RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FOCAD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038368

Ensembl transcript IDs: ENSMUST00000097992.10, ENSMUST00000107147.2, ENSMUST00000159342.8

Found 503 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATaGCCTCCAATGGTGAGGATCACTTTTCATAGATCTCAGATAGCA +
Preference number: 1 (lower is better)
Translates to: LATHTVRCQYVAIFS*PPMVRITFHRSQIA
Trigger: TGCTATCTGAGATCTATGAAAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATaGACCCTTCTCCTGGCCACGCACACAGTGAGATGTCAGTATGTA +
Preference number: 1 (lower is better)
Translates to: KSCSISVLNAQVPKE*TLLLATHTVRCQYV
Trigger: TACATACTGACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTGTCTGTCTCCTCCCATaGAGAATGTTGCTGGGTCCT +
Preference number: 2 (lower is better)
Translates to: AQVPKECTLLLATHTVRCVCLLP*RMLLGP
Trigger: AGGACCCAGCAACATTCTCCATGGGAGGAGACAGAC...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR-3UTR CCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGAAGCTTCTGTTTCTCTaGTCTGTCTCCTCCCATGGA +
Preference number: 2 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMKLLFL*SVSSHG
Trigger: TCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTT...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR-3UTR TCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGCATGACCTCCAATGGTaGGGATCACTTTTCATAGAT +
Preference number: 2 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEHDLQW*GSLFID
Trigger: ATCTATGAAAAGTGATCCTCACCATTGGAGGTCATG...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR-3UTR CCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTAAGCTTCTGTTTCTCTaGTCTGTCTCCTCCCATGGA +
Preference number: 2 (lower is better)
Translates to: KSCSISVLNAQVPKECTLKLLFL*SVSSHG
Trigger: TCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR GCA 72 bp TCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATaGACCCTTCTCCTGGCCACGCACACAGTGAGATGT +
Preference number: 3 (lower is better)
Translates to: SISVLNAQVPKE*TLLLATHTVRC
Trigger: ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR CCA 72 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTaGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTC +
Preference number: 3 (lower is better)
Translates to: ISDSSPKKLLFL*SVSSHGECCWV
Trigger: GACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR GCA 72 bp GTCCATATAGAAGTCATGTTCTATTTCAGTTTTAAATaGCCAGGTACCCAAGGAATGCACCCTTCTCCTGGC +
Preference number: 3 (lower is better)
Translates to: VHIEVMFYFSFK*PGTQGMHPSPG
Trigger: GCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTCTATATGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
3UTR TCA 72 bp CACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATaGCCTCCAATGGTGAGGATCACTTTTCATAGATCT +
Preference number: 3 (lower is better)
Translates to: HTVRCQYVAIFS*PPMVRITFHRS
Trigger: AGATCTATGAAAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTGGGGGCCTCATGGTCTaGCCATGCCACCACTGCAGC +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCGGLMV*PCHHCS
Trigger: GCTGCAGTGGTGGCATGGGCAGACCATGAGGCCCCC...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGGGGGCCTCATGGTCTaGCCATGCCACCACTGCAGC +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMGGLMV*PCHHCS
Trigger: GCTGCAGTGGTGGCATGGGCAGACCATGAGGCCCCC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTACCCGGGACTCCGTGTaGCTGCTGTGGCTCATGAGG +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCTRDSV*LLWLMR
Trigger: CCTCATGAGCCACAGCAGCCACACGGAGTCCCGGGT...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTGGCTGCTGTGGCTCATaGGGGACAGGGCAAGTCCAA +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCGCCGS*GTGQVQ
Trigger: TTGGACTTGCCCTGTCCCTCATGAGCCACAGCAGCC...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCCTTCCTTGCCGTGCTaGAGCTGCAGCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCPSLPC*SCSSSS
Trigger: AGAGCTGGAGCTGCAGCTGCAGCACGGCAAGGAAGG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCCTGCCAAGCAAGGCTaGTGCTGGCCCACCAGGGCC +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSPAKQG*CWPTRA
Trigger: GGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGCAGG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCAGACCGTGGATCAGTaGCGGCATCACCCACAAGCC +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCQTVDQ*RHHPQA
Trigger: GGCTTGTGGGTGATGCCGCCACTGATCCACGGTCTG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGCAGATGCACAGCAGCTaGAGGGTCAGCTGGGTAAGC +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMQMHSS*RVSWVS
Trigger: GCTTACCCAGCTGACCCTTCAGCTGCTGTGCATCTG...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGACGCCATCGGAGTCTaGGCAAAGGCTGGCTTCATG +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMDAIGV*AKAGFM
Trigger: CATGAAGCCAGCCTTTGCTCAGACTCCGATGGCGTC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGCTGAGAGCTAACTGCTaGCTGGAGGGGCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMLRANC*LEGPSS
Trigger: TGAGGAAGGCCCCTCCAGGCAGCAGTTAGCTCTCAG...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCCCACTGGAGCTCCTTaGCCACAGAGAGGGAGGGCG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSPTGAP*PQRGRA
Trigger: CGCCCTCCCTCTCTGTGGGCAAGGAGCTCCAGTGGG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAGTGCCACCAGGCCATaGAGGGCAGCCAGACAGAGC +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSSATRP*RAARQS
Trigger: GCTCTGTCTGGCTGCCCTTCATGGCCTGGTGGCACT...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCAAAGGCTGGCTTCATaGTTGGACACCACAACGGCC +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCQRLAS*LDTTTA
Trigger: GGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGTCTCCTTCTCGGGGTaGTGCATAGCAGCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMVSFSG*CIAAVS
Trigger: ACTCACTGCTGCTATGCAGCACCCCGAGAAGGAGAC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCTCATGGTCTGCCCATaGCACCACTGCAGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCLMVCP*HHCSCK
Trigger: TTTGCAGCTGCAGTGGTGGCATGGGCAGACCATGAG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTAGCTTCGCCCTCTACTaGCCATCAGCCGATTCAGTG +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCSFALY*PSADSV
Trigger: CACTGAATCGGCTGATGGCCAGTAGAGGGCGAAGCT...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGACTGGGCAGTTTCATaGCCTGGCTCAGACCCTGTA +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMDWAVS*PGSDPV
Trigger: TACAGGGTCTGAGCCAGGCCATGAAACTGCCCAGTC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGCCAGGGCCATTCTGCTaGTGCCATGGCAACCAACTG +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEPGPFC*CHGNQL
Trigger: CAGTTGGTTGCCATGGCACCAGCAGAATGGCCCTGG...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGGCACTTCCACAAGACTaGGAGCTAACTGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEALPQD*ELTAAW
Trigger: CCAGGCAGCAGTTAGCTCTCAGTCTTGTGGAAGTGC...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGAATCCTCCAGGCTGTaGAGATGGAGCCATACATGC +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMESSRL*RWSHTC
Trigger: GCATGTATGGCTCCATCTTCACAGCCTGGAGGATTC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGCCTGGCAGAGTGCATaGAGACCTTGTAACACCAAG +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMAWQSA*RPCNTK
Trigger: CTTGGTGTTACAAGGTCTTCATGCACTCTGCCAGGC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCTGTGTTGGCATGGTTaGCGATGCGTGCCTGGTATA +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCLCWHG*RCVPGI
Trigger: TATACCAGGCACGCATCGTCAACCATGCCAACACAG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGCATAGCAAAACAGCATaGCACCTGCCAGGCCAGGTT +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMHSKTA*HLPGQV
Trigger: AACCTGGCCTGGCAGGTGGCATGCTGTTTTGCTATG...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGGCCTTCCTTGCCGTaGTGCAGCTGCAGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNGPSLP*CSCSSS
Trigger: GCTGGAGCTGCAGCTGCAGCACGGCAAGGAAGGCCC...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTGCAAGCCAGGCCTGTaGAAGAAAGATTGCACGGTG +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCCKPGL*KKDCTV
Trigger: CACCGTGCAATCTTTCTTCCACAGGCCTGGCTTGCA...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGGCTGGCTTCATGCTTaGACACCACAACGGCCAGGC +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSGWLHA*TPQRPG
Trigger: GCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAAGCAAGGCTGCTGCTaGCCCACCAGGGCCATTCTG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSKQGCC*PTRAIL
Trigger: CAGAATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTT...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGCAGACACCTCTGGGCTaGAGTAAGACTTTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEQTPLG*SKTLSS
Trigger: GCTGCTCAAAGTCTTACTTCAGCCCAGAGGTGTCTG...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCGTCAGACACGGCCATaGAACGCTGCAGTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSRQTRP*NAAVQG
Trigger: ACCCTGAACTGCAGCGTTTCATGGCCGTGTCTGACG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGACGCCATCGGAGTCTaGGCAAAGGCTGGCTTCATG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSDAIGV*AKAGFM
Trigger: CATGAAGCCAGCCTTTGCTCAGACTCCGATGGCGTC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTGTTCTGGATGGCTTCTaGCTTCAGCTGCATGACATC +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCVLDGF*LQLHDI
Trigger: GATGTCATGCAGCTGAAGTCAGAAGCCATCCAGAAC...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTCCACAAGCCCAGCAGTaGGGCCGCGCTCTGCGACGA +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAPQAQQ*GRALRR
Trigger: TCGTCGCAGAGCGCGGCCTCACTGCTGGGCTTGTGG...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACCACAAGCCCAGCAGTaGGGCCGCGCTCTGCGACGA +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEPQAQQ*GRALRR
Trigger: TCGTCGCAGAGCGCGGCCTCACTGCTGGGCTTGTGG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTCTGGGAAACCTGATTaGCACCTTCGTCCGTCATCT +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCSGKPD*HLRPSS
Trigger: AGATGACGGACGAAGGTGTCAATCAGGTTTCCCAGA...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTGCCCATGCCACCACTaGAGCTGCAAATATCAGCAT +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCCPCHH*SCKYQH
Trigger: ATGCTGATATTTGCAGCTGCAGTGGTGGCATGGGCA...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCCACCAGGGCCATTCTaGTGGTGCCATGGCAACCAA +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSPPGPF*WCHGNQ
Trigger: TTGGTTGCCATGGCACCAGCAGAATGGCCCTGGTGG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTCAGCCAGACAGAGCATaGTGGGGGCACCCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTQPDRA*WGHPLS
Trigger: TGACAGAGGGTGCCCCCACCATGCTCTGTCTGGCTG...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTTGACGATGCGTGCCTaGTATAAGCTGTGCAGGATC +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCLTMRA*YKLCRI
Trigger: GATCCTGCACAGCTTATACCAGGCACGCATCGTCAA...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGATTCTGCTGGTGCCATaGCAACCAACTGGCACTAAG +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMILLVP*QPTGTK
Trigger: CTTAGTGCCAGTTGGTTGCCATGGCACCAGCAGAAT...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCATTCATTCAACACCTaGGAAATGGCTGCGAGCATG +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCHSFNT*EMAASM
Trigger: CATGCTCGCAGCCATTTCTCAGGTGTTGAATGAATG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGCGGCTGGAGTAGCTTaGTCAGGCTTGGTGCATTCA +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSAAGVA*SGLVHS
Trigger: TGAATGCACCAAGCCTGATCAAGCTACTCCAGCCGC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGCCTTTCAATGCAGAGTaGTATATCCCACGGGGCATA +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMPFNAE*YIPRGI
Trigger: TATGCCCCGTGGGATATATCACTCTGCATTGAAAGG...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCTGTCAGCATGTCTCTaGCCCAGAGCCAGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATLSACL*PRARLC
Trigger: GCACAGCCTGGCTCTGGGTCAGAGACATGCTGACAG...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTGCAGCTGTCTTGGTaGTCTCATCTGTCAGCATGT +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMLQLSW*SHLSAC
Trigger: ACATGCTGACAGATGAGATCACCAAGACAGCTGCAA...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTAGTGCCACCAGGCCATaGAGGGCAGCCAGACAGAGC +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGSATRP*RAARQS
Trigger: GCTCTGTCTGGCTGCCCTTCATGGCCTGGTGGCACT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGCTGACTTCAGCTGCATaGCATCCACATCAGAGCCTA +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSELTSAA*HPHQSL
Trigger: TAGGCTCTGATGTGGATGTCATGCAGCTGAAGTCAG...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGAACATAGCTGAACTCTaGATGACCCTGGGCGACAAG +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSENIAEL*MTLGDK
Trigger: CTTGTCGCCCAGGGTCATGCAGAGTTCAGCTATGTT...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGCAGCAATCAGGCCTGTaGTCAAGCACGGTGATCAAA +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEQQSGL*SSTVIK
Trigger: TTTGATCACCGTGCTTGAGCACAGGCCTGATTGCTG...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTAGACTGAGAGCTAACTaGTGCCTGGAGGGGCCTTCC +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTRLRAN*CLEGPS
Trigger: GGAAGGCCCCTCCAGGCAGCAGTTAGCTCTCAGTCT...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTGGAGCCATACATGCTaGTTACAGGAAAAGCAAGCC +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCWSHTC*LQEKQA
Trigger: GGCTTGCTTTTCCTGTAAGCAGCATGTATGGCTCCA...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS-3UTR GCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACCCACTGGAGCTCCTTaGCCACAGAGAGGGAGGGCG +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEPTGAP*PQRGRA
Trigger: CGCCCTCCCTCTCTGTGGGCAAGGAGCTCCAGTGGG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGCACGCCTCCTTTCAATaGAGAGTGATATATCCCACG +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMHASFQ*RVIYPT
Trigger: CGTGGGATATATCACTCTGCATTGAAAGGAGGCGTG...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCCTCCTGAAATGTCCTaGTCTGGCTCCCGCTCTCAT +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSPPEMS*SGSRSH
Trigger: ATGAGAGCGGGAGCCAGAGCAGGACATTTCAGGAGG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGTGCCCATGCCACCACTaGAGCTGCAAATATCAGCAT +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSECPCHH*SCKYQH
Trigger: ATGCTGATATTTGCAGCTGCAGTGGTGGCATGGGCA...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTGGGCCATTCTGCTGGTaGCATGGCAACCAACTGGCA +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTGPFCW*HGNQLA
Trigger: TGCCAGTTGGTTGCCATGGCACCAGCAGAATGGCCC...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGCCAAGCAAGGCTGCTaGTGGCCCACCAGGGCCATT +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGAKQGC*WPTRAI
Trigger: AATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGC...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTAGAGAGCATTCCAAGTaGAGCGGATACAGACAACCT +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCREHSK*SGYRQP
Trigger: AGGTTGTCTGTATCCGCTCCACTTGGAATGCTCTCT...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATCAGCCAGACAGAGCATaGTGGGGGCACCCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNQPDRA*WGHPLS
Trigger: TGACAGAGGGTGCCCCCACCATGCTCTGTCTGGCTG...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATCAGACCGTGGATCAGTaGCGGCATCACCCACAAGCC +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNQTVDQ*RHHPQA
Trigger: GGCTTGTGGGTGATGCCGCCACTGATCCACGGTCTG...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTGCCCACAGAGGCATaGATACCAGGAGGTATTTCT +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMLPTEA*IPGGIS
Trigger: AGAAATACCTCCTGGTATCCATGCCTCTGTGGGCAA...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTCCAGGGCCATTCTGCTaGTGCCATGGCAACCAACTG +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTPGPFC*CHGNQL
