Pregenerated sensors for FNDC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048721Ensembl transcript IDs: ENSMUST00000060185.3
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTAGCACTCGCCTGTCCTAGCACTGAGGGTCTGAGGCAGCAGGACTaGTCTGAGTTCAAGGACAGTCTGGTCTACGTGGCAAGTTCCAGT | + |
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Preference number: 1 (lower is better) Translates to: VALACPSTEGLRQQD*SEFKDSLVYVASSS Trigger: ACTGGAACTTGCCACGTAGACCAGACTGTCCTTGAACTCAGAGCAGTCCTGCTGCCTCAGACCCTCAGTGCTAGGACAGGCGAGTGCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR TCA 90 bp | ATAAGCCGAGATGACTATGGTGGAGTGAGAGCTTTAGAAGTGTGGTaGACCCCAGAGAGGCTCTGGCTGGGGCACCTACTGTGTAGGAGG | + |
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Preference number: 1 (lower is better) Translates to: ISRDDYGGVRALEVW*TPERLWLGHLLCRR Trigger: CCTCCTACACAGTAGGTGCCCCAGCCAGAGCCTCTCTGGGGTTCACCACACTTCTAAAGCTCTCACTCCACCATAGTCATCTCGGCTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR CCA 90 bp | GTTTCCTCACATGTGCACATCTTCATTCCAAGTGATTGTCGCCACTaGGTCCATTCTAATTCCTCGGTCCTTCTGCCCATTCACTCAATG | + |
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Preference number: 1 (lower is better) Translates to: VSSHVHIFIPSDCRH*VHSNSSVLLPIHSM Trigger: CATTGAGTGAATGGGCAGAAGGACCGAGGAATTAGAATGGACCCAGTGGCGACAATCACTTGGAATGAAGATGTGCACATGTGAGGAAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR TCA 90 bp | GTTGTCCAACTTGGGGACCGTTGTCATGTGACATCTATACAGCACTaGCATGTGAGAGGACAGAAGTGGGAGGTCTATAGACAAATTTTC | + |
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Preference number: 1 (lower is better) Translates to: VVQLGDRCHVTSIQH*HVRGQKWEVYRQIF Trigger: GAAAATTTGTCTATAGACCTCCCACTTCTGTCCTCTCACATGTCAGTGCTGTATAGATGTCACATGACAACGGTCCCCAAGTTGGACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR TCA 90 bp | CCAGTTTCTTCCATTTCTTGGTTGATTTATCATAACATCATCAGGTaGTTCTGGGATTCTGGGCTCTGTAAGTTCCAGAGCTTTACAGAC | + |
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Preference number: 1 (lower is better) Translates to: PVSSISWLIYHNIIR*FWDSGLCKFQSFTD Trigger: GTCTGTAAAGCTCTGGAACTTACAGAGCCCAGAATCCCAGAATCACCTGATGATGTTATGATAAATCAACCAAGAAATGGAAGAAACTGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR CCA 90 bp | CGTCATTTCAAGAGGCTTAGAGACATGGGTCACAAACTAAAAATCTaGTTTCCCTTCCCAGTTCTCTTTCAAACCTTAGCTTACATAAAA | + |
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Preference number: 1 (lower is better) Translates to: RHFKRLRDMGHKLKI*FPFPVLFQTLAYIK Trigger: TTTTATGTAAGCTAAGGTTTGAAAGAGAACTGGGAAGGGAAACCAGATTTTTAGTTTGTGACCCATGTCTCTAAGCCTCTTGAAATGACG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR-3UTR CCA 90 bp | GGTGTCCATCGGGAATGGAGACATGACGTACACCCACCCACACCCTCATTTCCAGTGAGAGGACAGAAGTaGGAGGTCTATAGACAAATT | + |
