGKTQRRFLLSFLAEAAA*SACGAA Trigger: TGCGGCGCCGCAAGCGCTTCAAGCGGCAGCCTCTGC...CAAAAAGGAGAGCAGGAACCTTCTCTGTGTCTTGCCTTTGCGCCTTTCACAGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR GCA 90 bp | TTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCGTTTTGACCCCCAGGACCTaGGGCTGCGGCGAATGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: FPRGNGLCGFFKDCGDPVLTPRT*GCGEWR Trigger: TCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAA...AACGGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR CCA 90 bp | GAGAAGGCCAAGAGGACCGCTAGCCCTGGATGGCTGGGCCTATGGACCACGGGACCGTGGCCCATGATGTaGTCTATAGAAAAGGAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: EKAKRTASPGWLGLWTTGPWPMM*SIEKEG Trigger: GCCTTCCTTTTCTATAGACCACATCATGGGCCACGG...TCCCGTGGTCCATAGGCCCAGCCATCCAGGGCTAGCGGTCCTCTTGGCCTTCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR TCA 90 bp | TTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCGTTTCCGTCTTGAGGCCCTaGCGCAGGAGTGCAGTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: FPRGNGLCGFFKDCGDPVSVLRP*RRSAVD Trigger: GTCCACTGCACTCCTGCGTCAGGGCCTCAAGACGGA...AACGGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR TCA 90 bp | CATTTTCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATTGTGGAGACCCCAAAAGTGGCAGCCACTaGGGCCCGCGACTTTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: HFPRGNGLCGFFKDCGDPKSGSH*GPRLCW Trigger: CCAGCAAAGTCGCGGGCCTCAGTGGCTGCCACTTTT...GGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGAAAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR CCA 90 bp | GCGCAAAGGCAAGACACAGAGAAGGTTCCTGCTCTCCTTTTTGATGCTCAAACATGCGAGAGGCGGATGTaGCCAGCCACCGGAGTCAGG | + |
|
Preference number: 4 (lower is better) Translates to: AQRQDTEKVPALLFDAQTCERRM*PATGVR Trigger: CCTGACTCCGGTGGCTGGCCACATCCGCCTCTCGCA...TGTTTGAGCATCAAAAAGGAGAGCAGGAACCTTCTCTGTGTCTTGCCTTTGCGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR CCA 90 bp | GACTGTGAAAGGCGCAAAGGCAAGACACAGAGAAGGTTCCTGCTCTCCTTTTTGGGCCCGCGACTTTGCTaGCAAACGAGGGCCCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: DCERRKGKTQRRFLLSFLGPRLC*QTRALK Trigger: CTTCAGGGCCCTCGTTTGCCAGCAAAGTCGCGGGCC...CAAAAAGGAGAGCAGGAACCTTCTCTGTGTCTTGCCTTTGCGCCTTTCACAGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR CAA 72 bp | TGCTCAAACAGAAAAGCGGTCTCCGCTTTAAACCTATaGCGTAGATCAGGGAGGCCAGGGAGCCCGCTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: CSNRKAVSALNL*RRSGRPGSPLR Trigger: ACGAAGCGGGCTCCCTGGCCTCCCTGATCTACGCAATAGGTTTAAAGCGGAGACCGCTTTTCTGTTTGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR CAA 72 bp | TCCTCGGGGAAATGGGCTCTGCGGTTTCTTCAAGGATaGTGGAGACCCCGTTTCACTTCTCTTAGCTTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: SSGKWALRFLQG*WRPRFTSLSFP Trigger: CGGGAAGCTAAGAGAAGTGAAACGGGGTCTCCACAATCCTTGAAGAAACCGCAGAGCCCATTTCCCCGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| 3UTR CAA 72 bp | AAAGGCAAGACACAGAGAAGGTTCCTGCTCTCCTTTTaGATGCTCAAACAGAAAAGCGGTCTCCGCTTTAAA | + |
|