Trigger: CAGTTGGTTGCCATGGCACCAGCAGAATGGCCCTGG...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAAGCAAGGCTGCTGCTaGCCCACCAGGGCCATTCTG +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSKQGCC*PTRAIL
Trigger: CAGAATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGAACGGGAGTCGTCCTTaGGAGACTAAATACAACTTG +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMNGSRP*ETKYNL
Trigger: CAAGTTGTATTTAGTCTCTCAAGGACGACTCCCGTT...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTATGCTCCTGGGGAGCTaGGTGAGAACCTCTTGCACA +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTMLLGS*VRTSCT
Trigger: TGTGCAAGAGGTTCTCACTCAGCTCCCCAGGAGCAT...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAGACTGAGAGCTAACTaGTGCCTGGAGGGGCCTTCC +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSRLRAN*CLEGPS
Trigger: GGAAGGCCCCTCCAGGCAGCAGTTAGCTCTCAGTCT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCCCAGAGCCAGGCTGTaGTTCGTTTGTATTGCACCT +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSPRARL*FVCIAP
Trigger: AGGTGCAATACAAACGAAGCACAGCCTGGCTCTGGG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTGCCACCACTGCAGCTaGAAATATCAGCATCAAGAA +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCCHHCS*KYQHQE
Trigger: TTCTTGATGCTGATATTTGCAGCTGCAGTGGTGGCA...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGGCCATTCTGCTGGTaGCATGGCAACCAACTGGCA +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNGPFCW*HGNQLA
Trigger: TGCCAGTTGGTTGCCATGGCACCAGCAGAATGGCCC...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGGGGCCATTCTGCTGGTaGCATGGCAACCAACTGGCA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATGPFCW*HGNQLA
Trigger: TGCCAGTTGGTTGCCATGGCACCAGCAGAATGGCCC...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCCCACCAGGGCCATTCTaGTGGTGCCATGGCAACCAA +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSPPGPF*WCHGNQ
Trigger: TTGGTTGCCATGGCACCAGCAGAATGGCCCTGGTGG...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCTGCCAAGCAAGGCTaGTGCTGGCCCACCAGGGCC +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPPAKQG*CWPTRA
Trigger: GGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGCAGG...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGGCCTTCCTCACCCATaGCCAGACAGTCTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGGLPHP*PDSLPG
Trigger: CCCTGGAAGACTGTCTGGCCATGGGTGAGGAAGGCC...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGAGAGAGCATTCCAAGTaGAGCGGATACAGACAACCT +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEREHSK*SGYRQP
Trigger: AGGTTGTCTGTATCCGCTCCACTTGGAATGCTCTCT...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAGGCACATCTCAGGATaGCACGGTTGGGAAGCTGTT +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSRHISG*HGWEAV
Trigger: AACAGCTTCCCAACCGTGCCATCCTGAGATGTGCCT...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTGGCAGTTTCATGGCCTaGCTCAGACCCTGTAAGGCA +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTGSFMA*LRPCKA
Trigger: TGCCTTACAGGGTCTGAGCCAGGCCATGAAACTGCC...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCCAGGGCCATTCTGCTaGTGCCATGGCAACCAACTG +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATPGPFC*CHGNQL
Trigger: CAGTTGGTTGCCATGGCACCAGCAGAATGGCCCTGG...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGACCACCCATACGCTCTaGTCCATACAGCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSETTHTL*SIQLSS
Trigger: AGAAGAAAGCTGTATGGACCAGAGCGTATGGGTGGT...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTCAACAGGCGCAACGTaGCAGCTCTTAGTCGTGGAG +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSSTGAT*QLLVVE
Trigger: CTCCACGACTAAGAGCTGTCACGTTGCGCCTGTTGA...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGTCTCCAGCACTGAAGTaGGACAGAGACTTATATGCA +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSESPALK*DRDLYA
Trigger: TGCATATAAGTCTCTGTCTCACTTCAGTGCTGGAGA...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCCAGTGTTGTCTGCTTaGAGCTTCGCCCTCTACTGG +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATPVLSA*SFALYW
Trigger: CCAGTAGAGGGCGAAGCTTCAAGCAGACAACACTGG...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACTGTCAGCATGTCTCTaGCCCAGAGCCAGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGELSACL*PRARLC
Trigger: GCACAGCCTGGCTCTGGGTCAGAGACATGCTGACAG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGCCAGCACTGAATGCTaGTGTACACACACAGCTAAG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSASTEC*CTHTAK
Trigger: CTTAGCTGTGTGTGTACATCAGCATTCAGTGCTGGC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATATGCTCCTGGGGAGCTaGGTGAGAACCTCTTGCACA +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNMLLGS*VRTSCT
Trigger: TGTGCAAGAGGTTCTCACTCAGCTCCCCAGGAGCAT...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTCTGAGAGCTAACTGCTaGCTGGAGGGGCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGLRANC*LEGPSS
Trigger: TGAGGAAGGCCCCTCCAGGCAGCAGTTAGCTCTCAG...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTGGGCCTTCCTTGCCGTaGTGCAGCTGCAGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPGPSLP*CSCSSS
Trigger: GCTGGAGCTGCAGCTGCAGCACGGCAAGGAAGGCCC...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTATCTCAAGGCACAGTTaGTGTATCTCTTCACCAAAG +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCISRHS*CISSPK
Trigger: CTTTGGTGAAGAGATACAGCAACTGTGCCTTGAGAT...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGCCTGGTATAAGCTGTaGAGGATCATCCACGCTAGA +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSAWYKL*RIIHAR
Trigger: TCTAGCGTGGATGATCCTGCACAGCTTATACCAGGC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCTGCCCATGCCACCACTaGAGCTGCAAATATCAGCAT +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSCPCHH*SCKYQH
Trigger: ATGCTGATATTTGCAGCTGCAGTGGTGGCATGGGCA...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTGGGGGCCTCATGGTCTaGCCATGCCACCACTGCAGC +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPGGLMV*PCHHCS
Trigger: GCTGCAGTGGTGGCATGGGCAGACCATGAGGCCCCC...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGCCAAGCAAGGCTGCTaGTGGCCCACCAGGGCCATT +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHAKQGC*WPTRAI
Trigger: AATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGC...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGCCAAGCAAGGCTGCTaGTGGCCCACCAGGGCCATT +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENAKQGC*WPTRAI
Trigger: AATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGC...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTTGCACAGTGACTCTATaGATGGGACTCCTGCCAAGC +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTCTVTL*MGLLPS
Trigger: GCTTGGCAGGAGTCCCATGCATAGAGTCACTGTGCA...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCTCAACACCTGAGAAATaGCTGCGAGCATGTCTGCAC +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSSTPEK*LRACLH
Trigger: GTGCAGACATGCTCGCAGCCATTTCTCAGGTGTTGA...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCTGTCACAGCTCAGCTTaGGAGAGAGAGCATTCCAAG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSCHSSA*EREHSK
Trigger: CTTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACA...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATAGCTTCGCCCTCTACTaGCCATCAGCCGATTCAGTG +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNSFALY*PSADSV
Trigger: CACTGAATCGGCTGATGGCCAGTAGAGGGCGAAGCT...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAGTCTGAGCAAAGGCTaGCTTCATGCTTGGACACCA +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSSLSKG*LHAWTP
Trigger: TGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAGACT...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATACCCGGGACTCCGTGTaGCTGCTGTGGCTCATGAGG +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENTRDSV*LLWLMR
Trigger: CCTCATGAGCCACAGCAGCCACACGGAGTCCCGGGT...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCGGCAGTTTCATGGCCTaGCTCAGACCCTGTAAGGCA +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSGSFMA*LRPCKA
Trigger: TGCCTTACAGGGTCTGAGCCAGGCCATGAAACTGCC...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCTCAGGGATAGCAGGGTaGCTTTCAAAAGGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSSGIAG*LSKGPW
Trigger: CCAAGGACCTTTTGAAAGCCACCCTGCTATCCCTGA...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCAGACACCTCTGGGCTaGAGTAAGACTTTGAGCAGC +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATQTPLG*SKTLSS
Trigger: GCTGCTCAAAGTCTTACTTCAGCCCAGAGGTGTCTG...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGCAGTTATCTTTAAGCTaGCTTCACAGATGCACAGCA +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEQLSLS*LHRCTA
Trigger: TGCTGTGCATCTGTGAAGTCAGCTTAAAGATAACTG...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGTTTACATATATCTCTaGTGGACGCAGCTTTTGCAA +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMVYIYL*WTQLLQ
Trigger: TTGCAAAAGCTGCGTCCATCAGAGATATATGTAAAC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGCTGCTGTGGCTCATaGGGGACAGGGCAAGTCCAA +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHGCCGS*GTGQVQ
Trigger: TTGGACTTGCCCTGTCCCTCATGAGCCACAGCAGCC...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCCAACCACATGGTCACTaGAGCACTTCTCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSQPHGH*STSPTA
Trigger: TGCTGTGGGAGAAGTGCTGCAGTGACCATGTGGTTG...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTAGCACAGCTGAAGGGTaGTCTGCTCCCGTACTGACA +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGSTAEG*SAPVLT
Trigger: TGTCAGTACGGGAGCAGAGCACCCTTCAGCTGTGCT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGACGGCCATGAAACGCTaGAGTTCAGGGTACACACGA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATTAMKR*SSGYTR
Trigger: TCGTGTGTACCCTGAACTGCAGCGTTTCATGGCCGT...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAAACAGCATGCCACCTaGCAGGCCAGGTTTCAATCC +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSKQHAT*QARFQS
Trigger: GGATTGAAACCTGGCCTGGCAGGTGGCATGCTGTTT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTTTGCCGTGCTGCAGCTaGAGCTCCAGCTCTGCTATC +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVALPCCS*SSSSAI
Trigger: GATAGCAGAGCTGGAGCTGCAGCTGCAGCACGGCAA...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATCCTTCCTTGCCGTGCTaGAGCTGCAGCTCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENPSLPC*SCSSSS
Trigger: AGAGCTGGAGCTGCAGCTGCAGCACGGCAAGGAAGG...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGCTTCTGACTTCAGCTaGATGACATCCACATCAGAG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSASDFS*MTSTSE
Trigger: CTCTGATGTGGATGTCATGCAGCTGAAGTCAGAAGC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACCACCAGGGCCATTCTaGTGGTGCCATGGCAACCAA +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEPPGPF*WCHGNQ
Trigger: TTGGTTGCCATGGCACCAGCAGAATGGCCCTGGTGG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCTCTTAGTCGTGGAGTaGTCCCAAGCAGCTGAATTA +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSLLVVE*SQAAEL
Trigger: TAATTCAGCTGCTTGGGACCACTCCACGACTAAGAG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATATCAGTTTCTCCCACTaGAGCTCCTTGCCCACAGAG +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNISFSH*SSLPTE
Trigger: CTCTGTGGGCAAGGAGCTCCAGTGGGAGAAACTGAT...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTGTTGTATTCAAGACTaGGGTCAAAACAGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCCCIQD*GQNSSF
Trigger: AAAGCTGCTGTTTTGACCCCAGTCTTGAATACAACA...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGACTGGGCAGTTTCATaGCCTGGCTCAGACCCTGTA +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGDWAVS*PGSDPV
Trigger: TACAGGGTCTGAGCCAGGCCATGAAACTGCCCAGTC...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTAAGCAAGGCTGCTGCTaGCCCACCAGGGCCATTCTG +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFKQGCC*PTRAIL
Trigger: CAGAATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTT...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCACCACCCATACGCTCTaGTCCATACAGCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSTTHTL*SIQLSS
Trigger: AGAAGAAAGCTGTATGGACCAGAGCGTATGGGTGGT...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATCAGATGCACAGCAGCTaGAGGGTCAGCTGGGTAAGC +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENQMHSS*RVSWVS
Trigger: GCTTACCCAGCTGACCCTTCAGCTGCTGTGCATCTG...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGCACTTCCACAAGACTaGGAGCTAACTGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAALPQD*ELTAAW
Trigger: CCAGGCAGCAGTTAGCTCTCAGTCTTGTGGAAGTGC...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAAGCGGCTGGAGTAGCTTaGTCAGGCTTGGTGCATTCA +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEAAGVA*SGLVHS
Trigger: TGAATGCACCAAGCCTGATCAAGCTACTCCAGCCGC...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGCCAGCACTGAATGCTaGTGTACACACACAGCTAAG +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNASTEC*CTHTAK
Trigger: CTTAGCTGTGTGTGTACATCAGCATTCAGTGCTGGC...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCCTGACTTCAGCTGCATaGCATCCACATCAGAGCCTA +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSLTSAA*HPHQSL
Trigger: TAGGCTCTGATGTGGATGTCATGCAGCTGAAGTCAG...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTCAGGAGCAGCAGGGATaGCTTCGGGATTTTCTGACC +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAQEQQG*LRDFLT
Trigger: GGTCAGAAAATCCCGAAGGCATCCCTGCTGCTCCTG...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTCAGGAAAAGCAAGCCTaGAGGAGATCGTGTGGCTGT +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGQEKQA*RRSCGC
Trigger: ACAGCCACACGATCTCCTGCAGGCTTGCTTTTCCTG...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCTTGATCAGGCTTGGTaGATTCATTCAACACCTGAG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSLDQAW*IHSTPE
Trigger: CTCAGGTGTTGAATGAATGCACCAAGCCTGATCAAG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTCACGCCTCCTTTCAATaGAGAGTGATATATCCCACG +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTHASFQ*RVIYPT
Trigger: CGTGGGATATATCACTCTGCATTGAAAGGAGGCGTG...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAGAGCCAGTGTTGTCTaGTTGAAGCTTCGCCCTCTA +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSRASVV*LKLRPL
Trigger: TAGAGGGCGAAGCTTCAAGCAGACAACACTGGCTCT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTATCAGAGCCTACCAGTaGCACCAGGCCATGAAGGGC +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFIRAYQ*HQAMKG
Trigger: GCCCTTCATGGCCTGGTGGCACTGGTAGGCTCTGAT...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGGAAGAAACCAATGGCTaGTCTAATAAAACTGCCTTC +
Preference number: 4 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSEEETNG*SNKTAF
Trigger: GAAGGCAGTTTTATTAGAGCAGCCATTGGTTTCTTC...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTTCCTTCTCGGGGTGCTaGATAGCAGCAGTGAGTAGA +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGSFSGC*IAAVSR
Trigger: TCTACTCACTGCTGCTATGCAGCACCCCGAGAAGGA...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGGCCTGGTATAAGCTGTaGAGGATCATCCACGCTAGA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATAWYKL*RIIHAR
Trigger: TCTAGCGTGGATGATCCTGCACAGCTTATACCAGGC...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCTGCCACCACTGCAGCTaGAAATATCAGCATCAAGAA +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSCHHCS*KYQHQE
Trigger: TTCTTGATGCTGATATTTGCAGCTGCAGTGGTGGCA...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTCTCATGGTCTGCCCATaGCACCACTGCAGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVALMVCP*HHCSCK
Trigger: TTTGCAGCTGCAGTGGTGGCATGGGCAGACCATGAG...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCAGCCGTCTGGTTTGTaGATTGGTGTATCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSQPSGL*IGVSFL
Trigger: CAGAAAAGATACACCAATCCACAAACCAGACGGCTG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCTTCCTCACCCATaGCCAGACAGTCTTCCAGGG +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPGLPHP*PDSLPG
