Pregenerated sensors for FOXA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035451Ensembl transcript IDs: ENSMUST00000044380.8
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATACCTTCCTaGATAAAGGCAGCACTGCCTTTCAATACTCTCAAGAGCCCCTAC | + |
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Preference number: 1 (lower is better) Translates to: VKAKGSNVHNRFIPS*IKAALPFNTLKSPY Trigger: GTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTGCCTTTATGCAGGAAGGTATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR TCA 90 bp | AAAACTAACACCACGTCCAACTGTGGAAAGTGCATTAACACTGGATaGGCCAAGAATAGGATGGCAAGAACTAAAATGGCCACAATTGGG | + |
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Preference number: 1 (lower is better) Translates to: KTNTTSNCGKCINTG*AKNRMARTKMATIG Trigger: CCCAATTGTGGCCATTTTAGTTCTTGCCATCCTATTCTTGGCTCATCCAGTGTTAATGCACTTTCCACAGTTGGACGTGGTGTTAGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CCA 90 bp | TATTATGTGGTTGGTTTGGTGTGTGTGTGTCTGTGTGTGTGTGTGTaGTTTTGTTTGTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGT | + |
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Preference number: 1 (lower is better) Translates to: YYVVGLVCVCLCVCV*FCLFAVGFSLLLPG Trigger: ACCTGGTAGCAGGAGAGAAAAACCAACAGCAAACAAACAAAACCACACACACACACACAGACACACACACACCAAACCAACCACATAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CCA 90 bp | CCAACTGTGGAAAGTGCATTAACACTGGATGAGCCAAGAATAGGATaGCAAGAACTAAAATGGCCACAATTGGGATTTTGGAATTCGGGA | + |
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Preference number: 1 (lower is better) Translates to: PTVESALTLDEPRIG*QELKWPQLGFWNSG Trigger: TCCCGAATTCCAAAATCCCAATTGTGGCCATTTTAGTTCTTGCCATCCTATTCTTGGCTCATCCAGTGTTAATGCACTTTCCACAGTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR TCA 90 bp | GTCCATAGACATGTATATTCATTTCACTTAAGGACGTCCGAGATCTaGATGCATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTG | + |
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Preference number: 1 (lower is better) Translates to: VHRHVYSFHLRTSEI*MHPECKVKAKGSNV Trigger: CACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATGCATTCAGATCTCGGACGTCCTTAAGTGAAATGAATATACATGTCTATGGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CAA 90 bp | TGTGGTTGGTTTGGTGTGTGTGTGTCTGTGTGTGTGTGTGTGGTTTaGTTTGTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCC | + |
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Preference number: 2 (lower is better) Translates to: CGWFGVCVSVCVCVV*FVCCWFFSPATRLA Trigger: GGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAACAAACAAAACCACACACACACACACAGACACACACACACCAAACCAACCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR GCA 90 bp | ATGCATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTCTACCAGGTTGGCCATaGAGACAAAACCCTCAGTTC | + |
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Preference number: 2 (lower is better) Translates to: MHPECKVKAKGSNVHNRFLPGWP*RQNPQF Trigger: GAACTGAGGGTTTTGTCTGCATGGCCAACCTGGTAG...AAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CAA 90 bp | CGTAGGTGGGTAGAGAGGACAAGTGTGGAGAGGCATCCTTGTAACTaGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTAGCTATT | + |
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Preference number: 2 (lower is better) Translates to: RRWVERTSVERHPCN*ASQAIFENVYHLAI Trigger: AATAGCTAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCTCTCCACACTTGTCCTCTCTACCCACCTACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR GCA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATATTGGTTTTTCTCTCCTaGTACCAGGTTGGCCATGCA | + |
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Preference number: 2 (lower is better) Translates to: HPECKVKAKGSNVHNRFILVFLS*YQVGHA Trigger: TGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAA...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR TCA 90 bp | ATGCATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTCACTTCCATCTTTACTaGGTTAAGAGTATTGCCACA | + |
