RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FNDC3B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039286

Ensembl transcript IDs: ENSMUST00000046157.10, ENSMUST00000193779.2, ENSMUST00000195008.6

Found 358 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AAGCCCGACAAGGCAAGCTCGTTGGGCACACTGGCTCTCGGTGTCTaGAGCTTGCCCGCCGCTTCCTTCTCTTCTTTATTCCTTTATTTA +
Preference number: 1 (lower is better)
Translates to: KPDKASSLGTLALGV*SLPAASFSSLFLYL
Trigger: TAAATAAAGGAATAAAGAAGAGAAGGAAGCGGCGGGCAAGCTCCAGACACCGAGAGCCAGTGTGCCCAACGAGCTTGCCTTGTCGGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CCA 90 bp ATGGTCGAGGTGGCCTCCTCCGAAGGCACACTGAATATTCTCATGTaGCAATACTCTGACAACACCGGAATCCCAGCCCTGAACTACATA +
Preference number: 1 (lower is better)
Translates to: MVEVASSEGTLNILM*QYSDNTGIPALNYI
Trigger: TATGTAGTTCAGGGCTGGGATTCCGGTGTTGTCAGAGTATTGCCACATGAGAATATTCAGTGTGCCTTCGGAGGAGGCCACCTCGACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 90 bp GAAGTGACGTCACAGTGGGCCAAAAGACACACTTCGATGGAAGGATaGGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTG +
Preference number: 1 (lower is better)
Translates to: EVTSQWAKRHTSMEG*ASEGQSFGKNRFTL
Trigger: CAAGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGTGTCTTTTGGCCCACTGTGACGTCACTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 90 bp GAGAATAAAGTGCTGTCGGCTCGTGTGTCACACGCTTCAGCATTCTaGGAGTTACCGAGTATCGGAATCTCTGCAAGATCAAAGGGGTTT +
Preference number: 1 (lower is better)
Translates to: ENKVLSARVSHASAF*ELPSIGISARSKGF
Trigger: AAACCCCTTTGATCTTGCAGAGATTCCGATACTCGGTAACTCTCAGAATGCTGAAGCGTGTGACACACGAGCCGACAGCACTTTATTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 90 bp GTCACACGCTTCAGCATTCTGAGAGTTACCGAGTATCGGAATCTCTaGAAGATCAAAGGGGTTTTTGGCCTGAAGTATAATTTCCTTTGT +
Preference number: 1 (lower is better)
Translates to: VTRFSILRVTEYRNL*KIKGVFGLKYNFLC
Trigger: ACAAAGGAAATTATACTTCAGGCCAAAAACCCCTTTGATCTTGCAGAGATTCCGATACTCGGTAACTCTCAGAATGCTGAAGCGTGTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 90 bp CAGAACTCTCTAGTGCATAACTCTATCAATATAGGCACGCGACAATaGATTGATCTTAGCACTCTTCCAGGAGATGAATATGGTTTCTGG +
Preference number: 1 (lower is better)
Translates to: QNSLVHNSINIGTRQ*IDLSTLPGDEYGFW
Trigger: CCAGAAACCATATTCATCTCCTGGAAGAGTGCTAAGATCAATGCATTGTCGCGTGCCTATATTGATAGAGTTATGCACTAGAGAGTTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 90 bp ATATTCTCATGTGGCAATACTCTGACAACACCGGAATCCCAGCCCTaGACTACATACACTGTGATTCTGTTAACAGGTATAGATGATCAA +
Preference number: 1 (lower is better)
Translates to: IFSCGNTLTTPESQP*TTYTVILLTGIDDQ
Trigger: TTGATCATCTATACCTGTTAACAGAATCACAGTGTATGTAGTTCAGGGCTGGGATTCCGGTGTTGTCAGAGTATTGCCACATGAGAATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 90 bp TTACCGAGTATCGGAATCTCTGCAAGATCAAAGGGGTTTTTGGCCTaGAGTATAATTTCCTTTGTAACAATTCAACAATTCAGGGAATTC +
Preference number: 1 (lower is better)
Translates to: LPSIGISARSKGFLA*SIISFVTIQQFREF
Trigger: GAATTCCCTGAATTGTTGAATTGTTACAAAGGAAATTATACTTCAGGCCAAAAACCCCTTTGATCTTGCAGAGATTCCGATACTCGGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 90 bp AATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTaGTACATTAGTATCATGGGCACTGAAATATGGTATTCAACTTCA +
Preference number: 1 (lower is better)
Translates to: NGSLVVGFISKISIY*YISIMGTEIWYSTS
Trigger: TGAAGTTGAATACCATATTTCAGTGCCCATGATACTAATGTAGCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCACTGGCTCTCGGTGTCTaGAGCTTGCCCGCCGCTTCC +
Preference number: 2 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDALALGV*SLPAAS
Trigger: GGAAGCGGCGGGCAAGCTCCAGACACCGAGAGCCAG...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCACACTCCCTCTCTCCATaGGGCCAGATGAAGCCCCCA +
Preference number: 2 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAHSLSP*GQMKPP
Trigger: TGGGGGCTTCATCTGGCCGCATGGAGAGAGGGAGTG...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTTCGGTGTCTGGAGCTTaGCCGCCGCTTCCTTCTCTT +
Preference number: 2 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSSVSGA*PPLPSL
Trigger: AAGAGAAGGAAGCGGCGGGCAAGCTCCAGACACCGA...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCTGGCTCTCGGTGTCTaGAGCTTGCCCGCCGCTTCC +
Preference number: 2 (lower is better)
Translates to: RWIQGLLALTGIESPFDLLALGV*SLPAAS
Trigger: GGAAGCGGCGGGCAAGCTCCAGACACCGAGAGCCAG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATACAAGGCAAGCTCGTTaGGCACACTGGCTCTCGGTG +
Preference number: 2 (lower is better)
Translates to: TLRWKDELPKARALAKIDTRQAR*AHWLSV
Trigger: CACCGAGAGCCAGTGTGCCCAACGAGCTTGCCTTGT...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTCCGGAATCCCAGCCCTaGACTACATACACTGTGATT +
Preference number: 2 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSPESQP*TTYTVI
Trigger: AATCACAGTGTATGTAGTTCAGGGCTGGGATTCCGG...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CAA 90 bp GAAGAGGGGAATCGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTaGCACCTCCAACTCTTAAGTGTCCCTGAGGTACTTGAACATTGT +
Preference number: 2 (lower is better)
Translates to: EEGNRLCLSHPFGIQ*HLQLLSVPEVLEHC
Trigger: ACAATGTTCAAGTACCTCAGGGACACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCGATTCCCCTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGCGCATTTGGTTATGTaGCTTCTTAGACAGGCAACT +