Trigger: CCCTGGAAGACTGTCTGGCCATGGGTGAGGAAGGCC...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGGTCTTCAATATGAGTaGTCTCATGTCACAGCTCAG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSGLQYE*SHVTAQ
Trigger: CTGAGCTGTGACATGAGACCACTCATATTGAAGACC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTAGCACGCGCCAGGAATaGAAAGGTCCACAGATTCCT +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGSTRQE*KGPQIP
Trigger: AGGAATCTGTGGACCTTTCCATTCCTGGCGCGTGCT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCTTTGCTCTGATACATaGCAAGATCATAGCAAAACA +
Preference number: 4 (lower is better)
Translates to: AQVPKECTLLLATHTVRCLCSDT*QDHSKT
Trigger: TGTTTTGCTATGATCTTGCCATGTATCAGAGCAAAG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTGGCTGGCTTCATGCTTaGACACCACAACGGCCAGGC +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPGWLHA*TPQRPG
Trigger: GCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCC...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCCGTGTGGCTGCTGTaGCTCATGAGGGACAGGGCA +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPSVWLL*LMRDRA
Trigger: TGCCCTGTCCCTCATGAGCCACAGCAGCCACACGGA...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTTCCGTGTGGCTGCTGTaGCTCATGAGGGACAGGGCA +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPSVWLL*LMRDRA
Trigger: TGCCCTGTCCCTCATGAGCCACAGCAGCCACACGGA...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATTTGACGATGCGTGCCTaGTATAAGCTGTGCAGGATC +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNLTMRA*YKLCRI
Trigger: GATCCTGCACAGCTTATACCAGGCACGCATCGTCAA...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGTCAGCTGGGTAAGCTaGCTTTTCCAGAAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAVSWVS*LFQKPG
Trigger: TCCTGGCTTCTGGAAAAGTCAGCTTACCCAGCTGAC...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTCGTCAGACACGGCCATaGAACGCTGCAGTTCAGGGT +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPRQTRP*NAAVQG
Trigger: ACCCTGAACTGCAGCGTTTCATGGCCGTGTCTGACG...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTTGGATTTGCACGGCCTaGGATTCATCAGCACTTGGT +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGWICTA*DSSALG
Trigger: ACCAAGTGCTGATGAATCTCAGGCCGTGCAAATCCA...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCTCATTAAGTCTTGCTTaGAAGTGGGTGTTCTGGATG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSSLSLA*KWVFWM
Trigger: CATCCAGAACACCCACTTTCAAGCAAGACTTAATGA...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGCCTTCTCTCAGTGCTTaGATCTGTAATAATTTCATA +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMPSLSA*ICNNFI
Trigger: TATGAAATTATTACAGATGCAAGCACTGAGAGAAGG...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATTTCCAGAAGCCAGGATaGCGCAGAAGGCTTAGATAT +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNFQKPG*RRRLRY
Trigger: ATATCTAAGCCTTCTGCGGCATCCTGGCTTCTGGAA...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTTTGCCGTGCTGCAGCTaGAGCTCCAGCTCTGCTATC +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPLPCCS*SSSSAI
Trigger: GATAGCAGAGCTGGAGCTGCAGCTGCAGCACGGCAA...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTCCCAGAGCCAGGCTGTaGTTCGTTTGTATTGCACCT +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAPRARL*FVCIAP
Trigger: AGGTGCAATACAAACGAAGCACAGCCTGGCTCTGGG...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTCCTCCTGAAATGTCCTaGTCTGGCTCCCGCTCTCAT +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFPPEMS*SGSRSH
Trigger: ATGAGAGCGGGAGCCAGAGCAGGACATTTCAGGAGG...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTATCAGAGCCTACCAGTaGCACCAGGCCATGAAGGGC +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPIRAYQ*HQAMKG
Trigger: GCCCTTCATGGCCTGGTGGCACTGGTAGGCTCTGAT...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCATCTCAAGGCACAGTTaGTGTATCTCTTCACCAAAG +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSISRHS*CISSPK
Trigger: CTTTGGTGAAGAGATACAGCAACTGTGCCTTGAGAT...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATCCTTCTCGGGGTGCTaGATAGCAGCAGTGAGTAGA +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGESFSGC*IAAVSR
Trigger: TCTACTCACTGCTGCTATGCAGCACCCCGAGAAGGA...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTCTCCTTCTCGGGGTaGTGCATAGCAGCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENVSFSG*CIAAVS
Trigger: ACTCACTGCTGCTATGCAGCACCCCGAGAAGGAGAC...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATCTCATGGTCTGCCCATaGCACCACTGCAGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENLMVCP*HHCSCK
Trigger: TTTGCAGCTGCAGTGGTGGCATGGGCAGACCATGAG...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTTGCACAGTGACTCTATaGATGGGACTCCTGCCAAGC +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVACTVTL*MGLLPS
Trigger: GCTTGGCAGGAGTCCCATGCATAGAGTCACTGTGCA...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCGTCCTTGGACTTTGCTaGAAAGGCTTTGTTAGGAAT +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSVLGLC*KGFVRN
Trigger: ATTCCTAACAAAGCCTTTGCAGCAAAGTCCAAGGAC...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTAAGGTCCTTGGACTTTaGTGCAAAGGCTTTGTTAGG +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTKVLGL*CKGFVR
Trigger: CCTAACAAAGCCTTTGCAGCAAAGTCCAAGGACCTT...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATCTCTTAGTCGTGGAGTaGTCCCAAGCAGCTGAATTA +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNLLVVE*SQAAEL
Trigger: TAATTCAGCTGCTTGGGACCACTCCACGACTAAGAG...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTAGTGGGTGTTCTGGATaGCTTCTGACTTCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGSGCSG*LLTSAA
Trigger: TGCAGCTGAAGTCAGAAGCCATCCAGAACACCCACT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAAAGGCACATCTCAGGATaGCACGGTTGGGAAGCTGTT +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGERHISG*HGWEAV
Trigger: AACAGCTTCCCAACCGTGCCATCCTGAGATGTGCCT...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTATTCTGCTGGTGCCATaGCAACCAACTGGCACTAAG +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGILLVP*QPTGTK
Trigger: CTTAGTGCCAGTTGGTTGCCATGGCACCAGCAGAAT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTTTGAACATCAAAACTaGAATCAGATTTGGTACCGT +
Preference number: 4 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMFEHQN*NQIWYR
Trigger: ACGGTACCAAATCTGATTCCAGTTTTGATGTTCAAA...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTATGCTACAGCACAGCTaGAGGGTGCTCTGCTCCCGT +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLMLQHS*RVLCSR
Trigger: ACGGGAGCAGAGCACCCTTCAGCTGTGCTGTAGCAT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTGTCAGCTGGGTAAGCTaGCTTTTCCAGAAGCCAGGA +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFVSWVS*LFQKPG
Trigger: TCCTGGCTTCTGGAAAAGTCAGCTTACCCAGCTGAC...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATCTGCGCTCTAAAAGGTaGATTAAAGATGAGCACTCC +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNLRSKR*IKDEHS
Trigger: GGAGTGCTCATCTTTAATTCACCTTTTAGAGCGCAG...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGAATAGTGGCTTCTGTTaGCTTGCTGGCATCTGTAGA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATNSGFC*LAGICR
Trigger: TCTACAGATGCCAGCAAGTCAACAGAAGCCACTATT...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATTCTCCAGCACTGAAGTaGGACAGAGACTTATATGCA +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNSPALK*DRDLYA
Trigger: TGCATATAAGTCTCTGTCTCACTTCAGTGCTGGAGA...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGATCTTTTCTGGCAGGTaGAGAATGGTGTGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATIFSGR*RMVCSP
Trigger: TGGAGAACACACCATTCTTCACCTGCCAGAAAAGAT...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTCCAGTGTTGTCTGCTTaGAGCTTCGCCCTCTACTGG +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPPVLSA*SFALYW
Trigger: CCAGTAGAGGGCGAAGCTTCAAGCAGACAACACTGG...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATTATGATAAAAGCAGGTaGAGAGTTGTCCACTGGGGT +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNYDKSR*RVVHWG
Trigger: ACCCCAGTGGACAACTCTTCACCTGCTTTTATCATA...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTACGACGGTGCCTGAGTaGCAGCAATCTCAAGGCACA +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPTTVPE*QQSQGT
Trigger: TGTGCCTTGAGATTGCTGTCACTCAGGCACCGTCGT...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTATGCTCCTGGGGAGCTaGGTGAGAACCTCTTGCACA +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPMLLGS*VRTSCT
Trigger: TGTGCAAGAGGTTCTCACTCAGCTCCCCAGGAGCAT...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGCAAGCATGGAAGCATaGTACAGCACAGCTGAAGGG +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENASMEA*YSTAEG
Trigger: CCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGC...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTAGATGGAGCCATACATaGTGCTTACAGGAAAAGCAA +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTRWSHT*CLQEKQ
Trigger: TTGCTTTTCCTGTAAGCAGCATGTATGGCTCCATCT...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS-3UTR GCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGAGAAAGATTGCACGGTaGCATTCTGAAAGCTGGACA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATRKIAR*HSESWT
Trigger: TGTCCAGCTTTCAGAATGGCACCGTGCAATCTTTCT...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTCACCGGACTCTCTTTTaGAGCTGTCTTGGTGATCTC +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAHRTLF*SCLGDL
Trigger: GAGATCACCAAGACAGCTGCAAAAGAGAGTCCGGTG...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTAATATCTTCAGCCTCTaGAGCTTCAATAATGCCAGC +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTNIFSL*SFNNAS
Trigger: GCTGGCATTATTGAAGCTGCAGAGGCTGAAGATATT...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGTCTCCTTCTCGGGGTaGTGCATAGCAGCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPVSFSG*CIAAVS
Trigger: ACTCACTGCTGCTATGCAGCACCCCGAGAAGGAGAC...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATTGCCACCACTGCAGCTaGAAATATCAGCATCAAGAA +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNCHHCS*KYQHQE
Trigger: TTCTTGATGCTGATATTTGCAGCTGCAGTGGTGGCA...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATTGCACAGTGACTCTATaGATGGGACTCCTGCCAAGC +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHCTVTL*MGLLPS
Trigger: GCTTGGCAGGAGTCCCATGCATAGAGTCACTGTGCA...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGAAGGTCCTTGGACTTTaGTGCAAAGGCTTTGTTAGG +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATKVLGL*CKGFVR
Trigger: CCTAACAAAGCCTTTGCAGCAAAGTCCAAGGACCTT...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCCAGCCGTCTGGTTTGTaGATTGGTGTATCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSQPSGL*IGVSFL
Trigger: CAGAAAAGATACACCAATCCACAAACCAGACGGCTG...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAGTCTTCCAGGGCAGTaGAAGATAGTATCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSSLPGQ*KIVSAE
Trigger: TTCTGCAGATACTATCTTCCACTGCCCTGGAAGACT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATATCAGTTTCTCCCACTaGAGCTCCTTGCCCACAGAG +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHISFSH*SSLPTE
Trigger: CTCTGTGGGCAAGGAGCTCCAGTGGGAGAAACTGAT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTTGTCACAGCTCAGCTTaGGAGAGAGAGCATTCCAAG +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVACHSSA*EREHSK
Trigger: CTTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACA...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTCAGCACTTGCTACAGTaGGATTCTTGTTTTGAGTGT +
Preference number: 4 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTQHLLQ*DSCFEC
Trigger: ACACTCAAAACAAGAATCCCACTGTAGCAAGTGCTG...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTAGCACGCGCCAGGAATaGAAAGGTCCACAGATTCCT +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFSTRQE*KGPQIP
Trigger: AGGAATCTGTGGACCTTTCCATTCCTGGCGCGTGCT...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACATCAGCCGATTCAGTaGCTTGCCATCTTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEHQPIQ*LAIFAL
Trigger: CAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGTCCTTCCCTGTAAAATaGCATGGTAAGCTCGAGTCA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATSFPVK*HGKLES
Trigger: TGACTCGAGCTTACCATGCCATTTTACAGGGAAGGA...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGTTTCCCAGGTAACCTaGCAGTCAGCATGTTCAGGA +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAVSQVT*QSACSG
Trigger: TCCTGAACATGCTGACTGCCAGGTTACCTGGGAAAC...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTAGTGGGTGTTCTGGATaGCTTCTGACTTCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVASGCSG*LLTSAA
Trigger: TGCAGCTGAAGTCAGAAGCCATCCAGAACACCCACT...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTTTGACGATGCGTGCCTaGTATAAGCTGTGCAGGATC +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVALTMRA*YKLCRI
Trigger: GATCCTGCACAGCTTATACCAGGCACGCATCGTCAA...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTCAGTCAATGAACTTCTaGGTCTGTTCCTTCCATGGC +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGQSMNF*VCSFHG
Trigger: GCCATGGAAGGAACAGACCCAGAAGTTCATTGACTG...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTTCAGGGATAGCAGGGTaGCTTTCAAAAGGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVASGIAG*LSKGPW
Trigger: CCAAGGACCTTTTGAAAGCCACCCTGCTATCCCTGA...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTACCACCCATACGCTCTaGTCCATACAGCTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGTTHTL*SIQLSS
Trigger: AGAAGAAAGCTGTATGGACCAGAGCGTATGGGTGGT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTTCAACAGGCGCAACGTaGCAGCTCTTAGTCGTGGAG +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLSTGAT*QLLVVE
Trigger: CTCCACGACTAAGAGCTGTCACGTTGCGCCTGTTGA...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTGTTCTGGATGGCTTCTaGCTTCAGCTGCATGACATC +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFVLDGF*LQLHDI
Trigger: GATGTCATGCAGCTGAAGTCAGAAGCCATCCAGAAC...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATACGGAAGTTCTGCTTTaGTTTGAAGACAAGGTAGAC +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNTEVLL*FEDKVD
Trigger: GTCTACCTTGTCTTCAAATCAAAGCAGAACTTCCGT...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTACGACGGTGCCTGAGTaGCAGCAATCTCAAGGCACA +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLTTVPE*QQSQGT
Trigger: TGTGCCTTGAGATTGCTGTCACTCAGGCACCGTCGT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTCAACCACATGGTCACTaGAGCACTTCTCCCACAGCA +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPQPHGH*STSPTA
Trigger: TGCTGTGGGAGAAGTGCTGCAGTGACCATGTGGTTG...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATAACATAGCTGAACTCTaGATGACCCTGGGCGACAAG +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENNIAEL*MTLGDK
Trigger: CTTGTCGCCCAGGGTCATGCAGAGTTCAGCTATGTT...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATCAGCAATCAGGCCTGTaGTCAAGCACGGTGATCAAA +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHQQSGL*SSTVIK
Trigger: TTTGATCACCGTGCTTGAGCACAGGCCTGATTGCTG...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTAGCACAGCTGAAGGGTaGTCTGCTCCCGTACTGACA +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLSTAEG*SAPVLT
Trigger: TGTCAGTACGGGAGCAGAGCACCCTTCAGCTGTGCT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTGCAAGCATGGAAGCATaGTACAGCACAGCTGAAGGG +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPASMEA*YSTAEG
Trigger: CCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGC...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCAGGAGCAGCAGGGATaGCTTCGGGATTTTCTGACC +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLQEQQG*LRDFLT
Trigger: GGTCAGAAAATCCCGAAGGCATCCCTGCTGCTCCTG...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTACGGCCATGAAACGCTaGAGTTCAGGGTACACACGA +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPTAMKR*SSGYTR
Trigger: TCGTGTGTACCCTGAACTGCAGCGTTTCATGGCCGT...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTAGACAGAGACTTATATaGAGCACTTGCTACAGTGGG +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGRQRLI*STCYSG