Preference number: 4 (lower is better) Translates to: KGKTQRRFLLSF*MLKQKSGLRFK Trigger: TTTAAAGCGGAGACCGCTTTTCTGTTTGAGCATCAAAAAGGAGAGCAGGAACCTTCTCTGTGTCTTGCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 90 bp | GCGCCGCGGCGCGGCCCGGGGGAACTGACAGCTGGCAAGGCGCGGTaGCGGCGAAGGCGAAGGCGTGCGGGTGCGGATGCGGGTGTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: APRRGPGELTAGKAR*RRRRRRAGADAGVG Trigger: CCCCACACCCGCATCCGCACCCGCACGCCTTCGCCTTCGCCGCCACCGCGCCTTGCCAGCTGTCAGTTCCCCCGGGCCGCGCCGCGGCGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 90 bp | GGCGAAGGCGTGCGGGTGCGGATGCGGGTGTGGGGCCGGGCCCGGTaGAGGTGCACCGTAGGCCGGGAGCGCCAGCCCGTAGCCGTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: GEGVRVRMRVWGRAR*RCTVGRERQPVAVA Trigger: GGCTACGGCTACGGGCTGGCGCTCCCGGCCTACGGTGCACCTCCACCGGGCCCGGCCCCACACCCGCATCCGCACCCGCACGCCTTCGCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 90 bp | GGCGTGCGGGTGCGGATGCGGGTGTGGGGCCGGGCCCGGTGGAGGTaGACCGTAGGCCGGGAGCGCCAGCCCGTAGCCGTAGCCGTAAGC | + |
|
Preference number: 5 (lower is better) Translates to: GVRVRMRVWGRARWR*TVGRERQPVAVAVS Trigger: GCTTACGGCTACGGCTACGGGCTGGCGCTCCCGGCCTACGGTGCACCTCCACCGGGCCCGGCCCCACACCCGCATCCGCACCCGCACGCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS TCA 90 bp | GGGTCCCCGGCCGCGGCAGCCCCGCCACGCAACAGCAGCTCCGGGTaGGGATGCGGGTGTGGATGCGGTGGCGGCAGAGGCTGCCGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: GSPAAAAPPRNSSSG*GCGCGCGGGRGCRL Trigger: CAAGCGGCAGCCTCTGCCGCCACCGCATCCACACCCGCATCCTCACCCGGAGCTGCTGTTGCGTGGCGGGGCTGCCGCGGCCGGGGACCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS TCA 90 bp | GCGCCCCCGCCACCCGCACCACCGCCGGCGTCCGTCTTGAGGCCCTaGCGCAGGAGTGCAGTGGACAGGCTAGCCGCTGTGCCAGCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: APPPPAPPPASVLRP*RRSAVDRLAAVPAA Trigger: CGCAGCTGGCACAGCGGCTAGCCTGTCCACTGCACTCCTGCGTCAGGGCCTCAAGACGGACGCCGGCGGTGGTGCGGGTGGCGGGGGCGC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 90 bp | GGAACTGACAGCTGGCAAGGCGCGGTGGCGGCGAAGGCGAAGGCGTaGGGGTGCGGATGCGGGTGTGGGGCCGGGCCCGGTGGAGGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: GTDSWQGAVAAKAKA*GCGCGCGAGPGGGA Trigger: TGCACCTCCACCGGGCCCGGCCCCACACCCGCATCCGCACCCGCACGCCTTCGCCTTCGCCGCCACCGCGCCTTGCCAGCTGTCAGTTCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 90 bp | GGCCAAGACTTGGGCTTGACCCCCAGGACCTGCGGCTGCGGCGAATaGCGATCCCGGAGAACCGTCGCCGCTGCCCGGGGGTGCGGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: GQDLGLTPRTCGCGE*RSRRTVAAARGCGP Trigger: GGGGCCGCACCCCCGGGCAGCGGCGACGGTTCTCCGGGATCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAAGTCTTGGCC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 90 bp | GGCAGCCCCGCCACGCAACAGCAGCTCCGGGTGAGGATGCGGGTGTaGATGCGGTGGCGGCAGAGGCTGCCGCTTGAAGCGCTTGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: GSPATQQQLRVRMRV*MRWRQRLPLEALAA Trigger: CGCCGCAAGCGCTTCAAGCGGCAGCCTCTGCCGCCACCGCATCCACACCCGCATCCTCACCCGGAGCTGCTGTTGCGTGGCGGGGCTGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 90 bp | AGTCAGCATGGCCAAGACTTGGGCTTGACCCCCAGGACCTGCGGCTaGGGCGAATGGCGATCCCGGAGAACCGTCGCCGCTGCCCGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: SQHGQDLGLTPRTCG*GEWRSRRTVAAARG Trigger: CCCCCGGGCAGCGGCGACGGTTCTCCGGGATCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAAGTCTTGGCCATGCTGACT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 90 bp | CGGGGCAGTCAGCATGGCCAAGACTTGGGCTTGACCCCCAGGACCTaGGGCTGCGGCGAATGGCGATCCCGGAGAACCGTCGCCGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: RGSQHGQDLGLTPRT*GCGEWRSRRTVAAA Trigger: GGCAGCGGCGACGGTTCTCCGGGATCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAAGTCTTGGCCATGCTGACTGCCCCG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 90 bp | GGCCCTGAAGACAGGAGTGAGTCCCCTGGGTGCGAGAGGCGGATGTaGCCAGCCACCGGAGTCAGGGCCGGGGCAGTCAGCATGGCCAAG | + |
