Pregenerated sensors for FOXD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078302Ensembl transcript IDs: ENSMUST00000105098.6
Found 93 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAGACCCGCTGCCTTTGTTCCAACACCTGCTTGTCAGCACAGCCTaGCCAGGCGTGCCCCACACTCCGGGATCACCCGCCCAAGGCCCA | + |
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Preference number: 1 (lower is better) Translates to: VDPLPLFQHLLVSTA*PGVPHTPGSPAQGP Trigger: TGGGCCTTGGGCGGGTGATCCCGGAGTGTGGGGCACGCCTGGCCAGGCTGTGCTGACAAGCAGGTGTTGGAACAAAGGCAGCGGGTCTAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 90 bp | TGCCTTTGTTCCAACACCTGCTTGTCAGCACAGCCTGGCCAGGCGTaGCCCACACTCCGGGATCACCCGCCCAAGGCCCATGGTCCACTC | + |
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Preference number: 1 (lower is better) Translates to: CLCSNTCLSAQPGQA*PTLRDHPPKAHGPL Trigger: GAGTGGACCATGGGCCTTGGGCGGGTGATCCCGGAGTGTGGGGCACGCCTGGCCAGGCTGTGCTGACAAGCAGGTGTTGGAACAAAGGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 90 bp | CAGGGTTGCAGCATAGGGCGATTTTGCATAAATAGATGGACCCTCTaGGCTAAACTGCGCGGCGCCCCAGCTGTCGCCCAACACAGTCTG | + |
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Preference number: 1 (lower is better) Translates to: QGCSIGRFCINRWTL*AKLRGAPAVAQHSL Trigger: CAGACTGTGTTGGGCGACAGCTGGGGCGCCGCGCAGTTTAGCTCAGAGGGTCCATCTATTTATGCAAAATCGCCCTATGCTGCAACCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 90 bp | GTCGGCGGCTCTGTGCGTTGCACAAGTCTACCTTCAGGAGTGCCATaGCTCTGTATGGTTTGCCTTTGGATCCAGTCTGCGAACGCCTCT | + |
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Preference number: 1 (lower is better) Translates to: VGGSVRCTSLPSGVP*LCMVCLWIQSANAS Trigger: AGAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAGCCGCCGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 90 bp | CACTGGATTTGCATGCGAATGAGGAGCCCCAGGAGGAGACATCCTTaGCCATCAAAGGCCTGGGTAGACCCGCTGCCTTTGTTCCAACAC | + |
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Preference number: 1 (lower is better) Translates to: HWICMRMRSPRRRHP*PSKAWVDPLPLFQH Trigger: GTGTTGGAACAAAGGCAGCGGGTCTACCCAGGCCTTTGATGGGCAAGGATGTCTCCTCCTGGGGCTCCTCATTCGCATGCAAATCCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 90 bp | AGGCTGAACCTGGTGGTATGCAACAGACTAAACAAGCACCCAGCCTaGCCAAAAGCAGGTTTGTGGTCTGCTGCCCGCGAGGGTGATGTG | + |
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Preference number: 1 (lower is better) Translates to: RLNLVVCNRLNKHPA*PKAGLWSAAREGDV Trigger: CACATCACCCTCGCGGGCAGCAGACCACAAACCTGCTTTTGGTCAGGCTGGGTGCTTGTTTAGTCTGTTGCATACCACCAGGTTCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 90 bp | CGTTGCACAAGTCTACCTTCAGGAGTGCCATGCCTCTGTATGGTTTaGCTTTGGATCCAGTCTGCGAACGCCTCTGCAAAAGGGCTCCCG | + |
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Preference number: 1 (lower is better) Translates to: RCTSLPSGVPCLCMV*LWIQSANASAKGLP Trigger: CGGGAGCCCTTTTGCAGAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 90 bp | CAGGGACCCCAGGGCCAGCACTGGGCCACCCTGAACCTAGAGTACTaGAAACCTGTGGAGACAGGAATAGAACTCCTCTTCGCACTTTAT | + |
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Preference number: 1 (lower is better) Translates to: QGPQGQHWATLNLEY*KPVETGIELLFALY Trigger: ATAAAGTGCGAAGAGGAGTTCTATTCCTGTCTCCACAGGTTTTCAGTACTCTAGGTTCAGGGTGGCCCAGTGCTGGCCCTGGGGTCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 90 bp | GCTAAATCTAGCTGCAGATTAAATCCCCGCAGCACAACAGAGCCTTaGATGGAGAGGCTCCTTTTTGTGTGGTCCTTCCTCGGGAGCTGC | + |
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Preference number: 1 (lower is better) Translates to: AKSSCRLNPRSTTEP*MERLLFVWSFLGSC Trigger: GCAGCTCCCGAGGAAGGACCACACAAAAAGGAGCCTCTCCATTCAAGGCTCTGTTGTGCTGCGGGGATTTAATCTGCAGCTAGATTTAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 90 bp | GGCCAATGTTTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTATTaGGGAAGGCCTGTTCGAGCAGCCTTCTTGCCTACAAACACACAA | + |
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Preference number: 1 (lower is better) Translates to: GQCLSNWFIFRDPGY*GRPVRAAFLPTNTQ Trigger: TTGTGTGTTTGTAGGCAAGAAGGCTGCTCGAACAGGCCTTCCTCAATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 90 bp | ACCAGGCTTCAAATATGGCCAGCCCTGCACAGTACTGGCCTGTTATaGAGACGTCATGATTGGATAGGTTCAATCTGTGAGTCTTCAGAT | + |