Trigger: CCCACTGTAGCAAGTGCTGCATATAAGTCTCTGTCT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTAAACAGCATGCCACCTaGCAGGCCAGGTTTCAATCC +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPKQHAT*QARFQS
Trigger: GGATTGAAACCTGGCCTGGCAGGTGGCATGCTGTTT...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCATAGCAAAACAGCATaGCACCTGCCAGGCCAGGTT +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPHSKTA*HLPGQV
Trigger: AACCTGGCCTGGCAGGTGGCATGCTGTTTTGCTATG...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCAAAGGCTGGCTTCATaGTTGGACACCACAACGGCC +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLQRLAS*LDTTTA
Trigger: GGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTG...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGCCTGGTATAAGCTGTaGAGGATCATCCACGCTAGA +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHAWYKL*RIIHAR
Trigger: TCTAGCGTGGATGATCCTGCACAGCTTATACCAGGC...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAATGGCGCCATTATTTaGACACATGAAGCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSNGAII*THEASD
Trigger: GTCAGAAGCTTCATGTGTCCAAATAATGGCGCCATT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTAGTCTTCCAGGGCAGTaGAAGATAGTATCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGSLPGQ*KIVSAE
Trigger: TTCTGCAGATACTATCTTCCACTGCCCTGGAAGACT...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTTCAACACCTGAGAAATaGCTGCGAGCATGTCTGCAC +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFSTPEK*LRACLH
Trigger: GTGCAGACATGCTCGCAGCCATTTCTCAGGTGTTGA...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCTTTGCTCTGATACATaGCAAGATCATAGCAAAACA +
Preference number: 4 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSLCSDT*QDHSKT
Trigger: TGTTTTGCTATGATCTTGCCATGTATCAGAGCAAAG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTGCAAGCCAGGCCTGTaGAAGAAAGATTGCACGGTG +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPCKPGL*KKDCTV
Trigger: CACCGTGCAATCTTTCTTCCACAGGCCTGGCTTGCA...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTAGTCTGAGCAAAGGCTaGCTTCATGCTTGGACACCA +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFSLSKG*LHAWTP
Trigger: TGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAGACT...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTGTTTCCCAGGTAACCTaGCAGTCAGCATGTTCAGGA +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFVSQVT*QSACSG
Trigger: TCCTGAACATGCTGACTGCCAGGTTACCTGGGAAAC...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTATTCTGCTGGTGCCATaGCAACCAACTGGCACTAAG +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFILLVP*QPTGTK
Trigger: CTTAGTGCCAGTTGGTTGCCATGGCACCAGCAGAAT...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTCAGTTATCTTTAAGCTaGCTTCACAGATGCACAGCA +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGQLSLS*LHRCTA
Trigger: TGCTGTGCATCTGTGAAGTCAGCTTAAAGATAACTG...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTCTGCGCTCTAAAAGGTaGATTAAAGATGAGCACTCC +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVALRSKR*IKDEHS
Trigger: GGAGTGCTCATCTTTAATTCACCTTTTAGAGCGCAG...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAAAATAGTGGCTTCTGTTaGCTTGCTGGCATCTGTAGA +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGENSGFC*LAGICR
Trigger: TCTACAGATGCCAGCAAGTCAACAGAAGCCACTATT...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAGGGTCTTCCCAATTTaGACATCAAAACTGGAATCA +
Preference number: 4 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSRVFPI*TSKLES
Trigger: TGATTCCAGTTTTGATGTTCAAATTGGGAAGACCCT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATCATTCATTCAACACCTaGGAAATGGCTGCGAGCATG +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHHSFNT*EMAASM
Trigger: CATGCTCGCAGCCATTTCTCAGGTGTTGAATGAATG...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTTTGCAGCTGTCTTGGTaGTCTCATCTGTCAGCATGT +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFLQLSW*SHLSAC
Trigger: ACATGCTGACAGATGAGATCACCAAGACAGCTGCAA...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTTGGATTTGCACGGCCTaGGATTCATCAGCACTTGGT +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPWICTA*DSSALG
Trigger: ACCAAGTGCTGATGAATCTCAGGCCGTGCAAATCCA...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATTTCGTCCGTCATCTCTaGGAGGCACTTTGCTATACT +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHFVRHL*EALCYT
Trigger: AGTATAGCAAAGTGCCTCTCAGAGATGACGGACGAA...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTTCTGGGAAACCTGATTaGCACCTTCGTCCGTCATCT +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPSGKPD*HLRPSS
Trigger: AGATGACGGACGAAGGTGTCAATCAGGTTTCCCAGA...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGATCAGATCTTTCATCTaGAAGCATGGAAGCATGCTA +
Preference number: 4 (lower is better)
Translates to: ISVLNAQVPKECTLLLATIRSFI*KHGSML
Trigger: TAGCATGCTTCCATGCTTGCAGATGAAAGATCTGAT...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATTTCCAGAAGCCAGGATaGCGCAGAAGGCTTAGATAT +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENFQKPG*RRRLRY
Trigger: ATATCTAAGCCTTCTGCGGCATCCTGGCTTCTGGAA...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGATGGACGCAGCTTTTaGAATCAGTTTCTCCCACTG +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHDGRSF*NQFLPL
Trigger: CAGTGGGAGAAACTGATTGCAAAAGCTGCGTCCATC...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTTTCAATCCTGGTTaGTTGTTTGTTTCGTATGTC +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNGFNPG*LFVSYV
Trigger: GACATACGAAACAAACAAGCAACCAGGATTGAAACC...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTAGAGCCAGTGTTGTCTaGTTGAAGCTTCGCCCTCTA +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPRASVV*LKLRPL
Trigger: TAGAGGGCGAAGCTTCAAGCAGACAACACTGGCTCT...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAAGGTCTTCAATATGAGTaGTCTCATGTCACAGCTCAG +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEGLQYE*SHVTAQ
Trigger: CTGAGCTGTGACATGAGACCACTCATATTGAAGACC...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATTGTTGTATTCAAGACTaGGGTCAAAACAGCAGCTTT +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNCCIQD*GQNSSF
Trigger: AAAGCTGCTGTTTTGACCCCAGTCTTGAATACAACA...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTGTCCCAGCAGCCATATaGCATTTGATTGAAGGCCAA +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFVPAAI*HLIEGQ
Trigger: TTGGCCTTCAATCAAATGCCATATGGCTGCTGGGAC...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATTTGCCCACAGAGGCATaGATACCAGGAGGTATTTCT +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHLPTEA*IPGGIS
Trigger: AGAAATACCTCCTGGTATCCATGCCTCTGTGGGCAA...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATCAGTCAATGAACTTCTaGGTCTGTTCCTTCCATGGC +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENQSMNF*VCSFHG
Trigger: GCCATGGAAGGAACAGACCCAGAAGTTCATTGACTG...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCAGGGATAGCAGGGTaGCTTTCAAAAGGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPSGIAG*LSKGPW
Trigger: CCAAGGACCTTTTGAAAGCCACCCTGCTATCCCTGA...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACGTATGTCTTCAATATaGAGTTCGGGATTCCTGCTA +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGERMSSI*SSGFLL
Trigger: TAGCAGGAATCCCGAACTTCATATTGAAGACATACG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTAAGGCCAATCACTCCTaGGACACTGATAACCTCAGT +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPKANHS*DTDNLS
Trigger: ACTGAGGTTATCAGTGTCTCAGGAGTGATTGGCCTT...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTACGGAAGTTCTGCTTTaGTTTGAAGACAAGGTAGAC +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVATEVLL*FEDKVD
Trigger: GTCTACCTTGTCTTCAAATCAAAGCAGAACTTCCGT...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTTCGTCCGTCATCTCTaGGAGGCACTTTGCTATACT +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPFVRHL*EALCYT
Trigger: AGTATAGCAAAGTGCCTCTCAGAGATGACGGACGAA...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATCAAGAAGTTCAACACTaGGCTCTAAAAGGTGAATTA +
Preference number: 4 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNQEVQH*ALKGEL
Trigger: TAATTCACCTTTTAGAGCGCAGTGTTGAACTTCTTG...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATAGACAGAGACTTATATaGAGCACTTGCTACAGTGGG +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHRQRLI*STCYSG
Trigger: CCCACTGTAGCAAGTGCTGCATATAAGTCTCTGTCT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTGCCGATTCAGTGGCTTaGCATCTTTGCTCTGATACA +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPADSVA*HLCSDT
Trigger: TGTATCAGAGCAAAGATGGCAAGCCACTGAATCGGC...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCACCGGACTCTCTTTTaGAGCTGTCTTGGTGATCTC +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLHRTLF*SCLGDL
Trigger: GAGATCACCAAGACAGCTGCAAAAGAGAGTCCGGTG...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTGCTTCTGACTTCAGCTaGATGACATCCACATCAGAG +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPASDFS*MTSTSE
Trigger: CTCTGATGTGGATGTCATGCAGCTGAAGTCAGAAGC...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGACTTCATTAAGTCTTaGTTGAAAGTGGGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGDFIKS*LKVGVL
Trigger: CAGAACACCCACTTTCAAGCAAGACTTAATGAAGTC...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGTCCTTGGACTTTGCTaGAAAGGCTTTGTTAGGAAT +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAVLGLC*KGFVRN
Trigger: ATTCCTAACAAAGCCTTTGCAGCAAAGTCCAAGGAC...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACAGCACTTGCTACAGTaGGATTCTTGTTTTGAGTGT +
Preference number: 4 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEQHLLQ*DSCFEC
Trigger: ACACTCAAAACAAGAATCCCACTGTAGCAAGTGCTG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCATCAGCCGATTCAGTaGCTTGCCATCTTTGCTCTG +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLHQPIQ*LAIFAL
Trigger: CAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATG...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTGTCCCAGCAGCCATATaGCATTTGATTGAAGGCCAA +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPVPAAI*HLIEGQ
Trigger: TTGGCCTTCAATCAAATGCCATATGGCTGCTGGGAC...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCAGTCAATGAACTTCTaGGTCTGTTCCTTCCATGGC +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPQSMNF*VCSFHG
Trigger: GCCATGGAAGGAACAGACCCAGAAGTTCATTGACTG...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTAGGGTCTTCCCAATTTaGACATCAAAACTGGAATCA +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVARVFPI*TSKLES
Trigger: TGATTCCAGTTTTGATGTTCAAATTGGGAAGACCCT...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGTTTACATATATCTCTaGTGGACGCAGCTTTTGCAA +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAVYIYL*WTQLLQ
Trigger: TTGCAAAAGCTGCGTCCATCAGAGATATATGTAAAC...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTATCTTTTCTGGCAGGTaGAGAATGGTGTGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPIFSGR*RMVCSP
Trigger: TGGAGAACACACCATTCTTCACCTGCCAGAAAAGAT...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTTATGATAAAAGCAGGTaGAGAGTTGTCCACTGGGGT +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPYDKSR*RVVHWG
Trigger: ACCCCAGTGGACAACTCTTCACCTGCTTTTATCATA...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATTCATTAAGTCTTGCTTaGAAGTGGGTGTTCTGGATG +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHSLSLA*KWVFWM
Trigger: CATCCAGAACACCCACTTTCAAGCAAGACTTAATGA...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATAATATCTTCAGCCTCTaGAGCTTCAATAATGCCAGC +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHNIFSL*SFNNAS
Trigger: GCTGGCATTATTGAAGCTGCAGAGGCTGAAGATATT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGAGATACCACAGAAATaGCGCCATTATTTGGACACA +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHEIPQK*RHYLDT
Trigger: TGTGTCCAAATAATGGCGCCATTTCTGTGGTATCTC...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTTCCTTCCCTGTAAAATaGCATGGTAAGCTCGAGTCA +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPSFPVK*HGKLES
Trigger: TGACTCGAGCTTACCATGCCATTTTACAGGGAAGGA...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTTCTCCGAATCCTATTTaGCAGAAGGTCAAAAATTCT +
Preference number: 4 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGSPNPI*QKVKNS
Trigger: AGAATTTTTGACCTTCTGCCAAATAGGATTCGGAGA...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTATAGAATATATATCCTaGATGTCCTTTTCCCCGCTT +
Preference number: 4 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAIEYIS*MSFSPL
Trigger: AAGCGGGGAAAAGGACATTCAGGATATATATTCTAT...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTAACGGGAGTCGTCCTTaGGAGACTAAATACAACTTG +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLNGSRP*ETKYNL
Trigger: CAAGTTGTATTTAGTCTCTCAAGGACGACTCCCGTT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATATCAGATCTTTCATCTaGAAGCATGGAAGCATGCTA +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHIRSFI*KHGSML
Trigger: TAGCATGCTTCCATGCTTGCAGATGAAAGATCTGAT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTTGATCAGGCTTGGTaGATTCATTCAACACCTGAG +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLLDQAW*IHSTPE
Trigger: CTCAGGTGTTGAATGAATGCACCAAGCCTGATCAAG...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTAGAAAGATTGCACGGTaGCATTCTGAAAGCTGGACA +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLRKIAR*HSESWT
Trigger: TGTCCAGCTTTCAGAATGGCACCGTGCAATCTTTCT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGAAGAAACCAATGGCTaGTCTAATAAAACTGCCTTC +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENEETNG*SNKTAF
Trigger: GAAGGCAGTTTTATTAGAGCAGCCATTGGTTTCTTC...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTGTCCTTGGACTTTGCTaGAAAGGCTTTGTTAGGAAT +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPVLGLC*KGFVRN
Trigger: ATTCCTAACAAAGCCTTTGCAGCAAAGTCCAAGGAC...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTAAGGTCCTTGGACTTTaGTGCAAAGGCTTTGTTAGG +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLKVLGL*CKGFVR
Trigger: CCTAACAAAGCCTTTGCAGCAAAGTCCAAGGACCTT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTAATGGCGCCATTATTTaGACACATGAAGCTTCTGAC +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPNGAII*THEASD
Trigger: GTCAGAAGCTTCATGTGTCCAAATAATGGCGCCATT...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTTTTTCAACAAAACCCTaGATCTGTTCATCAGACACG +
Preference number: 4 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFFSTKP*ICSSDT
Trigger: CGTGTCTGATGAACAGATCCAGGGTTTTGTTGAAAA...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
42% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATCATATTCAACTGTATTaGCTGTTAAGGAAGGAACCA +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENHIQLY*LLRKEP
Trigger: TGGTTCCTTCCTTAACAGTCAATACAGTTGAATATG...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATCATATTCAACTGTATTaGCTGTTAAGGAAGGAACCA +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHHIQLY*LLRKEP
Trigger: TGGTTCCTTCCTTAACAGTCAATACAGTTGAATATG...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTAGTTCTGCTTTGATTTaGAGACAAGGTAGACAGATG +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPSSALI*RQGRQM
Trigger: CATCTGTCTACCTTGTCTTCAAATCAAAGCAGAACT...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTAGTTCTGCTTTGATTTaGAGACAAGGTAGACAGATG +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPSSALI*RQGRQM
Trigger: CATCTGTCTACCTTGTCTTCAAATCAAAGCAGAACT...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATATCATTTCTGTTGTCTaGATCAGATCTTTCATCTGC +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHIISVV*IRSFIC
Trigger: GCAGATGAAAGATCTGATGCAGACAACAGAAATGAT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATCAAGAAGTTCAACACTaGGCTCTAAAAGGTGAATTA +
Preference number: 4 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHQEVQH*ALKGEL
