RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FOXB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056829

Ensembl transcript IDs: ENSMUST00000072915.4

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CCCGTAGGGTGGGAACTGAGACAGACGCCCCACGCTGCCCACCGCTaGGGCCGCCGCCGCTGCTGCGGCCGCCGCCACGGCCGCCGCCTC +
Preference number: 5 (lower is better)
Translates to: PVGWELRQTPHAAHR*GRRRCCGRRHGRRL
Trigger: GAGGCGGCGGCCGTGGCGGCGGCCGCAGCAGCGGCGGCGGCCGCAGCGGTGGGCAGCGTGGGGCGTCTGTCTCAGTTCCCACCCTACGGG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 90 bp GGCGGCTGCAGCGGCGGCGGCGGCGGCCGAGCCCAGCCCGTAGGGTaGGAACTGAGACAGACGCCCCACGCTGCCCACCGCTGCGGCCGC +
Preference number: 5 (lower is better)
Translates to: GGCSGGGGGRAQPVG*ELRQTPHAAHRCGR
Trigger: GCGGCCGCAGCGGTGGGCAGCGTGGGGCGTCTGTCTCAGTTCCCACCCTACGGGCTGGGCTCGGCCGCCGCCGCCGCCGCTGCAGCCGCC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp GACGTCTGCGGAGGCTGCGACTGCGGCTGTGGCTGCTGCGCGGGCTaGGACGGGAGGTGTGGAGGCTGCGGAGCCGGAGCCGGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: DVCGGCDCGCGCCAG*DGRCGGCGAGAGCW
Trigger: CCAGCAGCCGGCTCCGGCTCCGCAGCCTCCACACCTCCCGTCGCAGCCCGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTC
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp CCGGGATGGGACGTCTGCGGAGGCTGCGACTGCGGCTGTGGCTGCTaGGCGGGCTGCGACGGGAGGTGTGGAGGCTGCGGAGCCGGAGCC +
Preference number: 5 (lower is better)
Translates to: PGWDVCGGCDCGCGC*AGCDGRCGGCGAGA
Trigger: GGCTCCGGCTCCGCAGCCTCCACACCTCCCGTCGCAGCCCGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCCGG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp GGTGAGGCGGCGGCCGCGCACACGGTGGAGGGAGCAGGCAGCTGCTaGGACGCCGTGGGGACAGACAACGCCGGCGGCAGCGTGGTCACG +
Preference number: 5 (lower is better)
Translates to: GEAAAAHTVEGAGSC*DAVGTDNAGGSVVT
Trigger: CGTGACCACGCTGCCGCCGGCGTTGTCTGTCCCCACGGCGTCGCAGCAGCTGCCTGCTCCCTCCACCGTGTGCGCGGCCGCCGCCTCACC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp GTGGGTGAGGCGGCGGCCGCGCACACGGTGGAGGGAGCAGGCAGCTaGTGCGACGCCGTGGGGACAGACAACGCCGGCGGCAGCGTGGTC +
Preference number: 5 (lower is better)
Translates to: VGEAAAAHTVEGAGS*CDAVGTDNAGGSVV
Trigger: GACCACGCTGCCGCCGGCGTTGTCTGTCCCCACGGCGTCGCAGCAGCTGCCTGCTCCCTCCACCGTGTGCGCGGCCGCCGCCTCACCCAC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 90 bp CGGCCGCGCACACGGTGGAGGGAGCAGGCAGCTGCTGCGACGCCGTaGGGACAGACAACGCCGGCGGCAGCGTGGTCACGGGTGGTAGCG +
Preference number: 5 (lower is better)
Translates to: RPRTRWREQAAAATP*GQTTPAAAWSRVVA
Trigger: CGCTACCACCCGTGACCACGCTGCCGCCGGCGTTGTCTGTCCCCACGGCGTCGCAGCAGCTGCCTGCTCCCTCCACCGTGTGCGCGGCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp GCCGCCGCCTCCTGCATCTTGCCGGGATGGGACGTCTGCGGAGGCTaGGACTGCGGCTGTGGCTGCTGCGCGGGCTGCGACGGGAGGTGT +
Preference number: 5 (lower is better)
Translates to: AAASCILPGWDVCGG*DCGCGCCAGCDGRC
Trigger: ACACCTCCCGTCGCAGCCCGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCCGGCAAGATGCAGGAGGCGGCGGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp GCCTCCTGCATCTTGCCGGGATGGGACGTCTGCGGAGGCTGCGACTaGGGCTGTGGCTGCTGCGCGGGCTGCGACGGGAGGTGTGGAGGC +
Preference number: 5 (lower is better)
Translates to: ASCILPGWDVCGGCD*GCGCCAGCDGRCGG