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Preference number: 1 (lower is better) Translates to: TRLQIWPALHSTGLL*RRHDWIGSICESSD Trigger: ATCTGAAGACTCACAGATTGAACCTATCCAATCATGACGTCTGCATAACAGGCCAGTACTGTGCAGGGCTGGCCATATTTGAAGCCTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 90 bp | AGTTGTAGCAAATCCACACTTTGTAGTCGGGAGGAGGAGAGCTGGTaGCCAATGTTTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTA | + |
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Preference number: 1 (lower is better) Translates to: SCSKSTLCSREEESW*PMFVQLVYFSRPRL Trigger: TAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCCACCAGCTCTCCTCCTCCCGACTACAAAGTGTGGATTTGCTACAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 90 bp | ATGAGTTGTAGCAAATCCACACTTTGTAGTCGGGAGGAGGAGAGCTaGTGGCCAATGTTTGTCCAACTGGTTTATTTTTCGAGACCCAGG | + |
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Preference number: 1 (lower is better) Translates to: MSCSKSTLCSREEES*WPMFVQLVYFSRPR Trigger: CCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCCACCAGCTCTCCTCCTCCCGACTACAAAGTGTGGATTTGCTACAACTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 90 bp | TTCGAGACCCAGGCTATTGAGGAAGGCCTGTTCGAGCAGCCTTCTTaGCTACAAACACACAAACATCCTTCTGTTTGCCTTCAAAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: FETQAIEEGLFEQPS*LQTHKHPSVCLQRK Trigger: TTTTCTTTGAAGGCAAACAGAAGGATGTTTGTGTGTTTGTAGGCAAGAAGGCTGCTCGAACAGGCCTTCCTCAATAGCCTGGGTCTCGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 90 bp | TGGCCAGCCCTGCACAGTACTGGCCTGTTATGCAGACGTCATGATTaGATAGGTTCAATCTGTGAGTCTTCAGATATCATAGTGTGTACA | + |
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Preference number: 1 (lower is better) Translates to: WPALHSTGLLCRRHD*IGSICESSDIIVCT Trigger: TGTACACACTATGATATCTGAAGACTCACAGATTGAACCTATCCAATCATGACGTCTGCATAACAGGCCAGTACTGTGCAGGGCTGGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 90 bp | GGTTTTGAGTCTTTTTCTTCTTCAGAAGAGACCAGGCTTCAAATATaGCCAGCCCTGCACAGTACTGGCCTGTTATGCAGACGTCATGAT | + |
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Preference number: 1 (lower is better) Translates to: GFESFSSSEETRLQI*PALHSTGLLCRRHD Trigger: ATCATGACGTCTGCATAACAGGCCAGTACTGTGCAGGGCTGGCCATATTTGAAGCCTGGTCTCTTCTGAAGAAGAAAAAGACTCAAAACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 90 bp | CCCAGGCATCTTGCCTTTGCACTCAGAACTCATTTGTATAATTCCTaGACTCGCTTTTACCTTAAAGACCAGAACTTTCATATACAATTC | + |
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Preference number: 1 (lower is better) Translates to: PRHLAFALRTHLYNS*TRFYLKDQNFHIQF Trigger: GAATTGTATATGAAAGTTCTGGTCTTTAAGGTAAAAGCGAGTCCAGGAATTATACAAATGAGTTCTGAGTGCAAAGGCAAGATGCCTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CAA 90 bp | AGGAGACATCCTTGCCCATCAAAGGCCTGGGTAGACCCGCTGCCTTaGTTCCAACACCTGCTTGTCAGCACAGCCTGGCCAGGCGTGCCC | + |
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Preference number: 2 (lower is better) Translates to: RRHPCPSKAWVDPLP*FQHLLVSTAWPGVP Trigger: GGGCACGCCTGGCCAGGCTGTGCTGACAAGCAGGTGTTGGAACAAAGGCAGCGGGTCTACCCAGGCCTTTGATGGGCAAGGATGTCTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCACAGCCTGGCCAGGCGTGCCCCACACTCCGGGATCACCCGCCCAAGGCCCCTTGGAAAGTTTAAATaGAGAAGAACTGTGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: QHSLARRAPHSGITRPRPLGKFK*RRTVAA Trigger: TGCTGCCACAGTTCTTCTTCATTTAAACTTTCCAAG...GGGCCTTGGGCGGGTGATCCCGGAGTGTGGGGCACGCCTGGCCAGGCTGTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CCA 90 bp | AGCACAGCCTGGCCAGGCGTGCCCCACACTCCGGGATCACCCGCCCAAGGCCCATGCAGACGTCATGATTaGATAGGTTCAATCTGTGAG | + |
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Preference number: 2 (lower is better) Translates to: STAWPGVPHTPGSPAQGPCRRHD*IGSICE Trigger: CTCACAGATTGAACCTATCCAATCATGACGTCTGCA...TGGGCCTTGGGCGGGTGATCCCGGAGTGTGGGGCACGCCTGGCCAGGCTGTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR TCA 90 bp | GGTTTGTGGTCTGCTGCCCGCGAGGGTGATGTGGGAGCCAAGCACAGGGACCCCTCCGCATGTCCATTATaGTACAAAACACAGGTTAAA | + |