Preference number: 2 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAAHLVM*LLRQAT
Trigger: AGTTGCCTGTCTAAGAAGTCACATAACCAAATGCGC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCCTAACTATTGCACAATaGCCTCTTAAAGTTACTGCT +
Preference number: 2 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSLTIAQ*PLKVTA
Trigger: AGCAGTAACTTTAAGAGGGCATTGTGCAATAGTTAG...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCCCCCAAACATCTCATaGTCACAGCCAGTTTCCACT +
Preference number: 2 (lower is better)
Translates to: RWKDELPKARALAKIDLPPPNIS*SQPVST
Trigger: AGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGGGCACTGAAATATaGTATTCAACTTCATTCACG +
Preference number: 2 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSMGTEI*YSTSFT
Trigger: CGTGAATGAAGTTGAATACCATATTTCAGTGCCCAT...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCCTCCGAAGGCACACTaGATATTCTCATGTGGCAAT +
Preference number: 2 (lower is better)
Translates to: RWKDELPKARALAKIDLPPPKAH*IFSCGN
Trigger: ATTGCCACATGAGAATATTCAGTGTGCCTTCGGAGG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATCCTCCGAAGGCACACTaGATATTCTCATGTGGCAAT +
Preference number: 2 (lower is better)
Translates to: TLRWKDELPKARALAKIDPPKAH*IFSCGN
Trigger: ATTGCCACATGAGAATATTCAGTGTGCCTTCGGAGG...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGACAAGGCAAGCTCGTTaGGCACACTGGCTCTCGGTG +
Preference number: 2 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKTRQAR*AHWLSV
Trigger: CACCGAGAGCCAGTGTGCCCAACGAGCTTGCCTTGT...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCGCTACATTAGTATCATaGGCACTGAAATATGGTATT +
Preference number: 2 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSATLVS*ALKYGI
Trigger: AATACCATATTTCAGTGCCCATGATACTAATGTAGC...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCATGCTATGGACCGATGTaGAAATCTACAATGCTCTAT +
Preference number: 2 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDACYGPM*KSTMLY
Trigger: ATAGAGCATTGTAGATTTTCACATCGGTCCATAGCA...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCATCGGTGTCTGGAGCTTaGCCGCCGCTTCCTTCTCTT +
Preference number: 2 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPSVSGA*PPLPSL
Trigger: AAGAGAAGGAAGCGGCGGGCAAGCTCCAGACACCGA...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTAATCCCCATTTGATTTaGTTACTCATGCATGGGAAA +
Preference number: 2 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSNPHLI*LLMHGK
Trigger: TTTCCCATGCATGAGTAATCAAATCAAATGGGGATT...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTTGATTACTCATGCATaGGAAAACAGGCACAGAGAG +
Preference number: 2 (lower is better)
Translates to: RWKDELPKARALAKIDLPLITHA*ENRHRE
Trigger: CTCTCTGTGCCTGTTTTCCCATGCATGAGTAATCAA...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGCCGGAATCCCAGCCCTaGACTACATACACTGTGATT +
Preference number: 2 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKPESQP*TTYTVI
Trigger: AATCACAGTGTATGTAGTTCAGGGCTGGGATTCCGG...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTGCTATGGACCGATGTaGAAATCTACAATGCTCTAT +
Preference number: 2 (lower is better)
Translates to: TLRWKDELPKARALAKIDCYGPM*KSTMLY
Trigger: ATAGAGCATTGTAGATTTTCACATCGGTCCATAGCA...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGCCCCCAAACATCTCATaGTCACAGCCAGTTTCCACT +
Preference number: 2 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKPPNIS*SQPVST
Trigger: AGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGG...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGGTCAACAGAACACTTaGTTTTATTGTTCCTTTGAA +
Preference number: 2 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAGQQNT*FYCSFE
Trigger: TTCAAAGGAACAATAAAACCAAGTGTTCTGTTGACC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATATTTATAGGCGCATTTaGTTATGTGACTTCTTAGAC +
Preference number: 2 (lower is better)
Translates to: TLRWKDELPKARALAKIDIYRRI*LCDFLD
Trigger: GTCTAAGAAGTCACATAACCAAATGCGCCTATAAAT...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGCTACATTAGTATCATaGGCACTGAAATATGGTATT +
Preference number: 2 (lower is better)
Translates to: TLRWKDELPKARALAKIDATLVS*ALKYGI
Trigger: AATACCATATTTCAGTGCCCATGATACTAATGTAGC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATAGATTGCACTGTCATTaGCATTTAAAGTACTGTATG +
Preference number: 2 (lower is better)
Translates to: TLRWKDELPKARALAKIDRLHCH*HLKYCM
Trigger: CATACAGTACTTTAAATGCCAATGACAGTGCAATCT...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCTGTGAAAATCTACAATaGTCTATCATTTATAGGCGC +
Preference number: 2 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSCENLQ*SIIYRR
Trigger: GCGCCTATAAATGATAGAGCATTGTAGATTTTCACA...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGAATCCCCATTTGATTTaGTTACTCATGCATGGGAAA +
Preference number: 2 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKNPHLI*LLMHGK
Trigger: TTTCCCATGCATGAGTAATCAAATCAAATGGGGATT...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR GCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCTGTGAAAATCTACAATaGTCTATCATTTATAGGCGC +
Preference number: 2 (lower is better)
Translates to: NVNGSLVVGFISKISIYCCENLQ*SIIYRR
Trigger: GCGCCTATAAATGATAGAGCATTGTAGATTTTCACA...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CCA 72 bp AGAAGCACACGGGGAAGCCCGACAAGGCAAGCTCGTTaGGCACACTGGCTCTCGGTGTCTGGAGCTTGCCCG +
