Pregenerated sensors for FOXB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059246Ensembl transcript IDs: ENSMUST00000071281.5
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAGCGGTCCGCCCATCCCGGCCTGATGGGCGGAGGCGATCCCTTTaGAGGATCAGTGAGTTGGTCTTGTGGCCACAGATTTTCAGGACC | + |
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Preference number: 1 (lower is better) Translates to: VAVRPSRPDGRRRSL*RISELVLWPQIFRT Trigger: GGTCCTGAAAATCTGTGGCCACAAGACCAACTCACTGATCCTCCAAAGGGATCGCCTCCGCCCATCAGGCCGGGATGGGCGGACCGCTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CCA 90 bp | GGTCCCAGGAGGGACCGCTTGGCTTGGATTAGCCCCTGTTTTCTCTaGTGCCCTAGAGGGACCGAAGACAACTTTCACACGCCTTCCGGC | + |
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Preference number: 1 (lower is better) Translates to: GPRRDRLAWISPCFL*CPRGTEDNFHTPSG Trigger: GCCGGAAGGCGTGTGAAAGTTGTCTTCGGTCCCTCTAGGGCACCAGAGAAAACAGGGGCTAATCCAAGCCAAGCGGTCCCTCCTGGGACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CCA 90 bp | CCCGGCCTGATGGGCGGAGGCGATCCCTTTGGAGGATCAGTGAGTTaGTCTTGTGGCCACAGATTTTCAGGACCTAAGAAGATCCGGCCC | + |
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Preference number: 1 (lower is better) Translates to: PGLMGGGDPFGGSVS*SCGHRFSGPKKIRP Trigger: GGGCCGGATCTTCTTAGGTCCTGAAAATCTGTGGCCACAAGACCAACTCACTGATCCTCCAAAGGGATCGCCTCCGCCCATCAGGCCGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR GCA 90 bp | CCGGGCAGTGTCTCTGGTCTTGAAATTGCGCAGAGTCCAGAGCTATaGCTCTCCAAGCTCAGAAGACGAGTAGTTTTGTTGTTTTGTTTT | + |
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Preference number: 1 (lower is better) Translates to: PGSVSGLEIAQSPEL*LSKLRRRVVLLFCF Trigger: AAAACAAAACAACAAAACTACTCGTCTTCTGAGCTTGGAGAGGCATAGCTCTGGACTCTGCGCAATTTCAAGACCAGAGACACTGCCCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR GCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCCAGAGTCCAGAGCTATaGCTCTCCAAGCTCAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: QDLRRSGPLSAAAASAGFQSPEL*LSKLRR Trigger: TCTTCTGAGCTTGGAGAGGCATAGCTCTGGACTCTG...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGTTTTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTTGGATGGGAGGAGCAGGGAAGTGTTaGGAGGGGTGGTGTGGACCA | + |
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Preference number: 2 (lower is better) Translates to: FLFSPSRRESGCSACWMGGAGKC*EGWCGP Trigger: TGGTCCACACCACCCCTCTCAACACTTCCCTGCTCC...TCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAAAACAGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR TCA 90 bp | CACGGAAAAGTTCTTTTAACAGAAAGATCTGTCCAGAGGACATCTCTGCTGACACCGCCCATCCCGGCCTaGTGGGCGGAGGCGATCCCT | + |
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Preference number: 2 (lower is better) Translates to: HGKVLLTERSVQRTSLLTPPIPA*WAEAIP Trigger: AGGGATCGCCTCCGCCCATCAGGCCGGGATGGGCGG...TGTCAGCAGAGATGTCCTCTGGACAGATCTTTCTGTTAAAAGAACTTTTCCGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR CCA 90 bp | GCTGTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCAGGGACCGCTTGGCTTaGATTAGCCCCTGTTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: AVFCLCVGQASSGVLAASRDRLA*ISPCFL Trigger: GAGAAAACAGGGGCTAATCCAAGCCAAGCGGTCCCT...GGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACACAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR CCA 90 bp | CCACCCCCAAAGCTGGCCAGAAGAGCAAACATTCACATGACAACAGGTAATTGTCTGAAGAAGGTAGAATaGGCAAGTCGGGGTGGCGGT | + |