Trigger: GCCTCCACACCTCCCGTCGCAGCCCGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCCGGCAAGATGCAGGAGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 90 bp GCTCCAAGAGAGGGGCTGTGGGTGAGGCGGCGGCCGCGCACACGGTaGAGGGAGCAGGCAGCTGCTGCGACGCCGTGGGGACAGACAACG +
Preference number: 5 (lower is better)
Translates to: APREGLWVRRRPRTR*REQAAAATPWGQTT
Trigger: CGTTGTCTGTCCCCACGGCGTCGCAGCAGCTGCCTGCTCCCTCCACCGTGTGCGCGGCCGCCGCCTCACCCACAGCCCCTCTCTTGGAGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 90 bp CCGAGTGTAGGGAGCTCCCCTTGCTGTCAGCCCTGCCGGCTGCGGTaGGCTCCAAGAGAGGGGCTGTGGGTGAGGCGGCGGCCGCGCACA +
Preference number: 5 (lower is better)
Translates to: PSVGSSPCCQPCRLR*APREGLWVRRRPRT
Trigger: TGTGCGCGGCCGCCGCCTCACCCACAGCCCCTCTCTTGGAGCCCACCGCAGCCGGCAGGGCTGACAGCAAGGGGAGCTCCCTACACTCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp CTCTATGGCGAACGGATGTTTGAAGCCTGTGGTGGACGCGGCGGCTaGAGCGGCGGCGGCGGCGGCCGAGCCCAGCCCGTAGGGTGGGAA +
Preference number: 5 (lower is better)
Translates to: LYGERMFEACGGRGG*SGGGGGRAQPVGWE
Trigger: TTCCCACCCTACGGGCTGGGCTCGGCCGCCGCCGCCGCCGCTGCAGCCGCCGCGTCCACCACAGGCTTCAAACATCCGTTCGCCATAGAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 90 bp GCTCTGGTTTGCCGAGTGGCACAGAGCCTTGACTGGCACCCCGAATaGCCCATACTCCGGGCCTACCGGGACCCCAGCTGCGGCGGCAGC +
Preference number: 5 (lower is better)
Translates to: ALVCRVAQSLDWHPE*PILRAYRDPSCGGS
Trigger: GCTGCCGCCGCAGCTGGGGTCCCGGTAGGCCCGGAGTATGGGGCATTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS TCA 90 bp GCGGCAGCAGCGGCAGCCGCGGCTACCGAATCCATCACGCCAACATaGGGCCACACGGAGCCGACAACATTGCTGAGCTGGCCCGGCACG +
Preference number: 5 (lower is better)
Translates to: AAAAAAAATESITPT*GHTEPTTLLSWPGT
Trigger: CGTGCCGGGCCAGCTCAGCAATGTTGTCGGCTCCGTGTGGCCTCATGTTGGCGTGATGGATTCGGTAGCCGCGGCTGCCGCTGCTGCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 90 bp GGCTTGATGGGCACCGGTACAGCTGGCAGGCTCTGGTTTGCCGAGTaGCACAGAGCCTTGACTGGCACCCCGAATGCCCCATACTCCGGG +
Preference number: 5 (lower is better)
Translates to: GLMGTGTAGRLWFAE*HRALTGTPNAPYSG
Trigger: CCCGGAGTATGGGGCATTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGCCTGCCAGCTGTACCGGTGCCCATCAAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp GCGGCGGCCGCGCACACGGTGGAGGGAGCAGGCAGCTaGTGCGACGCCGTGGGGACAGACAACGCCGGCGGC +
Preference number: 6 (lower is better)
Translates to: AAAAHTVEGAGS*CDAVGTDNAGG
Trigger: GCCGCCGGCGTTGTCTGTCCCCACGGCGTCGCAGCAGCTGCCTGCTCCCTCCACCGTGTGCGCGGCCGCCGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 72 bp GAGGGGCTGTGGGTGAGGCGGCGGCCGCGCACACGGTaGAGGGAGCAGGCAGCTGCTGCGACGCCGTGGGGA +
Preference number: 6 (lower is better)
Translates to: EGLWVRRRPRTR*REQAAAATPWG
Trigger: TCCCCACGGCGTCGCAGCAGCTGCCTGCTCCCTCCACCGTGTGCGCGGCCGCCGCCTCACCCACAGCCCCTC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 72 bp GCCGCCACGGCCGCCGCCTCCTGCATCTTGCCGGGATaGGACGTCTGCGGAGGCTGCGACTGCGGCTGTGGC +
Preference number: 6 (lower is better)
Translates to: AATAAASCILPG*DVCGGCDCGCG
Trigger: GCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCCGGCAAGATGCAGGAGGCGGCGGCCGTGGCGGC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp GCCGCCGCCTCCTGCATCTTGCCGGGATGGGACGTCTaGGGAGGCTGCGACTGCGGCTGTGGCTGCTGCGCG +