Preference number: 3 (lower is better)
Translates to: RSTRGSPTRQAR*AHWLSVSGACP
Trigger: CGGGCAAGCTCCAGACACCGAGAGCCAGTGTGCCCAACGAGCTTGCCTTGTCGGGCTTCCCCGTGTGCTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 72 bp ACCATTCCACTGCATCTGCCTTCACCCGCCTGTGACTaGCGCAGGGAATGCAGAAGTGACGTCACAGTGGGC +
Preference number: 3 (lower is better)
Translates to: TIPLHLPSPACD*RRECRSDVTVG
Trigger: GCCCACTGTGACGTCACTTCTGCATTCCCTGCGGCAGTCACAGGCGGGTGAAGGCAGATGCAGTGGAATGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 72 bp CATCTGCCTTCACCCGCCTGTGACTGCCGCAGGGAATaGAGAAGTGACGTCACAGTGGGCCAAAAGACACAC +
Preference number: 3 (lower is better)
Translates to: HLPSPACDCRRE*RSDVTVGQKTH
Trigger: GTGTGTCTTTTGGCCCACTGTGACGTCACTTCTGCATTCCCTGCGGCAGTCACAGGCGGGTGAAGGCAGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 72 bp GCTCGTTGGGCACACTGGCTCTCGGTGTCTGGAGCTTaGCCGCCGCTTCCTTCTCTTCTTTATTCCTTTATT +
Preference number: 3 (lower is better)
Translates to: ARWAHWLSVSGA*PPLPSLLYSFI
Trigger: AATAAAGGAATAAAGAAGAGAAGGAAGCGGCGGGCAAGCTCCAGACACCGAGAGCCAGTGTGCCCAACGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CCA 72 bp GTGGCCTCCTCCGAAGGCACACTGAATATTCTCATGTaGCAATACTCTGACAACACCGGAATCCCAGCCCTG +
Preference number: 3 (lower is better)
Translates to: VASSEGTLNILM*QYSDNTGIPAL
Trigger: CAGGGCTGGGATTCCGGTGTTGTCAGAGTATTGCCACATGAGAATATTCAGTGTGCCTTCGGAGGAGGCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 72 bp CAGCCAGTTTCCACTCCCTCTCTCCATGCGGCCAGATaGAGCCCCCAGAAACAGGACAAATGTAAATGGTTC +
Preference number: 3 (lower is better)
Translates to: QPVSTPSLHAAR*SPQKQDKCKWF
Trigger: GAACCATTTACATTTGTCCTGTTTCTGGGGGCTTCATCTGGCCGCATGGAGAGAGGGAGTGGAAACTGGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CAA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGTGTCCCTGAGGTACTaGAACATTGTGGACTTGGTT +
Preference number: 3 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAVSLRY*NIVDLV
Trigger: AACCAAGTCCACAATGTTCAAGTACCTCAGGGACAC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 72 bp TCACAGTGGGCCAAAAGACACACTTCGATGGAAGGATaGGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGA +
Preference number: 3 (lower is better)
Translates to: SQWAKRHTSMEG*ASEGQSFGKNR
Trigger: TCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGTGTCTTTTGGCCCACTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CAA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAAAGATGATCAAAGGCTaGCGAAAGACATCAGTGGGA +
Preference number: 3 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAKMIKG*RKTSVG
Trigger: TCCCACTGATGTCTTTCGCAAGCCTTTGATCATCTT...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CAA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTAAGATGATCAAAGGCTaGCGAAAGACATCAGTGGGA +
Preference number: 3 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFKMIKG*RKTSVG
Trigger: TCCCACTGATGTCTTTCGCAAGCCTTTGATCATCTT...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CAA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCCTTTTGGAATACAGTaGCACCTCCAACTCTTAAGT +
Preference number: 3 (lower is better)
Translates to: RWKDELPKARALAKIDLPPFGIQ*HLQLLS
Trigger: ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 72 bp TGTGGCAATACTCTGACAACACCGGAATCCCAGCCCTaGACTACATACACTGTGATTCTGTTAACAGGTATA +
Preference number: 3 (lower is better)
Translates to: CGNTLTTPESQP*TTYTVILLTGI
Trigger: TATACCTGTTAACAGAATCACAGTGTATGTAGTTCAGGGCTGGGATTCCGGTGTTGTCAGAGTATTGCCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 72 bp CTAGTGCATAACTCTATCAATATAGGCACGCGACAATaGATTGATCTTAGCACTCTTCCAGGAGATGAATAT +
Preference number: 3 (lower is better)
Translates to: LVHNSINIGTRQ*IDLSTLPGDEY
Trigger: ATATTCATCTCCTGGAAGAGTGCTAAGATCAATGCATTGTCGCGTGCCTATATTGATAGAGTTATGCACTAG
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CCA 72 bp GATCTTAGCACTCTTCCAGGAGATGAATATGGTTTCTaGGTACATGTAAACCTTTCAATCACTGGTAATGGA +
Preference number: 3 (lower is better)
Translates to: DLSTLPGDEYGF*VHVNLSITGNG
Trigger: TCCATTACCAGTGATTGAAAGGTTTACATGTACCCAGAAACCATATTCATCTCCTGGAAGAGTGCTAAGATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR-3UTR CAA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCACCTTTTGGAATACAGTaGCACCTCCAACTCTTAAGT +
Preference number: 3 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPPFGIQ*HLQLLS
Trigger: ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGG...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR GCA 72 bp CTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTaGTACATTAGTATCATGGGCACTGAAATATGGTAT +
Preference number: 3 (lower is better)
Translates to: LVVGFISKISIY*YISIMGTEIWY
Trigger: ATACCATATTTCAGTGCCCATGATACTAATGTAGCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR TCA 72 bp ATCGGAATCTCTGCAAGATCAAAGGGGTTTTTGGCCTaGAGTATAATTTCCTTTGTAACAATTCAACAATTC +
Preference number: 3 (lower is better)
Translates to: IGISARSKGFLA*SIISFVTIQQF
Trigger: GAATTGTTGAATTGTTACAAAGGAAATTATACTTCAGGCCAAAAACCCCTTTGATCTTGCAGAGATTCCGAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CCA 72 bp TCAGTAAGATTTCTATCTACTGCTACATTAGTATCATaGGCACTGAAATATGGTATTCAACTTCATTCACGT +
Preference number: 3 (lower is better)
Translates to: SVRFLSTATLVS*ALKYGIQLHSR