|
Preference number: 5 (lower is better) Translates to: GPEDRSESPGCERRM*PATGVRAGAVSMAK Trigger: CTTGGCCATGCTGACTGCCCCGGCCCTGACTCCGGTGGCTGGCCACATCCGCCTCTCGCACCCAGGGGACTCACTCCTGTCTTCAGGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 90 bp | TGCGGCGAATGGCGATCCCGGAGAACCGTCGCCGCTGCCCGGGGGTaGGGCCCCGCCACCACCGTGGCCCATGATGTGGTCTATAGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: CGEWRSRRTVAAARG*GPATTVAHDVVYRK Trigger: TTTTCTATAGACCACATCATGGGCCACGGTGGTGGCGGGGCCGCACCCCCGGGCAGCGGCGACGGTTCTCCGGGATCGCCATTCGCCGCA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 90 bp | TTGCTGGCAAACGAGGGCCCTGAAGACAGGAGTGAGTCCCCTGGGTaGGAGAGGCGGATGTGGCCAGCCACCGGAGTCAGGGCCGGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: LLANEGPEDRSESPG*ERRMWPATGVRAGA Trigger: TGCCCCGGCCCTGACTCCGGTGGCTGGCCACATCCGCCTCTCGCACCCAGGGGACTCACTCCTGTCTTCAGGGCCCTCGTTTGCCAGCAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR CAA 90 bp | GACTGTGAAAGGCGCAAAGGCAAGACACAGAGAAGGTTCCTGCTCTCCTTTTTGGGCAGAGGCTGCCGCTaGAAGCGCTTGCGGCGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: DCERRKGKTQRRFLLSFLGRGCR*KRLRRR Trigger: GCGGCGCCGCAAGCGCTTCAAGCGGCAGCCTCTGCC...CAAAAAGGAGAGCAGGAACCTTCTCTGTGTCTTGCCTTTGCGCCTTTCACAGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS-3UTR CAA 90 bp | GCGCAAAGGCAAGACACAGAGAAGGTTCCTGCTCTCCTTTTTGATGCTCAAACACAGCATGGCCAAGACTaGGGCTTGACCCCCAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: AQRQDTEKVPALLFDAQTQHGQD*GLTPRT Trigger: GGTCCTGGGGGTCAAGCCCAAGTCTTGGCCATGCTG...TGTTTGAGCATCAAAAAGGAGAGCAGGAACCTTCTCTGTGTCTTGCCTTTGCGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 72 bp | GGAGGCGCCGCGGCGCGGCCCGGGGGAACTGACAGCTaGCAAGGCGCGGTGGCGGCGAAGGCGAAGGCGTGC | + |
|
Preference number: 6 (lower is better) Translates to: GGAAARPGGTDS*QGAVAAKAKAC Trigger: GCACGCCTTCGCCTTCGCCGCCACCGCGCCTTGCCAGCTGTCAGTTCCCCCGGGCCGCGCCGCGGCGCCTCC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 72 bp | CAAGGCGCGGTGGCGGCGAAGGCGAAGGCGTGCGGGTaGGGATGCGGGTGTGGGGCCGGGCCCGGTGGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: QGAVAAKAKACG*GCGCGAGPGGG Trigger: ACCTCCACCGGGCCCGGCCCCACACCCGCATCCGCACCCGCACGCCTTCGCCTTCGCCGCCACCGCGCCTTG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 72 bp | CTGCGGCGAATGGCGATCCCGGAGAACCGTCGCCGCTaGCCGGGGGTGCGGCCCCGCCACCACCGTGGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: LRRMAIPENRRR*PGVRPRHHRGP Trigger: TGGGCCACGGTGGTGGCGGGGCCGCACCCCCGGGCAGCGGCGACGGTTCTCCGGGATCGCCATTCGCCGCAG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 72 bp | GTGCGGATGCGGGTGTGGGGCCGGGCCCGGTGGAGGTaGACCGTAGGCCGGGAGCGCCAGCCCGTAGCCGTA | + |
|
Preference number: 6 (lower is better) Translates to: VRMRVWGRARWR*TVGRERQPVAV Trigger: TACGGCTACGGGCTGGCGCTCCCGGCCTACGGTGCACCTCCACCGGGCCCGGCCCCACACCCGCATCCGCAC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 72 bp | CGCGGCCCGGGGGAACTGACAGCTGGCAAGGCGCGGTaGCGGCGAAGGCGAAGGCGTGCGGGTGCGGATGCG | + |
|