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Preference number: 2 (lower is better) Translates to: PPPKLARRANIHMTTGNCLKKVE*ASRGGG Trigger: ACCGCCACCCCGACTTGCCCATTCTACCTTCTTCAG...ACAATTACCTGTTGTCATGTGAATGTTTGCTCTTCTGGCCAGCTTTGGGGGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CAA 90 bp | AGGGACCGAAGACAACTTTCACACGCCTTCCGGCAAGTTTGTGGTTaGTCTTCTGGTTCCAAAACCAAAAGTTCTTCTAAGAGCGAGGAC | + |
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Preference number: 2 (lower is better) Translates to: RDRRQLSHAFRQVCG*SSGSKTKSSSKSED Trigger: GTCCTCGCTCTTAGAAGAACTTTTGGTTTTGGAACCAGAAGACAAACCACAAACTTGCCGGAAGGCGTGTGAAAGTTGTCTTCGGTCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR CCA 90 bp | CACGGAAAAGTTCTTTTAACAGAAAGATCTGTCCAGAGGACATCTCTGCTGACAAGCCCCTGTTTTCTCTaGTGCCCTAGAGGGACCGAA | + |
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Preference number: 2 (lower is better) Translates to: HGKVLLTERSVQRTSLLTSPCFL*CPRGTE Trigger: TTCGGTCCCTCTAGGGCACCAGAGAAAACAGGGGCT...TGTCAGCAGAGATGTCCTCTGGACAGATCTTTCTGTTAAAAGAACTTTTCCGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR CCA 90 bp | CCACCCCCAAAGCTGGCCAGAAGAGCAAACATTCACATGACAACAGGTAATTGTGGAGGATCAGTGAGTTaGTCTTGTGGCCACAGATTT | + |
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Preference number: 2 (lower is better) Translates to: PPPKLARRANIHMTTGNCGGSVS*SCGHRF Trigger: AAATCTGTGGCCACAAGACCAACTCACTGATCCTCC...ACAATTACCTGTTGTCATGTGAATGTTTGCTCTTCTGGCCAGCTTTGGGGGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR CCA 90 bp | CACGGAAAAGTTCTTTTAACAGAAAGATCTGTCCAGAGGACATCTCTGCTGACACTTCCGGCAAGTTTGTaGTTTGTCTTCTGGTTCCAA | + |
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Preference number: 2 (lower is better) Translates to: HGKVLLTERSVQRTSLLTLPASL*FVFWFQ Trigger: TTGGAACCAGAAGACAAACCACAAACTTGCCGGAAG...TGTCAGCAGAGATGTCCTCTGGACAGATCTTTCTGTTAAAAGAACTTTTCCGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR TCA 72 bp | AGGTCGCGGAGGGCTGGACCCGGAGCAGGGAAGTGTTaGGAGGGGTGGTGTGGACCAAGACGGAGCCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: RSRRAGPGAGKC*EGWCGPRRSPS Trigger: GCTGGGGCTCCGTCTTGGTCCACACCACCCCTCTCAACACTTCCCTGCTCCGGGTCCAGCCCTCCGCGACCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR GCA 72 bp | GGAGGGAGTCAGGGTGTTCTGCCTGTTGGATGGGAGTaGATTTCAGGGTCCCAGGAGGGACCGCTTGGCTTG | + |
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Preference number: 3 (lower is better) Translates to: GGSQGVLPVGWE*ISGSQEGPLGL Trigger: CAAGCCAAGCGGTCCCTCCTGGGACCCTGAAATGCACTCCCATCCAACAGGCAGAACACCCTGACTCCCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CCA 72 bp | CGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTTGGATaGGAGTGCATTTCAGGGTCCCAGGAGGGACCGCTT | + |
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Preference number: 3 (lower is better) Translates to: RAGGSQGVLPVG*ECISGSQEGPL Trigger: AAGCGGTCCCTCCTGGGACCCTGAAATGCACTCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR GCA 72 bp | TCTGTTTTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTaGCTGTTGGATGGGAGTGCATTTCAGGGTCCCAGG | + |
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Preference number: 3 (lower is better) Translates to: SVFSEQEGVRVF*LLDGSAFQGPR Trigger: CCTGGGACCCTGAAATGCACTCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAAAACAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CCA 72 bp | ATGGGAGTGCATTTCAGGGTCCCAGGAGGGACCGCTTaGCTTGGATTAGCCCCTGTTTTCTCTGGTGCCCTA | + |