Trigger: TAATTCACCTTTTAGAGCGCAGTGTTGAACTTCTTG...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTCTTATATGCAGCACTTaGTACAGTGGGATTCTTGTT +
Preference number: 4 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPLICST*YSGILV
Trigger: AACAAGAATCCCACTGTAGCAAGTGCTGCATATAAG...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTGACTTCATTAAGTCTTaGTTGAAAGTGGGTGTTCTG +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPDFIKS*LKVGVL
Trigger: CAGAACACCCACTTTCAAGCAAGACTTAATGAAGTC...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTTTTTCAACAAAACCCTaGATCTGTTCATCAGACACG +
Preference number: 4 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPFSTKP*ICSSDT
Trigger: CGTGTCTGATGAACAGATCCAGGGTTTTGTTGAAAA...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR TCA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTATAGAATATATATCCTaGATGTCCTTTTCCCCGCTT +
Preference number: 4 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPIEYIS*MSFSPL
Trigger: AAGCGGGGAAAAGGACATTCAGGATATATATTCTAT...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTGGTTTCAATCCTGGTTaGTTGTTTGTTTCGTATGTC +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLGFNPG*LFVSYV
Trigger: GACATACGAAACAAACAAGCAACCAGGATTGAAACC...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATTTTGAACATCAAAACTaGAATCAGATTTGGTACCTG +
Preference number: 4 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENFEHQN*NQIWYL
Trigger: CAGGTACCAAATCTGATTCCAGTTTTGATGTTCAAA...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS-3UTR GCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTATCATTTCTGTTGTCTaGATCAGATCTTTCATCTGC +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLIISVV*IRSFIC
Trigger: GCAGATGAAAGATCTGATGCAGACAACAGAAATGAT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CCA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTTCTCCGAATCCTATTTaGCAGAAGGTCAAAAATTCT +
Preference number: 4 (lower is better)
Translates to: KSCSISVLNAQVPKECTLSPNPI*QKVKNS
Trigger: AGAATTTTTGACCTTCTGCCAAATAGGATTCGGAGA...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp ACTCAGACCGTGGATCAGTGGCGGCATCACCCACAAGCCCAGCAGTaGGGCCGCGCTCTGCGACGACGGTGCCTGAGTGACAGCAATCTC +
Preference number: 5 (lower is better)
Translates to: TQTVDQWRHHPQAQQ*GRALRRRCLSDSNL
Trigger: GAGATTGCTGTCACTCAGGCACCGTCGTCGCAGAGCGCGGCCTCACTGCTGGGCTTGTGGGTGATGCCGCCACTGATCCACGGTCTGAGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCCTCAGGGCCTTCCTaGCCGTGCTGCAGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMSSGPS*PCCSCS
Trigger: GCTGCAGCTGCAGCACGGCAAGGAAGGCCCTGAGGA...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp AGCTGCATGACATCCACATCAGAGCCTACCAGTGCCACCAGGCCATaGAGGGCAGCCAGACAGAGCATGGTGGGGGCACCCTCTGTCAGG +
Preference number: 5 (lower is better)
Translates to: SCMTSTSEPTSATRP*RAARQSMVGAPSVR
Trigger: CCTGACAGAGGGTGCCCCCACCATGCTCTGTCTGGCTGCCCTTCATGGCCTGGTGGCACTGGTAGGCTCTGATGTGGATGTCATGCAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp CCACCAGTCCCTCGCTGCAGGCTGTCCGCACAACCACATGGTCACTaGAGCACTTCTCCCACAGCAAGTTCAAGGCAGCCGTCTGGTTTG +
Preference number: 5 (lower is better)
Translates to: PPVPRCRLSAQPHGH*STSPTASSRQPSGL
Trigger: CAAACCAGACGGCTGCCTTGAACTTGCTGTGGGAGAAGTGCTGCAGTGACCATGTGGTTGTGCGGACAGCCTGCAGCGAGGGACTGGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp GTCAGCATGTCTCTGACCCAGAGCCAGGCTGTGCTTCGTTTGTATTaGACCTCCTCAGGGCCTTCCTTGCCGTGCTGCAGCTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: VSMSLTQSQAVLRLY*TSSGPSLPCCSCSS
Trigger: GGAGCTGCAGCTGCAGCACGGCAAGGAAGGCCCTGAGGAGGTGCAATACAAACGAAGCACAGCCTGGCTCTGGGTCAGAGACATGCTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp CTCTTGCACAGTGACTCTATGCATGGGACTCCTGCCAAGCAAGGCTaGTGCTGGCCCACCAGGGCCATTCTGCTGGTGCCATGGCAACCA +
Preference number: 5 (lower is better)
Translates to: LLHSDSMHGTPAKQG*CWPTRAILLVPWQP
Trigger: TGGTTGCCATGGCACCAGCAGAATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGCAGGAGTCCCATGCATAGAGTCACTGTGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CCA 90 bp ACAAGTGCCACCAGTCCCTCGCTGCAGGCTGTCCGCACAACCACATaGTCACTGCAGCACTTCTCCCACAGCAAGTTCAAGGCAGCCGTC +
Preference number: 5 (lower is better)
Translates to: TSATSPSLQAVRTTT*SLQHFSHSKFKAAV
Trigger: GACGGCTGCCTTGAACTTGCTGTGGGAGAAGTGCTGCAGTGACCATGTGGTTGTGCGGACAGCCTGCAGCGAGGGACTGGTGGCACTTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp ACCCACAAGCCCAGCAGTGAGGCCGCGCTCTGCGACGACGGTGCCTaGGTGACAGCAATCTCAAGGCACAGTTGCTGTATCTCTTCACCA +
Preference number: 5 (lower is better)
Translates to: THKPSSEAALCDDGA*VTAISRHSCCISSP
Trigger: TGGTGAAGAGATACAGCAACTGTGCCTTGAGATTGCTGTCACTCAGGCACCGTCGTCGCAGAGCGCGGCCTCACTGCTGGGCTTGTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp CCCATTGAGAACATAGCTGAACTCTGCATGACCCTGGGCGACAAGTaGCACCAGTCCCTCGCTGCAGGCTGTCCGCACAACCACATGGTC +
Preference number: 5 (lower is better)
Translates to: PIENIAELCMTLGDK*HQSLAAGCPHNHMV
Trigger: GACCATGTGGTTGTGCGGACAGCCTGCAGCGAGGGACTGGTGGCACTTGTCGCCCAGGGTCATGCAGAGTTCAGCTATGTTCTCAATGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp TTGCACAGTGACTCTATGCATGGGACTCCTGCCAAGCAAGGCTGCTaGTGGCCCACCAGGGCCATTCTGCTGGTGCCATGGCAACCAACT +
Preference number: 5 (lower is better)
Translates to: LHSDSMHGTPAKQGC*WPTRAILLVPWQPT
Trigger: AGTTGGTTGCCATGGCACCAGCAGAATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGCAGGAGTCCCATGCATAGAGTCACTGTGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CCA 90 bp TGGAGGGGCCTTCCTCACCCATGGCCAGACAGTCTTCCAGGGCAGTaGAAGATAGTATCTGCAGAAGAGGCACCAGGAGCAGCAGGGATG +
Preference number: 5 (lower is better)
Translates to: WRGLPHPWPDSLPGQ*KIVSAEEAPGAAGM
Trigger: CATCCCTGCTGCTCCTGGTGCCTCTTCTGCAGATACTATCTTCCACTGCCCTGGAAGACTGTCTGGCCATGGGTGAGGAAGGCCCCTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGGCGGCTGGAGTAGCTaGATCAGGCTTGGTGCATTC +
Preference number: 5 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMGGWSS*IRLGAF
Trigger: GAATGCACCAAGCCTGATCAAGCTACTCCAGCCGCC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp ACAAGCCCAGCAGTGAGGCCGCGCTCTGCGACGACGGTGCCTGAGTaGCAGCAATCTCAAGGCACAGTTGCTGTATCTCTTCACCAAAGT +
Preference number: 5 (lower is better)
Translates to: TSPAVRPRSATTVPE*QQSQGTVAVSLHQS
Trigger: ACTTTGGTGAAGAGATACAGCAACTGTGCCTTGAGATTGCTGTCACTCAGGCACCGTCGTCGCAGAGCGCGGCCTCACTGCTGGGCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp TGGATCTCTAGGACGCCATCGGAGTCTGAGCAAAGGCTGGCTTCATaGTTGGACACCACAACGGCCAGGCTGCTTAAGGCTAACAGGGCA +
Preference number: 5 (lower is better)
Translates to: WISRTPSESEQRLAS*LDTTTARLLKANRA
Trigger: TGCCCTGTTAGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAGACTCCGATGGCGTCCTAGAGATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTCCCACTGGAGCTCCTaGCCCACAGAGAGGGAGGGC +
Preference number: 5 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSSHWSS*PTEREG
Trigger: GCCCTCCCTCTCTGTGGGCAAGGAGCTCCAGTGGGA...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp AGAAGGAGTCAGGTTGAGTATCCCATTGAGAACATAGCTGAACTCTaGATGACCCTGGGCGACAAGTGCCACCAGTCCCTCGCTGCAGGC +
Preference number: 5 (lower is better)
Translates to: RRSQVEYPIENIAEL*MTLGDKCHQSLAAG
Trigger: GCCTGCAGCGAGGGACTGGTGGCACTTGTCGCCCAGGGTCATGCAGAGTTCAGCTATGTTCTCAATGGGATACTCAACCTGACTCCTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp TCACCCATGGCCAGACAGTCTTCCAGGGCAGTGGAAGATAGTATCTaGAGAAGAGGCACCAGGAGCAGCAGGGATGCCTTCGGGATTTTC +
Preference number: 5 (lower is better)
Translates to: SPMARQSSRAVEDSI*RRGTRSSRDAFGIF
Trigger: GAAAATCCCGAAGGCATCCCTGCTGCTCCTGGTGCCTCTTCTGCAGATACTATCTTCCACTGCCCTGGAAGACTGTCTGGCCATGGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp CTGAGCAAAGGCTGGCTTCATGCTTGGACACCACAACGGCCAGGCTaGTTAAGGCTAACAGGGCATTGGCTTTCACCACCGGACTCTCTT +
Preference number: 5 (lower is better)
Translates to: LSKGWLHAWTPQRPG*LRLTGHWLSPPDSL
Trigger: AAGAGAGTCCGGTGGTGAAAGCCAATGCCCTGTTAGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 90 bp AGGTCAAAAATTCTCCCAGTAGCATCGCAGAGCAGACTCCAGAGGTaGTGGGAAGGACTGGGCAGTTTCATGGCCTGGCTCAGACCCTGT +
Preference number: 5 (lower is better)
Translates to: RSKILPVASQSRLQR*WEGLGSFMAWLRPC
Trigger: ACAGGGTCTGAGCCAGGCCATGAAACTGCCCAGTCCTTCCCACCACCTCTGGAGTCTGCTCTGCGATGCTACTGGGAGAATTTTTGACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGATGTCACAGCTCAGCTaGGGAGAGAGAGCATTCCAA +
Preference number: 5 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMMSQLS*GERAFQ
Trigger: TTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACAT...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp GAGAGAAACATCCCCAACGCAAGGCCCATGTGGATTTGCACGGCCTaGGATTCATCAGCACTTGGTTTCCCAGGTAACCTGGCAGTCAGC +
Preference number: 5 (lower is better)
Translates to: ERNIPNARPMWICTA*DSSALGFPGNLAVS
Trigger: GCTGACTGCCAGGTTACCTGGGAAACCAAGTGCTGATGAATCTCAGGCCGTGCAAATCCACATGGGCCTTGCGTTGGGGATGTTTCTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp AAGCTGTGCAGGATCATCCACGCTAGAGTCTCCTTCTCGGGGTGCTaGATAGCAGCAGTGAGTAGATCAGTCAGGCTCATCAACGGGAGT +
Preference number: 5 (lower is better)
Translates to: KLCRIIHARVSFSGC*IAAVSRSVRLINGS
Trigger: ACTCCCGTTGATGAGCCTGACTGATCTACTCACTGCTGCTATGCAGCACCCCGAGAAGGAGACTCTAGCGTGGATGATCCTGCACAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp ACACCTGTGTTGGCATGGTTGACGATGCGTGCCTGGTATAAGCTGTaGAGGATCATCCACGCTAGAGTCTCCTTCTCGGGGTGCTGCATA +
Preference number: 5 (lower is better)
Translates to: TPVLAWLTMRAWYKL*RIIHARVSFSGCCI
Trigger: TATGCAGCACCCCGAGAAGGAGACTCTAGCGTGGATGATCCTGCACAGCTTATACCAGGCACGCATCGTCAACCATGCCAACACAGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTCCTGTGGAAGAAAGATaGCACGGTGCCATTCTGAAA +
Preference number: 5 (lower is better)
Translates to: AQVPKECTLLLATHTVRCPVEER*HGAILK
Trigger: TTTCAGAATGGCACCGTGCAATCTTTCTTCCACAGG...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp CCTGGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCCAGGCTGTGCTTCGTTaGTATTGCACCTCCTCAGGG +
Preference number: 5 (lower is better)
Translates to: PGHAHSEMSVCSHLLMTSQAVLR*YCTSSG
Trigger: CCCTGAGGAGGTGCAATACAAACGAAGCACAGCCTG...GGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGTGCAGCCATATGGCATTaGATTGAAGGCCAATCACTC +
Preference number: 5 (lower is better)
Translates to: AQVPKECTLLLATHTVRCAAIWH*IEGQSL
Trigger: GAGTGATTGGCCTTCAATCAAATGCCATATGGCTGC...ACATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp TGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGATGGCAGCCATATGGCATTaGATTGAAGGCCAATCACTC +
Preference number: 5 (lower is better)
Translates to: CPGTQGMHPSPGHAHSEMAAIWH*IEGQSL
Trigger: GAGTGATTGGCCTTCAATCAAATGCCATATGGCTGC...CATCTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp ATCAGATCTTTCATCTGCAAGCATGGAAGCATGCTACAGCACAGCTaGAGGGTGCTCTGCTCCCGTACTGACAGCTGCGCTTCCTCACAG +
Preference number: 5 (lower is better)
Translates to: IRSFICKHGSMLQHS*RVLCSRTDSCASSQ
Trigger: CTGTGAGGAAGCGCAGCTGTCAGTACGGGAGCAGAGCACCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGCAGATGAAAGATCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp ACACACGATCCTGCTTTTCCCACAGAGATGTCAACAGGCGCAACGTaGCAGCTCTTAGTCGTGGAGTGGTCCCAAGCAGCTGAATTACCC +
Preference number: 5 (lower is better)
Translates to: THDPAFPTEMSTGAT*QLLVVEWSQAAELP
Trigger: GGGTAATTCAGCTGCTTGGGACCACTCCACGACTAAGAGCTGTCACGTTGCGCCTGTTGACATCTCTGTGGGAAAAGCAGGATCGTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp TATAAGCTGTGCAGGATCATCCACGCTAGAGTCTCCTTCTCGGGGTaGTGCATAGCAGCAGTGAGTAGATCAGTCAGGCTCATCAACGGG +
Preference number: 5 (lower is better)
Translates to: YKLCRIIHARVSFSG*CIAAVSRSVRLING
Trigger: CCCGTTGATGAGCCTGACTGATCTACTCACTGCTGCTATGCAGCACCCCGAGAAGGAGACTCTAGCGTGGATGATCCTGCACAGCTTATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp TTCCATGGCTCTTTTTGTAGCAGCAGTAGCATGCTCCTGGGGAGCTaGGTGAGAACCTCTTGCACAGTGACTCTATGCATGGGACTCCTG +
Preference number: 5 (lower is better)
Translates to: FHGSFCSSSSMLLGS*VRTSCTVTLCMGLL
Trigger: CAGGAGTCCCATGCATAGAGTCACTGTGCAAGAGGTTCTCACTCAGCTCCCCAGGAGCATGCTACTGCTGCTACAAAAAGAGCCATGGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CCA 90 bp TGGCCATCAGCCGATTCAGTGGCTTGCCATCTTTGCTCTGATACATaGCAAGATCATAGCAAAACAGCATGCCACCTGCCAGGCCAGGTT +
Preference number: 5 (lower is better)
Translates to: WPSADSVACHLCSDT*QDHSKTACHLPGQV
Trigger: AACCTGGCCTGGCAGGTGGCATGCTGTTTTGCTATGATCTTGCCATGTATCAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCCCACTGGAGCTCCTaGCCCACAGAGAGGGAGGGC +
Preference number: 5 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPSHWSS*PTEREG
Trigger: GCCCTCCCTCTCTGTGGGCAAGGAGCTCCAGTGGGA...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGCACACAGTGAGAGTGGGATTCTTGTTTaGAGTGTGAGTCCAGAGGAA +
Preference number: 5 (lower is better)
Translates to: KCPGTQGMHPSPGHAHSESGILV*SVSPEE
Trigger: TTCCTCTGGACTCACACTCAAAACAAGAATCCCACT...CTCACTGTGTGCGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp TGCAGAAGAGGCACCAGGAGCAGCAGGGATGCCTTCGGGATTTTCTaGCCCTCAGTAAGCGAGAGGAGCTTCAAAGCTAGGTTTAATAGT +
Preference number: 5 (lower is better)
Translates to: CRRGTRSSRDAFGIF*PSVSERSFKARFNS
Trigger: ACTATTAAACCTAGCTTTGAAGCTCCTCTCGCTTACTGAGGGTCAGAAAATCCCGAAGGCATCCCTGCTGCTCCTGGTGCCTCTTCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp CTTCAATATGAAGTTCGGGATTCCTGCTACTGTCTTCCCTTGGTCTaGGCGCACGCCTCCTTTCAATGCAGAGTGATATATCCCACGGGG +
Preference number: 5 (lower is better)
Translates to: LQYEVRDSCYCLPLV*AHASFQCRVIYPTG
Trigger: CCCCGTGGGATATATCACTCTGCATTGAAAGGAGGCGTGCGCTCAGACCAAGGGAAGACAGTAGCAGGAATCCCGAACTTCATATTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp TTCGCCCTCTACTGGCCATCAGCCGATTCAGTGGCTTGCCATCTTTaGTCTGATACATGGCAAGATCATAGCAAAACAGCATGCCACCTG +
Preference number: 5 (lower is better)
Translates to: FALYWPSADSVACHL*SDTWQDHSKTACHL
Trigger: CAGGTGGCATGCTGTTTTGCTATGATCTTGCCATGTATCAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATGGCCAGTAGAGGGCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 90 bp AATCTCTTCAACACACCTGTGTTGGCATGGTTGACGATGCGTGCCTaGTATAAGCTGTGCAGGATCATCCACGCTAGAGTCTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: NLFNTPVLAWLTMRA*YKLCRIIHARVSFS
Trigger: CGAGAAGGAGACTCTAGCGTGGATGATCCTGCACAGCTTATACCAGGCACGCATCGTCAACCATGCCAACACAGGTGTGTTGAAGAGATT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGGCCACGGTCCTTTTCCCCGCTTaGTCCTTCTCTCAGTGCTTG +
Preference number: 5 (lower is better)
Translates to: ISVLNAQVPKECTLLLATVLFPA*SFSQCL
Trigger: CAAGCACTGAGAGAAGGACAAAGCGGGGAAAAGGAC...CGTGGCCAGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTTCCTCAGGGCCTTCCTaGCCGTGCTGCAGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: KSCSISVLNAQVPKECTLSSGPS*PCCSCS
Trigger: GCTGCAGCTGCAGCACGGCAAGGAAGGCCCTGAGGA...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATCTGGGGCGAAGTCTGTaGCCCAAGTCTTCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNLGRSL*PKSSAF
Trigger: AAAAGCTGAAGACTTGGGCAACAGACTTCGCCCCAG...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp ACTGTCTTCCCTTGGTCTGAGCGCACGCCTCCTTTCAATGCAGAGTaGTATATCCCACGGGGCATATTCACCATCTCTTGTCTCACAAGA +
Preference number: 5 (lower is better)
Translates to: TVFPWSERTPPFNAE*YIPRGIFTISCLTR
Trigger: TCTTGTGAGACAAGAGATGGTGAATATGCCCCGTGGGATATATCACTCTGCATTGAAAGGAGGCGTGCGCTCAGACCAAGGGAAGACAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp TTTCTGTTGTCTGCATCAGATCTTTCATCTGCAAGCATGGAAGCATaGTACAGCACAGCTGAAGGGTGCTCTGCTCCCGTACTGACAGCT +
Preference number: 5 (lower is better)
Translates to: FLLSASDLSSASMEA*YSTAEGCSAPVLTA
Trigger: AGCTGTCAGTACGGGAGCAGAGCACCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGCAGATGAAAGATCTGATGCAGACAACAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp CTGATAGGGCCTCTGTTTACATATATCTCTGATGGACGCAGCTTTTaGAATCAGTTTCTCCCACTGGAGCTCCTTGCCCACAGAGAGGGA +
Preference number: 5 (lower is better)
Translates to: LIGPLFTYISDGRSF*NQFLPLELLAHREG