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Preference number: 2 (lower is better) Translates to: GLWSAAREGDVGAKHRDPSACPL*YKTQVK Trigger: TTTAACCTGTGTTTTGTATCATAATGGACATGCGGA...GGGGTCCCTGTGCTTGGCTCCCACATCACCCTCGCGGGCAGCAGACCACAAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR GCA 90 bp | GGTTTGTGGTCTGCTGCCCGCGAGGGTGATGTGGGAGCCAAGCACAGGGACCCCAAATTTGAAAAGGGATaGCCTAAATCACCCAAATTG | + |
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Preference number: 2 (lower is better) Translates to: GLWSAAREGDVGAKHRDPKFEKG*PKSPKL Trigger: CAATTTGGGTGATTTAGGGCATCCCTTTTCAAATTT...GGGGTCCCTGTGCTTGGCTCCCACATCACCCTCGCGGGCAGCAGACCACAAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR GCA 90 bp | CTCTGTGCGTTGCACAAGTCTACCTTCAGGAGTGCCATGCCTCTGTATGGTTTGAAATCCCAGGCATCTTaGCTTTGCACTCAGAACTCA | + |
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Preference number: 2 (lower is better) Translates to: LCALHKSTFRSAMPLYGLKSQAS*LCTQNS Trigger: TGAGTTCTGAGTGCAAAGGCAAGATGCCTGGGATTT...CAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR GCA 90 bp | AAACAAGCACCCAGCCTGACCAAAAGCAGGTTTGTGGTCTGCTGCCCGCGAGGGGTTGACAAATTCTCTTaGGCTTGGGTTATTCATTTT | + |
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Preference number: 2 (lower is better) Translates to: KQAPSLTKSRFVVCCPRGVDKFS*AWVIHF Trigger: AAAATGAATAACCCAAGCGCAAGAGAATTTGTCAAC...CCCTCGCGGGCAGCAGACCACAAACCTGCTTTTGGTCAGGCTGGGTGCTTGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CAA 90 bp | TGGCCAATGTTTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTATaGAGGAAGGCCTGTTCGAGCAGCCTTCTTGCCTACAAACACACA | + |
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Preference number: 2 (lower is better) Translates to: WPMFVQLVYFSRPRL*RKACSSSLLAYKHT Trigger: TGTGTGTTTGTAGGCAAGAAGGCTGCTCGAACAGGCCTTCCTCAATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR TCA 90 bp | CTCTGTGCGTTGCACAAGTCTACCTTCAGGAGTGCCATGCCTCTGTATGGTTTGACTAAACCATCTCCCTaGTCTCAAAGATGGACAAAG | + |
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Preference number: 2 (lower is better) Translates to: LCALHKSTFRSAMPLYGLTKPSP*SQRWTK Trigger: CTTTGTCCATCTTTGAGATCAGGGAGATGGTTTAGT...CAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR TCA 90 bp | CTCTGTGCGTTGCACAAGTCTACCTTCAGGAGTGCCATGCCTCTGTATGGTTTGTCTACTGCAACCTGCTaGCCCAAAGCATTCAAATTA | + |
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Preference number: 2 (lower is better) Translates to: LCALHKSTFRSAMPLYGLSTATC*PKAFKL Trigger: TAATTTGAATGCTTTGGGTCAGCAGGTTGCAGTAGA...CAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CCA 90 bp | AGAGCCTTGAATGGAGAGGCTCCTTTTTGTGTGGTCCTTCCTCGGGAGCTGCCTAGTAGAGGCATTTCTTaGAGACTTTTACTGGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: RALNGEAPFCVVLPRELPSRGIS*RLLLVF Trigger: GAAAACCAGTAAAAGTCTCCAAGAAATGCCTCTACT...AGGCAGCTCCCGAGGAAGGACCACACAAAAAGGAGCCTCTCCATTCAAGGCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CCA 90 bp | CTCTGTGCGTTGCACAAGTCTACCTTCAGGAGTGCCATGCCTCTGTATGGTTTGCTTGGAGACTTTTACTaGTTTTCTATAAGCTGCATT | + |
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Preference number: 2 (lower is better) Translates to: LCALHKSTFRSAMPLYGLLGDFY*FSISCI Trigger: AATGCAGCTTATAGAAAACCAGTAAAAGTCTCCAAG...CAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR GCA 90 bp | GTGGCCAATGTTTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTATTGAGGAAAGCATAGGGCGATTTTaGATAAATAGATGGACCCTC | + |
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Preference number: 2 (lower is better) Translates to: VANVCPTGLFFETQAIEESIGRF*INRWTL Trigger: GAGGGTCCATCTATTTATGCAAAATCGCCCTATGCT...TTCCTCAATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CCA 90 bp | TCAGCCCATAAGGGCTTCATTACCCCCGCAATAGATAACATTTGGCTAAATCTAAATGAAGAAGAACTGTaGCAGCATGGTATCCCGGTT | + |
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Preference number: 2 (lower is better) Translates to: SAHKGFITPAIDNIWLNLNEEEL*QHGIPV Trigger: AACCGGGATACCATGCTGCCACAGTTCTTCTTCATT...TAGATTTAGCCAAATGTTATCTATTGCGGGGGTAATGAAGCCCTTATGGGCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR TCA 90 bp | GTGGCCAATGTTTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTATTGAGGAATCTACCAAACAAGTGTaGACAAGTAGAGGCATTTCT | + |