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Preference number: 3 (lower is better) Translates to: MGVHFRVPGGTA*LGLAPVFSGAL Trigger: TAGGGCACCAGAGAAAACAGGGGCTAATCCAAGCCAAGCGGTCCCTCCTGGGACCCTGAAATGCACTCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR GCA 72 bp | GACCGCTTGGCTTGGATTAGCCCCTGTTTTCTCTGGTaGCCTAGAGGGACCGAAGACAACTTTCACACGCCT | + |
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Preference number: 3 (lower is better) Translates to: DRLAWISPCFLW*PRGTEDNFHTP Trigger: AGGCGTGTGAAAGTTGTCTTCGGTCCCTCTAGGGCACCAGAGAAAACAGGGGCTAATCCAAGCCAAGCGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CCA 72 bp | AGGGACCGCTTGGCTTGGATTAGCCCCTGTTTTCTCTaGTGCCCTAGAGGGACCGAAGACAACTTTCACACG | + |
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Preference number: 3 (lower is better) Translates to: RDRLAWISPCFL*CPRGTEDNFHT Trigger: CGTGTGAAAGTTGTCTTCGGTCCCTCTAGGGCACCAGAGAAAACAGGGGCTAATCCAAGCCAAGCGGTCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR CAA 90 bp | TTTCTGTTTTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTTGGATGGGACGCCTTCCGGCAAGTTaGTGGTTTGTCTTCTGGTTC | + |
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Preference number: 3 (lower is better) Translates to: FLFSPSRRESGCSACWMGRLPAS*WFVFWF Trigger: GAACCAGAAGACAAACCACAAACTTGCCGGAAGGCG...TCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAAAACAGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CCA 72 bp | ATGGGCGGAGGCGATCCCTTTGGAGGATCAGTGAGTTaGTCTTGTGGCCACAGATTTTCAGGACCTAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: MGGGDPFGGSVS*SCGHRFSGPKK Trigger: CTTCTTAGGTCCTGAAAATCTGTGGCCACAAGACCAACTCACTGATCCTCCAAAGGGATCGCCTCCGCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR-3UTR CAA 90 bp | CCACCCCCAAAGCTGGCCAGAAGAGCAAACATTCACATGACAACAGGTAATTGTAGGGTGTTCTGCCTGTaGGATGGGAGTGCATTTCAG | + |
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Preference number: 3 (lower is better) Translates to: PPPKLARRANIHMTTGNCRVFCL*DGSAFQ Trigger: CTGAAATGCACTCCCATCCAACAGGCAGAACACCCT...ACAATTACCTGTTGTCATGTGAATGTTTGCTCTTCTGGCCAGCTTTGGGGGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR TCA 72 bp | CACCCCCAAAGCTGGCCAGAAGAGCAAACATTCACATaGCAACAGGTAATTGTAAAGAGGACTCTACCCCCT | + |
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Preference number: 3 (lower is better) Translates to: HPQSWPEEQTFT*QQVIVKRTLPP Trigger: AGGGGGTAGAGTCCTCTTTACAATTACCTGTTGTCATGTGAATGTTTGCTCTTCTGGCCAGCTTTGGGGGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CCA 72 bp | CCGAAGACAACTTTCACACGCCTTCCGGCAAGTTTGTaGTTTGTCTTCTGGTTCCAAAACCAAAAGTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: PKTTFTRLPASL*FVFWFQNQKFF Trigger: GAAGAACTTTTGGTTTTGGAACCAGAAGACAAACCACAAACTTGCCGGAAGGCGTGTGAAAGTTGTCTTCGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR GCA 72 bp | TTTACACAGTGTAAATCATTCCTATTTACAACTCTTTaGAGCCCTTTAGCTTCACGGAAAAGTTCTTTTAAC | + |
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Preference number: 3 (lower is better) Translates to: FTQCKSFLFTTL*SPLASRKSSFN Trigger: GTTAAAAGAACTTTTCCGTGAAGCTAAAGGGCTGCAAAGAGTTGTAAATAGGAATGATTTACACTGTGTAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCGGCATCTGCGGCAGATaGGTGCCCGAGGCGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: QDLRRSGPLSAAAASAGFGICGR*VPEAAS Trigger: GCTGGCCGCCTCGGGCACGCATCTGCCGCAGATGCC...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCTGCACGGCCACCGAGTaGAAGGCGGAGGCCGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: QDLRRSGPLSAAAASAGFCTATE*KAEAGL Trigger: CAGCCCGGCCTCCGCCTTGCACTCGGTGGCCGTGCA...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCCGGGGCTGCTTTGGCTaGTGGCTGTCTGCGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: QDLRRSGPLSAAAASAGFRGCFG*WLSARR Trigger: CCTCCTCGCAGACAGCCACCAGCCAAAGCAGCCCCG...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR TCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCGGAGATGGGGGTGGCTaGGTCGATCATACCCGCGGA | + |