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Preference number: 2 (lower is better) Translates to: GVHREWRHDVHPPTPSFPVRGQK*EVYRQI Trigger: AATTTGTCTATAGACCTCCCACTTCTGTCCTCTCAC...TGGAAATGAGGGTGTGGGTGGGTGTACGTCATGTCTCCATTCCCGATGGACACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR-3UTR TCA 90 bp | AGTCTCATTTCTTCCAAGTACTGTGCCAGATTCAGGTCTAGCTACTTTCACTGTTACAGCACTGACATGTaGGAGGACAGAAGTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: SLISSKYCARFRSSYFHCYSTDM*EDRSGR Trigger: CCTCCCACTTCTGTCCTCTCACATGTCAGTGCTGTA...ACAGTGAAAGTAGCTAGACCTGAATCTGGCACAGTACTTGGAAGAAATGAGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR-3UTR CCA 90 bp | AAGAGGCTTAGAGACATGGGTCACAAACTAAAAATCTGGTTTCCCTTCCCAGTTGAGCAATTTAAGCTTTaGAAAACGGGGCATCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: KRLRDMGHKLKIWFPFPVEQFKL*KTGHLL Trigger: AAGGAGATGCCCCGTTTTCCAAAGCTTAAATTGCTC...AACTGGGAAGGGAAACCAGATTTTTAGTTTGTGACCCATGTCTCTAAGCCTCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR-3UTR TCA 90 bp | CCCTTCCCAGTTCTCTTTCAAACCTTAGCTTACATAAAAGAAAGACATTTGTATCCAAATAGACAATACTaGAACAATGCCTTGTTTGCC | + |
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Preference number: 2 (lower is better) Translates to: PFPVLFQTLAYIKERHLYPNRQY*NNALFA Trigger: GGCAAACAAGGCATTGTTTCAGTATTGTCTATTTGG...ATACAAATGTCTTTCTTTTATGTAAGCTAAGGTTTGAAAGAGAACTGGGAAGGG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR TCA 72 bp | GTTGTCCATGCTCGGTGTCCATCGGGAATGGAGACATaGCGTACACCCACCCACACCCTCATTTCCACAGTT | + |
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Preference number: 3 (lower is better) Translates to: VVHARCPSGMET*RTPTHTLISTV Trigger: AACTGTGGAAATGAGGGTGTGGGTGGGTGTACGTCATGTCTCCATTCCCGATGGACACCGAGCATGGACAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR CCA 72 bp | AAAACAAAGGAAGGAGGGGAGGGAGGGAGGGAGGAGTaGAGATGTCTTGCAGACGTCATTTCAAGAGGCTTA | + |
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Preference number: 3 (lower is better) Translates to: KTKEGGEGGREE*RCLADVISRGL Trigger: TAAGCCTCTTGAAATGACGTCTGCAAGACATCTCCACTCCTCCCTCCCTCCCTCCCCTCCTTCCTTTGTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR CCA 72 bp | AGGACTGCTCTGAGTTCAAGGACAGTCTGGTCTACGTaGCAAGTTCCAGTTAGCCAAGACTGTTATGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: RTALSSRTVWST*QVPVSQDCYGR Trigger: TCTCCCATAACAGTCTTGGCTAACTGGAACTTGCCACGTAGACCAGACTGTCCTTGAACTCAGAGCAGTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR-3UTR CAA 90 bp | GGTGTCCATCGGGAATGGAGACATGACGTACACCCACCCACACCCTCATTTCCAAAAACCCAGCCACCTTaGATCCCATTTTTAAACTCA | + |
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Preference number: 3 (lower is better) Translates to: GVHREWRHDVHPPTPSFPKTQPP*IPFLNS Trigger: TGAGTTTAAAAATGGGATCAAAGGTGGCTGGGTTTT...TGGAAATGAGGGTGTGGGTGGGTGTACGTCATGTCTCCATTCCCGATGGACACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR TCA 72 bp | CTTGGGGACCGTTGTCATGTGACATCTATACAGCACTaGCATGTGAGAGGACAGAAGTGGGAGGTCTATAGA | + |
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Preference number: 3 (lower is better) Translates to: LGDRCHVTSIQH*HVRGQKWEVYR Trigger: TCTATAGACCTCCCACTTCTGTCCTCTCACATGTCAGTGCTGTATAGATGTCACATGACAACGGTCCCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR GCA 72 bp | GTCGCCACTGGGTCCATTCTAATTCCTCGGTCCTTCTaGCCATTCACTCAATGGCATTTCTTATATACCCCT | + |