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Preference number: 2 (lower is better) Translates to: MHPECKVKAKGSNVHNRFHFHLY*VKSIAT Trigger: TGTGGCAATACTCTTAACTCAGTAAAGATGGAAGTG...AAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CCA 90 bp | ATGCATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTAACAGTCCTTTGAACTaGGGAAAATTGTGCGTGAAA | + |
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Preference number: 2 (lower is better) Translates to: MHPECKVKAKGSNVHNRFNSPLN*GKLCVK Trigger: TTTCACGCACAATTTTCCCCAGTTCAAAGGACTGTT...AAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTATGGAATTTTATTATGTaGTTGGTTTGGTGTGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: QHCLSILSRAPTVYLVSLWNFIM*LVWCVC Trigger: ACACACACACCAAACCAACCACATAATAAAATTCCA...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CAA 90 bp | GAAAATGTCTATCACCTAGCTATTACCTCTACGTGTTATGCAAAGTaGAACGAGGTCTTCATATCTGGGCATGATATTAAGTCCATAGAC | + |
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Preference number: 2 (lower is better) Translates to: ENVYHLAITSTCYAK*NEVFISGHDIKSID Trigger: GTCTATGGACTTAATATCATGCCCAGATATGAAGACCTCGTTCAACTTTGCATAACACGTAGAGGTAATAGCTAGGTGATAGACATTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR TCA 90 bp | GCAATTTTTGAAAATGTCTATCACCTAGCTATTACCTCTACGTGTTATGCAAAGATCCAGAATGTAAGGTaGAAGCAAAGGGCTCCAATG | + |
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Preference number: 2 (lower is better) Translates to: AIFENVYHLAITSTCYAKIQNVR*KQRAPM Trigger: CATTGGAGCCCTTTGCTTTCACCTTACATTCTGGAT...CTTTGCATAACACGTAGAGGTAATAGCTAGGTGATAGACATTTTCAAAAATTGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR TCA 90 bp | GCAATTTTTGAAAATGTCTATCACCTAGCTATTACCTCTACGTGTTATGCAAAGAAAGTAACAGTCCTTTaGACTGGGGAAAATTGTGCG | + |
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Preference number: 2 (lower is better) Translates to: AIFENVYHLAITSTCYAKKVTVL*TGENCA Trigger: CGCACAATTTTCCCCAGTTCAAAGGACTGTTACTTT...CTTTGCATAACACGTAGAGGTAATAGCTAGGTGATAGACATTTTCAAAAATTGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CCA 90 bp | GCAATTTTTGAAAATGTCTATCACCTAGCTATTACCTCTACGTGTTATGCAAAGATTTTATTATGTGGTTaGTTTGGTGTGTGTGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: AIFENVYHLAITSTCYAKILLCG*FGVCVS Trigger: AGACACACACACACCAAACCAACCACATAATAAAAT...CTTTGCATAACACGTAGAGGTAATAGCTAGGTGATAGACATTTTCAAAAATTGC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CCA 72 bp | AAGGCAGTTCCTGAAGAACTGGATTTCCAGCGTAGGTaGGTAGAGAGGACAAGTGTGGAGAGGCATCCTTGT | + |
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Preference number: 3 (lower is better) Translates to: KAVPEELDFQRR*VERTSVERHPC Trigger: ACAAGGATGCCTCTCCACACTTGTCCTCTCTACCCACCTACGCTGGAAATCCAGTTCTTCAGGAACTGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR GCA 72 bp | TGTGTGTCTGTGTGTGTGTGTGTGGTTTTGTTTGTTTaGTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCC | + |
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Preference number: 3 (lower is better) Translates to: CVSVCVCVVLFV*CWFFSPATRLA Trigger: GGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAACAAACAAAACCACACACACACACACAGACACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR GCA 72 bp | AAGGGCTCCAATGTGCATAACCGGTTTATACCTTCCTaGATAAAGGCAGCACTGCCTTTCAATACTCTCAAG | + |
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Preference number: 3 (lower is better) Translates to: KGSNVHNRFIPS*IKAALPFNTLK Trigger: CTTGAGAGTATTGAAAGGCAGTGCTGCCTTTATGCAGGAAGGTATAAACCGGTTATGCACATTGGAGCCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CAA 90 bp | AGGCATCCTTGTAACTTGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTAGCCCCTACTGTCTACTaGGTTTCTTTACCACTTCCA | + |
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Preference number: 3 (lower is better) Translates to: RHPCNLASQAIFENVYHLAPTVY*VSLPLP Trigger: TGGAAGTGGTAAAGAAACCAAGTAGACAGTAGGGGC...TAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CCA 72 bp | CTGGATGAGCCAAGAATAGGATGGCAAGAACTAAAATaGCCACAATTGGGATTTTGGAATTCGGGACCAAAT | + |