Trigger: TCCCTCTCTGTGGGCAAGGAGCTCCAGTGGGAGAAACTGATTGCAAAAGCTGCGTCCATCAGAGATATATGTAAACAGAGGCCCTATCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 90 bp CAGCATCATTTCTGTTGTCTGCATCAGATCTTTCATCTGCAAGCATaGAAGCATGCTACAGCACAGCTGAAGGGTGCTCTGCTCCCGTAC +
Preference number: 5 (lower is better)
Translates to: QHHFCCLHQIFHLQA*KHATAQLKGALLPY
Trigger: GTACGGGAGCAGAGCACCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGCAGATGAAAGATCTGATGCAGACAACAGAAATGATGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 90 bp TTCATCCAGCTCACCAGGAACAGGCATCTCTGGCCTTATCTTTTCTaGCAGGTGAAGAATGGTGTGTTCTCCAGCACTGAAGTGAGACAG +
Preference number: 5 (lower is better)
Translates to: FIQLTRNRHLWPYLF*QVKNGVFSSTEVRQ
Trigger: CTGTCTCACTTCAGTGCTGGAGAACACACCATTCTTCACCTGCCAGAAAAGATAAGGCCAGAGATGCCTGTTCCTGGTGAGCTGGATGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCGAGATTCATCAGCACTaGGTTTCCCAGGTAACCTGG +
Preference number: 5 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSEIHQH*VSQVTW
Trigger: CCAGGTTACCTGGGAAACCAAGTGCTGATGAATCTC...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTGGTTTCATCACTACTTaGAGAAGGGATGGAGGCACA +
Preference number: 5 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTGFITT*RRDGGT
Trigger: TGTGCCTCCATCCCTTCTCAAAGTAGTGATGAAACC...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATTTCAACACACCTGTGTaGGCATGGTTGACGATGCGT +
Preference number: 5 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNFNTPV*AWLTMR
Trigger: ACGCATCGTCAACCATGCCAACACAGGTGTGTTGAA...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTGCTTTCAAAAGGTCCTaGGACTTTGCTGCAAAGGCT +
Preference number: 5 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTAFKRS*DFAAKA
Trigger: AGCCTTTGCAGCAAAGTCCAAGGACCTTTTGAAAGC...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS TCA 90 bp GCATGTCTGCACCATGCTGATAGGGCCTCTGTTTACATATATCTCTaGTGGACGCAGCTTTTGCAATCAGTTTCTCCCACTGGAGCTCCT +
Preference number: 5 (lower is better)
Translates to: ACLHHADRASVYIYL*WTQLLQSVSPTGAP
Trigger: AGGAGCTCCAGTGGGAGAAACTGATTGCAAAAGCTGCGTCCATCAGAGATATATGTAAACAGAGGCCCTATCAGCATGGTGCAGACATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp AGAAAGATTGCACGGTGCCATTCTGAAAGCTGGACATGGACTTCATaGATGAGAGCCAGTGTTGTCTGCTTGAAGCTTCGCCCTCTACTG +
Preference number: 5 (lower is better)
Translates to: RKIARCHSESWTWTS*MRASVVCLKLRPLL
Trigger: CAGTAGAGGGCGAAGCTTCAAGCAGACAACACTGGCTCTCATTCATGAAGTCCATGTCCAGCTTTCAGAATGGCACCGTGCAATCTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp ATCAAAACTGGAATCAGATTTGGTACCGTGTGGCTGTCGTCTCCGTaGCGCTCTTTCTGTAGCACTTCCACAAGACTGAGAGCTAACTGC +
Preference number: 5 (lower is better)
Translates to: IKTGIRFGTVWLSSP*RSFCSTSTRLRANC
Trigger: GCAGTTAGCTCTCAGTCTTGTGGAAGTGCTACAGAAAGAGCGTCACGGAGACGACAGCCACACGGTACCAAATCTGATTCCAGTTTTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159342.8
CDS CCA 90 bp TGTCTGCTTGAAGCTTCGCCCTCTACTGGCCATCAGCCGATTCAGTaGCTTGCCATCTTTGCTCTGATACATGGCAAGATCATAGCAAAA +
Preference number: 5 (lower is better)
Translates to: CLLEASPSTGHQPIQ*LAIFALIHGKIIAK
Trigger: TTTTGCTATGATCTTGCCATGTATCAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATGGCCAGTAGAGGGCGAAGCTTCAAGCAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 90 bp TTTGCACGGCCTGAGATTCATCAGCACTTGGTTTCCCAGGTAACCTaGCAGTCAGCATGTTCAGGATTTCCTCAACCTTCTCTTTGCATG +
Preference number: 5 (lower is better)
Translates to: FARPEIHQHLVSQVT*QSACSGFPQPSLCM
Trigger: CATGCAAAGAGAAGGTTGAGGAAATCCTGAACATGCTGACTGCCAGGTTACCTGGGAAACCAAGTGCTGATGAATCTCAGGCCGTGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGCAGAAGGAGTCAGGTaGAGTATCCCATTGAGAACA +
Preference number: 5 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNAEGVR*SIPLRT
Trigger: TGTTCTCAATGGGATACTCAACCTGACTCCTTCTGC...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTGGCGGCTGGAGTAGCTaGATCAGGCTTGGTGCATTC +
Preference number: 5 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPGGWSS*IRLGAF
Trigger: GAATGCACCAAGCCTGATCAAGCTACTCCAGCCGCC...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTGCCAGTGTTGTCTGCTaGAAGCTTCGCCCTCTACTG +
Preference number: 5 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFASVVC*KLRPLL
Trigger: CAGTAGAGGGCGAAGCTTCAAGCAGACAACACTGGC...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTTGTGCTTCGTTTGTATaGCACCTCCTCAGGGCCTTC +
Preference number: 5 (lower is better)
Translates to: VLKSFCFSGLSPPMENVACASFV*HLLRAF
Trigger: GAAGGCCCTGAGGAGGTGCAATACAAACGAAGCACA...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACATCAGACACGTGCTTaGCCCACAGAGGCATGGATA +
Preference number: 5 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEHQTRA*PTEAWI
Trigger: TATCCATGCCTCTGTGGGCAAAGCACGTGTCTGATG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp GCAGCAGTGAGTAGATCAGTCAGGCTCATCAACGGGAGTCGTCCTTaGGAGACTAAATACAACTTGACAAAGGCGGCCTTTTCTATGTTG +
Preference number: 5 (lower is better)
Translates to: AAVSRSVRLINGSRP*ETKYNLTKAAFSML
Trigger: CAACATAGAAAAGGCCGCCTTTGTCAAGTTGTATTTAGTCTCTCAAGGACGACTCCCGTTGATGAGCCTGACTGATCTACTCACTGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 90 bp GGAAGGAACCAAAGAGAACAGTTCACTCAGGGTCTTCAATATGAGTaGTCTCATGTCACAGCTCAGCTTGGGAGAGAGAGCATTCCAAGT +
Preference number: 5 (lower is better)
Translates to: GRNQREQFTQGLQYE*SHVTAQLGRESIPS
Trigger: ACTTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACATGAGACCACTCATATTGAAGACCCTGAGTGAACTGTTCTCTTTGGTTCCTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGTCCTTTTCCCCGCTTaGTCCTTCTCTCAGTGCTTG +
Preference number: 5 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHVLFPA*SFSQCL
Trigger: CAAGCACTGAGAGAAGGACAAAGCGGGGAAAAGGAC...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTATGTCACAGCTCAGCTaGGGAGAGAGAGCATTCCAA +
Preference number: 5 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAMSQLS*GERAFQ
Trigger: TTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACAT...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGCCAGTGTTGTCTGCTaGAAGCTTCGCCCTCTACTG +
Preference number: 5 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPASVVC*KLRPLL
Trigger: CAGTAGAGGGCGAAGCTTCAAGCAGACAACACTGGC...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCAGGCTGTGCTTCGTTaGTATTGCACCTCCTCAGGG +
Preference number: 5 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPQAVLR*YCTSSG
Trigger: CCCTGAGGAGGTGCAATACAAACGAAGCACAGCCTG...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAAGAGATTCATCAGCACTaGGTTTCCCAGGTAACCTGG +
Preference number: 5 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEEIHQH*VSQVTW
Trigger: CCAGGTTACCTGGGAAACCAAGTGCTGATGAATCTC...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATAAGGCCCATGTGGATTaGCACGGCCTGAGATTCATC +
Preference number: 5 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENKAHVD*HGLRFI
Trigger: GATGAATCTCAGGCCGTGCAAATCCACATGGGCCTT...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GGCCACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATAAGAAGGTTCATCTGTaGTCCAGACATGTCACTGAG +
Preference number: 5 (lower is better)
Translates to: GHAHSEMSVCSHLLMTSNKKVHL*SRHVTE
Trigger: CTCAGTGACATGTCTGGACAACAGATGAACCTTCTT...ATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTGGCC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATCTGGGGCGAAGTCTGTaGCCCAAGTCTTCAGCTTTT +
Preference number: 5 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENLGRSL*PKSSAF
Trigger: AAAAGCTGAAGACTTGGGCAACAGACTTCGCCCCAG...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAGCTTTCCCCAACAGTaGCTATGGGTTTCATCACTA +
Preference number: 5 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSSFPQQ*LWVSSL
Trigger: TAGTGATGAAACCCATAGCAACTGTTGGGGAAAGCT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp TTAAGGAAGGAACCAAAGAGAACAGTTCACTCAGGGTCTTCAATATaGGTGGTCTCATGTCACAGCTCAGCTTGGGAGAGAGAGCATTCC +
Preference number: 5 (lower is better)
Translates to: LRKEPKRTVHSGSSI*VVSCHSSAWEREHS
Trigger: GGAATGCTCTCTCTCCCAAGCTGAGCTGTGACATGAGACCACTCATATTGAAGACCCTGAGTGAACTGTTCTCTTTGGTTCCTTCCTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp GCCTTATCTTTTCTGGCAGGTGAAGAATGGTGTGTTCTCCAGCACTaGAGTGAGACAGAGACTTATATGCAGCACTTGCTACAGTGGGAT +
Preference number: 5 (lower is better)
Translates to: ALSFLAGEEWCVLQH*SETETYMQHLLQWD
Trigger: ATCCCACTGTAGCAAGTGCTGCATATAAGTCTCTGTCTCACTTCAGTGCTGGAGAACACACCATTCTTCACCTGCCAGAAAAGATAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp TCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTGTGACTACAGCATCATTTCTGTaGTCTGCATCAGATCTTTCA +
Preference number: 5 (lower is better)
Translates to: SVSLVCLLPWRMLLGPVTTASFL*SASDLS
Trigger: TGAAAGATCTGATGCAGACAACAGAAATGATGCTGT...AGTCACAGGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAACCTGTGGAAGAAAGATaGCACGGTGCCATTCTGAAA +
Preference number: 5 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEPVEER*HGAILK
Trigger: TTTCAGAATGGCACCGTGCAATCTTTCTTCCACAGG...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTTGTGCTTCGTTTGTATaGCACCTCCTCAGGGCCTTC +
Preference number: 5 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPCASFV*HLLRAF
Trigger: GAAGGCCCTGAGGAGGTGCAATACAAACGAAGCACA...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTAAGGCCCATGTGGATTaGCACGGCCTGAGATTCATC +
Preference number: 5 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPKAHVD*HGLRFI
Trigger: GATGAATCTCAGGCCGTGCAAATCCACATGGGCCTT...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCAATCTCAAGGCACAGTaGCTGTATCTCTTCACCAAA +
Preference number: 5 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSNLKAQ*LYLFTK
Trigger: TTTGGTGAAGAGATACAGCAACTGTGCCTTGAGATT...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp CATAGATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCATCAGACACGTGCTTaGCCCACAGAGGCATGGATA +
Preference number: 5 (lower is better)
Translates to: HRSQIAVLKSFCFSGLSPHQTRA*PTEAWI
Trigger: TATCCATGCCTCTGTGGGCAAAGCACGTGTCTGATG...AGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGATCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATTTCAACACACCTGTGTaGGCATGGTTGACGATGCGT +
Preference number: 5 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHFNTPV*AWLTMR
Trigger: ACGCATCGTCAACCATGCCAACACAGGTGTGTTGAA...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATTTCAACACACCTGTGTaGGCATGGTTGACGATGCGT +
Preference number: 5 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENFNTPV*AWLTMR
Trigger: ACGCATCGTCAACCATGCCAACACAGGTGTGTTGAA...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAAAAACTGGAATCAGATTaGGTACCGTGTGGCTGTCGT +
Preference number: 5 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEKLESD*VPCGCR
Trigger: ACGACAGCCACACGGTACCAAATCTGATTCCAGTTT...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000159342.8
CDS TCA 90 bp TCAGATTTGGTACCTGAGAGGAATCTGCTTGAGCTAACTGTGTGGTaGCCCTCAGTATCTGCTGAAGATTCTGCCCTACATCTTCAACAA +
Preference number: 5 (lower is better)
Translates to: SDLVPERNLLELTVW*PSVSAEDSALHLQQ
Trigger: TTGTTGAAGATGTAGGGCAGAATCTTCAGCAGATACTGAGGGTCACCACACAGTTAGCTCAAGCAGATTCCTCTCAGGTACCAAATCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS GCA 90 bp CAGGTTTTCAACAAAACCCTGGATCTGTTCATCAGACACGTGCTTTaGCCACAGAGGCATGGATACCAGGAGGTATTTCTTGATATTCAG +
Preference number: 5 (lower is better)
Translates to: QVFNKTLDLFIRHVL*PQRHGYQEVFLDIQ
Trigger: CTGAATATCAAGAAATACCTCCTGGTATCCATGCCTCTGTGGGCAAAGCACGTGTCTGATGAACAGATCCAGGGTTTTGTTGAAAACCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTGCAGAAGGAGTCAGGTaGAGTATCCCATTGAGAACA +
Preference number: 5 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFAEGVR*SIPLRT
Trigger: TGTTCTCAATGGGATACTCAACCTGACTCCTTCTGC...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTGGTTTCATCACTACTTaGAGAAGGGATGGAGGCACA +
Preference number: 5 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFGFITT*RRDGGT
Trigger: TGTGCCTCCATCCCTTCTCAAAGTAGTGATGAAACC...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGACTAAATACAACTaGACAAAGGCGGCCTTTTCT +
Preference number: 5 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGETKYN*TKAAFS
Trigger: AGAAAAGGCCGCCTTTGTCAAGTTGTATTTAGTCTC...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGCTTTCAAAAGGTCCTaGGACTTTGCTGCAAAGGCT +
Preference number: 5 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENAFKRS*DFAAKA
Trigger: AGCCTTTGCAGCAAAGTCCAAGGACCTTTTGAAAGC...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS TCA 90 bp CTTAGTAATCTGGGAAACCTGATTGACACCTTCGTCCGTCATCTCTaGGAGGCACTTTGCTATACTGATGTACAGCTCGAGATCATTTCT +
Preference number: 5 (lower is better)
Translates to: LSNLGNLIDTFVRHL*EALCYTDVQLEIIS
Trigger: AGAAATGATCTCGAGCTGTACATCAGTATAGCAAAGTGCCTCTCAGAGATGACGGACGAAGGTGTCAATCAGGTTTCCCAGATTACTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 90 bp AAGAATGGTGTGTTCTCCAGCACTGAAGTGAGACAGAGACTTATATaGAGCACTTGCTACAGTGGGATTCTTGTTTTGAGTGTGAGTCCA +
Preference number: 5 (lower is better)
Translates to: KNGVFSSTEVRQRLI*STCYSGILVLSVSP
Trigger: TGGACTCACACTCAAAACAAGAATCCCACTGTAGCAAGTGCTGCATATAAGTCTCTGTCTCACTTCAGTGCTGGAGAACACACCATTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 90 bp TGCTATACTGATGTACAGCTCGAGATCATTTCTCCGAATCCTATTTaGCAGAAGGTCAAAAATTCTCCCAGTAGCATCGCAGAGCAGACT +
Preference number: 5 (lower is better)
Translates to: CYTDVQLEIISPNPI*QKVKNSPSSIAEQT
Trigger: AGTCTGCTCTGCGATGCTACTGGGAGAATTTTTGACCTTCTGCCAAATAGGATTCGGAGAAATGATCTCGAGCTGTACATCAGTATAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTTCTTTTGCAGCTGTCTaGGTGATCTCATCTGTCAGC +
Preference number: 5 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPSFAAV*VISSVS
Trigger: GCTGACAGATGAGATCACCAAGACAGCTGCAAAAGA...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTGGGTCCTCCTCAACCTTCTCTTaGCATGAGATAATGAAAACT +
Preference number: 5 (lower is better)
Translates to: KSFCFSGLSPPMENVAGSSSTFS*HEIMKT
Trigger: AGTTTTCATTATCTCATGCAAAGAGAAGGTTGAGGA...GGACCCAGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATAAGAAGGTTCATCTGTaGTCCAGACATGTCACTGAG +
Preference number: 5 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENKKVHL*SRHVTE
Trigger: CTCAGTGACATGTCTGGACAACAGATGAACCTTCTT...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTAGCTTTCCCCAACAGTaGCTATGGGTTTCATCACTA +
Preference number: 5 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFSFPQQ*LWVSSL
Trigger: TAGTGATGAAACCCATAGCAACTGTTGGGGAAAGCT...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATACCAGGAGGTATTTCTaGATATTCAGACTCAGACCG +
Preference number: 5 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHTRRYF*IFRLRP
Trigger: CGGTCTGAGTCTGAATATCAAGAAATACCTCCTGGT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTACCAGGAGGTATTTCTaGATATTCAGACTCAGACCG +
Preference number: 5 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFTRRYF*IFRLRP
Trigger: CGGTCTGAGTCTGAATATCAAGAAATACCTCCTGGT...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp CACGCACACAGTGAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTTTCTCCGAATCCTATTaGGCAGAAGGTCAAAAATTC +
Preference number: 5 (lower is better)
Translates to: HAHSEMSVCSHLLMTSNGFSESY*AEGQKF
Trigger: GAATTTTTGACCTTCTGCCAAATAGGATTCGGAGAA...ACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTCACTGTGTGCGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTAGTGGGATTCTTGTTTaGAGTGTGAGTCCAGAGGAA +
Preference number: 5 (lower is better)
Translates to: EVMFYFSFKCPGTQGMHPSGILV*SVSPEE
Trigger: TTCCTCTGGACTCACACTCAAAACAAGAATCCCACT...AGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATACTTATATGCAGCACTaGCTACAGTGGGATTCTTGT +
Preference number: 5 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHTYMQH*LQWDSC
Trigger: ACAAGAATCCCACTGTAGCAAGTGCTGCATATAAGT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATTCAATCCTGGTTGCTaGTTTGTTTCGTATGTCTTC +
Preference number: 5 (lower is better)
Translates to: DSSPKKLLFLWSVSSHGEFNPGC*FVSYVF