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Preference number: 4 (lower is better) Translates to: QDLRRSGPLSAAAASAGFGDGGG*VDHTRG Trigger: TCCGCGGGTATGATCGACTCAGCCACCCCCATCTCC...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCAGCCGCAGCTTAGCCTaGTGCTGGAGGTACTGCGCG | + |
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Preference number: 4 (lower is better) Translates to: QDLRRSGPLSAAAASAGFSRSLA*CWRYCA Trigger: CGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCT...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCAGCTTAGCCTGCTGCTaGAGGTACTGCGCGGCGTCC | + |
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Preference number: 4 (lower is better) Translates to: QDLRRSGPLSAAAASAGFSLACC*RYCAAS Trigger: GGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCT...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | CAGGACCTAAGAAGATCCGGCCCTCTTAGTGCGGCTGCAGCCTCGGCGGGCTTCGGCTGCTTTGGCTGGTaGCTGTCTGCGAGGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: QDLRRSGPLSAAAASAGFGCFGW*LSARRW Trigger: CCACCTCCTCGCAGACAGCCACCAGCCAAAGCAGCC...GAAGCCCGCCGAGGCTGCAGCCGCACTAAGAGGGCCGGATCTTCTTAGGTCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | GAGTCAGGGTGTTCTGCCTGTTGGATGGGAGTGCATTTCAGGGTCCCAGGAGGGGCAGCCGGAACCGGCTaGATGGCAGAGAAGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ESGCSACWMGVHFRVPGGAAGTG*MAEKAS Trigger: GCTGGCCTTCTCTGCCATGCAGCCGGTTCCGGCTGC...CCCTCCTGGGACCCTGAAATGCACTCCCATCCAACAGGCAGAACACCCTGACTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCGTCTGGCCCGCGGCGTaGCACAGCGGCTTCAGCGGC | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLVWPAA*HSGFSG Trigger: GCCGCTGAAGCCGCTGTGCCACGCCGCGGGCCAGAC...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | TTTCTGTTTTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTTGGATGGGAATGGCGGGCAACGTCTaGCCCGCGGCGTGGCACAGC | + |
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Preference number: 4 (lower is better) Translates to: FLFSPSRRESGCSACWMGMAGNV*PAAWHS Trigger: GCTGTGCCACGCCGCGGGCCAGACGTTGCCCGCCAT...TCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAAAACAGAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR TCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCGCGAGGAGGTGGGGCTaGGCGAAGGCGGCGAGTTCG | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLARRWG*AKAASS Trigger: CGAACTCGCCGCCTTCGCTCAGCCCCACCTCCTCGC...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCCCCAGAAGCTGCCCTTaGCCGGCTGGTCTGGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLPRSCP*PAGLAA Trigger: GGCGGCCAGACCAGCCGGGCAAGGGCAGCTTCTGGG...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCGCAGCGGCCGGCATCTaGGGCAGATGCGTGCCCGAG | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLAAAGI*GRCVPE Trigger: CTCGGGCACGCATCTGCCGCAGATGCCGGCCGCTGC...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCTGGCAGCGCGGGCACTaGGGCCGGCGTGGGCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLWQRGH*GRRGLD Trigger: ATCAAGCCCACGCCGGCCGCAGTGCCCGCGCTGCCA...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | GCTGTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTGCCCTTGCCCGGCTaGTCTGGCCGCCTCGGGATC | + |