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Preference number: 3 (lower is better) Translates to: LDEPRIGWQELK*PQLGFWNSGPN Trigger: ATTTGGTCCCGAATTCCAAAATCCCAATTGTGGCCATTTTAGTTCTTGCCATCCTATTCTTGGCTCATCCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR TCA 72 bp | CATGTATATTCATTTCACTTAAGGACGTCCGAGATCTaGATGCATCCAGAATGTAAGGTGAAAGCAAAGGGC | + |
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Preference number: 3 (lower is better) Translates to: HVYSFHLRTSEI*MHPECKVKAKG Trigger: GCCCTTTGCTTTCACCTTACATTCTGGATGCATTCAGATCTCGGACGTCCTTAAGTGAAATGAATATACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR CCA 72 bp | GAAAGTGCATTAACACTGGATGAGCCAAGAATAGGATaGCAAGAACTAAAATGGCCACAATTGGGATTTTGG | + |
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Preference number: 3 (lower is better) Translates to: ESALTLDEPRIG*QELKWPQLGFW Trigger: CCAAAATCCCAATTGTGGCCATTTTAGTTCTTGCCATCCTATTCTTGGCTCATCCAGTGTTAATGCACTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CAA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATATGTGTGTGTGTGGTTTaGTTTGTTTGCTGTTGGTTT | + |
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Preference number: 3 (lower is better) Translates to: HPECKVKAKGSNVHNRFICVCVV*FVCCWF Trigger: AAACCAACAGCAAACAAACAAAACCACACACACACA...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CAA 90 bp | AGGCATCCTTGTAACTTGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTAACTGAGTTAAGAGTATaGCCACAGACCTGTAAACTC | + |
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Preference number: 3 (lower is better) Translates to: RHPCNLASQAIFENVYHLTELRV*PQTCKL Trigger: GAGTTTACAGGTCTGTGGCAATACTCTTAACTCAGT...TAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CAA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATTATTATGTGGTTGGTTaGGTGTGTGTGTGTCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: GMESVVFVVIHTMSVEYNYYVVG*VCVCLC Trigger: ACACAGACACACACACACCAAACCAACCACATAATA...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| 3UTR-3UTR CAA 90 bp | TTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTTGTCTAAAACTAACACCAAATTTTATTATGTGGTaGGTTTGGTGTGTGTGTGTC | + |
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Preference number: 3 (lower is better) Translates to: LRRQRGIIMKPVCLKLTPNFIMW*VWCVCV Trigger: GACACACACACACCAAACCAACCACATAATAAAATT...TGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | TGTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCCATGCAGACAAAACCGGGGTGACTCGGCGCTaGGGTTCCCCGGGCCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: CLLLVFLSCYQVGHADKTGVTRR*GSPGLR Trigger: CCTCAGGCCCGGGGAACCCCAGCGCCGAGTCACCCC...GGTTTTGTCTGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | TGTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCCATGCAGACAAAACCGGCTGCGGCCCAGGTTaGACGGCGCGTACGCCATGG | + |
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Preference number: 4 (lower is better) Translates to: CLLLVFLSCYQVGHADKTGCGPG*TARTPW Trigger: CCATGGCGTACGCGCCGTCCAACCTGGGCCGCAGCC...GGTTTTGTCTGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR TCA 90 bp | GTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCCATGCAGACAAAACCCGAGGGTAGCTGCGCTTaGATGTCTTGGCGTCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: VCCWFFSPATRLAMQTKPEGSCA*MSWRRR Trigger: GCGGCGACGCCAAGACATTCAAGCGCAGCTACCCTC...GGGTTTTGTCTGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR TCA 90 bp | ATGCATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTCCGTGCACACCCCGGTaGAGGGGTGACTCGGCGCTG | + |
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Preference number: 4 (lower is better) Translates to: MHPECKVKAKGSNVHNRFPCTPR*RGDSAL Trigger: CAGCGCCGAGTCACCCCTTCACCGGGGTGTGCACGG...AAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR GCA 90 bp | GTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCCATGCAGACAAAACCCACGCCATGGGACTCATaGACGGGTTCATGGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: VCCWFFSPATRLAMQTKPTPWDS*TGSWRR Trigger: CCGCCGCCATGAACCCGTGCATGAGTCCCATGGCGT...GGGTTTTGTCTGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTAGGGCTGAGGGCTCGATaGGGCTCCTCGTGGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: QHCLSILSRAPTVYLVSLGLRAR*GSSWPL Trigger: CAGTGGCCACGAGGAGCCCCATCGAGCCCTCAGCCC...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATAGCCTGCAGAGGCCCCTaGCATGCCAGCCACAGCACC | + |