Trigger: GAAGACATACGAAACAAACAAGCAACCAGGATTGAA...TTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATGTTGCTATCCTGGTTGCTTGTTaGTTTCGTATGTCTTCAATA +
Preference number: 5 (lower is better)
Translates to: VLKSFCFSGLSPPMENVAILVAC*FRMSSI
Trigger: TATTGAAGACATACGAAACAAACAAGCAACCAGGAT...AGCAACATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp GAGATGTCAGTATGTAGCCATCTTCTCATGACCTCCAATGGTGAGGATCACTTTTTCAATCCTGGTTGCTaGTTTGTTTCGTATGTCTTC +
Preference number: 5 (lower is better)
Translates to: EMSVCSHLLMTSNGEDHFFNPGC*FVSYVF
Trigger: GAAGACATACGAAACAAACAAGCAACCAGGATTGAA...AAAGTGATCCTCACCATTGGAGGTCATGAGAAGATGGCTACATACTGACATCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTAATCTCAAGGCACAGTaGCTGTATCTCTTCACCAAA +
Preference number: 5 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPNLKAQ*LYLFTK
Trigger: TTTGGTGAAGAGATACAGCAACTGTGCCTTGAGATT...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATTTCTCCGAATCCTATTaGGCAGAAGGTCAAAAATTC +
Preference number: 5 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHFSESY*AEGQKF
Trigger: GAATTTTTGACCTTCTGCCAAATAGGATTCGGAGAA...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTCTCCTGAGACTAAATACAACTaGACAAAGGCGGCCTTTTCT +
Preference number: 5 (lower is better)
Translates to: MFYFSFKCPGTQGMHPSPETKYN*TKAAFS
Trigger: AGAAAAGGCCGCCTTTGTCAAGTTGTATTTAGTCTC...AGGAGAAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 90 bp GTAAGCGAGAGGAGCTTCAAAGCTAGGTTTAATAGTGGCTTCTGTTaGCTTGCTGGCATCTGTAGAAGTAGTAAAGCAATTCCAATAATG +
Preference number: 5 (lower is better)
Translates to: VSERSFKARFNSGFC*LAGICRSSKAIPIM
Trigger: CATTATTGGAATTGCTTTACTACTTCTACAGATGCCAGCAAGTCAACAGAAGCCACTATTAAACCTAGCTTTGAAGCTCCTCTCGCTTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp AAGTCATGTTCTATTTCAGTTTTAAATGCCCAGGTACCCAAGGAATGCACCCTTAAACTGGAATCAGATTaGGTACCTGAGAGGAATCTG +
Preference number: 5 (lower is better)
Translates to: KSCSISVLNAQVPKECTLKLESD*VPERNL
Trigger: CAGATTCCTCTCAGGTACCAAATCTGATTCCAGTTT...AAGGGTGCATTCCTTGGGTACCTGGGCATTTAAAACTGAAATAGAACATGACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS-3UTR CAA 90 bp ATCTCAGATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATATCCTGGTTGCTTGTTaGTTTCGTATGTCTTCAATA +
Preference number: 5 (lower is better)
Translates to: ISDSSPKKLLFLWSVSSHILVAC*FRMSSI
Trigger: TATTGAAGACATACGAAACAAACAAGCAACCAGGAT...ATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTATCTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS-3UTR CAA 90 bp ATAGCAGTCCTAAAAAGCTTCTGTTTCTCTGGTCTGTCTCCTCCCATGGAGAATTCCTCAACCTTCTCTTaGCATGAGATAATGAAAACT +
Preference number: 5 (lower is better)
Translates to: IAVLKSFCFSGLSPPMENSSTFS*HEIMKT
Trigger: AGTTTTCATTATCTCATGCAAAGAGAAGGTTGAGGA...ATTCTCCATGGGAGGAGACAGACCAGAGAAACAGAAGCTTTTTAGGACTGCTAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp CATGACCCTGGGCGACAAGTGCCACCAGTCCCTCGCTaGAGGCTGTCCGCACAACCACATGGTCACTGCAGC +
Preference number: 6 (lower is better)
Translates to: HDPGRQVPPVPR*RLSAQPHGHCS
Trigger: GCTGCAGTGACCATGTGGTTGTGCGGACAGCCTGCAGCGAGGGACTGGTGGCACTTGTCGCCCAGGGTCATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp GCTGCCACATGGACCCGGGACTCCGTGTGGCTGCTGTaGCTCATGAGGGACAGGGCAAGTCCAACTCCCAGA +
Preference number: 6 (lower is better)
Translates to: AATWTRDSVWLL*LMRDRASPTPR
Trigger: TCTGGGAGTTGGACTTGCCCTGTCCCTCATGAGCCACAGCAGCCACACGGAGTCCCGGGTCCATGTGGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp GACTCTATGCATGGGACTCCTGCCAAGCAAGGCTGCTaGTGGCCCACCAGGGCCATTCTGCTGGTGCCATGG +
Preference number: 6 (lower is better)
Translates to: DSMHGTPAKQGC*WPTRAILLVPW
Trigger: CCATGGCACCAGCAGAATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGCAGGAGTCCCATGCATAGAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CCA 72 bp TGCTGCTGGCCCACCAGGGCCATTCTGCTGGTGCCATaGCAACCAACTGGCACTAAGGCCAAGGAGAAGGGG +
Preference number: 6 (lower is better)
Translates to: CCWPTRAILLVP*QPTGTKAKEKG
Trigger: CCCCTTCTCCTTGGCCTTAGTGCCAGTTGGTTGCCATGGCACCAGCAGAATGGCCCTGGTGGGCCAGCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS TCA 72 bp CCCAGCAGTGAGGCCGCGCTCTGCGACGACGGTGCCTaGGTGACAGCAATCTCAAGGCACAGTTGCTGTATC +
Preference number: 6 (lower is better)
Translates to: PSSEAALCDDGA*VTAISRHSCCI
Trigger: GATACAGCAACTGTGCCTTGAGATTGCTGTCACTCAGGCACCGTCGTCGCAGAGCGCGGCCTCACTGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp CCTCGCTGCAGGCTGTCCGCACAACCACATGGTCACTaGAGCACTTCTCCCACAGCAAGTTCAAGGCAGCCG +
Preference number: 6 (lower is better)
Translates to: PRCRLSAQPHGH*STSPTASSRQP
Trigger: CGGCTGCCTTGAACTTGCTGTGGGAGAAGTGCTGCAGTGACCATGTGGTTGTGCGGACAGCCTGCAGCGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp AGTGACTCTATGCATGGGACTCCTGCCAAGCAAGGCTaGTGCTGGCCCACCAGGGCCATTCTGCTGGTGCCA +
Preference number: 6 (lower is better)
Translates to: SDSMHGTPAKQG*CWPTRAILLVP
Trigger: TGGCACCAGCAGAATGGCCCTGGTGGGCCAGCAGCAGCCTTGCTTGGCAGGAGTCCCATGCATAGAGTCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS GCA 72 bp AACATAGCTGAACTCTGCATGACCCTGGGCGACAAGTaGCACCAGTCCCTCGCTGCAGGCTGTCCGCACAAC +
Preference number: 6 (lower is better)
Translates to: NIAELCMTLGDK*HQSLAAGCPHN
Trigger: GTTGTGCGGACAGCCTGCAGCGAGGGACTGGTGGCACTTGTCGCCCAGGGTCATGCAGAGTTCAGCTATGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp GAGAGGGAGGGCGCGTCAGACACGGCCATGAAACGCTaGAGTTCAGGGTACACACGATCCTGCTTTTCCCAC +
Preference number: 6 (lower is better)
Translates to: EREGASDTAMKR*SSGYTRSCFSH
Trigger: GTGGGAAAAGCAGGATCGTGTGTACCCTGAACTGCAGCGTTTCATGGCCGTGTCTGACGCGCCCTCCCTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TCTCTGACCCAGAGCCAGGCTGTGCTTCGTTTGTATTaGACCTCCTCAGGGCCTTCCTTGCCGTGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: SLTQSQAVLRLY*TSSGPSLPCCS
Trigger: GCTGCAGCACGGCAAGGAAGGCCCTGAGGAGGTGCAATACAAACGAAGCACAGCCTGGCTCTGGGTCAGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp GTCTCTGACCCAGAGCCAGGCTGTGCTTCGTTTGTATaGCACCTCCTCAGGGCCTTCCTTGCCGTGCTGCAG +
Preference number: 6 (lower is better)
Translates to: VSDPEPGCASFV*HLLRAFLAVLQ
Trigger: CTGCAGCACGGCAAGGAAGGCCCTGAGGAGGTGCAATACAAACGAAGCACAGCCTGGCTCTGGGTCAGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp TGTCAGCATGTCTCTGACCCAGAGCCAGGCTGTGCTTCGTTTGTATaGCACCTCCTCAGGGCCTTCCTTGCCGTGCTGCAGCTGCAGCTC +
Preference number: 6 (lower is better)
Translates to: CQHVSDPEPGCASFV*HLLRAFLAVLQLQL
Trigger: GAGCTGCAGCTGCAGCACGGCAAGGAAGGCCCTGAGGAGGTGCAATACAAACGAAGCACAGCCTGGCTCTGGGTCAGAGACATGCTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp TCATCTGTCAGCATGTCTCTGACCCAGAGCCAGGCTGTGCTTCGTTaGTATTGCACCTCCTCAGGGCCTTCCTTGCCGTGCTGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: SSVSMSLTQSQAVLR*YCTSSGPSLPCCSC
Trigger: GCAGCTGCAGCACGGCAAGGAAGGCCCTGAGGAGGTGCAATACAAACGAAGCACAGCCTGGCTCTGGGTCAGAGACATGCTGACAGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp GCAGTGAGGCCGCGCTCTGCGACGACGGTGCCTGAGTaGCAGCAATCTCAAGGCACAGTTGCTGTATCTCTT +
Preference number: 6 (lower is better)
Translates to: AVRPRSATTVPE*QQSQGTVAVSL
Trigger: AAGAGATACAGCAACTGTGCCTTGAGATTGCTGTCACTCAGGCACCGTCGTCGCAGAGCGCGGCCTCACTGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp GGCTGGCTTCATGCTTGGACACCACAACGGCCAGGCTaGTTAAGGCTAACAGGGCATTGGCTTTCACCACCG +
Preference number: 6 (lower is better)
Translates to: GWLHAWTPQRPG*LRLTGHWLSPP
Trigger: CGGTGGTGAAAGCCAATGCCCTGTTAGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp AGGACGCCATCGGAGTCTGAGCAAAGGCTGGCTTCATaGTTGGACACCACAACGGCCAGGCTGCTTAAGGCT +
Preference number: 6 (lower is better)
Translates to: RTPSESEQRLAS*LDTTTARLLKA
Trigger: AGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAGACTCCGATGGCGTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp GACTCCAGAGGTGGTGGGAAGGACTGGGCAGTTTCATaGCCTGGCTCAGACCCTGTAAGGCACTTAGGCACA +
Preference number: 6 (lower is better)
Translates to: DSRGGGKDWAVS*PGSDPVRHLGT
Trigger: TGTGCCTAAGTGCCTTACAGGGTCTGAGCCAGGCCATGAAACTGCCCAGTCCTTCCCACCACCTCTGGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp ATTCTCCCAGTAGCATCGCAGAGCAGACTCCAGAGGTaGTGGGAAGGACTGGGCAGTTTCATGGCCTGGCTC +
Preference number: 6 (lower is better)
Translates to: ILPVASQSRLQR*WEGLGSFMAWL
Trigger: GAGCCAGGCCATGAAACTGCCCAGTCCTTCCCACCACCTCTGGAGTCTGCTCTGCGATGCTACTGGGAGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp GGCACCAGGAGCAGCAGGGATGCCTTCGGGATTTTCTaGCCCTCAGTAAGCGAGAGGAGCTTCAAAGCTAGG +
Preference number: 6 (lower is better)
Translates to: GTRSSRDAFGIF*PSVSERSFKAR
Trigger: CCTAGCTTTGAAGCTCCTCTCGCTTACTGAGGGTCAGAAAATCCCGAAGGCATCCCTGCTGCTCCTGGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TTCTGTAGCACTTCCACAAGACTGAGAGCTAACTGCTaGCTGGAGGGGCCTTCCTCACCCATGGCCAGACAG +
Preference number: 6 (lower is better)
Translates to: FCSTSTRLRANC*LEGPSSPMARQ
Trigger: CTGTCTGGCCATGGGTGAGGAAGGCCCCTCCAGGCAGCAGTTAGCTCTCAGTCTTGTGGAAGTGCTACAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp CGCCATCGGAGTCTGAGCAAAGGCTGGCTTCATGCTTaGACACCACAACGGCCAGGCTGCTTAAGGCTAACA +
Preference number: 6 (lower is better)
Translates to: RHRSLSKGWLHA*TPQRPGCLRLT
Trigger: TGTTAGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAGACTCCGATGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp ACGCCATCGGAGTCTGAGCAAAGGCTGGCTTCATGCTaGGACACCACAACGGCCAGGCTGCTTAAGGCTAAC +
Preference number: 6 (lower is better)
Translates to: TPSESEQRLASC*DTTTARLLKAN
Trigger: GTTAGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAGACTCCGATGGCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp ATCTCTAGGACGCCATCGGAGTCTGAGCAAAGGCTGGCTTCATGCTaGGACACCACAACGGCCAGGCTGCTTAAGGCTAACAGGGCATTG +
Preference number: 6 (lower is better)
Translates to: ISRTPSESEQRLASC*DTTTARLLKANRAL
Trigger: CAATGCCCTGTTAGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCATGAAGCCAGCCTTTGCTCAGACTCCGATGGCGTCCTAGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp TTCATCTGCAAGCATGGAAGCATGCTACAGCACAGCTaGAGGGTGCTCTGCTCCCGTACTGACAGCTGCGCT +
Preference number: 6 (lower is better)
Translates to: FICKHGSMLQHS*RVLCSRTDSCA
Trigger: AGCGCAGCTGTCAGTACGGGAGCAGAGCACCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGCAGATGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp CCTGCTTTTCCCACAGAGATGTCAACAGGCGCAACGTaGCAGCTCTTAGTCGTGGAGTGGTCCCAAGCAGCT +
Preference number: 6 (lower is better)
Translates to: PAFPTEMSTGAT*QLLVVEWSQAA
Trigger: AGCTGCTTGGGACCACTCCACGACTAAGAGCTGTCACGTTGCGCCTGTTGACATCTCTGTGGGAAAAGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TCTTTCTGTAGCACTTCCACAAGACTGAGAGCTAACTaGTGCCTGGAGGGGCCTTCCTCACCCATGGCCAGA +
Preference number: 6 (lower is better)
Translates to: SFCSTSTRLRAN*CLEGPSSPMAR
Trigger: TCTGGCCATGGGTGAGGAAGGCCCCTCCAGGCAGCAGTTAGCTCTCAGTCTTGTGGAAGTGCTACAGAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TGGAGCCATACATGCTGCTTACAGGAAAAGCAAGCCTaGAGGAGATCGTGTGGCTGTCGTCTCCGTGACGCT +
Preference number: 6 (lower is better)
Translates to: WSHTCCLQEKQA*RRSCGCRLRDA
Trigger: AGCGTCACGGAGACGACAGCCACACGATCTCCTGCAGGCTTGCTTTTCCTGTAAGCAGCATGTATGGCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS GCA 72 bp TTGGCATGGTTGACGATGCGTGCCTGGTATAAGCTGTaGAGGATCATCCACGCTAGAGTCTCCTTCTCGGGG +
Preference number: 6 (lower is better)
Translates to: LAWLTMRAWYKL*RIIHARVSFSG
Trigger: CCCCGAGAAGGAGACTCTAGCGTGGATGATCCTGCACAGCTTATACCAGGCACGCATCGTCAACCATGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CCA 72 bp TGTCACAGCTCAGCTTGGGAGAGAGAGCATTCCAAGTaGAGCGGATACAGACAACCTCAGCCTGGCAGAGTG +
Preference number: 6 (lower is better)
Translates to: CHSSAWEREHSK*SGYRQPQPGRV
Trigger: CACTCTGCCAGGCTGAGGTTGTCTGTATCCGCTCCACTTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp CCACAACGGCCAGGCTGCTTAAGGCTAACAGGGCATTaGCTTTCACCACCGGACTCTCTTTTGCAGCTGTCT +
Preference number: 6 (lower is better)
Translates to: PQRPGCLRLTGH*LSPPDSLLQLS
Trigger: AGACAGCTGCAAAAGAGAGTCCGGTGGTGAAAGCCAATGCCCTGTTAGCCTTAAGCAGCCTGGCCGTTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp ACCACAACGGCCAGGCTGCTTAAGGCTAACAGGGCATaGGCTTTCACCACCGGACTCTCTTTTGCAGCTGTC +
Preference number: 6 (lower is better)
Translates to: TTTARLLKANRA*AFTTGLSFAAV
Trigger: GACAGCTGCAAAAGAGAGTCCGGTGGTGAAAGCCAATGCCCTGTTAGCCTTAAGCAGCCTGGCCGTTGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp TGCTTGGACACCACAACGGCCAGGCTGCTTAAGGCTAACAGGGCATaGGCTTTCACCACCGGACTCTCTTTTGCAGCTGTCTTGGTGATC +
Preference number: 6 (lower is better)
Translates to: CLDTTTARLLKANRA*AFTTGLSFAAVLVI
Trigger: GATCACCAAGACAGCTGCAAAAGAGAGTCCGGTGGTGAAAGCCAATGCCCTGTTAGCCTTAAGCAGCCTGGCCGTTGTGGTGTCCAAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp ACTGACAGCTGCGCTTCCTCACAGACACCTCTGGGCTaGAGTAAGACTTTGAGCAGCGACAGTCGAAGCTTG +
Preference number: 6 (lower is better)
Translates to: TDSCASSQTPLG*SKTLSSDSRSL
Trigger: CAAGCTTCGACTGTCGCTGCTCAAAGTCTTACTTCAGCCCAGAGGTGTCTGTGAGGAAGCGCAGCTGTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp GTGACAGCTCTTAGTCGTGGAGTGGTCCCAAGCAGCTaGATTACCCGCAGGATCTGCCCTACACATACCTTG +
Preference number: 6 (lower is better)
Translates to: VTALSRGVVPSS*ITRRICPTHTL
Trigger: CAAGGTATGTGTAGGGCAGATCCTGCGGGTAATTCAGCTGCTTGGGACCACTCCACGACTAAGAGCTGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp ATCCCCAACGCAAGGCCCATGTGGATTTGCACGGCCTaGGATTCATCAGCACTTGGTTTCCCAGGTAACCTG +
Preference number: 6 (lower is better)
Translates to: IPNARPMWICTA*DSSALGFPGNL
Trigger: CAGGTTACCTGGGAAACCAAGTGCTGATGAATCTCAGGCCGTGCAAATCCACATGGGCCTTGCGTTGGGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp AGGCTTGGTGCATTCATTCAACACCTGAGAAATGGCTaGGAGCATGTCTGCACCATGCTGATAGGGCCTCTG +
Preference number: 6 (lower is better)
Translates to: RLGAFIQHLRNG*EHVCTMLIGPL
Trigger: CAGAGGCCCTATCAGCATGGTGCAGACATGCTCGCAGCCATTTCTCAGGTGTTGAATGAATGCACCAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp GAAGCTTCGCCCTCTACTGGCCATCAGCCGATTCAGTaGCTTGCCATCTTTGCTCTGATACATGGCAAGATC +
Preference number: 6 (lower is better)
Translates to: EASPSTGHQPIQ*LAIFALIHGKI
Trigger: GATCTTGCCATGTATCAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATGGCCAGTAGAGGGCGAAGCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp ACCAGGAGGTATTTCTTGATATTCAGACTCAGACCGTaGATCAGTGGCGGCATCACCCACAAGCCCAGCAGT +
Preference number: 6 (lower is better)
Translates to: TRRYFLIFRLRP*ISGGITHKPSS
Trigger: ACTGCTGGGCTTGTGGGTGATGCCGCCACTGATCCACGGTCTGAGTCTGAATATCAAGAAATACCTCCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp AACACACCTGTGTTGGCATGGTTGACGATGCGTGCCTaGTATAAGCTGTGCAGGATCATCCACGCTAGAGTC +
Preference number: 6 (lower is better)
Translates to: NTPVLAWLTMRA*YKLCRIIHARV
Trigger: GACTCTAGCGTGGATGATCCTGCACAGCTTATACCAGGCACGCATCGTCAACCATGCCAACACAGGTGTGTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CCA 72 bp AGCCACTCCAATCTCTTCAACACACCTGTGTTGGCATaGTTGACGATGCGTGCCTGGTATAAGCTGTGCAGG +
Preference number: 6 (lower is better)
Translates to: SHSNLFNTPVLA*LTMRAWYKLCR
Trigger: CCTGCACAGCTTATACCAGGCACGCATCGTCAACCATGCCAACACAGGTGTGTTGAAGAGATTGGAGTGGCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CAA 72 bp AGAGAGAAACATCCCCAACGCAAGGCCCATGTGGATTaGCACGGCCTGAGATTCATCAGCACTTGGTTTCCC +
Preference number: 6 (lower is better)
Translates to: REKHPQRKAHVD*HGLRFISTWFP
Trigger: GGGAAACCAAGTGCTGATGAATCTCAGGCCGTGCAAATCCACATGGGCCTTGCGTTGGGGATGTTTCTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp ACGCAAGGCCCATGTGGATTTGCACGGCCTGAGATTCATCAGCACTaGGTTTCCCAGGTAACCTGGCAGTCAGCATGTTCAGGATTTCCT +
Preference number: 6 (lower is better)
Translates to: TQGPCGFARPEIHQH*VSQVTWQSACSGFP
Trigger: AGGAAATCCTGAACATGCTGACTGCCAGGTTACCTGGGAAACCAAGTGCTGATGAATCTCAGGCCGTGCAAATCCACATGGGCCTTGCGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp GCACCCTCTGTCAGGACAACTTTAATCCAGCTGGGGCGAAGTCTGTaGCCCAAGTCTTCAGCTTTTCCATGTCCACACACAGACAAACCA +
Preference number: 6 (lower is better)
Translates to: APSVRTTLIQLGRSL*PKSSAFPCPHTDKP
