Pregenerated sensors for FOLR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001827Ensembl transcript IDs: ENSMUST00000106981.8, ENSMUST00000106982.8, ENSMUST00000106983.8, ENSMUST00000106985.8, ENSMUST00000106986.9, ENSMUST00000123321.8, ENSMUST00000123630.8, ENSMUST00000126204.8, ENSMUST00000134145.8, ENSMUST00000140068.8, ENSMUST00000150184.2, ENSMUST00000151706.8, ENSMUST00000155311.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GGGAGCTGGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAACTCTGGTCCACCTGCTaGATCCAGGGTCCCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: GSWEAEPSRVALQTTEGKLWSTC*IQGPKF Trigger: GAACTTGGGACCCTGGATCCAGCAGGTGGACCAGAG...TTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCCAGCTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | GGAGCTGGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAAAGTGGCCAGGTCCCATaGAACCCAGCTCCACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: GAGRLSQAGWRSRQLKVKSGQVP*NPAPLM Trigger: CATGAGTGGAGCTGGGTTTCATGGGACCTGGCCACT...TTTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCCAGCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | GGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAACAGGAGCTCTGGTCCACCTGCTaGATCCAGGGTCCCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: GRLSQAGWRSRQLKVKQELWSTC*IQGPKF Trigger: GAACTTGGGACCCTGGATCCAGCAGGTGGACCAGAG...CTCCTGTTTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | GGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAACAGGAGTCTTTGCGCCAGCTCTaGTCCACCTGCTGGATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GRLSQAGWRSRQLKVKQESLRQL*STCWIQ Trigger: CTGGATCCAGCAGGTGGACCAGAGCTGGCGCAAAGA...CTCCTGTTTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | GGGAGCTGGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAACGCAGTGGTTCCAGTTaGACCGGTACAGGTAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: GSWEAEPSRVALQTTEGKRSGSS*TGTGRK Trigger: TTTCCTACCTGTACCGGTTCAACTGGAACCACTGCG...TTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCCAGCTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGCTCTTTGCGCCAGCTCTaGTCCACCTGCTGGATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: LLKRLSEPHHKGGWELGGSLRQL*STCWIQ Trigger: CTGGATCCAGCAGGTGGACCAGAGCTGGCGCAAAGA...GCCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | GGAGCTGGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAACGCAGTGGTTCCAGTTaGACCGGTACAGGTAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: GAGRLSQAGWRSRQLKVKRSGSS*TGTGRK Trigger: TTTCCTACCTGTACCGGTTCAACTGGAACCACTGCG...TTTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCCAGCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | GGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAACAGGAGCGCAGTGGTTCCAGTTaGACCGGTACAGGTAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: GRLSQAGWRSRQLKVKQERSGSS*TGTGRK Trigger: TTTCCTACCTGTACCGGTTCAACTGGAACCACTGCG...CTCCTGTTTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
||
| CDS-3UTR TCA 90 bp | TGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGTGGCCAGGTCCCATaGAACCCAGCTCCACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: WFIKEAVRAPPQRRLGAGSGQVP*NPAPLM Trigger: CATGAGTGGAGCTGGGTTTCATGGGACCTGGCCACT...CCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | GGGAGCTGGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAACCTGGCTTGTGTTCGTaGAACAGCAGGAATTCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: GSWEAEPSRVALQTTEGKPGLCS*NSRNSS Trigger: AGACGAATTCCTGCTGTTCCACGAACACAAGCCAGG...TTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCCAGCTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | TTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGCCGCAGTGGTTCCAGTTaGACCGGTACAGGTAGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LLKRLSEPHHKGGWELGGRSGSS*TGTGRK