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Preference number: 2 (lower is better) Translates to: VANVCPTGLFFETQAIEESTKQV*TSRGIS Trigger: AGAAATGCCTCTACTTGTTCACACTTGTTTGGTAGA...TTCCTCAATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR GCA 90 bp | GCTGACCCAAAGCATTCAAATTATGTGTTACATATGCACCCATCTGCTATAAGCCAGGCATCTTGCCTTTaGACTCAGAACTCATTTGTA | + |
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Preference number: 2 (lower is better) Translates to: ADPKHSNYVLHMHPSAISQASCL*TQNSFV Trigger: TACAAATGAGTTCTGAGTGCAAAGGCAAGATGCCTG...GCTTATAGCAGATGGGTGCATATGTAACACATAATTTGAATGCTTTGGGTCAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR GCA 90 bp | TCAGCCCATAAGGGCTTCATTACCCCCGCAATAGATAACATTTGGCTAAATCTAAAACATCCTTCTGTTTaGCTTCAAAGAAAAGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: SAHKGFITPAIDNIWLNLKHPSV*LQRKGV Trigger: CACCCCTTTTCTTTGAAGGCAAACAGAAGGATGTTT...TAGATTTAGCCAAATGTTATCTATTGCGGGGGTAATGAAGCCCTTATGGGCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CAA 90 bp | TTAAGCCAAAATCCCAGGCATCTTGCCTTTGCACTCAGAACTCATTaGTATAATTCCTGGACTCGCTTTTACCTTAAAGACCAGAACTTT | + |
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Preference number: 2 (lower is better) Translates to: LSQNPRHLAFALRTH*YNSWTRFYLKDQNF Trigger: AAAGTTCTGGTCTTTAAGGTAAAAGCGAGTCCAGGAATTATACAAATGAGTTCTGAGTGCAAAGGCAAGATGCCTGGGATTTTGGCTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR TCA 90 bp | TTAAGCCAAAATCCCAGGCATCTTGCCTTTGCACTCAGAACTCATTTGTATAATCATCTTGCTGATAAGTaGGCAGAAATTAACTCGAGA | + |
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Preference number: 2 (lower is better) Translates to: LSQNPRHLAFALRTHLYNHLADK*AEINSR Trigger: TCTCGAGTTAATTTCTGCTCACTTATCAGCAAGATG...ATTATACAAATGAGTTCTGAGTGCAAAGGCAAGATGCCTGGGATTTTGGCTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CAA 90 bp | GGTTTGTGGTCTGCTGCCCGCGAGGGTGATGTGGGAGCCAAGCACAGGGACCCCTCCTCCACAAATCTCTaGAGGGTGGGGAGCAAACAA | + |
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Preference number: 3 (lower is better) Translates to: GLWSAAREGDVGAKHRDPSSTNL*RVGSKQ Trigger: TTGTTTGCTCCCCACCCTCAAGAGATTTGTGGAGGA...GGGGTCCCTGTGCTTGGCTCCCACATCACCCTCGCGGGCAGCAGACCACAAACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 72 bp | TGCATGCGAATGAGGAGCCCCAGGAGGAGACATCCTTaGCCATCAAAGGCCTGGGTAGACCCGCTGCCTTTG | + |
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Preference number: 3 (lower is better) Translates to: CMRMRSPRRRHP*PSKAWVDPLPL Trigger: CAAAGGCAGCGGGTCTACCCAGGCCTTTGATGGGCAAGGATGTCTCCTCCTGGGGCTCCTCATTCGCATGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 72 bp | GCCATGCCTCTGTATGGTTTGCCTTTGGATCCAGTCTaGGAACGCCTCTGCAAAAGGGCTCCCGGGATGCAG | + |
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Preference number: 3 (lower is better) Translates to: AMPLYGLPLDPV*ERLCKRAPGMQ Trigger: CTGCATCCCGGGAGCCCTTTTGCAGAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 72 bp | AGCATAGGGCGATTTTGCATAAATAGATGGACCCTCTaGGCTAAACTGCGCGGCGCCCCAGCTGTCGCCCAA | + |
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Preference number: 3 (lower is better) Translates to: SIGRFCINRWTL*AKLRGAPAVAQ Trigger: TTGGGCGACAGCTGGGGCGCCGCGCAGTTTAGCTCAGAGGGTCCATCTATTTATGCAAAATCGCCCTATGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 72 bp | CTGGTGGTATGCAACAGACTAAACAAGCACCCAGCCTaGCCAAAAGCAGGTTTGTGGTCTGCTGCCCGCGAG | + |
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Preference number: 3 (lower is better) Translates to: LVVCNRLNKHPA*PKAGLWSAARE Trigger: CTCGCGGGCAGCAGACCACAAACCTGCTTTTGGTCAGGCTGGGTGCTTGTTTAGTCTGTTGCATACCACCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 72 bp | CCTTCAGGAGTGCCATGCCTCTGTATGGTTTGCCTTTaGATCCAGTCTGCGAACGCCTCTGCAAAAGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: PSGVPCLCMVCL*IQSANASAKGL Trigger: GAGCCCTTTTGCAGAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCTGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CAA 90 bp | AGGAGTGCCATGCCTCTGTATGGTTTGCCTTTGGATCCAGTCTGCGAACGCCTCAGAGACCGGCCCTGCTaGTGTTGTTTCCATCACAGT | + |