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Preference number: 4 (lower is better) Translates to: HPECKVKAKGSNVHNRFIACRGP*HASHST Trigger: GGTGCTGTGGCTGGCATGCCAGGGGCCTCTGCAGGC...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTACGATGGGGCTCCTCGTaGCCACTGAGGCGCTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: QHCLSILSRAPTVYLVSLRWGSS*PLRRCQ Trigger: TTGGCAGCGCCTCAGTGGCCACGAGGAGCCCCATCG...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR GCA 90 bp | AGGCATCCTTGTAACTTGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTACAGAGGCCCCTGGCATaGCAGCCACAGCACCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: RHPCNLASQAIFENVYHLQRPLA*QPQHRD Trigger: GTCCCGGTGCTGTGGCTGGCATGCCAGGGGCCTCTG...TAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR GCA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATAGCTGTTCATGGCGCCTaGAGAGGCCCCTGGCATGCC | + |
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Preference number: 4 (lower is better) Translates to: HPECKVKAKGSNVHNRFIAVHGA*RGPWHA Trigger: GGCATGCCAGGGGCCTCTGCAGGCGCCATGAACAGC...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR GCA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATACGCCCGCCGCAGTCATaGTGTTCATGGCGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: HPECKVKAKGSNVHNRFIRPPQS*CSWRLQ Trigger: CTGCAGGCGCCATGAACAGCATGACTGCGGCGGGCG...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTATCATGCACGGGTTCATaGCGGCGGCGTAGGGACCCA | + |
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Preference number: 4 (lower is better) Translates to: QHCLSILSRAPTVYLVSLSCTGS*RRRRDP Trigger: TGGGTCCCTACGCCGCCGCCATGAACCCGTGCATGA...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATCGCCCCCTGTCGCCGTaGCCCCGCTGTGGTCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GMESVVFVVIHTMSVEYNRPLSP*PRCGPE Trigger: CTCTGGACCACAGCGGGGCCACGGCGACAGGGGGCG...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR GCA 90 bp | TTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTTGTCTAAAACTAACACCACGCCCATGGAGCCCATaGCTCCCGGGCTCAGCGCCG | + |
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Preference number: 4 (lower is better) Translates to: LRRQRGIIMKPVCLKLTPRPWSP*LPGSAP Trigger: CGGCGCTGAGCCCGGGAGGCATGGGCTCCATGGGCG...TGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTATTGCTGGGCGCCTGCTaGATGGCCATCGTGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: QHCLSILSRAPTVYLVSLLLGAC*MAIVMS Trigger: GCTCATCACGATGGCCATCCAGCAGGCGCCCAGCAA...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATCTGTGGTCCAGAGTCTaGGGGCTGGCGGCGGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: GMESVVFVVIHTMSVEYNLWSRV*GLAAGP Trigger: AGGGCCCGCCGCCAGCCCCCAGACTCTGGACCACAG...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR TCA 90 bp | TTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTTGTCTAAAACTAACACCACCGTACCCATGGCCGTaGCGCCCGCCGCAGTCATGC | + |
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Preference number: 4 (lower is better) Translates to: LRRQRGIIMKPVCLKLTPPYPWP*RPPQSC Trigger: GCATGACTGCGGCGGGCGTCACGGCCATGGGTACGG...TGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR GCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTAAAGCCGGGGTCATGTTaGCGCTCGTGGTCATGGTGT | + |
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Preference number: 4 (lower is better) Translates to: QHCLSILSRAPTVYLVSLKPGSC*RSWSWC Trigger: ACACCATGACCACGAGCGGCAACATGACCCCGGCTT...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | AGGCATCCTTGTAACTTGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTAGGCGCGCCCTCTAGCTaGCTAGCCTTTCCGTGCACA | + |