Trigger: ACGTGAATGAAGTTGAATACCATATTTCAGTGCCCATGATACTAATGTAGCAGTAGATAGAAATCTTACTGA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CAA 72 bp CAGAAGCACACGGGGAAGCCCGACAAGGCAAGCTCGTaGGGCACACTGGCTCTCGGTGTCTGGAGCTTGCCC +
Preference number: 4 (lower is better)
Translates to: QKHTGKPDKASS*GTLALGVWSLP
Trigger: GGGCAAGCTCCAGACACCGAGAGCCAGTGTGCCCAACGAGCTTGCCTTGTCGGGCTTCCCCGTGTGCTTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGCAGGAGACTGCGGTGTaGCCACCACCCGGCGGACTC +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRQETAV*PPPGGL
Trigger: GAGTCCGCCGGGTGGTGGTCACACCGCAGTCTCCTG...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTTCGCTCTGTCTTCTTaGTCCCAGGTCCACCGCCGC +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRFALSS*SQVHRR
Trigger: GCGGCGGTGGACCTGGGATCAAGAAGACAGAGCGAA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGACCCAAAACCCTCGGTaGTCGGCACTGACCTGGTGC +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRTQNPR*SALTWC
Trigger: GCACCAGGTCAGTGCCGACCACCGAGGGTTTTGGGT...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTCAGGTCCACCGCCGCTaGCACCTCCCCCACCTCCAC +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSQVHRR*HLPHLH
Trigger: GTGGAGGTGGGGGAGGTGGCAGCGGCGGTGGACCTG...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTTCCAGGCAGCAGGTTaGCAACCGTGCACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRFQAAG*QPCTPA
Trigger: AGCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTCTGGTGCGCAGCTATaGGTGGTGAAGCTGACTGGC +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRSGAQL*VVKLTG
Trigger: GCCAGTCAGCTTCACCACCCATAGCTGCGCACCAGA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCAGGCGAGCAGCCTTCTaGCCTGCTCCACTGCAGGGT +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSRRAAF*PAPLQG
Trigger: ACCCTGCAGTGGAGCAGGCCAGAAGGCTGCTCGCCT...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGGCCCTGCGGCAGTGGTaGTTTCTGACACATCAGAGT +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRALRQW*FLTHQS
Trigger: ACTCTGATGTGTCAGAAATCACCACTGCCGCAGGGC...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGACTGGTCTTCTCGGGTaGCGTAGCTCGACATTCCAT +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRTGLLG*RSSTFH
Trigger: ATGGAATGTCGAGCTACGTCACCCGAGAAGACCAGT...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCACGCATCCGTCAGGCGTaGAGGAGACACGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDARIRQA*RRHAVL
Trigger: GAGCACCGCGTGTCTCCTTCACGCCTGACGGATGCG...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCGGCTGGGGGAAAAACTaGGGTGGCATATCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSGWGKN*GGISPG
Trigger: GCCTGGAGATATGCCACCCCAGTTTTTCCCCCAGCC...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGGCTCGCTATATATTGTaGGAGGAAGGTGAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRARYIL*EEGEAG
Trigger: CCCAGCCTCACCTTCCTCCCACAATATATAGCGAGC...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTTCTGGCGGTCGATCTaGCGGTCCTTCAGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRFWRSI*RSFSFL
Trigger: TAAGAAGCTGAAGGACCGCCAGATCGACCGCCAGAA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCTCTGGTGCGCAGCTATaGGTGGTGAAGCTGACTGGC +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSSGAQL*VVKLTG
Trigger: GCCAGTCAGCTTCACCACCCATAGCTGCGCACCAGA...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTCACTTGGACAAGAATaGCCTGCTGAGCTGCTTCTC +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRSLGQE*PAELLL
Trigger: GAGAAGCAGCTCAGCAGGTCATTCTTGTCCAAGTGA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATTGTGGGAGGAAGGTaGGGCTGGGGGAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSIVGGR*GWGKNW
Trigger: CCAGTTTTTCCCCCAGCCTCACCTTCCTCCCACAAT...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGAATGACCTGCTGAGCTaGTTCTCCGTTCACCAAGTG +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRNDLLS*FSVHQV
Trigger: CACTTGGTGAACGGAGAAGCAGCTCAGCAGGTCATT...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCAGGTCCACCGCCGCTaGCACCTCCCCCACCTCCAC +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLQVHRR*HLPHLH
Trigger: GTGGAGGTGGGGGAGGTGGCAGCGGCGGTGGACCTG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTCTGCAGCAATACTGTaGAGCAGGCAACAGATCTCG +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRSAAIL*SRQQIS
Trigger: CGAGATCTGTTGCCTGCTGCACAGTATTGCTGCAGA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCACTGTTGAGGCGGTTCTaGCGGTCGATCTGGCGGTCC +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDALLRRF*RSIWRS
Trigger: GGACCGCCAGATCGACCGCCAGAACCGCCTCAACAG...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGCAGCAGCATGTGTCTTaGAGTTACTGTCTCCCCACT +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRQQHVS*SYCLPT
Trigger: AGTGGGGAGACAGTAACTCCAAGACACATGCTGCTG...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCTGTGCGAGTTCTGGATaGAGTGTGGATGGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSCASSG*SVDGGS
Trigger: TGACCCACCATCCACACTTCATCCAGAACTCGCACA...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTTCCACACTGTATTCTaGGACCTCACAGCCACTTTC +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRFHTVF*DLTATF
