Pregenerated sensors for FNTA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015994Ensembl transcript IDs: ENSMUST00000016138.11
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCAACAGGCGCAGTTGCCGCATAATGCACCGAGATTCAGGTTACTaGAAATCAATCGTCACTCCCAGCGCACAGCCTTGCATACACATC | + |
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Preference number: 1 (lower is better) Translates to: TNRRSCRIMHRDSGY*KSIVTPSAQPCIHI Trigger: GATGTGTATGCAAGGCTGTGCGCTGGGAGTGACGATTGATTTGCAGTAACCTGAATCTCGGTGCATTATGCGGCAACTGCGCCTGTTGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR CCA 90 bp | CCTCTATATTCTGAACTGGCCCAAACCTCTCTATGTAGTCCAGACTaGCTCAAACTTGCAGCAATCCTCCTGTCTCAGCCTCCCAAGCAC | + |
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Preference number: 1 (lower is better) Translates to: PLYSELAQTSLCSPD*LKLAAILLSQPPKH Trigger: GTGCTTGGGAGGCTGAGACAGGAGGATTGCTGCAAGTTTGAGCCAGTCTGGACTACATAGAGAGGTTTGGGCCAGTTCAGAATATAGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR CAA 90 bp | CTGAACTGGCCCAAACCTCTCTATGTAGTCCAGACTGGCTCAAACTaGCAGCAATCCTCCTGTCTCAGCCTCCCAAGCACTGGGCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: LNWPKPLYVVQTGSN*QQSSCLSLPSTGLL Trigger: AAGAAGCCCAGTGCTTGGGAGGCTGAGACAGGAGGATTGCTGCAAGTTTGAGCCAGTCTGGACTACATAGAGAGGTTTGGGCCAGTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR-3UTR GCA 90 bp | GCCTCCCAAGCACTGGGCTTCTTGTTTGTCCCTTATATACTGTTAAACATCAAACCCAGCGCACAGCCTTaGATACACATCTTTCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: ASQALGFLFVPYILLNIKPSAQP*IHIFQE Trigger: CTCCTGAAAGATGTGTATGCAAGGCTGTGCGCTGGG...TTTGATGTTTAACAGTATATAAGGGACAAACAAGAAGCCCAGTGCTTGGGAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR-3UTR CCA 90 bp | CCTCCTGTCTCAGCCTCCCAAGCACTGGGCTTCTTGTTTGTCCCTTATATACTGGACTGGACTAAATGTTaGGAAGACTACAAAAGCAGT | + |
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Preference number: 2 (lower is better) Translates to: PPVSASQALGFLFVPYILDWTKC*EDYKSS Trigger: ACTGCTTTTGTAGTCTTCCCAACATTTAGTCCAGTC...CAGTATATAAGGGACAAACAAGAAGCCCAGTGCTTGGGAGGCTGAGACAGGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR-3UTR CCA 90 bp | GCCTCCCAAGCACTGGGCTTCTTGTTTGTCCCTTATATACTGTTAAACATCAAAGTTAAAAGCAGCACCTaGACAGCTTTAGCGCACAGG | + |
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Preference number: 2 (lower is better) Translates to: ASQALGFLFVPYILLNIKVKSST*TALAHR Trigger: CCTGTGCGCTAAAGCTGTCCAGGTGCTGCTTTTAAC...TTTGATGTTTAACAGTATATAAGGGACAAACAAGAAGCCCAGTGCTTGGGAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR CAA 90 bp | ACTTGCAGCAATCCTCCTGTCTCAGCCTCCCAAGCACTGGGCTTCTaGTTTGTCCCTTATATACTGTTAAACATCAAACACTATGGAATT | + |
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Preference number: 2 (lower is better) Translates to: TCSNPPVSASQALGF*FVPYILLNIKHYGI Trigger: AATTCCATAGTGTTTGATGTTTAACAGTATATAAGGGACAAACAAGAAGCCCAGTGCTTGGGAGGCTGAGACAGGAGGATTGCTGCAAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR GCA 72 bp | CGCAGTTGCCGCATAATGCACCGAGATTCAGGTTACTaGAAATCAATCGTCACTCCCAGCGCACAGCCTTGC | + |