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Preference number: 4 (lower is better) Translates to: AVFCLCVGQASSGVLAASLPLPG*SGRLGI Trigger: GATCCCGAGGCGGCCAGACCAGCCGGGCAAGGGCAG...GGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACACAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CAA 72 bp | TTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTaGGATGGGAGTGCATTTCAGGGTCCCAGGAGGGAC | + |
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Preference number: 4 (lower is better) Translates to: FSEQEGVRVFCL*DGSAFQGPRRD Trigger: GTCCCTCCTGGGACCCTGAAATGCACTCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCCGTCCGCCGGCTTGCTaGGCGCCAGGTGGTCTGACT | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLRPPAC*APGGLT Trigger: AGTCAGACCACCTGGCGCCCAGCAAGCCGGCGGACG...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCAGAGCAGGGTGGGGATaGGTGCGGGCAGAGCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLRAGWG*VRAELA Trigger: TGCCAGCTCTGCCCGCACCCATCCCCACCCTGCTCT...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | TTTCTGTTTTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTTGGATGGGAAGTTCGAGAGCAGGGTaGGGATGGGTGCGGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: FLFSPSRRESGCSACWMGSSRAG*GWVRAE Trigger: CTCTGCCCGCACCCATCCCCACCCTGCTCTCGAACT...TCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAAAACAGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | GCTGTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCGTGGCGGGGCTGCTTTaGCTGGTGGCTGTCTGCGAG | + |
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Preference number: 4 (lower is better) Translates to: AVFCLCVGQASSGVLAASVAGLL*LVAVCE Trigger: CTCGCAGACAGCCACCAGCCAAAGCAGCCCCGCCAC...GGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CAA 72 bp | GATGGGAGTGCATTTCAGGGTCCCAGGAGGGACCGCTaGGCTTGGATTAGCCCCTGTTTTCTCTGGTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: DGSAFQGPRRDR*AWISPCFLWCP Trigger: AGGGCACCAGAGAAAACAGGGGCTAATCCAAGCCAAGCGGTCCCTCCTGGGACCCTGAAATGCACTCCCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR TCA 90 bp | GCTGTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCGGGCGCCAGGTGGTCTaGCTTGAGCACCTTGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: AVFCLCVGQASSGVLAASGRQVV*LEHLEA Trigger: CGCTTCAAGGTGCTCAAGTCAGACCACCTGGCGCCC...GGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACACAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | GTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCCTCCTTGCCCGGCTGGTCTaGCCGCCTCGGGATCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: VFCLCVGQASSGVLAASLLARLV*PPRDLD Trigger: ATCAAGATCCCGAGGCGGCCAGACCAGCCGGGCAAG...GAGGGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | CCACCCCCAAAGCTGGCCAGAAGAGCAAACATTCACATGACAACAGGTAATTGTCCGGAACCGGCTGCATaGCAGAGAAGGCCAGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: PPPKLARRANIHMTTGNCPEPAA*QRRPAP Trigger: GGGGGCTGGCCTTCTCTGCCATGCAGCCGGTTCCGG...ACAATTACCTGTTGTCATGTGAATGTTTGCTCTTCTGGCCAGCTTTGGGGGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | CACGGAAAAGTTCTTTTAACAGAAAGATCTGTCCAGAGGACATCTCTGCTGACACGGCGTCCGCCGGCTTaGTGGGCGCCAGGTGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: HGKVLLTERSVQRTSLLTRRPPA*WAPGGL Trigger: CAGACCACCTGGCGCCCAGCAAGCCGGCGGACGCCG...TGTCAGCAGAGATGTCCTCTGGACAGATCTTTCTGTTAAAAGAACTTTTCCGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR GCA 90 bp | CCACCCCCAAAGCTGGCCAGAAGAGCAAACATTCACATGACAACAGGTAATTGTCGCAGCTTAGCCTGCTaGTGGAGGTACTGCGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: PPPKLARRANIHMTTGNCRSLAC*WRYCAA Trigger: CGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCG...ACAATTACCTGTTGTCATGTGAATGTTTGCTCTTCTGGCCAGCTTTGGGGGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | TTTCTGTTTTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTTGGATGGGATTGCTGGGCGCCAGGTaGTCTGACTTGAGCACCTTG | + |