Trigger: GAAAGTGGCTGTGAGGTCTCAGAATACAGTGTGGAA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCGATGGGTTGGAGACATaGCTGAGGGATAACTCGGTG +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSDGLET*LRDNSV
Trigger: CACCGAGTTATCCCTCAGCCATGTCTCCAACCCATC...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGCCGGTATGTCGTTTCTaGAAGGAGGTTCTTCATCAC +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRPVCRF*KEVLHH
Trigger: GTGATGAAGAACCTCCTTCCAGAAACGACATACCGG...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CAA 72 bp AGCTCGTTGGGCACACTGGCTCTCGGTGTCTGGAGCTaGCCCGCCGCTTCCTTCTCTTCTTTATTCCTTTAT +
Preference number: 4 (lower is better)
Translates to: SSLGTLALGVWS*PAASFSSLFLY
Trigger: ATAAAGGAATAAAGAAGAGAAGGAAGCGGCGGGCAAGCTCCAGACACCGAGAGCCAGTGTGCCCAACGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGGACACTGAAGCCATGTaGTGTGACAGGTCCTTTAAT +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRDTEAM*CDRSFN
Trigger: ATTAAAGGACCTGTCACATCACATGGCTTCAGTGTC...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATAAGGCACACAGAGGGTaGGTCTGGGTGGGCACTGGG +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDKAHRG*VWVGTG
Trigger: CCCAGTGCCCACCCAGACTCACCCTCTGTGTGCCTT...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGGTGCCAAGGGCATCTaGGGGATGTTTCCCAACGTG +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAGAKGI*GMFPNV
Trigger: CACGTTGGGAAACATCCCGCAGATGCCCTTGGCACC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTTTCCAGGCAGCAGGTTaGCAACCGTGCACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSFQAAG*QPCTPA
Trigger: AGCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAA...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp GGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATGCGGTCTCCCTTGTACACCTaGTTGTACTCAGAGTCTCTT +
Preference number: 4 (lower is better)
Translates to: GPQTSHAHSQFPLPLSMRSPLYT*LYSESL
Trigger: AAGAGACTCTGAGTACAAGCAGGTGTACAAGGGAGA...CCGCATGGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTTCTCCGTTCACCAAGTaGGGCATCATGGCCACCTCC +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSSPFTK*GIMATS
Trigger: GGAGGTGGCCATGATGCCCCACTTGGTGAACGGAGA...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGTGGAAGGTGGGCTGTTaGGGCGGTTCTGGCGGTCGA +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLWKVGC*GGSGGR
Trigger: TCGACCGCCAGAACCGCCTCAACAGCCCACCTTCCA...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCTCGGTGGTCGGCACTaGCCTGGTGCAAGGCTTAGT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPLGGRH*PGARLS
Trigger: ACTAAGCCTTGCACCAGGTCAGTGCCGACCACCGAG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTGCCCTGCGGCAGTGGTaGTTTCTGACACATCAGAGT +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSALRQW*FLTHQS
Trigger: ACTCTGATGTGTCAGAAATCACCACTGCCGCAGGGC...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCCGCATCCGTCAGGCGTaGAGGAGACACGCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSRIRQA*RRHAVL
Trigger: GAGCACCGCGTGTCTCCTTCACGCCTGACGGATGCG...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCCCGGCGGACTCCGGTaGTGTCTTCAATCACCTGTG +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPPGGLR*CLQSPV
Trigger: CACAGGTGATTGAAGACAGCACCGGAGTCCGCCGGG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAACTTTTGCTCCTGTGTaGCAGCTTGGGAGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDATFAPV*QLGREG
Trigger: CCCTTCCCTCCCAAGCTGGCACACAGGAGCAAAAGT...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCGAATTCCCTTCTAACTaGGTCACTCGAGGTGCTTTG +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSEFPSN*VTRGAL
Trigger: CAAAGCACCTCGAGTGACGCAGTTAGAAGGGAATTC...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCACGTCGGTGGGCATCATaGCCTTCATCTTGGCCTCTT +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDARRWAS*PSSWPL
Trigger: AAGAGGCCAAGATGAAGGGCATGATGCCCACCGACG...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTCTGTTGAGGCGGTTCTaGCGGTCGATCTGGCGGTCC +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFLLRRF*RSIWRS
Trigger: GGACCGCCAGATCGACCGCCAGAACCGCCTCAACAG...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGTAGATGGTGGAAGGTaGGCTGTTGAGGCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAVDGGR*AVEAVL
Trigger: CAGAACCGCCTCAACAGCCCACCTTCCACCATCTAC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTAATGAGGGGTCTGGTTaGAGGGCCAGGTCTGTCGGG +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPNEGSG*RARSVG
Trigger: CCCGACAGACCTGGCCCTCCAACCAGACCCCTCATT...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTGGCCACCTCCCCATTaGGCAGAGGTGGCAATTCCA +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPWPPPH*AEVAIP
Trigger: TGGAATTGCCACCTCTGCTCAATGGGGAGGTGGCCA...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCCAGGAGACTGCGGTGTaGCCACCACCCGGCGGACTC +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCQETAV*PPPGGL
Trigger: GAGTCCGCCGGGTGGTGGTCACACCGCAGTCTCCTG...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCTGGAAGGTGGGCTGTTaGGGCGGTTCTGGCGGTCGA +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSWKVGC*GGSGGR
Trigger: TCGACCGCCAGAACCGCCTCAACAGCCCACCTTCCA...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCACGGAGCAGGATCCCTTaGCAGAATTGTACACGGCAT +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDARSRIP*QNCTRH
