Pregenerated sensors for FOXA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040891Ensembl transcript IDs: ENSMUST00000036018.6
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAGGAACTCCCGACACCCACACTAGCCCTTTCTCACAGACAGGGTaGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTCACCTCTT | + |
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Preference number: 1 (lower is better) Translates to: VGTPDTHTSPFSQTG*GWASEKTHRVCSPL Trigger: AAGAGGTGAGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAGGGCTAGTGTGGGTGTCGGGAGTTCCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR-3UTR GCA 90 bp | GAACTCCCGACACCCACACTAGCCCTTTCTCACAGACAGGGTGGGGATGGGCTTGCTGAGATGTCACCTTaGCAATACAGTGACCTTCCA | + |
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Preference number: 2 (lower is better) Translates to: ELPTPTLALSHRQGGDGLAEMSP*QYSDLP Trigger: TGGAAGGTCACTGTATTGGCAAGGTGACATCTCAGC...AAGCCCATCCCCACCCTGTCTGTGAGAAAGGGCTAGTGTGGGTGTCGGGAGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR-3UTR CCA 90 bp | TTCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTCACCATCAGGCACCCAGTaGATCAATCACCCAATGGCT | + |
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Preference number: 2 (lower is better) Translates to: FSQTGWGWASEKTHRVCSPSGTQ*INHPMA Trigger: AGCCATTGGGTGATTGATCCACTGGGTGCCTGATGG...TGAGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR-3UTR TCA 90 bp | TCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTCACGATCCCAGGATAAAATaGGCCAAAGAAGATGTGTTC | + |
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Preference number: 2 (lower is better) Translates to: SHRQGGDGLQRKLIGSAHDPRIK*AKEDVF Trigger: GAACACATCTTCTTTGGCTCATTTTATCCTGGGATC...GTGAGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR-3UTR TCA 90 bp | AGACACCATGTGATATGGTGGCCAATTTGGCATCTGCTGAACCAAGAAGTCTGCACAATATGTCCAACATaGCCACCTTCGCAGCACTTC | + |
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Preference number: 2 (lower is better) Translates to: RHHVIWWPIWHLLNQEVCTICPT*PPSQHF Trigger: GAAGTGCTGCGAAGGTGGTCATGTTGGACATATTGT...GCAGACTTCTTGGTTCAGCAGATGCCAAATTGGCCACCATATCACATGGTGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR-3UTR CCA 90 bp | CTTTCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTGGATCAATCACCCAATaGCTTCACTTAATATGGCAG | + |
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Preference number: 2 (lower is better) Translates to: LSHRQGGDGLQRKLIGSAGSITQ*LHLIWQ Trigger: CTGCCATATTAAGTGAAGCCATTGGGTGATTGATCC...AGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR CCA 72 bp | CCCGACACCCACACTAGCCCTTTCTCACAGACAGGGTaGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGC | + |
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Preference number: 3 (lower is better) Translates to: PDTHTSPFSQTG*GWASEKTHRVC Trigger: GCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAGGGCTAGTGTGGGTGTCGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR CCA 72 bp | ACCCACACTAGCCCTTTCTCACAGACAGGGTGGGGATaGGCTTCAGAGAAAACTCATAGGGTCTGCTCACCT | + |
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Preference number: 3 (lower is better) Translates to: THTSPFSQTGWG*ASEKTHRVCSP Trigger: AGGTGAGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAGGGCTAGTGTGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR GCA 72 bp | CAACATGACCACCTTCGCAGCACTTCCAAACGCATCTaGCTTCCTAATACCCCAACCCTAGGCCTACCAAAG | + |