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Preference number: 4 (lower is better) Translates to: RHPCNLASQAIFENVYHLGAPSS*LAFPCT Trigger: TGTGCACGGAAAGGCTAGCCAGCTAGAGGGCGCGCC...TAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS-3UTR CCA 90 bp | TTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTTGTCTAAAACTAACACCAGCCGTGGCCCCGCTGTaGTCCAGAGTCTGGGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: LRRQRGIIMKPVCLKLTPAVAPL*SRVWGL Trigger: CAGCCCCCAGACTCTGGACCACAGCGGGGCCACGGC...TGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | AGGCATCCTTGTAACTTGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTACTGGCCCGGAGCTTATaGGGGGCGCAGATGAAGACG | + |
|
Preference number: 4 (lower is better) Translates to: RHPCNLASQAIFENVYHLLARSL*GAQMKT Trigger: CGTCTTCATCTGCGCCCCCCATAAGCTCCGGGCCAG...TAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR TCA 90 bp | ATGCATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTCGGAGTTCATGTTGCTaGCAGGGACAGAGGAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: MHPECKVKAKGSNVHNRFRSSCC*QGQRSR Trigger: CCTACTCCTCTGTCCCTGTCAGCAACATGAACTCCG...AAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR TCA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATATGGCGTAGGACATGTTaGAGGAAGCCGGGGTCATGT | + |
|
Preference number: 4 (lower is better) Translates to: HPECKVKAKGSNVHNRFIWRRTC*RKPGSC Trigger: ACATGACCCCGGCTTCCTTCAACATGTCCTACGCCA...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR TCA 90 bp | AGGCATCCTTGTAACTTGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTACCTTTCAGATGCAGCTaGGATTCGTGGGGTGCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: RHPCNLASQAIFENVYHLPFRCS*DSWGAR Trigger: CCTGGCACCCCACGAATCTCAGCTGCATCTGAAAGG...TAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR GCA 90 bp | ATGCATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTCTTGTCCGGGGATCGTaGCACCTTGACGAAACAATC | + |
|
Preference number: 4 (lower is better) Translates to: MHPECKVKAKGSNVHNRFLVRGS*HLDETI Trigger: GATTGTTTCGTCAAGGTGGCACGATCCCCGGACAAG...AAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTATGCCGCTCGTGGTCATaGTGTTCATGGTCATGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: QHCLSILSRAPTVYLVSLCRSWS*CSWSCR Trigger: CCTACATGACCATGAACACCATGACCACGAGCGGCA...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR TCA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATACCTGCTCGTATGCCTTaGAGTCCAGCTTGTGCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: HPECKVKAKGSNVHNRFIPARMP*SPACAV Trigger: AACAGCACAAGCTGGACTTCAAGGCATACGAGCAGG...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR GCA 90 bp | GCAATTTTTGAAAATGTCTATCACCTAGCTATTACCTCTACGTGTTATGCAAAGGGCCTGAGGGGTCCTTaGGACTTTCTGGGCCCCCTT | + |
|
Preference number: 4 (lower is better) Translates to: AIFENVYHLAITSTCYAKGLRGP*DFLGPL Trigger: AAGGGGGCCCAGAAAGTCGCAAGGACCCCTCAGGCC...CTTTGCATAACACGTAGAGGTAATAGCTAGGTGATAGACATTTTCAAAAATTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR GCA 90 bp | AGGCATCCTTGTAACTTGGCCAGTCAGGCAATTTTTGAAAATGTCTATCACCTACAGCGCCTGCTCGTATaGCTTGAAGTCCAGCTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: RHPCNLASQAIFENVYHLQRLLV*LEVQLV Trigger: CACAAGCTGGACTTCAAGGCATACGAGCAGGCGCTG...TAGGTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATCAGTCATGCTGTTCATaGCGCCTGCAGAGGCCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: GMESVVFVVIHTMSVEYNQSCCS*RLQRPL Trigger: CAGGGGCCTCTGCAGGCGCCATGAACAGCATGACTG...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATACGGCGCGTACGCCATaGGACTCATGCACGGGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: GMESVVFVVIHTMSVEYNTARTP*DSCTGS Trigger: TGAACCCGTGCATGAGTCCCATGGCGTACGCGCCGT...