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Preference number: 3 (lower is better) Translates to: VATGSILIPRSF*PFTQWHFLYTP Trigger: AGGGGTATATAAGAAATGCCATTGAGTGAATGGGCAGAAGGACCGAGGAATTAGAATGGACCCAGTGGCGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR CCA 72 bp | CATGTGCACATCTTCATTCCAAGTGATTGTCGCCACTaGGTCCATTCTAATTCCTCGGTCCTTCTGCCCATT | + |
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Preference number: 3 (lower is better) Translates to: HVHIFIPSDCRH*VHSNSSVLLPI Trigger: AATGGGCAGAAGGACCGAGGAATTAGAATGGACCCAGTGGCGACAATCACTTGGAATGAAGATGTGCACATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR TCA 90 bp | GTGAGTAATGTGCTGAGGTGGGTGGGTAACTGGGGACATGGGGAGTCTCCTTGTGCAGGGCTCCGAGGGTaGCCAGGAGATGATGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: VSNVLRWVGNWGHGESPCAGLRG*PGDDGS Trigger: GGAGCCATCATCTCCTGGTCACCCTCGGAGCCCTGC...ACAAGGAGACTCCCCATGTCCCCAGTTACCCACCCACCTCAGCACATTACTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR TCA 90 bp | GTGAGTAATGTGCTGAGGTGGGTGGGTAACTGGGGACATGGGGAGTCTCCTTGTAGGCCAGCACAGCAGTaGAGCAGGCCAGCAGGATGG | + |
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Preference number: 4 (lower is better) Translates to: VSNVLRWVGNWGHGESPCRPAQQ*SRPAGW Trigger: CCATCCTGCTGGCCTGCTTCACTGCTGTGCTGGCCT...ACAAGGAGACTCCCCATGTCCCCAGTTACCCACCCACCTCAGCACATTACTCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | GTGAGTAATGTGCTGAGGTGGGTGGGTAACTGGGGACATGGGGAGTCTCCTTGTCCTCTGGTTCAGCTTTaGCCCTGGCCCCTGAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: VSNVLRWVGNWGHGESPCPLVQL*PWPLSS Trigger: AGAACTCAGGGGCCAGGGCCAAAGCTGAACCAGAGG...ACAAGGAGACTCCCCATGTCCCCAGTTACCCACCCACCTCAGCACATTACTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | GTGAGTAATGTGCTGAGGTGGGTGGGTAACTGGGGACATGGGGAGTCTCCTTGTAGAGGAAGTAGAGAGTaGAAGGAGCGAGGTGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: VSNVLRWVGNWGHGESPCRGSRE*KERGVP Trigger: TGGAACACCTCGCTCCTTCCACTCTCTACTTCCTCT...ACAAGGAGACTCCCCATGTCCCCAGTTACCCACCCACCTCAGCACATTACTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | GGACCGTTGTCATGTGACATCTATACAGCACTGACATGTGAGAGGACAGAAGTGCCTCTGACCAAGAGCTaGGGTCTCCTCGGGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: GPLSCDIYTALTCERTEVPLTKS*GLLGPS Trigger: AGATGGCCCGAGGAGACCCCAGCTCTTGGTCAGAGG...CACTTCTGTCCTCTCACATGTCAGTGCTGTATAGATGTCACATGACAACGGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | TTTCTTCCAAGTACTGTGCCAGATTCAGGTCTAGCTACTTTCACTGTCCATCACCGGAGGCACCAGAACTaGAGGCAGATGAAGGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: FLPSTVPDSGLATFTVHHRRHQN*RQMKAS Trigger: GCTGGCCTTCATCTGCCTCCAGTTCTGGTGCCTCCG...GTGATGGACAGTGAAAGTAGCTAGACCTGAATCTGGCACAGTACTTGGAAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | CGTACACCCACCCACACCCTCATTTCCACAGTTGTGGAGGGAATAGTTTCCAACATCTTACCAACCCATTaGCTTCCTCCATTTGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: RTPTHTLISTVVEGIVSNILPTH*LPPFGR Trigger: CCGGCCAAATGGAGGAAGCCAATGGGTTGGTAAGAT...GTTGGAAACTATTCCCTCCACAACTGTGGAAATGAGGGTGTGGGTGGGTGTACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR TCA 90 bp | TTTCTTCCAAGTACTGTGCCAGATTCAGGTCTAGCTACTTTCACTGTCCATCACTTTGGCCCTGGCCCCTaGGTTCTTTCGTGGCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: FLPSTVPDSGLATFTVHHFGPGP*VLSWQF Trigger: GAACTGCCACGAAAGAACTCAGGGGCCAGGGCCAAA...GTGATGGACAGTGAAAGTAGCTAGACCTGAATCTGGCACAGTACTTGGAAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR TCA 90 bp | ATGTGCACATCTTCATTCCAAGTGATTGTCGCCACTGGGTCCATTCTAATTCCTAGGGTGACCAGGAGATaGTGGCTCCTGTGTGAGACA | + |