Preference number: 6 (lower is better)
Translates to: AAASCILPGWDV*GGCDCGCGCCA
Trigger: CGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCCGGCAAGATGCAGGAGGCGGCGGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 72 bp GGGATGGGACGTCTGCGGAGGCTGCGACTGCGGCTGTaGCTGCTGCGCGGGCTGCGACGGGAGGTGTGGAGG +
Preference number: 6 (lower is better)
Translates to: GMGRLRRLRLRL*LLRGLRREVWR
Trigger: CCTCCACACCTCCCGTCGCAGCCCGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp ATCTTGCCGGGATGGGACGTCTGCGGAGGCTGCGACTaGGGCTGTGGCTGCTGCGCGGGCTGCGACGGGAGG +
Preference number: 6 (lower is better)
Translates to: ILPGWDVCGGCD*GCGCCAGCDGR
Trigger: CCTCCCGTCGCAGCCCGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCCGGCAAGAT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 72 bp ACACGGTGGAGGGAGCAGGCAGCTGCTGCGACGCCGTaGGGACAGACAACGCCGGCGGCAGCGTGGTCACGG +
Preference number: 6 (lower is better)
Translates to: TRWREQAAAATP*GQTTPAAAWSR
Trigger: CCGTGACCACGCTGCCGCCGGCGTTGTCTGTCCCCACGGCGTCGCAGCAGCTGCCTGCTCCCTCCACCGTGT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp GCAGGTGACCTCCTGGCCCCGTGCCGGGCGCGCCCTTaGTGCTTCCTGAGTGTAGGTGAGCGTGGTCTGCGC +
Preference number: 6 (lower is better)
Translates to: AGDLLAPCRARP*CFLSVGERGLR
Trigger: GCGCAGACCACGCTCACCTACACTCAGGAAGCAGCAAGGGCGCGCCCGGCACGGGGCCAGGAGGTCACCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp TCCTGCATCTTGCCGGGATGGGACGTCTGCGGAGGCTaGGACTGCGGCTGTGGCTGCTGCGCGGGCTGCGAC +
Preference number: 6 (lower is better)
Translates to: SCILPGWDVCGG*DCGCGCCAGCD
Trigger: GTCGCAGCCCGCGCAGCAGCCACAGCCGCAGTCGCAGCCTCCGCAGACGTCCCATCCCGGCAAGATGCAGGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CAA 90 bp AACGCCGGCGGCAGCGTGGTCACGGGTGGTAGCGCAGGCGTGGGCTaGATGGGCACCGGTACAGCTGGCAGGCTCTGGTTTGCCGAGTGG +
Preference number: 6 (lower is better)
Translates to: NAGGSVVTGGSAGVG*MGTGTAGRLWFAEW
Trigger: CCACTCGGCAAACCAGAGCCTGCCAGCTGTACCGGTGCCCATCAAGCCCACGCCTGCGCTACCACCCGTGACCACGCTGCCGCCGGCGTT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp TGCCGAGTGGCACAGAGCCTTGACTGGCACCCCGAATaGCCCATACTCCGGGCCTACCGGGACCCCAGCTGC +
Preference number: 6 (lower is better)
Translates to: CRVAQSLDWHPE*PILRAYRDPSC
Trigger: GCAGCTGGGGTCCCGGTAGGCCCGGAGTATGGGGCATTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp GTGTGCGGCGTGGTGGTGATGGTGGTGGTGGTGGTGTaGGTGGTGGGGATGGTGGGGATGCAGGTGACCTCC +
Preference number: 6 (lower is better)
Translates to: VCGVVVMVVVVV*VVGMVGMQVTS
Trigger: GGAGGTCACCTGCATCCCCACCATCCCCACCACGCACACCACCACCACCACCATCACCACCACGCCGCACAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CAA 72 bp GGCAGCGTGGTCACGGGTGGTAGCGCAGGCGTGGGCTaGATGGGCACCGGTACAGCTGGCAGGCTCTGGTTT +
Preference number: 6 (lower is better)
Translates to: GSVVTGGSAGVG*MGTGTAGRLWF
Trigger: AAACCAGAGCCTGCCAGCTGTACCGGTGCCCATCAAGCCCACGCCTGCGCTACCACCCGTGACCACGCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CAA 90 bp ACCGGTACAGCTGGCAGGCTCTGGTTTGCCGAGTGGCACAGAGCCTaGACTGGCACCCCGAATGCCCCATACTCCGGGCCTACCGGGACC +
Preference number: 6 (lower is better)
Translates to: TGTAGRLWFAEWHRA*TGTPNAPYSGPTGT