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | CATCCAGAATGTAAGGTGAAAGCAAAGGGCTCCAATGTGCATAACCGGTTTATATCATGTTGCCGCTCGTaGTCATGGTGTTCATGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: HPECKVKAKGSNVHNRFISCCRS*SWCSWS Trigger: TGACCATGAACACCATGACCACGAGCGGCAACATGA...TATAAACCGGTTATGCACATTGGAGCCCTTTGCTTTCACCTTACATTCTGGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | GCAATTTTTGAAAATGTCTATCACCTAGCTATTACCTCTACGTGTTATGCAAAGAGGAGTAAGGCGGCTTaGCGTGAGGGTAGCTGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: AIFENVYHLAITSTCYAKRSKAA*REGSCA Trigger: AGCGCAGCTACCCTCACGCCAAGCCGCCTTACTCCT...CTTTGCATAACACGTAGAGGTAATAGCTAGGTGATAGACATTTTCAAAAATTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | TGTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCCATGCAGACAAAACCTATTTAGCACGGGTCTaGAATACACACCTTGGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: CLLLVFLSCYQVGHADKTYLARV*NTHLGS Trigger: ACTACCAAGGTGTGTATTCCAGACCCGTGCTAAATA...GGTTTTGTCTGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR GCA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATGAGTACTGCAGCGCCTaGTCGTATGCCTTGAAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: GMESVVFVVIHTMSVEYNEYCSA*SYALKS Trigger: GGACTTCAAGGCATACGAGCAGGCGCTGCAGTACTC...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CCA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTATGGTCATGGTGTTCATaGTCATGTAGGTGTTCATGG | + |
|
Preference number: 4 (lower is better) Translates to: QHCLSILSRAPTVYLVSLWSWCS*SCRCSW Trigger: CCATGAACACCTACATGACCATGAACACCATGACCA...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| 3UTR CAA 72 bp | GTAGAGAGGACAAGTGTGGAGAGGCATCCTTGTAACTaGGCCAGTCAGGCAATTTTTGAAAATGTCTATCAC | + |
|
Preference number: 4 (lower is better) Translates to: VERTSVERHPCN*ASQAIFENVYH Trigger: GTGATAGACATTTTCAAAAATTGCCTGACTGGCCAAGTTACAAGGATGCCTCTCCACACTTGTCCTCTCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR GCA 90 bp | TTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTTGTCTAAAACTAACACCATCCAGCTTGTGCTGTTaGTCGGAGGAGGACATGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LRRQRGIIMKPVCLKLTPSSLCC*SEEDMR Trigger: CCTCATGTCCTCCTCCGAGCAACAGCACAAGCTGGA...TGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR GCA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATTTGAAGTCCAGCTTGTaGTGTTGCTCGGAGGAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: GMESVVFVVIHTMSVEYNLKSSL*CCSEED Trigger: GTCCTCCTCCGAGCAACAGCACAAGCTGGACTTCAA...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR GCA 90 bp | TTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTTGTCTAAAACTAACACCACAGTCGTTGCTCTCATaGCCTTCCATCTTCACAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LRRQRGIIMKPVCLKLTPQSLLS*PSIFTV Trigger: GACTGTGAAGATGGAAGGGCATGAGAGCAACGACTG...TGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| 3UTR CAA 72 bp | TATCACCTAGCTATTACCTCTACGTGTTATGCAAAGTaGAACGAGGTCTTCATATCTGGGCATGATATTAAG | + |
|
Preference number: 4 (lower is better) Translates to: YHLAITSTCYAK*NEVFISGHDIK Trigger: CTTAATATCATGCCCAGATATGAAGACCTCGTTCAACTTTGCATAACACGTAGAGGTAATAGCTAGGTGATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| 3UTR CAA 72 bp | ATTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTaGTCTAAAACTAACACCACGTCCAACTGTGGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: IEKAKRNNNETR*SKTNTTSNCGK Trigger: CTTTCCACAGTTGGACGTGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 90 bp | ACGGGTTCATGGCGGCGGCGTAGGGACCCAGGCCGTTCATGGAGGTaGCGGGCTGCGCGCCCATGGAGCCCATGCCTCCCGGGCTCAGCG | + |
|
Preference number: 5 (lower is better) Translates to: TGSWRRRRDPGRSWR*RAARPWSPCLPGSA Trigger: CGCTGAGCCCGGGAGGCATGGGCTCCATGGGCGCGCAGCCCGCCACCTCCATGAACGGCCTGGGTCCCTACGCCGCCGCCATGAACCCGT 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 90 bp | TCATGCACGGGTTCATGGCGGCGGCGTAGGGACCCAGGCCGTTCATaGAGGTGGCGGGCTGCGCGCCCATGGAGCCCATGCCTCCCGGGC | + |
|
Preference number: 5 (lower is better) Translates to: SCTGSWRRRRDPGRS*RWRAARPWSPCLPG Trigger: GCCCGGGAGGCATGGGCTCCATGGGCGCGCAGCCCGCCACCTCCATGAACGGCCTGGGTCCCTACGCCGCCGCCATGAACCCGTGCATGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS TCA 90 bp | CCATGGAGCCCATGCCTCCCGGGCTCAGCGCCGTACCCATGGCCGTaGCGCCCGCCGCAGTCATGCTGTTCATGGCGCCTGCAGAGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: PWSPCLPGSAPYPWP*RPPQSCCSWRLQRP Trigger: GGGCCTCTGCAGGCGCCATGAACAGCATGACTGCGGCGGGCGTCACGGCCATGGGTACGGCGCTGAGCCCGGGAGGCATGGGCTCCATGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS GCA 90 bp | CGCGGCTGCGGCCCAGGTTGGACGGCGCGTACGCCATGGGACTCATaGACGGGTTCATGGCGGCGGCGTAGGGACCCAGGCCGTTCATGG | + |