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Preference number: 4 (lower is better) Translates to: MCTSSFQVIVATGSILIPRVTRR*WLLCET Trigger: TGTCTCACACAGGAGCCATCATCTCCTGGTCACCCT...AGGAATTAGAATGGACCCAGTGGCGACAATCACTTGGAATGAAGATGTGCACAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | AAGAGGCTTAGAGACATGGGTCACAAACTAAAAATCTGGTTTCCCTTCCCAGTTGATGGCTTCAGCCTCTaGTTCAGCTTTGGCCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: KRLRDMGHKLKIWFPFPVDGFSL*FSFGPG Trigger: GCCAGGGCCAAAGCTGAACCAGAGGCTGAAGCCATC...AACTGGGAAGGGAAACCAGATTTTTAGTTTGTGACCCATGTCTCTAAGCCTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR TCA 90 bp | ATGTGCACATCTTCATTCCAAGTGATTGTCGCCACTGGGTCCATTCTAATTCCTATGATGGCTCCTGTGTaGGACACGTTCCCAACCTCA | + |
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Preference number: 4 (lower is better) Translates to: MCTSSFQVIVATGSILIPMMAPV*DTFPTS Trigger: TGAGGTTGGGAACGTGTCTCACACAGGAGCCATCAT...AGGAATTAGAATGGACCCAGTGGCGACAATCACTTGGAATGAAGATGTGCACAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR TCA 90 bp | TTTCTTCCAAGTACTGTGCCAGATTCAGGTCTAGCTACTTTCACTGTCCATCACCAGCCTTCTTGCAGCTaGTACAGAGGAAGTAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: FLPSTVPDSGLATFTVHHQPSCS*YRGSRE Trigger: CTCTCTACTTCCTCTGTATCAGCTGCAAGAAGGCTG...GTGATGGACAGTGAAAGTAGCTAGACCTGAATCTGGCACAGTACTTGGAAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR TCA 90 bp | CTAGAACTATTTCTGAGAGGAAGGTCTCCTCTACCTCATGTGACTTATTTTGTTAGGTCTTCTTCCCTCTaGCCAAGAGCTGGGGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LELFLRGRSPLPHVTYFVRSSSL*PRAGVS Trigger: GGAGACCCCAGCTCTTGGTCAGAGGGAAGAAGACCT...AACAAAATAAGTCACATGAGGTAGAGGAGACCTTCCTCTCAGAAATAGTTCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| 3UTR CAA 72 bp | GGCCTCCAAATAGACAATACTGAAACAATGCCTTGTTaGCCCCTGATGTACCTTGAGGGTCTGTGTTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: GLQIDNTETMPC*PLMYLEGLCCP Trigger: TGGACAACACAGACCCTCAAGGTACATCAGGGGCAAACAAGGCATTGTTTCAGTATTGTCTATTTGGAGGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR GCA 90 bp | GGGAGGTCTATAGACAAATTTTCACAAATAGGACCAACTATGGAGAGCAATTTAAGCGAGGTGTTCCAATaGCACAGAGGTGATGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: GRSIDKFSQIGPTMESNLSEVFQ*HRGDGS Trigger: CGAACCATCACCTCTGTGGCATTGGAACACCTCGCT...TAAATTGCTCTCCATAGTTGGTCCTATTTGTGAAAATTTGTCTATAGACCTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | CCCTTCCCAGTTCTCTTTCAAACCTTAGCTTACATAAAAGAAAGACATTTGTATGTTCAGCTTTGGCCCTaGCCCCTGAGTTCTTTCGTG | + |
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Preference number: 4 (lower is better) Translates to: PFPVLFQTLAYIKERHLYVQLWP*PLSSFV Trigger: CACGAAAGAACTCAGGGGCCAGGGCCAAAGCTGAAC...ATACAAATGTCTTTCTTTTATGTAAGCTAAGGTTTGAAAGAGAACTGGGAAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | GGGAGGTCTATAGACAAATTTTCACAAATAGGACCAACTATGGAGAGCAATTTACCAGGGTGTGGAACATaGTACAGTAGTGACTATACG | + |