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Preference number: 3 (lower is better) Translates to: QHDHLRSTSKRI*LPNTPTLGLPK Trigger: CTTTGGTAGGCCTAGGGTTGGGGTATTAGGAAGGCAGATGCGTTTGGAAGTGCTGCGAAGGTGGTCATGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR TCA 72 bp | TACACCAGTCTAACTGCCTTCACAATATGTCCAACATaGCCACCTTCGCAGCACTTCCAAACGCATCTGCCT | + |
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Preference number: 3 (lower is better) Translates to: YTSLTAFTICPT*PPSQHFQTHLP Trigger: AGGCAGATGCGTTTGGAAGTGCTGCGAAGGTGGTCATGTTGGACATATTGTGAAGGCAGTTAGACTGGTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| 3UTR GCA 72 bp | CTTAATATGGCAGCTTTCATAGTACACCAGTCTAACTaGCTTCACAATATGTCCAACATGACCACCTTCGCA | + |
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Preference number: 3 (lower is better) Translates to: LNMAAFIVHQSN*LHNMSNMTTFA Trigger: TGCGAAGGTGGTCATGTTGGACATATTGTGAAGGCAGTTAGACTGGTGTACTATGAAAGCTGCCATATTAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR TCA 90 bp | CTTTCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTGGCGTAGGCTGGGGCTaGGCCGGGGAGGTGACTGCA | + |
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Preference number: 4 (lower is better) Translates to: LSHRQGGDGLQRKLIGSAGVGWG*AGEVTA Trigger: TGCAGTCACCTCCCCGGCTCAGCCCCAGCCTACGCC...AGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CCA 90 bp | CTTTCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTACCAGTGCCCAAGCTTaGGAAGGTGGGCCCCAAGGG | + |
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Preference number: 4 (lower is better) Translates to: LSHRQGGDGLQRKLIGSATSAQA*EGGPQG Trigger: CCCTTGGGGCCCACCTTCCCAAGCTTGGGCACTGGT...AGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR TCA 90 bp | CTGCCTTCACAATATGTCCAACATGACCACCTTCGCAGCACTTCCAAACGCATCCCTTCTCCTCCAGCTTaGAGCGCTTCTGCCGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: LPSQYVQHDHLRSTSKRIPSPPA*SASAGG Trigger: TCCGCCGGCAGAAGCGCTTCAAGCTGGAGGAGAAGG...GATGCGTTTGGAAGTGCTGCGAAGGTGGTCATGTTGGACATATTGTGAAGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR TCA 90 bp | AATGGCCAAACACAGGCAGTATTCCCAAGCCCCAGACAAGAACTTGACCTCAGTGGTGGCAGAGGTGGCTaGCCCCGCAGTACCATTCCT | + |
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Preference number: 4 (lower is better) Translates to: NGQTQAVFPSPRQELDLSGGRGG*PRSTIP Trigger: AGGAATGGTACTGCGGGGTCAGCCACCTCTGCCACC...ACTGAGGTCAAGTTCTTGTCTGGGGCTTGGGAATACTGCCTGTGTTTGGCCATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR GCA 90 bp | CTGCCTTCACAATATGTCCAACATGACCACCTTCGCAGCACTTCCAAACGCATCAAGCACTGCCTCCGGTaGTGCCACCAGTGCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: LPSQYVQHDHLRSTSKRIKHCLR*CHQCPS Trigger: GCTTGGGCACTGGTGGCAGCACCGGAGGCAGTGCTT...GATGCGTTTGGAAGTGCTGCGAAGGTGGTCATGTTGGACATATTGTGAAGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CCA 90 bp | TCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTCACGGGCACAGGATTCACTaGAGAATACACCTCGCCCGC | + |