Trigger: TTTCCTACCTGTACCGGTTCAACTGGAACCACTGCG...GCCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | TCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGAGTGGCCAGGTCCCATaGAACCCAGCTCCACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: SGLLKRLSEPHHKGGWELSGQVP*NPAPLM Trigger: CATGAGTGGAGCTGGGTTTCATGGGACCTGGCCACT...CAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGCTCTGGTCCACCTGCTaGATCCAGGGTCCCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SGLLKRLSEPHHKGGWELLWSTC*IQGPKF Trigger: GAACTTGGGACCCTGGATCCAGCAGGTGGACCAGAG...CAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | ATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGTGGGGAAGTAGAAGGTaGAGGGATGGCAGGAGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: MSGLLKRLSEPHHKGGWEWGSRR*RDGRRL Trigger: GAGCCTCCTGCCATCCCTTCACCTTCTACTTCCCCA...CTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR TCA 90 bp | ATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGAGTGGCCAGGTCCCATaGAACCCAGCTCCACTCATG | + |
|
Preference number: 4 (lower is better) Translates to: MSGLLKRLSEPHHKGGWESGQVP*NPAPLM Trigger: CATGAGTGGAGCTGGGTTTCATGGGACCTGGCCACT...CTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | ATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGTCTTTGCGCCAGCTCTaGTCCACCTGCTGGATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: MSGLLKRLSEPHHKGGWESLRQL*STCWIQ Trigger: CTGGATCCAGCAGGTGGACCAGAGCTGGCGCAAAGA...CTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
||
| CDS-3UTR GCA 90 bp | GGAGCTGGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAAGGAAATGTCCTTATGTaGTTCCTGGCTTGTGTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: GAGRLSQAGWRSRQLKVKGNVLM*FLACVR Trigger: ACGAACACAAGCCAGGAAGCACATAAGGACATTTCC...TTTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCCAGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGCCCCGGTTTTTCTTTGTaGTGTTTGGCATCCATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LLKRLSEPHHKGGWELGGPGFSL*CLASMQ Trigger: CTGCATGGATGCCAAACACCACAAAGAAAAACCGGG...GCCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | AATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGACTCTGGTCCACCTGCTaGATCCAGGGTCCCAAGTTC | + |
|
Preference number: 4 (lower is better) Translates to: NVWFIKEAVRAPPQRRLGLWSTC*IQGPKF Trigger: GAACTTGGGACCCTGGATCCAGCAGGTGGACCAGAG...TCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | AATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGATCTTTGCGCCAGCTCTaGTCCACCTGCTGGATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: NVWFIKEAVRAPPQRRLGSLRQL*STCWIQ Trigger: CTGGATCCAGCAGGTGGACCAGAGCTGGCGCAAAGA...TCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR GCA 90 bp | TTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGCGGAAATGTCCTTATGTaGTTCCTGGCTTGTGTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: LLKRLSEPHHKGGWELGGGNVLM*FLACVR Trigger: ACGAACACAAGCCAGGAAGCACATAAGGACATTTCC...GCCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGCCCGGTTTTTCTTTGTaGTGTTTGGCATCCATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: WFIKEAVRAPPQRRLGAGPGFSL*CLASMQ Trigger: CTGCATGGATGCCAAACACCACAAAGAAAAACCGGG...CCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGCCCGGTTTTTCTTTGTaGTGTTTGGCATCCATGCAG | + |