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Preference number: 4 (lower is better) Translates to: FLFSPSRRESGCSACWMGLLGAR*SDLSTL Trigger: CAAGGTGCTCAAGTCAGACCACCTGGCGCCCAGCAA...TCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAAAACAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CCA 90 bp | GCTGTGTTTTGCTTGTGTGTAGGACAAGCATCCTCCGGAGTTTTAGCAGCCTCCTCATGGAGATGGGGGTaGCTGAGTCGATCATACCCG | + |
|
Preference number: 4 (lower is better) Translates to: AVFCLCVGQASSGVLAASSWRWG*LSRSYP Trigger: CGGGTATGATCGACTCAGCCACCCCCATCTCCATGA...GGAGGCTGCTAAAACTCCGGAGGATGCTTGTCCTACACACAAGCAAAACACAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| 3UTR CAA 72 bp | GGACCGAAGACAACTTTCACACGCCTTCCGGCAAGTTaGTGGTTTGTCTTCTGGTTCCAAAACCAAAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: GPKTTFTRLPAS*WFVFWFQNQKF Trigger: GAACTTTTGGTTTTGGAACCAGAAGACAAACCACAAACTTGCCGGAAGGCGTGTGAAAGTTGTCTTCGGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CCA 90 bp | GTGCCCGAGGCGGCCAGCGCGCTGAGCCGCAGCTTAGCCTGCTGCTaGAGGTACTGCGCGGCGTCCGCCGGCTTGCTGGGCGCCAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: VPEAASALSRSLACC*RYCAASAGLLGARW Trigger: CCACCTGGCGCCCAGCAAGCCGGCGGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCTCAGCGCGCTGGCCGCCTCGGGCAC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 90 bp | AGATGCGTGCCCGAGGCGGCCAGCGCGCTGAGCCGCAGCTTAGCCTaGTGCTGGAGGTACTGCGCGGCGTCCGCCGGCTTGCTGGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: RCVPEAASALSRSLA*CWRYCAASAGLLGA Trigger: GGCGCCCAGCAAGCCGGCGGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCTCAGCGCGCTGGCCGCCTCGGGCACGCATCT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 90 bp | GAAGGCTGCGCCACACCGCCCAGGTTGTACGCAGCGGCCGGCATCTaGGGCAGATGCGTGCCCGAGGCGGCCAGCGCGCTGAGCCGCAGC | + |
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Preference number: 5 (lower is better) Translates to: EGCATPPRLYAAAGI*GRCVPEAASALSRS Trigger: GCTGCGGCTCAGCGCGCTGGCCGCCTCGGGCACGCATCTGCCGCAGATGCCGGCCGCTGCGTACAACCTGGGCGGTGTGGCGCAGCCTTC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 90 bp | GCCACACCGCCCAGGTTGTACGCAGCGGCCGGCATCTGCGGCAGATaGGTGCCCGAGGCGGCCAGCGCGCTGAGCCGCAGCTTAGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: ATPPRLYAAAGICGR*VPEAASALSRSLAC Trigger: GCAGGCTAAGCTGCGGCTCAGCGCGCTGGCCGCCTCGGGCACGCATCTGCCGCAGATGCCGGCCGCTGCGTACAACCTGGGCGGTGTGGC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 90 bp | GCGGCCAGCGCGCTGAGCCGCAGCTTAGCCTGCTGCTGGAGGTACTaGGCGGCGTCCGCCGGCTTGCTGGGCGCCAGGTGGTCTGACTTG | + |
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Preference number: 5 (lower is better) Translates to: AASALSRSLACCWRY*AASAGLLGARWSDL Trigger: CAAGTCAGACCACCTGGCGCCCAGCAAGCCGGCGGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCTCAGCGCGCTGGCCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CAA 90 bp | TTTCTGTTTTCTCCGAGCAGGAGGGAGTCAGGGTGTTCTGCCTGTTGGATGGGAGCGGCCGGCGTGGGCTaGATGGGCACTGGGATGGCG | + |
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Preference number: 5 (lower is better) Translates to: FLFSPSRRESGCSACWMGAAGVG*MGTGMA Trigger: CGCCATCCCAGTGCCCATCAAGCCCACGCCGGCCGC...TCCCATCCAACAGGCAGAACACCCTGACTCCCTCCTGCTCGGAGAAAACAGAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS TCA 90 bp | TCCATAGGCGCTGTAGTCGCCACTAGTCATGGAGATGGGGGTGGCTaGGTCGATCATACCCGCGGAACCGTACACATGTGGCCATCCAGT | + |