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Preference number: 4 (lower is better) Translates to: SHRQGGDGLQRKLIGSAHGHRIH*RIHLAR Trigger: GCGGGCGAGGTGTATTCTCCAGTGAATCCTGTGCCC...GTGAGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CCA 90 bp | ACTCCCGACACCCACACTAGCCCTTTCTCACAGACAGGGTGGGGATGGGCTTCAGTAGGGAGAGCTGAGTaGGTTCAAGGTCATGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: TPDTHTSPFSQTGWGWASVGRAE*VQGHVG Trigger: TCCTACATGACCTTGAACCCACTCAGCTCTCCCTAC...TGAAGCCCATCCCCACCCTGTCTGTGAGAAAGGGCTAGTGTGGGTGTCGGGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR GCA 90 bp | CTGCCTTCACAATATGTCCAACATGACCACCTTCGCAGCACTTCCAAACGCATCAGCCGGGGAGGTGACTaGAGTGGCAGCTGTAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LPSQYVQHDHLRSTSKRISRGGD*SGSCSG Trigger: ACCACTACAGCTGCCACTGCAGTCACCTCCCCGGCT...GATGCGTTTGGAAGTGCTGCGAAGGTGGTCATGTTGGACATATTGTGAAGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR TCA 90 bp | AATGGCCAAACACAGGCAGTATTCCCAAGCCCCAGACAAGAACTTGACCTCAGTCACTCGGCCAGGTCATaGGCCTCCATCTTCACTGAG | + |
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Preference number: 4 (lower is better) Translates to: NGQTQAVFPSPRQELDLSHSARS*ASIFTE Trigger: CTCAGTGAAGATGGAGGCTCATGACCTGGCCGAGTG...ACTGAGGTCAAGTTCTTGTCTGGGGCTTGGGAATACTGCCTGTGTTTGGCCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR TCA 90 bp | CTGCCTTCACAATATGTCCAACATGACCACCTTCGCAGCACTTCCAAACGCATCGGAGCTCCAGGCCGCTaGAATAAGGTGTGGACGAAG | + |
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Preference number: 4 (lower is better) Translates to: LPSQYVQHDHLRSTSKRIGAPGR*NKVWTK Trigger: CTTCGTCCACACCTTATTTCAGCGGCCTGGAGCTCC...GATGCGTTTGGAAGTGCTGCGAAGGTGGTCATGTTGGACATATTGTGAAGGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR TCA 90 bp | AATGGCCAAACACAGGCAGTATTCCCAAGCCCCAGACAAGAACTTGACCTCAGTGAGGGTAGGGAGAGCTaGGTGGGTTCAAGGTCATGT | + |
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Preference number: 4 (lower is better) Translates to: NGQTQAVFPSPRQELDLSEGRES*VGSRSC Trigger: ACATGACCTTGAACCCACTCAGCTCTCCCTACCCTC...ACTGAGGTCAAGTTCTTGTCTGGGGCTTGGGAATACTGCCTGTGTTTGGCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR GCA 90 bp | CTTTCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTCCGCCGGTACCCCTTTaGCATCTCTTTTCCATGTAC | + |
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Preference number: 4 (lower is better) Translates to: LSHRQGGDGLQRKLIGSAPPVPL*HLFSMY Trigger: GTACATGGAAAAGAGATGGCAAAGGGGTACCGGCGG...AGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CCA 90 bp | AATGGCCAAACACAGGCAGTATTCCCAAGCCCCAGACAAGAACTTGACCTCAGTACATGTTCCCAGAGCTaGGATGCAAGGCCCAGTAGG | + |
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Preference number: 4 (lower is better) Translates to: NGQTQAVFPSPRQELDLSTCSQS*DARPSR Trigger: CCTACTGGGCCTTGCATCCCAGCTCTGGGAACATGT...ACTGAGGTCAAGTTCTTGTCTGGGGCTTGGGAATACTGCCTGTGTTTGGCCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CCA 90 bp | AATGGCCAAACACAGGCAGTATTCCCAAGCCCCAGACAAGAACTTGACCTCAGTAGAGATGTAGGAATATaGTGGTTTGGCGTGGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: NGQTQAVFPSPRQELDLSRDVGI*WFGVGQ Trigger: CTGGCCCACGCCAAACCACCATATTCCTACATCTCT...ACTGAGGTCAAGTTCTTGTCTGGGGCTTGGGAATACTGCCTGTGTTTGGCCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR TCA 90 bp | CTGCCTTCACAATATGTCCAACATGACCACCTTCGCAGCACTTCCAAACGCATCTGTCGATGTCTGTTCTaGCATCAGGTTGTTGATAGA | + |
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Preference number: 4 (lower is better) Translates to: LPSQYVQHDHLRSTSKRICRCLF*HQVVDR Trigger: TCTATCAACAACCTGATGTCAGAACAGACATCGACA...GATGCGTTTGGAAGTGCTGCGAAGGTGGTCATGTTGGACATATTGTGAAGGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS TCA 90 bp | CGGGGAGGTGACTGCAGTGGCAGCTGTAGTGGTGGCAGAGGTGGCTaGCCCCGCAGTACCATTCCTGCTGGCCGATGTGGCGCTGTTTCC | + |