Trigger: ATGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCG...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGTGCAAGGCTTAGTGTaGGGACAGGGAGACTTTCAG +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAVQGLV*GQGDFQ
Trigger: CTGAAAGTCTCCCTGTCCGCACACTAAGCCTTGCAC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTCTCCGTTCACCAAGTaGGGCATCATGGCCACCTCC +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPSPFTK*GIMATS
Trigger: GGAGGTGGCCATGATGCCCCACTTGGTGAACGGAGA...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGGCTGGGGGAAAAACTaGGGTGGCATATCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDGWGKN*GGISPG
Trigger: GCCTGGAGATATGCCACCCCAGTTTTTCCCCCAGCC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTGCTCGCTATATATTGTaGGAGGAAGGTGAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSARYIL*EEGEAG
Trigger: CCCAGCCTCACCTTCCTCCCACAATATATAGCGAGC...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCACAACTGCTCTTGCCTaGATATTAGACACCTGTGGT +
Preference number: 4 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSTTALA*ILDTCG
Trigger: ACCACAGGTGTCTAATATCCAGGCAAGAGCAGTTGT...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTGGTGGTGAAGCTGACTaGCTCGGAGCAGGATCCCTT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPGGEAD*LGAGSL
Trigger: AAGGGATCCTGCTCCGAGCCAGTCAGCTTCACCACC...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGACCCAAAACCCTCGGTaGTCGGCACTGACCTGGTGC +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLTQNPR*SALTWC
Trigger: GCACCAGGTCAGTGCCGACCACCGAGGGTTTTGGGT...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCTTCGCTCTGTCTTCTTaGTCCCAGGTCCACCGCCGC +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSFALSS*SQVHRR
Trigger: GCGGCGGTGGACCTGGGATCAAGAAGACAGAGCGAA...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTTCTGCAGCAATACTGTaGAGCAGGCAACAGATCTCG +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSSAAIL*SRQQIS
Trigger: CGAGATCTGTTGCCTGCTGCACAGTATTGCTGCAGA...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCGTCGGTGGGCATCATaGCCTTCATCTTGGCCTCTT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPRRWAS*PSSWPL
Trigger: AAGAGGCCAAGATGAAGGGCATGATGCCCACCGACG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTGGTGGTGAAGCTGACTaGCTCGGAGCAGGATCCCTT +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFGGEAD*LGAGSL
Trigger: AAGGGATCCTGCTCCGAGCCAGTCAGCTTCACCACC...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTCCTGTGTGCCAGCTTaGGAGGGAAGGGACATTCTG +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPSCVPA*EGRDIL
Trigger: CAGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGA...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTTGGAGGCCTGAGATTTaGAATGTGGCTTCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSWRPEI*NVASSP
Trigger: GGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCA...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCTGGCCACCTCCCCATTaGGCAGAGGTGGCAATTCCA +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSWPPPH*AEVAIP
Trigger: TGGAATTGCCACCTCTGCTCAATGGGGAGGTGGCCA...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGGCAGTGGTGATTTCTaGCACATCAGAGTAGGGACC +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDGSGDF*HIRVGT
Trigger: GGTCCCTACTCTGATGTGTCAGAAATCACCACTGCC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGAAGGCACACAGAGGGTaGGTCTGGGTGGGCACTGGG +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKKAHRG*VWVGTG
Trigger: CCCAGTGCCCACCCAGACTCACCCTCTGTGTGCCTT...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTCGCTTTTGGTTGTGCTaGAGGTGTAGGTTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSRFWLC*RCRFLS
Trigger: ACTCAGAAACCTACACCTTCAGCACAACCAAAAGCG...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACCCGGCGGACTCCGGTaGTGTCTTCAATCACCTGTG +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETPGGLR*CLQSPV
Trigger: CACAGGTGATTGAAGACAGCACCGGAGTCCGCCGGG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTGAAGGGACATTCTGGTaGGCAGCTATGGGTGGTGAA +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPEGTFW*AAMGGE
Trigger: TTCACCACCCATAGCTGCGCACCAGAATGTCCCTTC...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGAAGGGACATTCTGGTaGGCAGCTATGGGTGGTGAA +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDEGTFW*AAMGGE
Trigger: TTCACCACCCATAGCTGCGCACCAGAATGTCCCTTC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGACTTTTGCTCCTGTGTaGCAGCTTGGGAGGGAAGGG +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLTFAPV*QLGREG
Trigger: CCCTTCCCTCCCAAGCTGGCACACAGGAGCAAAAGT...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGAATTCCCTTCTAACTaGGTCACTCGAGGTGCTTTG +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAEFPSN*VTRGAL
Trigger: CAAAGCACCTCGAGTGACGCAGTTAGAAGGGAATTC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTTCTGGCGGTCGATCTaGCGGTCCTTCAGCTTCTTA +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPFWRSI*RSFSFL
Trigger: TAAGAAGCTGAAGGACCGCCAGATCGACCGCCAGAA...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGCAGGTCAGAATCACTaGATTTTGGGCTGCTCCTCG +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDAGQNH*ILGCSS