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Preference number: 5 (lower is better) Translates to: SIGAVVATSHGDGGG*VDHTRGTVHMWPSS Trigger: ACTGGATGGCCACATGTGTACGGTTCCGCGGGTATGATCGACTCAGCCACCCCCATCTCCATGACTAGTGGCGACTACAGCGCCTATGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 90 bp | GGCATCTTGTACTCCCTAGCGATGATGTTCTCGATAGCAAAGGGATaGTTGAAGCCGGAAGGCTGCGCCACACCGCCCAGGTTGTACGCA | + |
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Preference number: 5 (lower is better) Translates to: GILYSLAMMFSIAKG*LKPEGCATPPRLYA Trigger: TGCGTACAACCTGGGCGGTGTGGCGCAGCCTTCCGGCTTCAAGCATCCCTTTGCTATCGAGAACATCATCGCTAGGGAGTACAAGATGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CAA 90 bp | CACGGAAAAGTTCTTTTAACAGAAAGATCTGTCCAGAGGACATCTCTGCTGACAGCGGCGTCCGCCGGCTaGCTGGGCGCCAGGTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: HGKVLLTERSVQRTSLLTAASAG*LGARWS Trigger: AGACCACCTGGCGCCCAGCAAGCCGGCGGACGCCGC...TGTCAGCAGAGATGTCCTCTGGACAGATCTTTCTGTTAAAAGAACTTTTCCGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CAA 90 bp | CCACCCCCAAAGCTGGCCAGAAGAGCAAACATTCACATGACAACAGGTAATTGTGGTGGCGGGGCTGCTTaGGCTGGTGGCTGTCTGCGA | + |
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Preference number: 5 (lower is better) Translates to: PPPKLARRANIHMTTGNCGGGAA*AGGCLR Trigger: TCGCAGACAGCCACCAGCCAAAGCAGCCCCGCCACC...ACAATTACCTGTTGTCATGTGAATGTTTGCTCTTCTGGCCAGCTTTGGGGGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS-3UTR CAA 90 bp | CACGGAAAAGTTCTTTTAACAGAAAGATCTGTCCAGAGGACATCTCTGCTGACAGCCAGGTGGTCTGACTaGAGCACCTTGAAGCGCTTG | + |
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Preference number: 5 (lower is better) Translates to: HGKVLLTERSVQRTSLLTARWSD*STLKRL Trigger: CAAGCGCTTCAAGGTGCTCAAGTCAGACCACCTGGC...TGTCAGCAGAGATGTCCTCTGGACAGATCTTTCTGTTAAAAGAACTTTTCCGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 72 bp | CCCGAGGCGGCCAGCGCGCTGAGCCGCAGCTTAGCCTaGTGCTGGAGGTACTGCGCGGCGTCCGCCGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: PEAASALSRSLA*CWRYCAASAGL Trigger: CAAGCCGGCGGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCTCAGCGCGCTGGCCGCCTCGGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 72 bp | CCCAGGTTGTACGCAGCGGCCGGCATCTGCGGCAGATaGGTGCCCGAGGCGGCCAGCGCGCTGAGCCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: PRLYAAAGICGR*VPEAASALSRS Trigger: GCTGCGGCTCAGCGCGCTGGCCGCCTCGGGCACGCATCTGCCGCAGATGCCGGCCGCTGCGTACAACCTGGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 72 bp | GCCACACCGCCCAGGTTGTACGCAGCGGCCGGCATCTaGGGCAGATGCGTGCCCGAGGCGGCCAGCGCGCTG | + |
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Preference number: 6 (lower is better) Translates to: ATPPRLYAAAGI*GRCVPEAASAL Trigger: CAGCGCGCTGGCCGCCTCGGGCACGCATCTGCCGCAGATGCCGGCCGCTGCGTACAACCTGGGCGGTGTGGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CCA 72 bp | GCGGCCAGCGCGCTGAGCCGCAGCTTAGCCTGCTGCTaGAGGTACTGCGCGGCGTCCGCCGGCTTGCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: AASALSRSLACC*RYCAASAGLLG Trigger: GCCCAGCAAGCCGGCGGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCTCAGCGCGCTGGCCGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 72 bp | GCGCTGAGCCGCAGCTTAGCCTGCTGCTGGAGGTACTaGGCGGCGTCCGCCGGCTTGCTGGGCGCCAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: ALSRSLACCWRY*AASAGLLGARW Trigger: CCACCTGGCGCCCAGCAAGCCGGCGGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCTCAGCGC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 72 bp | GAGGCGGCCAGCGCGCTGAGCCGCAGCTTAGCCTGCTaGTGGAGGTACTGCGCGGCGTCCGCCGGCTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: EAASALSRSLAC*WRYCAASAGLL Trigger: CAGCAAGCCGGCGGACGCCGCGCAGTACCTCCAGCAGCAGGCTAAGCTGCGGCTCAGCGCGCTGGCCGCCTC 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CAA 72 bp | AGAGCTGGCAGCGCGGGCACTGCGGCCGGCGTGGGCTaGATGGGCACTGGGATGGCGGGCAACGTCTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: RAGSAGTAAGVG*MGTGMAGNVWP Trigger: GGGCCAGACGTTGCCCGCCATCCCAGTGCCCATCAAGCCCACGCCGGCCGCAGTGCCCGCGCTGCCAGCTCT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CAA 90 bp | GCAAAGGGATGCTTGAAGCCGGAAGGCTGCGCCACACCGCCCAGGTaGTACGCAGCGGCCGGCATCTGCGGCAGATGCGTGCCCGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: AKGCLKPEGCATPPR*YAAAGICGRCVPEA Trigger: CGCCTCGGGCACGCATCTGCCGCAGATGCCGGCCGCTGCGTACAACCTGGGCGGTGTGGCGCAGCCTTCCGGCTTCAAGCATCCCTTTGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CCA 72 bp | TACTGCGCGGCGTCCGCCGGCTTGCTGGGCGCCAGGTaGTCTGACTTGAGCACCTTGAAGCGCTTGCGACGC | + |
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Preference number: 6 (lower is better) Translates to: YCAASAGLLGAR*SDLSTLKRLRR Trigger: GCGTCGCAAGCGCTTCAAGGTGCTCAAGTCAGACCACCTGGCGCCCAGCAAGCCGGCGGACGCCGCGCAGTA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CAA 72 bp | TGCTTGAAGCCGGAAGGCTGCGCCACACCGCCCAGGTaGTACGCAGCGGCCGGCATCTGCGGCAGATGCGTG | + |
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Preference number: 6 (lower is better) Translates to: CLKPEGCATPPR*YAAAGICGRCV Trigger: CACGCATCTGCCGCAGATGCCGGCCGCTGCGTACAACCTGGGCGGTGTGGCGCAGCCTTCCGGCTTCAAGCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS TCA 72 bp | TGCTTTGGCTGGTGGCTGTCTGCGAGGAGGTGGGGCTaGGCGAAGGCGGCGAGTTCGAGAGCAGGGTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: CFGWWLSARRWG*AKAASSRAGWG Trigger: TCCCCACCCTGCTCTCGAACTCGCCGCCTTCGCTCAGCCCCACCTCCTCGCAGACAGCCACCAGCCAAAGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS TCA 72 bp | GCTGTAGTCGCCACTAGTCATGGAGATGGGGGTGGCTaGGTCGATCATACCCGCGGAACCGTACACATGTGG | + |
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Preference number: 6 (lower is better) Translates to: AVVATSHGDGGG*VDHTRGTVHMW Trigger: CCACATGTGTACGGTTCCGCGGGTATGATCGACTCAGCCACCCCCATCTCCATGACTAGTGGCGACTACAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS GCA 72 bp | TACTCCCTAGCGATGATGTTCTCGATAGCAAAGGGATaGTTGAAGCCGGAAGGCTGCGCCACACCGCCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: YSLAMMFSIAKG*LKPEGCATPPR Trigger: CCTGGGCGGTGTGGCGCAGCCTTCCGGCTTCAAGCATCCCTTTGCTATCGAGAACATCATCGCTAGGGAGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CAA 72 bp | TCCCTAGCGATGATGTTCTCGATAGCAAAGGGATGCTaGAAGCCGGAAGGCTGCGCCACACCGCCCAGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: SLAMMFSIAKGC*KPEGCATPPRL Trigger: CAACCTGGGCGGTGTGGCGCAGCCTTCCGGCTTCAAGCATCCCTTTGCTATCGAGAACATCATCGCTAGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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| CDS CAA 90 bp | ATCTTGTACTCCCTAGCGATGATGTTCTCGATAGCAAAGGGATGCTaGAAGCCGGAAGGCTGCGCCACACCGCCCAGGTTGTACGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: ILYSLAMMFSIAKGC*KPEGCATPPRLYAA Trigger: CGCTGCGTACAACCTGGGCGGTGTGGCGCAGCCTTCCGGCTTCAAGCATCCCTTTGCTATCGAGAACATCATCGCTAGGGAGTACAAGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071281.5 |
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