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Preference number: 5 (lower is better) Translates to: RGGDCSGSCSGGRGG*PRSTIPAGRCGAVS Trigger: GGAAACAGCGCCACATCGGCCAGCAGGAATGGTACTGCGGGGTCAGCCACCTCTGCCACCACTACAGCTGCCACTGCAGTCACCTCCCCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS CCA 90 bp | CCGGTACCCCTTTGCCATCTCTTTTCCATGTACAAGCCCGGGCCCTaGGGCTACATACCCGGAAGCACTGCCTCCGGTGCTGCCACCAGT | + |
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Preference number: 5 (lower is better) Translates to: PVPLCHLFSMYKPGP*GYIPGSTASGAATS Trigger: ACTGGTGGCAGCACCGGAGGCAGTGCTTCCGGGTATGTAGCCCCAGGGCCCGGGCTTGTACATGGAAAAGAGATGGCAAAGGGGTACCGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CAA 90 bp | TCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTCACCACCAGTGCCCAAGCTaGGGAAGGTGGGCCCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: SHRQGGDGLQRKLIGSAHHQCPS*GRWAPR Trigger: CCTTGGGGCCCACCTTCCCAAGCTTGGGCACTGGTG...GTGAGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CAA 90 bp | AGACACCATGTGATATGGTGGCCAATTTGGCATCTGCTGAACCAAGAAGTCTGCGAGCCTTTGCCTGGCTaGTCTGGGGAGCGTGCCACC | + |
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Preference number: 5 (lower is better) Translates to: RHHVIWWPIWHLLNQEVCEPLPG*SGERAT Trigger: GGTGGCACGCTCCCCAGACAAGCCAGGCAAAGGCTC...GCAGACTTCTTGGTTCAGCAGATGCCAAATTGGCCACCATATCACATGGTGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CAA 90 bp | AGACACCATGTGATATGGTGGCCAATTTGGCATCTGCTGAACCAAGAAGTCTGCGCCTTCTCCTCCAGCTaGAAGCGCTTCTGCCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: RHHVIWWPIWHLLNQEVCAFSSS*KRFCRR Trigger: CCGCCGGCAGAAGCGCTTCAAGCTGGAGGAGAAGGC...GCAGACTTCTTGGTTCAGCAGATGCCAAATTGGCCACCATATCACATGGTGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS CCA 90 bp | GGTTATGAGAGAGATGTAGGAATATGGTGGTTTGGCGTGGGCCAGTaGCCGCCGGTACCCCTTTGCCATCTCTTTTCCATGTACAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: GYERDVGIWWFGVGQ*PPVPLCHLFSMYKP Trigger: GGGCTTGTACATGGAAAAGAGATGGCAAAGGGGTACCGGCGGCCACTGGCCCACGCCAAACCACCATATTCCTACATCTCTCTCATAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CAA 90 bp | CTTTCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTAACCCCACATCCAGTTaGGAAGGTGTCGATGTCTGT | + |
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Preference number: 5 (lower is better) Translates to: LSHRQGGDGLQRKLIGSANPTSS*EGVDVC Trigger: ACAGACATCGACACCTTCCAAACTGGATGTGGGGTT...AGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS-3UTR CAA 90 bp | TTCTCACAGACAGGGTGGGGATGGGCTTCAGAGAAAACTCATAGGGTCTGCTCATCTGACATCAGGTTGTaGATAGAGAAAGGGTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: FSQTGWGWASEKTHRVCSSDIRL*IEKGWL Trigger: CAACCACCCTTTCTCTATCAACAACCTGATGTCAGA...TGAGCAGACCCTATGAGTTTTCTCTGAAGCCCATCCCCACCCTGTCTGTGAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS CCA 72 bp | AGCACTGCCTCCGGTGCTGCCACCAGTGCCCAAGCTTaGGAAGGTGGGCCCCAAGGGCGCAGTGGGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: STASGAATSAQA*EGGPQGRSGGW Trigger: CCAGCCCCCACTGCGCCCTTGGGGCCCACCTTCCCAAGCTTGGGCACTGGTGGCAGCACCGGAGGCAGTGCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS CAA 72 bp | AAGCACTGCCTCCGGTGCTGCCACCAGTGCCCAAGCTaGGGAAGGTGGGCCCCAAGGGCGCAGTGGGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: KHCLRCCHQCPS*GRWAPRAQWGL Trigger: CAGCCCCCACTGCGCCCTTGGGGCCCACCTTCCCAAGCTTGGGCACTGGTGGCAGCACCGGAGGCAGTGCTT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS TCA 72 bp | CTCTGGGCCTCGGGCTCAGATGGCGTAGGCTGGGGCTaGGCCGGGGAGGTGACTGCAGTGGCAGCTGTAGTG | + |