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Preference number: 4 (lower is better) Translates to: FIKEAVRAPPQRRLGAGRPGFSL*CLASMQ Trigger: CTGCATGGATGCCAAACACCACAAAGAAAAACCGGG...CCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGTCCTTATGTGCTTCCTaGCTTGTGTTCGTGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: WFIKEAVRAPPQRRLGAGSLCAS*LVFVEQ Trigger: CTGTTCCACGAACACAAGCCAGGAAGCACATAAGGA...CCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGTCCTTATGTGCTTCCTaGCTTGTGTTCGTGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: FIKEAVRAPPQRRLGAGRSLCAS*LVFVEQ Trigger: CTGTTCCACGAACACAAGCCAGGAAGCACATAAGGA...CCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | ATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCCTGGCTTGTGTTCGTaGAACAGCAGGAATTCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: MSGLLKRLSEPHHKGGWEPGLCS*NSRNSS Trigger: AGACGAATTCCTGCTGTTCCACGAACACAAGCCAGG...CTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CCA 90 bp | TCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGTCCTTATGTGCTTCCTaGCTTGTGTTCGTGGAACAG | + |
|
Preference number: 4 (lower is better) Translates to: SGLLKRLSEPHHKGGWELSLCAS*LVFVEQ Trigger: CTGTTCCACGAACACAAGCCAGGAAGCACATAAGGA...CAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR GCA 90 bp | TCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAAATGTCCTTATGTaGTTCCTGGCTTGTGTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: SGLLKRLSEPHHKGGWELGNVLM*FLACVR Trigger: ACGAACACAAGCCAGGAAGCACATAAGGACATTTCC...CAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR GCA 90 bp | ATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGGGAAATGTCCTTATGTaGTTCCTGGCTTGTGTTCGT | + |
|
Preference number: 4 (lower is better) Translates to: MSGLLKRLSEPHHKGGWEGNVLM*FLACVR Trigger: ACGAACACAAGCCAGGAAGCACATAAGGACATTTCC...CTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CAA 90 bp | GGGAGCTGGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAGGGCCCGGTTTTTCTTaGTGGTGTTTGGCATCCATG | + |
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Preference number: 5 (lower is better) Translates to: GSWEAEPSRVALQTTEGKGPGFS*WCLASM Trigger: CATGGATGCCAAACACCACAAAGAAAAACCGGGCCC...TTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCCAGCTCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CAA 90 bp | GGGAGGCTGAGCCAAGCAGGGTGGCGCTCCAGACAACTGAAGGTAAAACAGGAGTATGTGCTTCCTGGCTaGTGTTCGTGGAACAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: GRLSQAGWRSRQLKVKQEYVLPG*CSWNSR Trigger: CCTGCTGTTCCACGAACACAAGCCAGGAAGCACATA...CTCCTGTTTTACCTTCAGTTGTCTGGAGCGCCACCCTGCTTGGCTCAGCCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CAA 90 bp | TTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGCGGGCCCGGTTTTTCTTaGTGGTGTTTGGCATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: LLKRLSEPHHKGGWELGGGPGFS*WCLASM Trigger: CATGGATGCCAAACACCACAAAGAAAAACCGGGCCC...GCCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CAA 90 bp | TTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGCTATGTGCTTCCTGGCTaGTGTTCGTGGAACAGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: LLKRLSEPHHKGGWELGGYVLPG*CSWNSR Trigger: CCTGCTGTTCCACGAACACAAGCCAGGAAGCACATA...GCCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CAA 90 bp | TGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGGGGCCCGGTTTTTCTTaGTGGTGTTTGGCATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: WFIKEAVRAPPQRRLGAGGPGFS*WCLASM Trigger: CATGGATGCCAAACACCACAAAGAAAAACCGGGCCC...CCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCA 54% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CAA 90 bp | TTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGAGGGGGCCCGGTTTTTCTTaGTGGTGTTTGGCATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: FIKEAVRAPPQRRLGAGRGPGFS*WCLASM Trigger: CATGGATGCCAAACACCACAAAGAAAAACCGGGCCC...CCTCCCAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS-3UTR CAA 90 bp | TCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGAGCTGGGGCCCGGTTTTTCTTaGTGGTGTTTGGCATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: SGLLKRLSEPHHKGGWELGPGFS*WCLASM Trigger: CATGGATGCCAAACACCACAAAGAAAAACCGGGCCC...CAGCTCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS CCA 90 bp | GGTACAGGTAGGAAATGTCCTTATGTGCTTCCTGGCTTGTGTTCGTaGAACAGCAGGAATTCGTCTTCCAGGGGCTGCACTGGTCGTGTA | + |