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Preference number: 4 (lower is better) Translates to: GRSIDKFSQIGPTMESNLPGCGT*YSSDYT Trigger: CGTATAGTCACTACTGTACCATGTTCCACACCCTGG...TAAATTGCTCTCCATAGTTGGTCCTATTTGTGAAAATTTGTCTATAGACCTCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CCA 90 bp | CTAGAACTATTTCTGAGAGGAAGGTCTCCTCTACCTCATGTGACTTATTTTGTTTATAGTGAGGCAGTATaGCCGGTTGGTTACCAATCT | + |
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Preference number: 4 (lower is better) Translates to: LELFLRGRSPLPHVTYFVYSEAV*PVGYQS Trigger: AGATTGGTAACCAACCGGCCATACTGCCTCACTATA...AACAAAATAAGTCACATGAGGTAGAGGAGACCTTCCTCTCAGAAATAGTTCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 90 bp | CTCCAGGGGGAACCCCTGCAGGTCTTCTTCCCTCTGACCAAGAGCTaGGGTCTCCTCGGGCCATCTTACCAACCCATTGGCTTCCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: LQGEPLQVFFPLTKS*GLLGPSYQPIGFLH Trigger: ATGGAGGAAGCCAATGGGTTGGTAAGATGGCCCGAGGAGACCCCAGCTCTTGGTCAGAGGGAAGAAGACCTGCAGGGGTTCCCCCTGGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 90 bp | TCTGACCAAGAGCTGGGGTCTCCTCGGGCCATCTTACCAACCCATTaGCTTCCTCCATTTGGCCGGCTCTGTAAGACCACCGAGGTTCGT | + |
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Preference number: 5 (lower is better) Translates to: SDQELGSPRAILPTH*LPPFGRLCKTTEVR Trigger: ACGAACCTCGGTGGTCTTACAGAGCCGGCCAAATGGAGGAAGCCAATGGGTTGGTAAGATGGCCCGAGGAGACCCCAGCTCTTGGTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 90 bp | TGGTTACCAATCTCTCTAGCTAAGGCCACCACCTCTAAGGCATCCTaGATGGCTTCAGCCTCTGGTTCAGCTTTGGCCCTGGCCCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: WLPISLAKATTSKAS*MASASGSALALAPE Trigger: CTCAGGGGCCAGGGCCAAAGCTGAACCAGAGGCTGAAGCCATCCAGGATGCCTTAGAGGTGGTGGCCTTAGCTAGAGAGATTGGTAACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CAA 90 bp | CCTAGCACTGAGGGTCTGAGGCAGCAGGACTGCTCTGAGTTCAAGGACAGTCTGGGGAAGGCAGCCTTCTaGCAGCTGATACAGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: PSTEGLRQQDCSEFKDSLGKAAF*QLIQRK Trigger: CTTCCTCTGTATCAGCTGCAAGAAGGCTGCCTTCCC...CAGACTGTCCTTGAACTCAGAGCAGTCCTGCTGCCTCAGACCCTCAGTGCTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS TCA 90 bp | CCTGTACATAATATGGTAATAGTCCTCCAAGCAGGGCTCCGAGGGTaGCCAGGAGATGATGGCTCCTGTGTGAGACACGTTCCCAACCTC | + |
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Preference number: 5 (lower is better) Translates to: PVHNMVIVLQAGLRG*PGDDGSCVRHVPNL Trigger: GAGGTTGGGAACGTGTCTCACACAGGAGCCATCATCTCCTGGTCACCCTCGGAGCCCTGCTTGGAGGACTATTACCATATTATGTACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS TCA 90 bp | GGAAGTAGAGAGTGGAAGGAGCGAGGTGTTCCAATGCCACAGAGGTaGTGGTTCGAGGCACCTTCTCCTCGTGATGGAAGTTATAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: GSREWKERGVPMPQR*WFEAPSPRDGSYSA Trigger: TGCGCTATAACTTCCATCACGAGGAGAAGGTGCCTCGAACCATCACCTCTGTGGCATTGGAACACCTCGCTCCTTCCACTCTCTACTTCC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS GCA 90 bp | GCTGATACAGAGGAAGTAGAGAGTGGAAGGAGCGAGGTGTTCCAATaGCACAGAGGTGATGGTTCGAGGCACCTTCTCCTCGTGATGGAA | + |