Trigger: GGTCCCGGTAGGCCCGGAGTATGGGGCATTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGCCTGCCAGCTGTACCGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS TCA 72 bp GTGCCGGGCGCGCCCTTGCTGCTTCCTGAGTGTAGGTaGGCGTGGTCTGCGCGTAGCACCTTGAAGCGCTTG +
Preference number: 6 (lower is better)
Translates to: VPGAPLLLPECR*AWSARSTLKRL
Trigger: CAAGCGCTTCAAGGTGCTACGCGCAGACCACGCTCACCTACACTCAGGAAGCAGCAAGGGCGCGCCCGGCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS TCA 72 bp CGCCAACATGAGGCCACACGGAGCCGACAACATTGCTaGGCTGGCCCGGCACGGGGTAGCCCAAGTGGTGCA +
Preference number: 6 (lower is better)
Translates to: RQHEATRSRQHC*AGPARGSPSGA
Trigger: TGCACCACTTGGGCTACCCCGTGCCGGGCCAGCTCAGCAATGTTGTCGGCTCCGTGTGGCCTCATGTTGGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 72 bp CAGGCTCTGGTTTGCCGAGTGGCACAGAGCCTTGACTaGCACCCCGAATGCCCCATACTCCGGGCCTACCGG +
Preference number: 6 (lower is better)
Translates to: QALVCRVAQSLD*HPECPILRAYR
Trigger: CCGGTAGGCCCGGAGTATGGGGCATTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 72 bp GGCACCGGTACAGCTGGCAGGCTCTGGTTTGCCGAGTaGCACAGAGCCTTGACTGGCACCCCGAATGCCCCA +
Preference number: 6 (lower is better)
Translates to: GTGTAGRLWFAE*HRALTGTPNAP
Trigger: TGGGGCATTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGCCTGCCAGCTGTACCGGTGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CAA 72 bp GCTGGCAGGCTCTGGTTTGCCGAGTGGCACAGAGCCTaGACTGGCACCCCGAATGCCCCATACTCCGGGCCT +
Preference number: 6 (lower is better)
Translates to: AGRLWFAEWHRA*TGTPNAPYSGP
Trigger: AGGCCCGGAGTATGGGGCATTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGCCTGCCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS TCA 72 bp GCGGCAGCCGCGGCTACCGAATCCATCACGCCAACATaGGGCCACACGGAGCCGACAACATTGCTGAGCTGG +
Preference number: 6 (lower is better)
Translates to: AAAAATESITPT*GHTEPTTLLSW
Trigger: CCAGCTCAGCAATGTTGTCGGCTCCGTGTGGCCTCATGTTGGCGTGATGGATTCGGTAGCCGCGGCTGCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CCA 72 bp GTGGGCTTGATGGGCACCGGTACAGCTGGCAGGCTCTaGTTTGCCGAGTGGCACAGAGCCTTGACTGGCACC +
Preference number: 6 (lower is better)
Translates to: VGLMGTGTAGRL*FAEWHRALTGT
Trigger: GGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGCCTGCCAGCTGTACCGGTGCCCATCAAGCCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS CAA 72 bp TCCCGCCCGATGATGTTCTCTATGGCGAACGGATGTTaGAAGCCTGTGGTGGACGCGGCGGCTGCAGCGGCG +
Preference number: 6 (lower is better)
Translates to: SRPMMFSMANGC*KPVVDAAAAAA
Trigger: CGCCGCTGCAGCCGCCGCGTCCACCACAGGCTTCAAACATCCGTTCGCCATAGAGAACATCATCGGGCGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp CTTGATGGGCACCGGTACAGCTGGCAGGCTCTGGTTTaGCGAGTGGCACAGAGCCTTGACTGGCACCCCGAA +
Preference number: 6 (lower is better)
Translates to: LDGHRYSWQALV*RVAQSLDWHPE
Trigger: TTCGGGGTGCCAGTCAAGGCTCTGTGCCACTCGGCAAACCAGAGCCTGCCAGCTGTACCGGTGCCCATCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4
CDS GCA 72 bp AAGAATGCACCAACACCGAGTGTAGGGAGCTCCCCTTaGTGTCAGCCCTGCCGGCTGCGGTGGGCTCCAAGA +
Preference number: 6 (lower is better)
Translates to: KNAPTPSVGSSP*CQPCRLRWAPR
Trigger: TCTTGGAGCCCACCGCAGCCGGCAGGGCTGACAGCAAGGGGAGCTCCCTACACTCGGTGTTGGTGCATTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072915.4