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Preference number: 5 (lower is better) Translates to: GTGRKCPYVLPGLCS*NSRNSSSRGCTGRV Trigger: TACACGACCAGTGCAGCCCCTGGAAGACGAATTCCTGCTGTTCCACGAACACAAGCCAGGAAGCACATAAGGACATTTCCTACCTGTACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 ENSMUST00000126204.8 ENSMUST00000134145.8 ENSMUST00000140068.8 ENSMUST00000151706.8 |
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| CDS-3UTR CAA 90 bp | AATGTCTGGTTTATTAAAGAGGCTGTCAGAGCCCCACCACAAAGGAGGCTGGGATATGTGCTTCCTGGCTaGTGTTCGTGGAACAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: NVWFIKEAVRAPPQRRLGYVLPG*CSWNSR Trigger: CCTGCTGTTCCACGAACACAAGCCAGGAAGCACATA...TCCCAGCCTCCTTTGTGGTGGGGCTCTGACAGCCTCTTTAATAAACCAGACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS GCA 72 bp | AAGGGATGGCAGGAGGCTCCCACAGGACACTCGTTATaGCCCGAGGACCAGTTCCATCCCTTGTGCCAATTG | + |
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Preference number: 6 (lower is better) Translates to: KGWQEAPTGHSL*PEDQFHPLCQL Trigger: CAATTGGCACAAGGGATGGAACTGGTCCTCGGGGCATAACGAGTGTCCTGTGGGAGCCTCCTGCCATCCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 |
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| CDS TCA 72 bp | TTGAGAAGTTCAGTCCTGGCCCGAGTAGCTCTGGACTaGGCACATTCGGCCATCCACATCACCAGGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: LRSSVLARVALD*AHSAIHITRSN Trigger: GTTGCTCCTGGTGATGTGGATGGCCGAATGTGCTCAGTCCAGAGCTACTCGGGCCAGGACTGAACTTCTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 13 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 ENSMUST00000123321.8 ENSMUST00000123630.8 ENSMUST00000126204.8 ENSMUST00000134145.8 ENSMUST00000140068.8 ENSMUST00000150184.2 ENSMUST00000151706.8 ENSMUST00000155311.2 |
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| CDS GCA 72 bp | TGTTCGTGGAACAGCAGGAATTCGTCTTCCAGGGGCTaGACTGGTCGTGTAAATTGTCCTCAGGGCCCGGTT | + |
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Preference number: 6 (lower is better) Translates to: CSWNSRNSSSRG*TGRVNCPQGPV Trigger: AACCGGGCCCTGAGGACAATTTACACGACCAGTGCAGCCCCTGGAAGACGAATTCCTGCTGTTCCACGAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 9 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 ENSMUST00000126204.8 ENSMUST00000134145.8 ENSMUST00000140068.8 ENSMUST00000151706.8 |
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| CDS CAA 90 bp | GAACAGCAGGAATTCGTCTTCCAGGGGCTGCACTGGTCGTGTAAATaGTCCTCAGGGCCCGGTTTTTCTTTGTGGTGTTTGGCATCCATG | + |
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Preference number: 6 (lower is better) Translates to: EQQEFVFQGLHWSCK*SSGPGFSLWCLASM Trigger: CATGGATGCCAAACACCACAAAGAAAAACCGGGCCCTGAGGACAATTTACACGACCAGTGCAGCCCCTGGAAGACGAATTCCTGCTGTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 9 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 ENSMUST00000126204.8 ENSMUST00000134145.8 ENSMUST00000140068.8 ENSMUST00000151706.8 |
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| CDS CAA 72 bp | GGTACAGGTAGGAAATGTCCTTATGTGCTTCCTGGCTaGTGTTCGTGGAACAGCAGGAATTCGTCTTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: GTGRKCPYVLPG*CSWNSRNSSSR Trigger: CCTGGAAGACGAATTCCTGCTGTTCCACGAACACAAGCCAGGAAGCACATAAGGACATTTCCTACCTGTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 9 transcripts: ENSMUST00000106981.8 ENSMUST00000106982.8 ENSMUST00000106983.8 ENSMUST00000106985.8 ENSMUST00000106986.9 ENSMUST00000126204.8 ENSMUST00000134145.8 ENSMUST00000140068.8 ENSMUST00000151706.8 |
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