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Preference number: 3 (lower is better) Translates to: RSAMPLYGLPLDPVCERLRDRPC*CCFHHS Trigger: ACTGTGATGGAAACAACACAAGCAGGGCCGGTCTCT...GAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 72 bp | CAGGGCCAGCACTGGGCCACCCTGAACCTAGAGTACTaGAAACCTGTGGAGACAGGAATAGAACTCCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: QGQHWATLNLEY*KPVETGIELLF Trigger: GAAGAGGAGTTCTATTCCTGTCTCCACAGGTTTTCAGTACTCTAGGTTCAGGGTGGCCCAGTGCTGGCCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 72 bp | GCGGCTCTGTGCGTTGCACAAGTCTACCTTCAGGAGTaGCATGCCTCTGTATGGTTTGCCTTTGGATCCAGT | + |
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Preference number: 3 (lower is better) Translates to: AALCVAQVYLQE*HASVWFAFGSS Trigger: ACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAGCCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 72 bp | GCACAAGTCTACCTTCAGGAGTGCCATGCCTCTGTATaGTTTGCCTTTGGATCCAGTCTGCGAACGCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: AQVYLQECHASV*FAFGSSLRTPL Trigger: CAGAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CAA 90 bp | GGGACCCCAGGGCCAGCACTGGGCCACCCTGAACCTAGAGTACTGAAAACCTGTGGACAAAGCTTGGACTaGGAATTATCTAGCAAAGTA | + |
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Preference number: 3 (lower is better) Translates to: GTPGPALGHPEPRVLKTCGQSLD*ELSSKV Trigger: TACTTTGCTAGATAATTCCAAGTCCAAGCTTTGTCC...ACAGGTTTTCAGTACTCTAGGTTCAGGGTGGCCCAGTGCTGGCCCTGGGGTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 72 bp | TACTGTACCCAGCATCAGTTCGCCGACCAGGTTTGCTaGGTAAAGCCCACAGCAAACGGCCAAATCTCAGAA | + |
|
Preference number: 3 (lower is better) Translates to: YCTQHQFADQVC*VKPTANGQISE Trigger: TTCTGAGATTTGGCCGTTTGCTGTGGGCTTTACTCAGCAAACCTGGTCGGCGAACTGATGCTGGGTACAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 72 bp | AGCTGCAGATTAAATCCCCGCAGCACAACAGAGCCTTaGATGGAGAGGCTCCTTTTTGTGTGGTCCTTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: SCRLNPRSTTEP*MERLLFVWSFL Trigger: GAGGAAGGACCACACAAAAAGGAGCCTCTCCATTCAAGGCTCTGTTGTGCTGCGGGGATTTAATCTGCAGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 72 bp | AGTCTACCTTCAGGAGTGCCATGCCTCTGTATGGTTTaGCTTTGGATCCAGTCTGCGAACGCCTCTGCAAAA | + |
|
Preference number: 3 (lower is better) Translates to: SLPSGVPCLCMV*LWIQSANASAK Trigger: TTTTGCAGAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR-3UTR CAA 90 bp | AGAGCCTTGAATGGAGAGGCTCCTTTTTGTGTGGTCCTTCCTCGGGAGCTGCCTCAAACATCCTTCTGTTaGCCTTCAAAGAAAAGGGGT | + |
|
Preference number: 3 (lower is better) Translates to: RALNGEAPFCVVLPRELPQTSFC*PSKKRG Trigger: ACCCCTTTTCTTTGAAGGCAAACAGAAGGATGTTTG...AGGCAGCTCCCGAGGAAGGACCACACAAAAAGGAGCCTCTCCATTCAAGGCTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 72 bp | TGTGTGATCATAAGAAAAGACATAGCTGTGATTCCCTaGTTCCAGGGCAGCTACACATTCATCCTCGGGGCG | + |
|
Preference number: 3 (lower is better) Translates to: CVIIRKDIAVIP*FQGSYTFILGA Trigger: CGCCCCGAGGATGAATGTGTAGCTGCCCTGGAAGCAGGGAATCACAGCTATGTCTTTTCTTATGATCACACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR TCA 72 bp | TTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTATTaGGGAAGGCCTGTTCGAGCAGCCTTCTTGCCTACA | + |
|
Preference number: 3 (lower is better) Translates to: LSNWFIFRDPGY*GRPVRAAFLPT Trigger: TGTAGGCAAGAAGGCTGCTCGAACAGGCCTTCCTCAATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR GCA 72 bp | CAGGCTATTGAGGAAGGCCTGTTCGAGCAGCCTTCTTaGCTACAAACACACAAACATCCTTCTGTTTGCCTT | + |
|
Preference number: 3 (lower is better) Translates to: QAIEEGLFEQPS*LQTHKHPSVCL Trigger: AAGGCAAACAGAAGGATGTTTGTGTGTTTGTAGGCAAGAAGGCTGCTCGAACAGGCCTTCCTCAATAGCCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 72 bp | TCTTTTTCTTCTTCAGAAGAGACCAGGCTTCAAATATaGCCAGCCCTGCACAGTACTGGCCTGTTATGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: SFSSSEETRLQI*PALHSTGLLCR Trigger: TCTGCATAACAGGCCAGTACTGTGCAGGGCTGGCCATATTTGAAGCCTGGTCTCTTCTGAAGAAGAAAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 72 bp | AGCAAATCCACACTTTGTAGTCGGGAGGAGGAGAGCTaGTGGCCAATGTTTGTCCAACTGGTTTATTTTTCG | + |
|