Trigger: CGAGGAGCAGCCCAAAATCCAGTGATTCTGACCTGC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTTGTGCGAGTTCTGGATaGAGTGTGGATGGTGGGTCA +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFCASSG*SVDGGS
Trigger: TGACCCACCATCCACACTTCATCCAGAACTCGCACA...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCCTCGGTGGTCGGCACTaGCCTGGTGCAAGGCTTAGT +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCLGGRH*PGARLS
Trigger: ACTAAGCCTTGCACCAGGTCAGTGCCGACCACCGAG...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGGTAAAGGTCTCACCTaGGTTCACTTGGACAAGAAT +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAGKGLT*VHLDKN
Trigger: ATTCTTGTCCAAGTGAACCCAGGTGAGACCTTTACC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCGTAGATGGTGGAAGGTaGGCTGTTGAGGCGGTTCTG +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSVDGGR*AVEAVL
Trigger: CAGAACCGCCTCAACAGCCCACCTTCCACCATCTAC...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTAGAATCACTGGATTTTaGGCTGCTCCTCGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPRITGF*AAPRSS
Trigger: CGAAGAGCGAGGAGCAGCCCAAAATCCAGTGATTCT...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCAAGGAAAGACCACCATaGGGTCCACAGGACAGTCCG +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSKERPP*GPQDSP
Trigger: CGGACTGTCCTGTGGACCCCATGGTGGTCTTTCCTT...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCAAGGCGAGCAGCCTTCTaGCCTGCTCCACTGCAGGGT +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPRRAAF*PAPLQG
Trigger: ACCCTGCAGTGGAGCAGGCCAGAAGGCTGCTCGCCT...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCCTTGTAGGTGTGGCTaGGTCCTCGGTAGATTGAGA +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLPCRCG*VLGRLR
Trigger: TCTCAATCTACCGAGGACCCAGCCACACCTACAAGG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCAAACTGTTCGTCGGTaGGCATCATGCCCTTCATCT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPQTVRR*ASCPSS
Trigger: AGATGAAGGGCATGATGCCCACCGACGAACAGTTTG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTAATGGACCCATTGGGTaGCATCATGGGAACTTCAGC +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFNGPIG*HHGNFS
Trigger: GCTGAAGTTCCCATGATGTCACCCAATGGGTCCATT...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCCGGAGCAGGATCCCTTaGCAGAATTGTACACGGCAT +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSRSRIP*QNCTRH
Trigger: ATGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCG...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTTCTTATGTGGAGGCTTaGTGTACTGGTCTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFSYVEA*CTGLLG
Trigger: CCCGAGAAGACCAGTACAGCAAGCCTCCACATAAGA...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCATCCAACTCATACTCTTaGAGGTCAGAATCACTGGAT +
Preference number: 4 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDASNSYS*RSESLD
Trigger: ATCCAGTGATTCTGACCTGCAAGAGTATGAGTTGGA...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGGGTGCCAAGGGCATCTaGGGGATGTTTCCCAACGTG +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKGAKGI*GMFPNV
Trigger: CACGTTGGGAAACATCCCGCAGATGCCCTTGGCACC...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGAATTCCAGGGGGATCTaGTCGGTCATCATCATGGTG +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLNSRGI*SVIIMV
Trigger: CACCATGATGATGACCGACCAGATCCCCCTGGAATT...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTGAGGAATGGACCCATTaGGTGACATCATGGGAACTT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPEEWTH*VTSWEL
Trigger: AAGTTCCCATGATGTCACCCAATGGGTCCATTCCTC...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGAGAATCACTGGATTTTaGGCTGCTCCTCGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLRITGF*AAPRSS
Trigger: CGAAGAGCGAGGAGCAGCCCAAAATCCAGTGATTCT...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAAAGGAAAGACCACCATaGGGTCCACAGGACAGTCCG +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETKERPP*GPQDSP
Trigger: CGGACTGTCCTGTGGACCCCATGGTGGTCTTTCCTT...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTAGTTTGCAGTGCTTCTaGCTTCCAAAGAAACACTGT +
Preference number: 4 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSSLQCF*LPKKHC
Trigger: ACAGTGTTTCTTTGGAAGCCAGAAGCACTGCAAACT...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTCAGCAGCATGTGTCTTaGAGTTACTGTCTCCCCACT +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFQQHVS*SYCLPT
Trigger: AGTGGGGAGACAGTAACTCCAAGACACATGCTGCTG...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCAATCCGTGGCAGGCCTaGGATCTTTCAGGTTACACT +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSNPWQA*DLSGYT
Trigger: AGTGTAACCTGAAAGATCTCAGGCCTGCCACGGATT...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATACTGTGTGCTTCGCTTaGGATTTTTCACAGTACAGG +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDTVCFA*DFSQYR
Trigger: CCTGTACTGTGAAAAATCTCAAGCGAAGCACACAGT...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTGGAAGCAGTCAGCCTaGATTTATACTGTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDWKQSA*IYTVCF
Trigger: GAAGCACACAGTATAAATTCAGGCTGACTGCTTCCA...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCCCGAAAGAATGTCTTaGACCCTCTTTACTTCCAAC +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPPERMS*TLFTSN
Trigger: GTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCGGG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCAGCACAACTGCTCTTaGCTGGATATTAGACACCTG +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLQHNCS*LDIRHL