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Preference number: 3 (lower is better) Translates to: RSCRIMHRDSGY*KSIVTPSAQPC Trigger: GCAAGGCTGTGCGCTGGGAGTGACGATTGATTTGCAGTAACCTGAATCTCGGTGCATTATGCGGCAACTGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR CCA 72 bp | CAGGAGTCATACTTAGTTCTTGTTAAAAGCAGCACCTaGACAGCTTTAGCGCACAGGCAAGAGATGACCGCT | + |
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Preference number: 3 (lower is better) Translates to: QESYLVLVKSST*TALAHRQEMTA Trigger: AGCGGTCATCTCTTGCCTGTGCGCTAAAGCTGTCCAGGTGCTGCTTTTAACAAGAACTAAGTATGACTCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR GCA 90 bp | CCTCCTGTCTCAGCCTCCCAAGCACTGGGCTTCTTGTTTGTCCCTTATATACTGGCCATCTCTTCTTCCTaGGGCTGCTGTGCTGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: PPVSASQALGFLFVPYILAISSS*GCCAGG Trigger: GCCGCCAGCACAGCAGCCGCAGGAAGAAGAGATGGC...CAGTATATAAGGGACAAACAAGAAGCCCAGTGCTTGGGAGGCTGAGACAGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR CAA 72 bp | GTGAGTGCGCACAGCAGCTCTAACCAACAGGCGCAGTaGCCGCATAATGCACCGAGATTCAGGTTACTGCAA | + |
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Preference number: 4 (lower is better) Translates to: VSAHSSSNQQAQ*PHNAPRFRLLQ Trigger: TTGCAGTAACCTGAATCTCGGTGCATTATGCGGCAACTGCGCCTGTTGGTTAGAGCTGCTGTGCGCACTCAC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR CAA 72 bp | CCCAAACCTCTCTATGTAGTCCAGACTGGCTCAAACTaGCAGCAATCCTCCTGTCTCAGCCTCCCAAGCACT | + |
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Preference number: 4 (lower is better) Translates to: PKPLYVVQTGSN*QQSSCLSLPST Trigger: AGTGCTTGGGAGGCTGAGACAGGAGGATTGCTGCAAGTTTGAGCCAGTCTGGACTACATAGAGAGGTTTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR TCA 90 bp | TCCTGCATAAGAGGCCTTAGAAAGCATCGTCCACTTCTTCCGGATGCCCTCGCTCAAAGTCGGAATTCCTaGATGACCCACTGTCGATGC | + |
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Preference number: 4 (lower is better) Translates to: SCIRGLRKHRPLLPDALAQSRNS*MTHCRC Trigger: GCATCGACAGTGGGTCATTCAGGAATTCCGACTTTG...AGCGAGGGCATCCGGAAGAAGTGGACGATGCTTTCTAAGGCCTCTTATGCAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR CCA 90 bp | ACAGCAGCTCTAACCAACAGGCGCAGTTGCCGCATAATGCACCGAGATTCAGGTTTAGGGCCGTCATTCTaGGGCACTGGGTCTATATCA | + |
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Preference number: 4 (lower is better) Translates to: TAALTNRRSCRIMHRDSGLGPSF*GTGSIS Trigger: TGATATAGACCCAGTGCCCCAGAATGACGGCCCTAA...ACCTGAATCTCGGTGCATTATGCGGCAACTGCGCCTGTTGGTTAGAGCTGCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR GCA 90 bp | AGCACCTGGACAGCTTTAGCGCACAGGCAAGAGATGACCGCTCTAACCACTCTAGTATGTCACTTTCTCTaGAGTGTTTACTCTGAAGGG | + |
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Preference number: 4 (lower is better) Translates to: STWTALAHRQEMTALTTLVCHFL*SVYSEG Trigger: CCCTTCAGAGTAAACACTGCAGAGAAAGTGACATAC...TAGAGTGGTTAGAGCGGTCATCTCTTGCCTGTGCGCTAAAGCTGTCCAGGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR CCA 90 bp | AGCACCTGGACAGCTTTAGCGCACAGGCAAGAGATGACCGCTCTAACCACTCTAATTTCCAGAGTATACTaGACTTCTCGCTCTAACACC | + |