Preference number: 3 (lower is better) Translates to: SKSTLCSREEES*WPMFVQLVYFS Trigger: CGAAAAATAAACCAGTTGGACAAACATTGGCCACCAGCTCTCCTCCTCCCGACTACAAAGTGTGGATTTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CAA 90 bp | AGCCAAAATCCCAGGCATCTTGCCTTTGCACTCAGAACTCATTTGTATAATTCCCCGGCCCTGCTTGTGTaGTTTCCATCACAGTTTAAC | + |
|
Preference number: 3 (lower is better) Translates to: SQNPRHLAFALRTHLYNSPALLV*FPSQFN Trigger: GTTAAACTGTGATGGAAACAACACAAGCAGGGCCGG...GGAATTATACAAATGAGTTCTGAGTGCAAAGGCAAGATGCCTGGGATTTTGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CCA 72 bp | CTGCACAGTACTGGCCTGTTATGCAGACGTCATGATTaGATAGGTTCAATCTGTGAGTCTTCAGATATCATA | + |
|
Preference number: 3 (lower is better) Translates to: LHSTGLLCRRHD*IGSICESSDII Trigger: TATGATATCTGAAGACTCACAGATTGAACCTATCCAATCATGACGTCTGCATAACAGGCCAGTACTGTGCAG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR-3UTR CAA 90 bp | GTGGCCAATGTTTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTATTGAGGAAAAAGATGGACAAAGCTaGGACTTGGAATTATCTAGC | + |
|
Preference number: 3 (lower is better) Translates to: VANVCPTGLFFETQAIEEKDGQS*DLELSS Trigger: GCTAGATAATTCCAAGTCCAAGCTTTGTCCATCTTT...TTCCTCAATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR-3UTR CAA 90 bp | CAACCTGCTGACCCAAAGCATTCAAATTATGTGTTACATATGCACCCATCTGCTGCAAGGAACTATAAGTaGAATCTAATCAGCACTGAA | + |
|
Preference number: 3 (lower is better) Translates to: QPADPKHSNYVLHMHPSAARNYK*NLISTE Trigger: TTCAGTGCTGATTAGATTCAACTTATAGTTCCTTGC...AGCAGATGGGTGCATATGTAACACATAATTTGAATGCTTTGGGTCAGCAGGTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR TCA 72 bp | TGGCAGCATGGTATCCCGGTTTTGTTAGTCTTTCTTTaGAAGTACTATTTAAGTAGATCCTGGACTGAGTTC | + |
|
Preference number: 3 (lower is better) Translates to: WQHGIPVLLVFL*KYYLSRSWTEF Trigger: GAACTCAGTCCAGGATCTACTTAAATAGTACTTTCAAAGAAAGACTAACAAAACCGGGATACCATGCTGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR GCA 72 bp | AAAGCATTCAAATTATGTGTTACATATGCACCCATCTaGTATAAGCAGGGCTCGCAGTACCATCTGTACTTA | + |
|
Preference number: 3 (lower is better) Translates to: KAFKLCVTYAPI*YKQGSQYHLYL Trigger: TAAGTACAGATGGTACTGCGAGCCCTGCTTATAGCAGATGGGTGCATATGTAACACATAATTTGAATGCTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR CCA 72 bp | GGCTTTGACTTGGAAAGTTTAAATGAAGAAGAACTGTaGCAGCATGGTATCCCGGTTTTGTTAGTCTTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: GFDLESLNEEEL*QHGIPVLLVFL Trigger: AAGAAAGACTAACAAAACCGGGATACCATGCTGCCACAGTTCTTCTTCATTTAAACTTTCCAAGTCAAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR CCA 72 bp | CTTGCCTTTGCACTCAGAACTCATTTGTATAATTCCTaGACTCGCTTTTACCTTAAAGACCAGAACTTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: LAFALRTHLYNS*TRFYLKDQNFH Trigger: ATGAAAGTTCTGGTCTTTAAGGTAAAAGCGAGTCCAGGAATTATACAAATGAGTTCTGAGTGCAAAGGCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR TCA 72 bp | CTGTTAAATTACCTTAGAATGACTAAACCATCTCCCTaGTCTCAAAGATGGACAAAGCTTGGACTTGGAATT | + |
|
Preference number: 3 (lower is better) Translates to: LLNYLRMTKPSP*SQRWTKLGLGI Trigger: AATTCCAAGTCCAAGCTTTGTCCATCTTTGAGATCAGGGAGATGGTTTAGTCATTCTAAGGTAATTTAACAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR TCA 72 bp | AAGAAACTGAATAAACAGATCTCTACTGCAACCTGCTaGCCCAAAGCATTCAAATTATGTGTTACATATGCA | + |
|
Preference number: 3 (lower is better) Translates to: KKLNKQISTATC*PKAFKLCVTYA Trigger: TGCATATGTAACACATAATTTGAATGCTTTGGGTCAGCAGGTTGCAGTAGAGATCTGTTTATTCAGTTTCTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR TCA 72 bp | TCTGTAAACACCCAGGTACTTTCATCTTTAAATCTTTaGACCACATACCCTGTTAAAGTTGACAAATTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: SVNTQVLSSLNL*TTYPVKVDKFS Trigger: AGAGAATTTGTCAACTTTAACAGGGTATGTGGTTCAAAGATTTAAAGATGAAAGTACCTGGGTGTTTACAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS-3UTR TCA 90 bp | AGCACAGCCTGGCCAGGCGTGCCCCACACTCCGGGATCACCCGCCCAAGGCCCAGGCAGCCAGCGCGTGTaGCCGGTAGCCGAAGGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: STAWPGVPHTPGSPAQGPGSQRV*PVAEGG Trigger: ACCGCCTTCGGCTACCGGTCACACGCGCTGGCTGCC...TGGGCCTTGGGCGGGTGATCCCGGAGTGTGGGGCACGCCTGGCCAGGCTGTGCT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS-3UTR TCA 90 bp | AGAGCCTTGAATGGAGAGGCTCCTTTTTGTGTGGTCCTTCCTCGGGAGCTGCCTCCGGGCCTCCCGCCTTaGCTGCGGCCGCCTGCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: RALNGEAPFCVVLPRELPPGLPP*LRPPAK Trigger: CTTTGCAGGCGGCCGCAGTCAAGGCGGGAGGCCCGG...AGGCAGCTCCCGAGGAAGGACCACACAAAAAGGAGCCTCTCCATTCAAGGCTCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS-3UTR TCA 90 bp | ACTGCAATTCCCTCCCGACAGCGCTTCGGTCATTTGTCTCCAAGCTCTACGGGGCCCGAGTGCGCCCGATaGGGCTCTCGATGGAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: TAIPSRQRFGHLSPSSTGPECAR*GSRWRR Trigger: CCTTCTCCATCGAGAGCCTCATCGGGCGCACTCGGG...CCCCGTAGAGCTTGGAGACAAATGACCGAAGCGCTGTCGGGAGGGAATTGCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS-3UTR CCA 90 bp | CTCTGTGCGTTGCACAAGTCTACCTTCAGGAGTGCCATGCCTCTGTATGGTTTGGGAGCGAGTAGCGGCTaGCGCTTGAAGCGCTTGCGG | + |
|
Preference number: 4 (lower is better) Translates to: LCALHKSTFRSAMPLYGLGASSG*RLKRLR Trigger: CCGCAAGCGCTTCAAGCGCCAGCCGCTACTCGCTCC...CAAACCATACAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR CAA 72 bp | ACCTTCAGGAGTGCCATGCCTCTGTATGGTTTGCCTTaGGATCCAGTCTGCGAACGCCTCTGCAAAAGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: TFRSAMPLYGLP*DPVCERLCKRA Trigger: AGCCCTTTTGCAGAGGCGTTCGCAGACTGGATCCAAAGGCAAACCATACAGAGGCATGGCACTCCTGAAGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS-3UTR TCA 90 bp | GCTGACCCAAAGCATTCAAATTATGTGTTACATATGCACCCATCTGCTATAAGCGTAGCGGCTGGCGCTTaGAGCGCTTGCGGCGCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: ADPKHSNYVLHMHPSAISVAAGA*SACGAA Trigger: TGCGGCGCCGCAAGCGCTTCAAGCGCCAGCCGCTAC...GCTTATAGCAGATGGGTGCATATGTAACACATAATTTGAATGCTTTGGGTCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS-3UTR CCA 90 bp | TTGCCTTTGCACTCAGAACTCATTTGTATAATTCCTGGACTCGCTTTTACCTTAGACAGCGCTGTCCCTTaGTGCAGAGTCCCCAGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: LPLHSELICIIPGLAFTLDSAVP*CRVPSA Trigger: CGCGCTGGGGACTCTGCACCAAGGGACAGCGCTGTC...TAAGGTAAAAGCGAGTCCAGGAATTATACAAATGAGTTCTGAGTGCAAAGGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR CAA 72 bp | ATAACTTTCAAATCTAAAAGTCGGCGGCTCTGTGCGTaGCACAAGTCTACCTTCAGGAGTGCCATGCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: ITFKSKSRRLCA*HKSTFRSAMPL Trigger: CAGAGGCATGGCACTCCTGAAGGTAGACTTGTGCAACGCACAGAGCCGCCGACTTTTAGATTTGAAAGTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR CAA 72 bp | TTTGTCCAACTGGTTTATTTTTCGAGACCCAGGCTATaGAGGAAGGCCTGTTCGAGCAGCCTTCTTGCCTAC | + |
|
Preference number: 4 (lower is better) Translates to: FVQLVYFSRPRL*RKACSSSLLAY Trigger: GTAGGCAAGAAGGCTGCTCGAACAGGCCTTCCTCAATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR CAA 72 bp | TTTGTAGTCGGGAGGAGGAGAGCTGGTGGCCAATGTTaGTCCAACTGGTTTATTTTTCGAGACCCAGGCTAT | + |
|
Preference number: 4 (lower is better) Translates to: FVVGRRRAGGQC*SNWFIFRDPGY Trigger: ATAGCCTGGGTCTCGAAAAATAAACCAGTTGGACAAACATTGGCCACCAGCTCTCCTCCTCCCGACTACAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| 3UTR CAA 72 bp | CATCTCCCTGATCTCAAAGATGGACAAAGCTTGGACTaGGAATTATCTAGCAAAGTAACGGCTTTCATTTGC | + |
|
Preference number: 4 (lower is better) Translates to: HLPDLKDGQSLD*ELSSKVTAFIC Trigger: GCAAATGAAAGCCGTTACTTTGCTAGATAATTCCAAGTCCAAGCTTTGTCCATCTTTGAGATCAGGGAGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| 3UTR CAA 72 bp | AATCCCAGGCATCTTGCCTTTGCACTCAGAACTCATTaGTATAATTCCTGGACTCGCTTTTACCTTAAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: NPRHLAFALRTH*YNSWTRFYLKD Trigger: GTCTTTAAGGTAAAAGCGAGTCCAGGAATTATACAAATGAGTTCTGAGTGCAAAGGCAAGATGCCTGGGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS TCA 90 bp | ACGAGACGTGCGCCCCGGCGGCCGCGGGACCCCGAGTGCGCCCGATaGGGCTCTCGATGGAGAAGGGCGAGCGTGCGAGCGCTGCGGCGC | + |
|