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Preference number: 5 (lower is better) Translates to: ADTEEVESGRSEVFQ*HRGDGSRHLLLVME Trigger: TTCCATCACGAGGAGAAGGTGCCTCGAACCATCACCTCTGTGGCATTGGAACACCTCGCTCCTTCCACTCTCTACTTCCTCTGTATCAGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CAA 90 bp | ATGTGCACATCTTCATTCCAAGTGATTGTCGCCACTGGGTCCATTCTAATTCCTGCCTCTGGTTCAGCTTaGGCCCTGGCCCCTGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: MCTSSFQVIVATGSILIPASGSA*ALAPEF Trigger: GAACTCAGGGGCCAGGGCCAAAGCTGAACCAGAGGC...AGGAATTAGAATGGACCCAGTGGCGACAATCACTTGGAATGAAGATGTGCACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS TCA 90 bp | ACATGGTACAGTAGTGACTATACGGGAAGGCAGCCTTCTTGCAGCTaGTACAGAGGAAGTAGAGAGTGGAAGGAGCGAGGTGTTCCAATG | + |
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Preference number: 5 (lower is better) Translates to: TWYSSDYTGRQPSCS*YRGSREWKERGVPM Trigger: CATTGGAACACCTCGCTCCTTCCACTCTCTACTTCCTCTGTATCAGCTGCAAGAAGGCTGCCTTCCCGTATAGTCACTACTGTACCATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CAA 90 bp | AAGAGGCTTAGAGACATGGGTCACAAACTAAAAATCTGGTTTCCCTTCCCAGTTATTGGCTTCCTCCATTaGGCCGGCTCTGTAAGACCA | + |
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Preference number: 5 (lower is better) Translates to: KRLRDMGHKLKIWFPFPVIGFLH*AGSVRP Trigger: TGGTCTTACAGAGCCGGCCAAATGGAGGAAGCCAAT...AACTGGGAAGGGAAACCAGATTTTTAGTTTGTGACCCATGTCTCTAAGCCTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CAA 90 bp | AGTCTCATTTCTTCCAAGTACTGTGCCAGATTCAGGTCTAGCTACTTTCACTGTCATCTTACCAACCCATaGGCTTCCTCCATTTGGCCG | + |
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Preference number: 5 (lower is better) Translates to: SLISSKYCARFRSSYFHCHLTNP*ASSIWP Trigger: CGGCCAAATGGAGGAAGCCAATGGGTTGGTAAGATG...ACAGTGAAAGTAGCTAGACCTGAATCTGGCACAGTACTTGGAAGAAATGAGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS-3UTR CAA 90 bp | AGTCTCATTTCTTCCAAGTACTGTGCCAGATTCAGGTCTAGCTACTTTCACTGTAAGATACTGTTCCAGTaGGGCCTGTACATAATATGG | + |
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Preference number: 5 (lower is better) Translates to: SLISSKYCARFRSSYFHCKILFQ*GLYIIW Trigger: CCATATTATGTACAGGCCCAACTGGAACAGTATCTT...ACAGTGAAAGTAGCTAGACCTGAATCTGGCACAGTACTTGGAAGAAATGAGACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 72 bp | CCTGGATGGCTTCAGCCTCTGGTTCAGCTTTGGCCCTaGCCCCTGAGTTCTTTCGTGGCAGTTCCTCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: PGWLQPLVQLWP*PLSSFVAVPPG Trigger: CCCTGGAGGAACTGCCACGAAAGAACTCAGGGGCCAGGGCCAAAGCTGAACCAGAGGCTGAAGCCATCCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CAA 90 bp | TGGGGTCTCCTCGGGCCATCTTACCAACCCATTGGCTTCCTCCATTaGGCCGGCTCTGTAAGACCACCGAGGTTCGTGACAGCGGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: WGLLGPSYQPIGFLH*AGSVRPPRFVTAEA Trigger: TGCCTCCGCTGTCACGAACCTCGGTGGTCTTACAGAGCCGGCCAAATGGAGGAAGCCAATGGGTTGGTAAGATGGCCCGAGGAGACCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 72 bp | GAGCTGGGGTCTCCTCGGGCCATCTTACCAACCCATTaGCTTCCTCCATTTGGCCGGCTCTGTAAGACCACC | + |
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Preference number: 6 (lower is better) Translates to: ELGSPRAILPTH*LPPFGRLCKTT Trigger: GGTGGTCTTACAGAGCCGGCCAAATGGAGGAAGCCAATGGGTTGGTAAGATGGCCCGAGGAGACCCCAGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 72 bp | GAACCCCTGCAGGTCTTCTTCCCTCTGACCAAGAGCTaGGGTCTCCTCGGGCCATCTTACCAACCCATTGGC | + |