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Preference number: 4 (lower is better) Translates to: STWTALAHRQEMTALTTLISRVY*TSRSNT Trigger: GGTGTTAGAGCGAGAAGTCCAGTATACTCTGGAAAT...TAGAGTGGTTAGAGCGGTCATCTCTTGCCTGTGCGCTAAAGCTGTCCAGGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR TCA 90 bp | TCCTGCATAAGAGGCCTTAGAAAGCATCGTCCACTTCTTCCGGATGCCCTCGCTATGAATTCAAGCTCTTaGGAAGGATCTTTCAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SCIRGLRKHRPLLPDALAMNSSS*EGSFSH Trigger: ATGGCTGAAAGATCCTTCTCAAGAGCTTGAATTCAT...AGCGAGGGCATCCGGAAGAAGTGGACGATGCTTTCTAAGGCCTCTTATGCAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR CCA 90 bp | ACAGCAGCTCTAACCAACAGGCGCAGTTGCCGCATAATGCACCGAGATTCAGGTATGACGAAGTGTCTTTaGTTCCACACAGAGTTATTC | + |
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Preference number: 4 (lower is better) Translates to: TAALTNRRSCRIMHRDSGMTKCL*FHTELF Trigger: GAATAACTCTGTGTGGAACCAAAGACACTTCGTCAT...ACCTGAATCTCGGTGCATTATGCGGCAACTGCGCCTGTTGGTTAGAGCTGCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR CCA 90 bp | AGCACCTGGACAGCTTTAGCGCACAGGCAAGAGATGACCGCTCTAACCACTCTAAAACTTGATAGTTTTTaGGCTGCTCCTCAATTATCG | + |
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Preference number: 4 (lower is better) Translates to: STWTALAHRQEMTALTTLKLDSF*AAPQLS Trigger: CGATAATTGAGGAGCAGCCCAAAAACTATCAAGTTT...TAGAGTGGTTAGAGCGGTCATCTCTTGCCTGTGCGCTAAAGCTGTCCAGGTGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| 3UTR CAA 72 bp | AATCCTCCTGTCTCAGCCTCCCAAGCACTGGGCTTCTaGTTTGTCCCTTATATACTGTTAAACATCAAACAC | + |
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Preference number: 4 (lower is better) Translates to: NPPVSASQALGF*FVPYILLNIKH Trigger: GTGTTTGATGTTTAACAGTATATAAGGGACAAACAAGAAGCCCAGTGCTTGGGAGGCTGAGACAGGAGGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR TCA 90 bp | GCCTCCCAAGCACTGGGCTTCTTGTTTGTCCCTTATATACTGTTAAACATCAAATCTTGTAGATCCTTTTaGAGCGACCTTAAGAGAACT | + |
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Preference number: 4 (lower is better) Translates to: ASQALGFLFVPYILLNIKSCRSF*SDLKRT Trigger: AGTTCTCTTAAGGTCGCTTCAAAAGGATCTACAAGA...TTTGATGTTTAACAGTATATAAGGGACAAACAAGAAGCCCAGTGCTTGGGAGGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR CAA 90 bp | ACAGCAGCTCTAACCAACAGGCGCAGTTGCCGCATAATGCACCGAGATTCAGGTAATGAATTCAAGCTCTaGAGAAGGATCTTTCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: TAALTNRRSCRIMHRDSGNEFKL*RRIFQP Trigger: TGGCTGAAAGATCCTTCTCAAGAGCTTGAATTCATT...ACCTGAATCTCGGTGCATTATGCGGCAACTGCGCCTGTTGGTTAGAGCTGCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS-3UTR CAA 90 bp | TCCTGCATAAGAGGCCTTAGAAAGCATCGTCCACTTCTTCCGGATGCCCTCGCTTTATGCGGCACTAACTaGATCATTTCCAGAGTATAC | + |
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Preference number: 5 (lower is better) Translates to: SCIRGLRKHRPLLPDALALCGTN*IISRVY Trigger: GTATACTCTGGAAATGATCAAGTTAGTGCCGCATAA...AGCGAGGGCATCCGGAAGAAGTGGACGATGCTTTCTAAGGCCTCTTATGCAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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| CDS GCA 72 bp | GGCCTCAGCCGCCATCTCTTCTTCCTGCGGCTGCTGTaGTGGCGGCGGCGGAGGCGGGGGCGGCGGCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: GLSRHLFFLRLL*WRRRRRGRRLL Trigger: GAGCAGCCGCCGCCCCCGCCTCCGCCGCCGCCAGCACAGCAGCCGCAGGAAGAAGAGATGGCGGCTGAGGCC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000016138.11 |
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