|
Preference number: 5 (lower is better) Translates to: RGCGPGWTARTPWDS*TGSWRRRRDPGRSW Trigger: CCATGAACGGCCTGGGTCCCTACGCCGCCGCCATGAACCCGTGCATGAGTCCCATGGCGTACGCGCCGTCCAACCTGGGCCGCAGCCGCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS GCA 90 bp | CCGCCGCAGTCATGCTGTTCATGGCGCCTGCAGAGGCCCCTGGCATaGCAGCCACAGCACCGGGACTCAGGCCGGCCCCTAAGCCCGTGT | + |
|
Preference number: 5 (lower is better) Translates to: PPQSCCSWRLQRPLA*QPQHRDSGRPLSPC Trigger: ACACGGGCTTAGGGGCCGGCCTGAGTCCCGGTGCTGTGGCTGGCATGCCAGGGGCCTCTGCAGGCGCCATGAACAGCATGACTGCGGCGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS GCA 90 bp | ACCCATGGCCGTGACGCCCGCCGCAGTCATGCTGTTCATGGCGCCTaGAGAGGCCCCTGGCATGCCAGCCACAGCACCGGGACTCAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: THGRDARRSHAVHGA*RGPWHASHSTGTQA Trigger: GGCCTGAGTCCCGGTGCTGTGGCTGGCATGCCAGGGGCCTCTGCAGGCGCCATGAACAGCATGACTGCGGCGGGCGTCACGGCCATGGGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 90 bp | CCAGGTTGGACGGCGCGTACGCCATGGGACTCATGCACGGGTTCATaGCGGCGGCGTAGGGACCCAGGCCGTTCATGGAGGTGGCGGGCT | + |
|
Preference number: 5 (lower is better) Translates to: PGWTARTPWDSCTGS*RRRRDPGRSWRWRA Trigger: AGCCCGCCACCTCCATGAACGGCCTGGGTCCCTACGCCGCCGCCATGAACCCGTGCATGAGTCCCATGGCGTACGCGCCGTCCAACCTGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 90 bp | AATACACACCTTGGTAGTAGGCTGGCTCCAGGGCTGAGGGCTCGATaGGGCTCCTCGTGGCCACTGAGGCGCTGCCAAGGGGCAGACTGG | + |
|
Preference number: 5 (lower is better) Translates to: NTHLGSRLAPGLRAR*GSSWPLRRCQGADW Trigger: CCAGTCTGCCCCTTGGCAGCGCCTCAGTGGCCACGAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCAGCCTACTACCAAGGTGTGTATT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS TCA 90 bp | CGGGACTCAGGCCGGCCCCTAAGCCCGTGTTGGCGTAGGACATGTTaGAGGAAGCCGGGGTCATGTTGCCGCTCGTGGTCATGGTGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: RDSGRPLSPCWRRTC*RKPGSCCRSWSWCS Trigger: TGAACACCATGACCACGAGCGGCAACATGACCCCGGCTTCCTTCAACATGTCCTACGCCAACACGGGCTTAGGGGCCGGCCTGAGTCCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CAA 90 bp | GGTATGGAGTCGGTAGTATTTGTGGTAATACACACAATGAGTGTTGAATACAATCGGCTGCGGCCCAGGTaGGACGGCGCGTACGCCATG | + |
|
Preference number: 5 (lower is better) Translates to: GMESVVFVVIHTMSVEYNRLRPR*DGAYAM Trigger: CATGGCGTACGCGCCGTCCAACCTGGGCCGCAGCCG...ATTGTATTCAACACTCATTGTGTGTATTACCACAAATACTACCGACTCCATACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CAA 90 bp | TGTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCCATGCAGACAAAACCGCCTGCTCGTATGCCTaGAAGTCCAGCTTGTGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: CLLLVFLSCYQVGHADKTACSYA*KSSLCC Trigger: ACAGCACAAGCTGGACTTCAAGGCATACGAGCAGGC...GGTTTTGTCTGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CAA 90 bp | GTTTGCTGTTGGTTTTTCTCTCCTGCTACCAGGTTGGCCATGCAGACAAAACCCTCTGGAATACACACCTaGGTAGTAGGCTGGCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: VCCWFFSPATRLAMQTKPSGIHT*VVGWLQ Trigger: CTGGAGCCAGCCTACTACCAAGGTGTGTATTCCAGA...GGGTTTTGTCTGCATGGCCAACCTGGTAGCAGGAGAGAAAAACCAACAGCAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CAA 90 bp | CAGCACTGCCTTTCAATACTCTCAAGAGCCCCTACTGTCTACTTGGTTTCTTTAGTCCAGCTTGTGCTGTaGCTCGGAGGAGGACATGAG | + |
|
Preference number: 5 (lower is better) Translates to: QHCLSILSRAPTVYLVSLVQLVL*LGGGHE Trigger: CTCATGTCCTCCTCCGAGCAACAGCACAAGCTGGAC...TAAAGAAACCAAGTAGACAGTAGGGGCTCTTGAGAGTATTGAAAGGCAGTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CAA 90 bp | GCAATTTTTGAAAATGTCTATCACCTAGCTATTACCTCTACGTGTTATGCAAAGGAAGCCGGGGTCATGTaGCCGCTCGTGGTCATGGTG | + |
|