Trigger: TGGTTTGTCTGTGTGTGGACATGGAAAAGCTGAAGACTTGGGCAACAGACTTCGCCCCAGCTGGATTAAAGTTGTCCTGACAGAGGGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp CCTTGGTCTGAGCGCACGCCTCCTTTCAATGCAGAGTaGTATATCCCACGGGGCATATTCACCATCTCTTGT +
Preference number: 6 (lower is better)
Translates to: PWSERTPPFNAE*YIPRGIFTISC
Trigger: ACAAGAGATGGTGAATATGCCCCGTGGGATATATCACTCTGCATTGAAAGGAGGCGTGCGCTCAGACCAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp TTGCCCACAGAGGCATGGATACCAGGAGGTATTTCTTaGTATTCAGACTCAGACCGTGGATCAGTGGCGGCA +
Preference number: 6 (lower is better)
Translates to: LPTEAWIPGGIS*YSDSDRGSVAA
Trigger: TGCCGCCACTGATCCACGGTCTGAGTCTGAATATCAAGAAATACCTCCTGGTATCCATGCCTCTGTGGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TCTGCATCAGATCTTTCATCTGCAAGCATGGAAGCATaGTACAGCACAGCTGAAGGGTGCTCTGCTCCCGTA +
Preference number: 6 (lower is better)
Translates to: SASDLSSASMEA*YSTAEGCSAPV
Trigger: TACGGGAGCAGAGCACCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGCAGATGAAAGATCTGATGCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TTCGCCCTCTACTGGCCATCAGCCGATTCAGTGGCTTaGCATCTTTGCTCTGATACATGGCAAGATCATAGC +
Preference number: 6 (lower is better)
Translates to: FALYWPSADSVA*HLCSDTWQDHS
Trigger: GCTATGATCTTGCCATGTATCAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATGGCCAGTAGAGGGCGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp TTGGCTTTCACCACCGGACTCTCTTTTGCAGCTGTCTaGGTGATCTCATCTGTCAGCATGTCTCTGACCCAG +
Preference number: 6 (lower is better)
Translates to: LAFTTGLSFAAV*VISSVSMSLTQ
Trigger: CTGGGTCAGAGACATGCTGACAGATGAGATCACCAAGACAGCTGCAAAAGAGAGTCCGGTGGTGAAAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp CCATGTGGATTTGCACGGCCTGAGATTCATCAGCACTaGGTTTCCCAGGTAACCTGGCAGTCAGCATGTTCA +
Preference number: 6 (lower is better)
Translates to: PCGFARPEIHQH*VSQVTWQSACS
Trigger: TGAACATGCTGACTGCCAGGTTACCTGGGAAACCAAGTGCTGATGAATCTCAGGCCGTGCAAATCCACATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp TTTGCCCACAGAGGCATGGATACCAGGAGGTATTTCTaGATATTCAGACTCAGACCGTGGATCAGTGGCGGC +
Preference number: 6 (lower is better)
Translates to: FAHRGMDTRRYF*IFRLRPWISGG
Trigger: GCCGCCACTGATCCACGGTCTGAGTCTGAATATCAAGAAATACCTCCTGGTATCCATGCCTCTGTGGGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp CACTCCAATCTCTTCAACACACCTGTGTTGGCATGGTaGACGATGCGTGCCTGGTATAAGCTGTGCAGGATC +
Preference number: 6 (lower is better)
Translates to: HSNLFNTPVLAW*TMRAWYKLCRI
Trigger: GATCCTGCACAGCTTATACCAGGCACGCATCGTCAACCATGCCAACACAGGTGTGTTGAAGAGATTGGAGTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CAA 90 bp TCACTCAGGGTCTTCAATATGAGTGGTCTCATGTCACAGCTCAGCTaGGGAGAGAGAGCATTCCAAGTGGAGCGGATACAGACAACCTCA +
Preference number: 6 (lower is better)
Translates to: SLRVFNMSGLMSQLS*GERAFQVERIQTTS
Trigger: TGAGGTTGTCTGTATCCGCTCCACTTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACATGAGACCACTCATATTGAAGACCCTGAGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp GAAGTTCGGGATTCCTGCTACTGTCTTCCCTTGGTCTaGGCGCACGCCTCCTTTCAATGCAGAGTGATATAT +
Preference number: 6 (lower is better)
Translates to: EVRDSCYCLPLV*AHASFQCRVIY
Trigger: ATATATCACTCTGCATTGAAAGGAGGCGTGCGCTCAGACCAAGGGAAGACAGTAGCAGGAATCCCGAACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp AAGCCTGAGGTCTGCTGGTTGTTCTCCACCAACAGCTaGAGCTTGCTCATAATATCTTCAGCCTCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: KPEVCWLFSTNS*SLLIISSASAA
Trigger: AGCTGCAGAGGCTGAAGATATTATGAGCAAGCTTCAGCTGTTGGTGGAGAACAACCAGCAGACCTCAGGCTT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp CTGGGAAACCTGATTGACACCTTCGTCCGTCATCTCTaGGAGGCACTTTGCTATACTGATGTACAGCTCGAG +
Preference number: 6 (lower is better)
Translates to: LGNLIDTFVRHL*EALCYTDVQLE
Trigger: CTCGAGCTGTACATCAGTATAGCAAAGTGCCTCTCAGAGATGACGGACGAAGGTGTCAATCAGGTTTCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp ACTCCAATCTCTTCAACACACCTGTGTTGGCATGGTTaGCGATGCGTGCCTGGTATAAGCTGTGCAGGATCA +
Preference number: 6 (lower is better)
Translates to: TPISSTHLCWHG*RCVPGISCAGS
Trigger: TGATCCTGCACAGCTTATACCAGGCACGCATCGTCAACCATGCCAACACAGGTGTGTTGAAGAGATTGGAGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CCA 72 bp CTCAGACCCTGTAAGGCACTTAGGCACATCTCAGGATaGCACGGTTGGGAAGCTGTTTTAAAAACTTCCACC +
Preference number: 6 (lower is better)
Translates to: LRPCKALRHISG*HGWEAVLKTST
Trigger: GGTGGAAGTTTTTAAAACAGCTTCCCAACCGTGCCATCCTGAGATGTGCCTAAGTGCCTTACAGGGTCTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp GTCTTCAATATGAGTGGTCTCATGTCACAGCTCAGCTaGGGAGAGAGAGCATTCCAAGTGGAGCGGATACAG +
Preference number: 6 (lower is better)
Translates to: VFNMSGLMSQLS*GERAFQVERIQ
Trigger: CTGTATCCGCTCCACTTGGAATGCTCTCTCTCCCAAGCTGAGCTGTGACATGAGACCACTCATATTGAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp GTCAGGACAACTTTAATCCAGCTGGGGCGAAGTCTGTaGCCCAAGTCTTCAGCTTTTCCATGTCCACACACA +
Preference number: 6 (lower is better)
Translates to: VRTTLIQLGRSL*PKSSAFPCPHT
Trigger: TGTGTGTGGACATGGAAAAGCTGAAGACTTGGGCAACAGACTTCGCCCCAGCTGGATTAAAGTTGTCCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp GTACCTGAGAGGAATCTGCTTGAGCTAACTGTGTGGTaGCCCTCAGTATCTGCTGAAGATTCTGCCCTACAT +
Preference number: 6 (lower is better)
Translates to: VPERNLLELTVW*PSVSAEDSALH
Trigger: ATGTAGGGCAGAATCTTCAGCAGATACTGAGGGTCACCACACAGTTAGCTCAAGCAGATTCCTCTCAGGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097992.10
CDS GCA 72 bp CCTCTGTTTACATATATCTCTGATGGACGCAGCTTTTaGAATCAGTTTCTCCCACTGGAGCTCCTTGCCCAC +
Preference number: 6 (lower is better)
Translates to: PLFTYISDGRSF*NQFLPLELLAH
Trigger: GTGGGCAAGGAGCTCCAGTGGGAGAAACTGATTGCAAAAGCTGCGTCCATCAGAGATATATGTAAACAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp CAGCACTTCTCCCACAGCAAGTTCAAGGCAGCCGTCTaGTTTGTGGATTGGTGTATCTTTTCTGAAACACCA +
Preference number: 6 (lower is better)
Translates to: QHFSHSKFKAAV*FVDWCIFSETP
Trigger: TGGTGTTTCAGAAAAGATACACCAATCCACAAACCAGACGGCTGCCTTGAACTTGCTGTGGGAGAAGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp TTCTGTTGTCTGCATCAGATCTTTCATCTGCAAGCATaGAAGCATGCTACAGCACAGCTGAAGGGTGCTCTG +
Preference number: 6 (lower is better)
Translates to: FCCLHQIFHLQA*KHATAQLKGAL
Trigger: CAGAGCACCCTTCAGCTGTGCTGTAGCATGCTTCCATGCTTGCAGATGAAAGATCTGATGCAGACAACAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp ATGGAAACCCACTCTTTCACTGGAAGGAAATTAGGTTaGATCTCTAGGACGCCATCGGAGTCTGAGCAAAGG +
Preference number: 6 (lower is better)
Translates to: METHSFTGRKLG*ISRTPSESEQR
Trigger: CCTTTGCTCAGACTCCGATGGCGTCCTAGAGATCCAACCTAATTTCCTTCCAGTGAAAGAGTGGGTTTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp CCTGAGATTCATCAGCACTTGGTTTCCCAGGTAACCTaGCAGTCAGCATGTTCAGGATTTCCTCAACCTTCT +
Preference number: 6 (lower is better)
Translates to: PEIHQHLVSQVT*QSACSGFPQPS
Trigger: AGAAGGTTGAGGAAATCCTGAACATGCTGACTGCCAGGTTACCTGGGAAACCAAGTGCTGATGAATCTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp CAACAAAACCCTGGATCTGTTCATCAGACACGTGCTTaGCCCACAGAGGCATGGATACCAGGAGGTATTTCT +
Preference number: 6 (lower is better)
Translates to: QQNPGSVHQTRA*PTEAWIPGGIS
Trigger: AGAAATACCTCCTGGTATCCATGCCTCTGTGGGCAAAGCACGTGTCTGATGAACAGATCCAGGGTTTTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp CAAAACAGCATGCCACCTGCCAGGCCAGGTTTCAATCCTGGTTGCTaGTTTGTTTCGTATGTCTTCAATATGAAGTTCGGGATTCCTGCT +
Preference number: 6 (lower is better)
Translates to: QNSMPPARPGFNPGC*FVSYVFNMKFGIPA
Trigger: AGCAGGAATCCCGAACTTCATATTGAAGACATACGAAACAAACAAGCAACCAGGATTGAAACCTGGCCTGGCAGGTGGCATGCTGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp TGTGTTCTCGCCAGAATAGGACTTATGATAAAAGCAGGTGAAGAGTaGTCCACTGGGGTGGTAATGGCTATCCACAATGACCAGGAGAGT +
Preference number: 6 (lower is better)
Translates to: CVLARIGLMIKAGEE*STGVVMAIHNDQES
Trigger: ACTCTCCTGGTCATTGTGGATAGCCATTACCACCCCAGTGGACAACTCTTCACCTGCTTTTATCATAAGTCCTATTCTGGCGAGAACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp GAACCAAAGAGAACAGTTCACTCAGGGTCTTCAATATaGGTGGTCTCATGTCACAGCTCAGCTTGGGAGAGA +
Preference number: 6 (lower is better)
Translates to: EPKRTVHSGSSI*VVSCHSSAWER
Trigger: TCTCTCCCAAGCTGAGCTGTGACATGAGACCACTCATATTGAAGACCCTGAGTGAACTGTTCTCTTTGGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp AGTAGATCAGTCAGGCTCATCAACGGGAGTCGTCCTTaGGAGACTAAATACAACTTGACAAAGGCGGCCTTT +
Preference number: 6 (lower is better)
Translates to: SRSVRLINGSRP*ETKYNLTKAAF
Trigger: AAAGGCCGCCTTTGTCAAGTTGTATTTAGTCTCTCAAGGACGACTCCCGTTGATGAGCCTGACTGATCTACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TACTGGCCATCAGCCGATTCAGTGGCTTGCCATCTTTaGTCTGATACATGGCAAGATCATAGCAAAACAGCA +
Preference number: 6 (lower is better)
Translates to: YWPSADSVACHL*SDTWQDHSKTA
Trigger: TGCTGTTTTGCTATGATCTTGCCATGTATCAGAGCAAAGATGGCAAGCCACTGAATCGGCTGATGGCCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp AACAAAACCCTGGATCTGTTCATCAGACACGTGCTTTaGCCACAGAGGCATGGATACCAGGAGGTATTTCTT +
Preference number: 6 (lower is better)
Translates to: NKTLDLFIRHVL*PQRHGYQEVFL
Trigger: AAGAAATACCTCCTGGTATCCATGCCTCTGTGGGCAAAGCACGTGTCTGATGAACAGATCCAGGGTTTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp ATGCCACCTGCCAGGCCAGGTTTCAATCCTGGTTGCTaGTTTGTTTCGTATGTCTTCAATATGAAGTTCGGG +
Preference number: 6 (lower is better)
Translates to: MPPARPGFNPGC*FVSYVFNMKFG
Trigger: CCCGAACTTCATATTGAAGACATACGAAACAAACAAGCAACCAGGATTGAAACCTGGCCTGGCAGGTGGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp ACTCTCAGGGATAGCAGGGTGGCTTTCAAAAGGTCCTaGGACTTTGCTGCAAAGGCTTTGTTAGGAATTTCC +
Preference number: 6 (lower is better)
Translates to: TLRDSRVAFKRS*DFAAKALLGIS
Trigger: GGAAATTCCTAACAAAGCCTTTGCAGCAAAGTCCAAGGACCTTTTGAAAGCCACCCTGCTATCCCTGAGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CAA 90 bp ATAGCAAAACAGCATGCCACCTGCCAGGCCAGGTTTCAATCCTGGTaGCTTGTTTGTTTCGTATGTCTTCAATATGAAGTTCGGGATTCC +
Preference number: 6 (lower is better)
Translates to: IAKQHATCQARFQSW*LVCFVCLQYEVRDS
Trigger: GGAATCCCGAACTTCATATTGAAGACATACGAAACAAACAAGCAACCAGGATTGAAACCTGGCCTGGCAGGTGGCATGCTGTTTTGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp CACCATGCTGATAGGGCCTCTGTTTACATATATCTCTaGTGGACGCAGCTTTTGCAATCAGTTTCTCCCACT +
Preference number: 6 (lower is better)
Translates to: HHADRASVYIYL*WTQLLQSVSPT
Trigger: AGTGGGAGAAACTGATTGCAAAAGCTGCGTCCATCAGAGATATATGTAAACAGAGGCCCTATCAGCATGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp TGTTCTCGCCAGAATAGGACTTATGATAAAAGCAGGTaGAGAGTTGTCCACTGGGGTGGTAATGGCTATCCA +
Preference number: 6 (lower is better)
Translates to: CSRQNRTYDKSR*RVVHWGGNGYP
Trigger: TGGATAGCCATTACCACCCCAGTGGACAACTCTTCACCTGCTTTTATCATAAGTCCTATTCTGGCGAGAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp CTTCGTCCGTCATCTCTGAGAGGCACTTTGCTATACTaGTGTACAGCTCGAGATCATTTCTCCGAATCCTAT +
Preference number: 6 (lower is better)
Translates to: LRPSSLRGTLLY*CTARDHFSESY
Trigger: ATAGGATTCGGAGAAATGATCTCGAGCTGTACATCAGTATAGCAAAGTGCCTCTCAGAGATGACGGACGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp CAAAGCCTCTTCAGGAGCCACATTCTGTATAGGTGCTaGCTGGTAAGCAATGTTTCTCACATAACCCATCAG +
Preference number: 6 (lower is better)
Translates to: QSLFRSHILYRC*LVSNVSHITHQ
Trigger: CTGATGGGTTATGTGAGAAACATTGCTTACCAGTCAGCACCTATACAGAATGTGGCTCCTGAAGAGGCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS GCA 72 bp TTCATTCAACACCTGAGAAATGGCTGCGAGCATGTCTaGACCATGCTGATAGGGCCTCTGTTTACATATATC +
Preference number: 6 (lower is better)
Translates to: FIQHLRNGCEHV*TMLIGPLFTYI
Trigger: GATATATGTAAACAGAGGCCCTATCAGCATGGTGCAGACATGCTCGCAGCCATTTCTCAGGTGTTGAATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp AGCATGCCACCTGCCAGGCCAGGTTTCAATCCTGGTTaGTTGTTTGTTTCGTATGTCTTCAATATGAAGTTC +
Preference number: 6 (lower is better)
Translates to: SMPPARPGFNPG*LFVSYVFNMKF
Trigger: GAACTTCATATTGAAGACATACGAAACAAACAAGCAACCAGGATTGAAACCTGGCCTGGCAGGTGGCATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp AGTGAGACAGAGACTTATATGCAGCACTTGCTACAGTaGGATTCTTGTTTTGAGTGTGAGTCCAGAGGAAGC +
Preference number: 6 (lower is better)
Translates to: SETETYMQHLLQ*DSCFECESRGS
Trigger: GCTTCCTCTGGACTCACACTCAAAACAAGAATCCCACTGTAGCAAGTGCTGCATATAAGTCTCTGTCTCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp TGTAAGGCACTTAGGCACATCTCAGGATGGCACGGTTaGGAAGCTGTTTTAAAAACTTCCACCATCAGGTTT +
Preference number: 6 (lower is better)
Translates to: CKALRHISGWHG*EAVLKTSTIRF
Trigger: AAACCTGATGGTGGAAGTTTTTAAAACAGCTTCCCAACCGTGCCATCCTGAGATGTGCCTAAGTGCCTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp TCTTCCCAATTTGAACATCAAAACTGGAATCAGATTTaGTACCGTGTGGCTGTCGTCTCCGTGACGCTCTTT +
Preference number: 6 (lower is better)
Translates to: SSQFEHQNWNQI*YRVAVVSVTLF
Trigger: AAAGAGCGTCACGGAGACGACAGCCACACGGTACCAAATCTGATTCCAGTTTTGATGTTCAAATTGGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159342.8
CDS CAA 72 bp GCCAGAATAGGACTTATGATAAAAGCAGGTGAAGAGTaGTCCACTGGGGTGGTAATGGCTATCCACAATGAC +
Preference number: 6 (lower is better)
Translates to: ARIGLMIKAGEE*STGVVMAIHND
Trigger: GTCATTGTGGATAGCCATTACCACCCCAGTGGACAACTCTTCACCTGCTTTTATCATAAGTCCTATTCTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp GGCATCCAAGGACTTCATCAGAAGAAGGTTCATCTGTaGTCCAGACATGTCACTGAGCTTCTCTTCACACAA +
Preference number: 6 (lower is better)
Translates to: GIQGLHQKKVHL*SRHVTELLFTQ
Trigger: TTGTGTGAAGAGAAGCTCAGTGACATGTCTGGACAACAGATGAACCTTCTTCTGATGAAGTCCTTGGATGCC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 90 bp AGCAGGGTGGCTTTCAAAAGGTCCTTGGACTTTGCTGCAAAGGCTTaGTTAGGAATTTCCATGATGCTCAATAGCCAGTCAATGAACTTC +
Preference number: 6 (lower is better)
Translates to: SRVAFKRSLDFAAKA*LGISMMLNSQSMNF
Trigger: GAAGTTCATTGACTGGCTATTGAGCATCATGGAAATTCCTAACAAAGCCTTTGCAGCAAAGTCCAAGGACCTTTTGAAAGCCACCCTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS GCA 72 bp AGCACTGAAGTGAGACAGAGACTTATATGCAGCACTTaGTACAGTGGGATTCTTGTTTTGAGTGTGAGTCCA +
Preference number: 6 (lower is better)
Translates to: STEVRQRLICST*YSGILVLSVSP
Trigger: TGGACTCACACTCAAAACAAGAATCCCACTGTAGCAAGTGCTGCATATAAGTCTCTGTCTCACTTCAGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CCA 72 bp GATGTACAGCTCGAGATCATTTCTCCGAATCCTATTTaGCAGAAGGTCAAAAATTCTCCCAGTAGCATCGCA +
Preference number: 6 (lower is better)
Translates to: DVQLEIISPNPI*QKVKNSPSSIA
Trigger: TGCGATGCTACTGGGAGAATTTTTGACCTTCTGCCAAATAGGATTCGGAGAAATGATCTCGAGCTGTACATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS GCA 72 bp TATACTTCCTCGACGAACAGCATCATTTCTGTTGTCTaGATCAGATCTTTCATCTGCAAGCATGGAAGCATG +
Preference number: 6 (lower is better)
Translates to: YTSSTNSIISVV*IRSFICKHGSM
Trigger: CATGCTTCCATGCTTGCAGATGAAAGATCTGATGCAGACAACAGAAATGATGCTGTTCGTCGAGGAAGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp GCTTTCAAAAGGTCCTTGGACTTTGCTGCAAAGGCTTaGTTAGGAATTTCCATGATGCTCAATAGCCAGTCA +
Preference number: 6 (lower is better)
Translates to: AFKRSLDFAAKA*LGISMMLNSQS
Trigger: TGACTGGCTATTGAGCATCATGGAAATTCCTAACAAAGCCTTTGCAGCAAAGTCCAAGGACCTTTTGAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097992.10
ENSMUST00000107147.2
ENSMUST00000159342.8
CDS CAA 72 bp AGAGTGATATATCCCACGGGGCATATTCACCATCTCTaGTCTCACAAGAGATGTAAAGAATTCTTCCAATGC +
Preference number: 6 (lower is better)
Translates to: RVIYPTGHIHHL*SHKRCKEFFQC
Trigger: GCATTGGAAGAATTCTTTACATCTCTTGTGAGACAAGAGATGGTGAATATGCCCCGTGGGATATATCACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS TCA 72 bp AGGAGCTTCAAAGCTAGGTTTAATAGTGGCTTCTGTTaGCTTGCTGGCATCTGTAGAAGTAGTAAAGCAATT +
Preference number: 6 (lower is better)
Translates to: RSFKARFNSGFC*LAGICRSSKAI
Trigger: AATTGCTTTACTACTTCTACAGATGCCAGCAAGTCAACAGAAGCCACTATTAAACCTAGCTTTGAAGCTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8
CDS CAA 72 bp GCTTCAAAGCTAGGTTTAATAGTGGCTTCTGTTGACTaGCTGGCATCTGTAGAAGTAGTAAAGCAATTCCAA +
Preference number: 6 (lower is better)
Translates to: ASKLGLIVASVD*LASVEVVKQFQ
Trigger: TTGGAATTGCTTTACTACTTCTACAGATGCCAGCAAGTCAACAGAAGCCACTATTAAACCTAGCTTTGAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000097992.10
ENSMUST00000159342.8