Preference number: 5 (lower is better) Translates to: TRRAPRRPRDPECAR*GSRWRRASVRALRR Trigger: GCGCCGCAGCGCTCGCACGCTCGCCCTTCTCCATCGAGAGCCTCATCGGGCGCACTCGGGGTCCCGCGGCCGCCGGGGCGCACGTCTCGT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS GCA 90 bp | ACCCCGAGTGCGCCCGATGAGGCTCTCGATGGAGAAGGGCGAGCGTaGGAGCGCTGCGGCGCCCGGGCCTCCCGCCTTGACTGCGGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: TPSAPDEALDGEGRA*ERCGARASRLDCGR Trigger: GCGGCCGCAGTCAAGGCGGGAGGCCCGGGCGCCGCAGCGCTCGCACGCTCGCCCTTCTCCATCGAGAGCCTCATCGGGCGCACTCGGGGT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS GCA 90 bp | GCGCCCGATGAGGCTCTCGATGGAGAAGGGCGAGCGTGCGAGCGCTaGGGCGCCCGGGCCTCCCGCCTTGACTGCGGCCGCCTGCAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: APDEALDGEGRACER*GARASRLDCGRLQR Trigger: CCTTTGCAGGCGGCCGCAGTCAAGGCGGGAGGCCCGGGCGCCGCAGCGCTCGCACGCTCGCCCTTCTCCATCGAGAGCCTCATCGGGCGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS GCA 90 bp | ATCCTAGCAGTAAAGTTCTCCACACTGGACAGCGCTGTCCCTTGGTaGAGAGTCCCCAGCGCGGCGGACGAGGACACGGAGGAGGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: ILAVKFSTLDSAVPW*RVPSAADEDTEEAA Trigger: CGCCGCCTCCTCCGTGTCCTCGTCCGCCGCGCTGGGGACTCTGCACCAAGGGACAGCGCTGTCCAGTGTGGAGAACTTTACTGCTAGGAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS-3UTR CAA 90 bp | AAACAAGCACCCAGCCTGACCAAAAGCAGGTTTGTGGTCTGCTGCCCGCGAGGGAGTAGCGGCTGGCGCTaGAAGCGCTTGCGGCGCCGC | + |
|
Preference number: 5 (lower is better) Translates to: KQAPSLTKSRFVVCCPRGSSGWR*KRLRRR Trigger: GCGGCGCCGCAAGCGCTTCAAGCGCCAGCCGCTACT...CCCTCGCGGGCAGCAGACCACAAACCTGCTTTTGGTCAGGCTGGGTGCTTGTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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| CDS CCA 90 bp | GAAATCCTAGCAGTAAAGTTCTCCACACTGGACAGCGCTGTCCCTTaGTGCAGAGTCCCCAGCGCGGCGGACGAGGACACGGAGGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: EILAVKFSTLDSAVP*CRVPSAADEDTEEA Trigger: CGCCTCCTCCGTGTCCTCGTCCGCCGCGCTGGGGACTCTGCACCAAGGGACAGCGCTGTCCAGTGTGGAGAACTTTACTGCTAGGATTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS-3UTR CAA 90 bp | AGAGCCTTGAATGGAGAGGCTCCTTTTTGTGTGGTCCTTCCTCGGGAGCTGCCTGGACAGCGCTGTCCCTaGGTGCAGAGTCCCCAGCGC | + |
|
Preference number: 5 (lower is better) Translates to: RALNGEAPFCVVLPRELPGQRCP*VQSPQR Trigger: GCGCTGGGGACTCTGCACCAAGGGACAGCGCTGTCC...AGGCAGCTCCCGAGGAAGGACCACACAAAAAGGAGCCTCTCCATTCAAGGCTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS CAA 90 bp | GAGAAGGGCGAGCGTGCGAGCGCTGCGGCGCCCGGGCCTCCCGCCTaGACTGCGGCCGCCTGCAAAGGGCCGGGCAGGGCGGCAGCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: EKGERASAAAPGPPA*TAAACKGPGRAAAS Trigger: GCTGGCTGCCGCCCTGCCCGGCCCTTTGCAGGCGGCCGCAGTCAAGGCGGGAGGCCCGGGCGCCGCAGCGCTCGCACGCTCGCCCTTCTC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS TCA 72 bp | GCGCCCCGGCGGCCGCGGGACCCCGAGTGCGCCCGATaGGGCTCTCGATGGAGAAGGGCGAGCGTGCGAGCG | + |
|
Preference number: 6 (lower is better) Translates to: APRRPRDPECAR*GSRWRRASVRA Trigger: CGCTCGCACGCTCGCCCTTCTCCATCGAGAGCCTCATCGGGCGCACTCGGGGTCCCGCGGCCGCCGGGGCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS TCA 72 bp | CTGCAAAGGGCCGGGCAGGGCGGCAGCCAGCGCGTGTaGCCGGTAGCCGAAGGCGGTCCGCGCCAGCTCGGC | + |
|
Preference number: 6 (lower is better) Translates to: LQRAGQGGSQRV*PVAEGGPRQLG Trigger: GCCGAGCTGGCGCGGACCGCCTTCGGCTACCGGTCACACGCGCTGGCTGCCGCCCTGCCCGGCCCTTTGCAG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS GCA 72 bp | GAGGCTCTCGATGGAGAAGGGCGAGCGTGCGAGCGCTaGGGCGCCCGGGCCTCCCGCCTTGACTGCGGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: EALDGEGRACER*GARASRLDCGR Trigger: GCGGCCGCAGTCAAGGCGGGAGGCCCGGGCGCCGCAGCGCTCGCACGCTCGCCCTTCTCCATCGAGAGCCTC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS GCA 72 bp | GTAAAGTTCTCCACACTGGACAGCGCTGTCCCTTGGTaGAGAGTCCCCAGCGCGGCGGACGAGGACACGGAG | + |
|
Preference number: 6 (lower is better) Translates to: VKFSTLDSAVPW*RVPSAADEDTE Trigger: CTCCGTGTCCTCGTCCGCCGCGCTGGGGACTCTGCACCAAGGGACAGCGCTGTCCAGTGTGGAGAACTTTAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS CCA 72 bp | GCAGTAAAGTTCTCCACACTGGACAGCGCTGTCCCTTaGTGCAGAGTCCCCAGCGCGGCGGACGAGGACACG | + |
|
Preference number: 6 (lower is better) Translates to: AVKFSTLDSAVP*CRVPSAADEDT Trigger: CGTGTCCTCGTCCGCCGCGCTGGGGACTCTGCACCAAGGGACAGCGCTGTCCAGTGTGGAGAACTTTACTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
||
| CDS CAA 90 bp | GGAAATCCTAGCAGTAAAGTTCTCCACACTGGACAGCGCTGTCCCTaGGTGCAGAGTCCCCAGCGCGGCGGACGAGGACACGGAGGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: GNPSSKVLHTGQRCP*VQSPQRGGRGHGGG Trigger: GCCTCCTCCGTGTCCTCGTCCGCCGCGCTGGGGACTCTGCACCAAGGGACAGCGCTGTCCAGTGTGGAGAACTTTACTGCTAGGATTTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105098.6 |
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