Preference number: 5 (lower is better) Translates to: AIFENVYHLAITSTCYAKEAGVM*PLVVMV Trigger: CACCATGACCACGAGCGGCAACATGACCCCGGCTTC...CTTTGCATAACACGTAGAGGTAATAGCTAGGTGATAGACATTTTCAAAAATTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS-3UTR CAA 90 bp | TTGAGAAGGCAAAGAGGAATAATAATGAAACCCGTTTGTCTAAAACTAACACCAAGGCCGGAGTTCATGTaGCTGACAGGGACAGAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: LRRQRGIIMKPVCLKLTPRPEFM*LTGTEE Trigger: CTCCTCTGTCCCTGTCAGCAACATGAACTCCGGCCT...TGGTGTTAGTTTTAGACAAACGGGTTTCATTATTATTCCTCTTTGCCTTCTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 72 bp | TGGCGGCGGCGTAGGGACCCAGGCCGTTCATGGAGGTaGCGGGCTGCGCGCCCATGGAGCCCATGCCTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: WRRRRDPGRSWR*RAARPWSPCLP Trigger: CGGGAGGCATGGGCTCCATGGGCGCGCAGCCCGCCACCTCCATGAACGGCCTGGGTCCCTACGCCGCCGCCA 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 72 bp | CCAGGCCGTTCATGGAGGTGGCGGGCTGCGCGCCCATaGAGCCCATGCCTCCCGGGCTCAGCGCCGTACCCA | + |
|
Preference number: 6 (lower is better) Translates to: PGRSWRWRAARP*SPCLPGSAPYP Trigger: TGGGTACGGCGCTGAGCCCGGGAGGCATGGGCTCCATGGGCGCGCAGCCCGCCACCTCCATGAACGGCCTGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 72 bp | GGTTCATGGCGGCGGCGTAGGGACCCAGGCCGTTCATaGAGGTGGCGGGCTGCGCGCCCATGGAGCCCATGC | + |
|
Preference number: 6 (lower is better) Translates to: GSWRRRRDPGRS*RWRAARPWSPC Trigger: GCATGGGCTCCATGGGCGCGCAGCCCGCCACCTCCATGAACGGCCTGGGTCCCTACGCCGCCGCCATGAACC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 72 bp | CGCGGCTGCGGCCCAGGTTGGACGGCGCGTACGCCATaGGACTCATGCACGGGTTCATGGCGGCGGCGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: RGCGPGWTARTP*DSCTGSWRRRR Trigger: CCTACGCCGCCGCCATGAACCCGTGCATGAGTCCCATGGCGTACGCGCCGTCCAACCTGGGCCGCAGCCGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 72 bp | CTGGCTCCAGGGCTGAGGGCTCGATGGGGCTCCTCGTaGCCACTGAGGCGCTGCCAAGGGGCAGACTGGCGG | + |
|
Preference number: 6 (lower is better) Translates to: LAPGLRARWGSS*PLRRCQGADWR Trigger: CCGCCAGTCTGCCCCTTGGCAGCGCCTCAGTGGCCACGAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCAG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS TCA 72 bp | CCATGCCTCCCGGGCTCAGCGCCGTACCCATGGCCGTaGCGCCCGCCGCAGTCATGCTGTTCATGGCGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: PCLPGSAPYPWP*RPPQSCCSWRL Trigger: CAGGCGCCATGAACAGCATGACTGCGGCGGGCGTCACGGCCATGGGTACGGCGCTGAGCCCGGGAGGCATGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS GCA 72 bp | GGCCCAGGTTGGACGGCGCGTACGCCATGGGACTCATaGACGGGTTCATGGCGGCGGCGTAGGGACCCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: GPGWTARTPWDS*TGSWRRRRDPG Trigger: GCCTGGGTCCCTACGCCGCCGCCATGAACCCGTGCATGAGTCCCATGGCGTACGCGCCGTCCAACCTGGGCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 72 bp | ACGGCGCGTACGCCATGGGACTCATGCACGGGTTCATaGCGGCGGCGTAGGGACCCAGGCCGTTCATGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: TARTPWDSCTGS*RRRRDPGRSWR Trigger: CCTCCATGAACGGCCTGGGTCCCTACGCCGCCGCCATGAACCCGTGCATGAGTCCCATGGCGTACGCGCCGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
||
| CDS CCA 72 bp | CTTGGTAGTAGGCTGGCTCCAGGGCTGAGGGCTCGATaGGGCTCCTCGTGGCCACTGAGGCGCTGCCAAGGG | + |
|
Preference number: 6 (lower is better) Translates to: LGSRLAPGLRAR*GSSWPLRRCQG Trigger: CCCTTGGCAGCGCCTCAGTGGCCACGAGGAGCCCCATCGAGCCCTCAGCCCTGGAGCCAGCCTACTACCAAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS TCA 72 bp | GGCCGGCCCCTAAGCCCGTGTTGGCGTAGGACATGTTaGAGGAAGCCGGGGTCATGTTGCCGCTCGTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: GRPLSPCWRRTC*RKPGSCCRSWS Trigger: TGACCACGAGCGGCAACATGACCCCGGCTTCCTTCAACATGTCCTACGCCAACACGGGCTTAGGGGCCGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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| CDS GCA 72 bp | TGCAGCGCCTGCTCGTATGCCTTGAAGTCCAGCTTGTaGTGTTGCTCGGAGGAGGACATGAGGTTGTTGATG | + |
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Preference number: 6 (lower is better) Translates to: CSACSYALKSSL*CCSEEDMRLLM Trigger: CATCAACAACCTCATGTCCTCCTCCGAGCAACAGCACAAGCTGGACTTCAAGGCATACGAGCAGGCGCTGCA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044380.8 |
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