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Preference number: 6 (lower is better) Translates to: EPLQVFFPLTKS*GLLGPSYQPIG Trigger: GCCAATGGGTTGGTAAGATGGCCCGAGGAGACCCCAGCTCTTGGTCAGAGGGAAGAAGACCTGCAGGGGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS TCA 72 bp | AGTCCTCCAAGCAGGGCTCCGAGGGTGACCAGGAGATaGTGGCTCCTGTGTGAGACACGTTCCCAACCTCAA | + |
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Preference number: 6 (lower is better) Translates to: SPPSRAPRVTRR*WLLCETRSQPQ Trigger: TTGAGGTTGGGAACGTGTCTCACACAGGAGCCATCATCTCCTGGTCACCCTCGGAGCCCTGCTTGGAGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CAA 72 bp | CTCGGGCCATCTTACCAACCCATTGGCTTCCTCCATTaGGCCGGCTCTGTAAGACCACCGAGGTTCGTGACA | + |
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Preference number: 6 (lower is better) Translates to: LGPSYQPIGFLH*AGSVRPPRFVT Trigger: TGTCACGAACCTCGGTGGTCTTACAGAGCCGGCCAAATGGAGGAAGCCAATGGGTTGGTAAGATGGCCCGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS TCA 72 bp | GAGTGGAAGGAGCGAGGTGTTCCAATGCCACAGAGGTaGTGGTTCGAGGCACCTTCTCCTCGTGATGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: EWKERGVPMPQR*WFEAPSPRDGS Trigger: ACTTCCATCACGAGGAGAAGGTGCCTCGAACCATCACCTCTGTGGCATTGGAACACCTCGCTCCTTCCACTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS GCA 72 bp | GAGGAAGTAGAGAGTGGAAGGAGCGAGGTGTTCCAATaGCACAGAGGTGATGGTTCGAGGCACCTTCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: EEVESGRSEVFQ*HRGDGSRHLLL Trigger: GAGGAGAAGGTGCCTCGAACCATCACCTCTGTGGCATTGGAACACCTCGCTCCTTCCACTCTCTACTTCCTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 72 bp | CGGCAGCCAGCGGACTCTTATCCAGGGTGTGGAACATaGTACAGTAGTGACTATACGGGAAGGCAGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RQPADSYPGCGT*YSSDYTGRQPS Trigger: AGAAGGCTGCCTTCCCGTATAGTCACTACTGTACCATGTTCCACACCCTGGATAAGAGTCCGCTGGCTGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS CCA 72 bp | ATCTCTCTAGCTAAGGCCACCACCTCTAAGGCATCCTaGATGGCTTCAGCCTCTGGTTCAGCTTTGGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: ISLAKATTSKAS*MASASGSALAL Trigger: CAGGGCCAAAGCTGAACCAGAGGCTGAAGCCATCCAGGATGCCTTAGAGGTGGTGGCCTTAGCTAGAGAGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS TCA 72 bp | AATATGGTAATAGTCCTCCAAGCAGGGCTCCGAGGGTaGCCAGGAGATGATGGCTCCTGTGTGAGACACGTT | + |
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Preference number: 6 (lower is better) Translates to: NMVIVLQAGLRG*PGDDGSCVRHV Trigger: AACGTGTCTCACACAGGAGCCATCATCTCCTGGTCACCCTCGGAGCCCTGCTTGGAGGACTATTACCATATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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| CDS TCA 72 bp | AGTAGTGACTATACGGGAAGGCAGCCTTCTTGCAGCTaGTACAGAGGAAGTAGAGAGTGGAAGGAGCGAGGT | + |
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Preference number: 6 (lower is better) Translates to: SSDYTGRQPSCS*YRGSREWKERG Trigger: ACCTCGCTCCTTCCACTCTCTACTTCCTCTGTATCAGCTGCAAGAAGGCTGCCTTCCCGTATAGTCACTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060185.3 |
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