Preference number: 6 (lower is better) Translates to: RGPGELTAGKAR*RRRRRRAGADA Trigger: CGCATCCGCACCCGCACGCCTTCGCCTTCGCCGCCACCGCGCCTTGCCAGCTGTCAGTTCCCCCGGGCCGCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 72 bp | TTGGGCTTGACCCCCAGGACCTGCGGCTGCGGCGAATaGCGATCCCGGAGAACCGTCGCCGCTGCCCGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: LGLTPRTCGCGE*RSRRTVAAARG Trigger: CCCCCGGGCAGCGGCGACGGTTCTCCGGGATCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS TCA 72 bp | CCACCCGCACCACCGCCGGCGTCCGTCTTGAGGCCCTaGCGCAGGAGTGCAGTGGACAGGCTAGCCGCTGTG | + |
|
Preference number: 6 (lower is better) Translates to: PPAPPPASVLRP*RRSAVDRLAAV Trigger: CACAGCGGCTAGCCTGTCCACTGCACTCCTGCGTCAGGGCCTCAAGACGGACGCCGGCGGTGGTGCGGGTGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 72 bp | ACCGCCGGCGTCCGTCTTGAGGCCCTGACGCAGGAGTaGAGTGGACAGGCTAGCCGCTGTGCCAGCTGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: TAGVRLEALTQE*SGQASRCASCG Trigger: CCCGCAGCTGGCACAGCGGCTAGCCTGTCCACTGCACTCCTGCGTCAGGGCCTCAAGACGGACGCCGGCGGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 72 bp | CAGCAGCTCCGGGTGAGGATGCGGGTGTGGATGCGGTaGCGGCAGAGGCTGCCGCTTGAAGCGCTTGCGGCG | + |
|
Preference number: 6 (lower is better) Translates to: QQLRVRMRVWMR*RQRLPLEALAA Trigger: CGCCGCAAGCGCTTCAAGCGGCAGCCTCTGCCGCCACCGCATCCACACCCGCATCCTCACCCGGAGCTGCTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CAA 90 bp | GCCAGCCACCGGAGTCAGGGCCGGGGCAGTCAGCATGGCCAAGACTaGGGCTTGACCCCCAGGACCTGCGGCTGCGGCGAATGGCGATCC | + |
|
Preference number: 6 (lower is better) Translates to: ASHRSQGRGSQHGQD*GLTPRTCGCGEWRS Trigger: GGATCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAAGTCTTGGCCATGCTGACTGCCCCGGCCCTGACTCCGGTGGCTGGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CAA 90 bp | CACCGGAGTCAGGGCCGGGGCAGTCAGCATGGCCAAGACTTGGGCTaGACCCCCAGGACCTGCGGCTGCGGCGAATGGCGATCCCGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: HRSQGRGSQHGQDLG*TPRTCGCGEWRSRR Trigger: TCTCCGGGATCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAAGTCTTGGCCATGCTGACTGCCCCGGCCCTGACTCCGGTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CCA 72 bp | GCCACGCAACAGCAGCTCCGGGTGAGGATGCGGGTGTaGATGCGGTGGCGGCAGAGGCTGCCGCTTGAAGCG | + |
|
Preference number: 6 (lower is better) Translates to: ATQQQLRVRMRV*MRWRQRLPLEA Trigger: CGCTTCAAGCGGCAGCCTCTGCCGCCACCGCATCCACACCCGCATCCTCACCCGGAGCTGCTGTTGCGTGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS CAA 72 bp | CGGAGTCAGGGCCGGGGCAGTCAGCATGGCCAAGACTaGGGCTTGACCCCCAGGACCTGCGGCTGCGGCGAA | + |
|
Preference number: 6 (lower is better) Translates to: RSQGRGSQHGQD*GLTPRTCGCGE Trigger: TTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAAGTCTTGGCCATGCTGACTGCCCCGGCCCTGACTCCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 72 bp | CAGCATGGCCAAGACTTGGGCTTGACCCCCAGGACCTaGGGCTGCGGCGAATGGCGATCCCGGAGAACCGTC | + |
|
Preference number: 6 (lower is better) Translates to: QHGQDLGLTPRT*GCGEWRSRRTV Trigger: GACGGTTCTCCGGGATCGCCATTCGCCGCAGCCGCAGGTCCTGGGGGTCAAGCCCAAGTCTTGGCCATGCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||
| CDS GCA 72 bp | AACGAGGGCCCTGAAGACAGGAGTGAGTCCCCTGGGTaGGAGAGGCGGATGTGGCCAGCCACCGGAGTCAGG | + |
|
Preference number: 6 (lower is better) Translates to: NEGPEDRSESPG*ERRMWPATGVR Trigger: CCTGACTCCGGTGGCTGGCCACATCCGCCTCTCGCACCCAGGGGACTCACTCCTGTCTTCAGGGCCCTCGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068654.5 |
||