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Preference number: 6 (lower is better) Translates to: LWASGSDGVGWG*AGEVTAVAAVV Trigger: CACTACAGCTGCCACTGCAGTCACCTCCCCGGCTCAGCCCCAGCCTACGCCATCTGAGCCCGAGGCCCAGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS GCA 72 bp | CATACCCGGAAGCACTGCCTCCGGTGCTGCCACCAGTaGCCAAGCTTGGGAAGGTGGGCCCCAAGGGCGCAG | + |
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Preference number: 6 (lower is better) Translates to: HTRKHCLRCCHQ*PSLGRWAPRAQ Trigger: CTGCGCCCTTGGGGCCCACCTTCCCAAGCTTGGGCACTGGTGGCAGCACCGGAGGCAGTGCTTCCGGGTATG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS GCA 72 bp | GCCCTGGGGCTACATACCCGGAAGCACTGCCTCCGGTaGTGCCACCAGTGCCCAAGCTTGGGAAGGTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: ALGLHTRKHCLR*CHQCPSLGRWA Trigger: GGCCCACCTTCCCAAGCTTGGGCACTGGTGGCAGCACCGGAGGCAGTGCTTCCGGGTATGTAGCCCCAGGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS GCA 72 bp | CTGGGGCTACATACCCGGAAGCACTGCCTCCGGTGCTaGCACCAGTGCCCAAGCTTGGGAAGGTGGGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: LGLHTRKHCLRC*HQCPSLGRWAP Trigger: TGGGGCCCACCTTCCCAAGCTTGGGCACTGGTGGCAGCACCGGAGGCAGTGCTTCCGGGTATGTAGCCCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS TCA 72 bp | GACTGCAGTGGCAGCTGTAGTGGTGGCAGAGGTGGCTaGCCCCGCAGTACCATTCCTGCTGGCCGATGTGGC | + |
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Preference number: 6 (lower is better) Translates to: DCSGSCSGGRGG*PRSTIPAGRCG Trigger: GCCACATCGGCCAGCAGGAATGGTACTGCGGGGTCAGCCACCTCTGCCACCACTACAGCTGCCACTGCAGTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS GCA 72 bp | TGGTGGCAGAGGTGGCTGACCCCGCAGTACCATTCCTaGTGGCCGATGTGGCGCTGTTTCCTTTCTTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: WWQRWLTPQYHS*WPMWRCFLSLP Trigger: AGGCAAAGAAAGGAAACAGCGCCACATCGGCCAGCAGGAATGGTACTGCGGGGTCAGCCACCTCTGCCACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS CCA 72 bp | CTTTGCCATCTCTTTTCCATGTACAAGCCCGGGCCCTaGGGCTACATACCCGGAAGCACTGCCTCCGGTGCT | + |
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Preference number: 6 (lower is better) Translates to: LCHLFSMYKPGP*GYIPGSTASGA Trigger: AGCACCGGAGGCAGTGCTTCCGGGTATGTAGCCCCAGGGCCCGGGCTTGTACATGGAAAAGAGATGGCAAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS CCA 72 bp | TGGCAGAGGTGGCTGACCCCGCAGTACCATTCCTGCTaGCCGATGTGGCGCTGTTTCCTTTCTTTGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: WQRWLTPQYHSC*PMWRCFLSLPS Trigger: AGAAGGCAAAGAAAGGAAACAGCGCCACATCGGCCAGCAGGAATGGTACTGCGGGGTCAGCCACCTCTGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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| CDS CCA 72 bp | CTGAATAGCCATGGTTATGAGAGAGATGTAGGAATATaGTGGTTTGGCGTGGGCCAGTGGCCGCCGGTACCC | + |
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Preference number: 6 (lower is better) Translates to: LNSHGYERDVGI*WFGVGQWPPVP Trigger: GGGTACCGGCGGCCACTGGCCCACGCCAAACCACCATATTCCTACATCTCTCTCATAACCATGGCTATTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036018.6 |
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