Trigger: CAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTCTCCCTTGTACACCTaGTTGTACTCAGAGTCTCTT +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDSPLYT*LYSESL
Trigger: AAGAGACTCTGAGTACAAGCAGGTGTACAAGGGAGA...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTACCTGTAATCTGTGTTaGTCTGGAGGCCTGAGATTT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPTCNLC*SGGLRF
Trigger: AAATCTCAGGCCTCCAGAGCAACACAGATTACAGGT...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTGAGGAATGGACCCATTaGGTGACATCATGGGAACTT +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFEEWTH*VTSWEL
Trigger: AAGTTCCCATGATGTCACCCAATGGGTCCATTCCTC...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAGATGGGTTGGAGACATaGCTGAGGGATAACTCGGTG +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETDGLET*LRDNSV
Trigger: CACCGAGTTATCCCTCAGCCATGTCTCCAACCCATC...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAGCAGGTCAGAATCACTaGATTTTGGGCTGCTCCTCG +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETAGQNH*ILGCSS
Trigger: CGAGGAGCAGCCCAAAATCCAGTGATTCTGACCTGC...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCTCCTGTGTGCCAGCTTaGGAGGGAAGGGACATTCTG +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCSCVPA*EGRDIL
Trigger: CAGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGA...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTCCAACTCATACTCTTaGAGGTCAGAATCACTGGAT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPSNSYS*RSESLD
Trigger: ATCCAGTGATTCTGACCTGCAAGAGTATGAGTTGGA...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTAGAGCTTTGTCAGTTTaGAGTGCTTCTGGCTTCCAA +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFRALSV*SASGFQ
Trigger: TTGGAAGCCAGAAGCACTGCAAACTGACAAAGCTCT...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCGTGCAAGGCTTAGTGTaGGGACAGGGAGACTTTCAG +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCVQGLV*GQGDFQ
Trigger: CTGAAAGTCTCCCTGTCCGCACACTAAGCCTTGCAC...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAAATTCCAGGGGGATCTaGTCGGTCATCATCATGGTG +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETNSRGI*SVIIMV
Trigger: CACCATGATGATGACCGACCAGATCCCCCTGGAATT...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCAGGGGGATAATTTCTaGCTCGCTATATATTGTGGG +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLQGDNF*LAIYCG
Trigger: CCCACAATATATAGCGAGCCAGAAATTATCCCCCTG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCCTTCAGCTTCTTATGTaGAGGCTTGCTGTACTGGTC +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSLQLLM*RLAVLV
Trigger: GACCAGTACAGCAAGCCTCCACATAAGAAGCTGAAG...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCTCTCCAGTGTATTTTaGGTGGAAATGGCTATCGTT +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPLSSVF*VEMAIV
Trigger: AACGATAGCCATTTCCACCCAAAATACACTGGAGAG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGAACCAGGACTTCACTTaGGCAGCTCTTCCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKNQDFT*AALPLH
Trigger: ATGGAGGGGAAGAGCTGCCCAAGTGAAGTCCTGGTT...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGTCACTTGGACAAGAATaGCCTGCTGAGCTGCTTCTC +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKSLGQE*PAELLL
Trigger: GAGAAGCAGCTCAGCAGGTCATTCTTGTCCAAGTGA...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATCTTCTCCACTGTAAATaGTCTTGTATTTCCCATCTC +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDLLHCK*SCISHL
Trigger: GAGATGGGAAATACAAGATCATTTACAGTGGAGAAG...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCAATCCGTGGCAGGCCTaGGATCTTTCAGGTTACACT +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCNPWQA*DLSGYT
Trigger: AGTGTAACCTGAAAGATCTCAGGCCTGCCACGGATT...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACGCTTTTGGTTGTGCTaGAGGTGTAGGTTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETRFWLC*RCRFLS
Trigger: ACTCAGAAACCTACACCTTCAGCACAACCAAAAGCG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACTTCAGCTTCTTATGTaGAGGCTTGCTGTACTGGTC +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETLQLLM*RLAVLV
Trigger: GACCAGTACAGCAAGCCTCCACATAAGAAGCTGAAG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTCCAGTGTATTTTGGGTaGAAATGGCTATCGTTCTCA +
Preference number: 4 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFPVYFG*KWLSFS
Trigger: TGAGAACGATAGCCATTTCCACCCAAAATACACTGG...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCCAGTGTATTTTGGGTaGAAATGGCTATCGTTCTCA +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLPVYFG*KWLSFS
Trigger: TGAGAACGATAGCCATTTCCACCCAAAATACACTGG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCAAACCAGGACTTCACTTaGGCAGCTCTTCCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPNQDFT*AALPLH
Trigger: ATGGAGGGGAAGAGCTGCCCAAGTGAAGTCCTGGTT...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCACCTTGTAGGTGTGGCTaGGTCCTCGGTAGATTGAGA +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPPCRCG*VLGRLR
Trigger: TCTCAATCTACCGAGGACCCAGCCACACCTACAAGG...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCCAAACTGTTCGTCGGTaGGCATCATGCCCTTCATCT +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCQTVRR*ASCPSS
Trigger: AGATGAAGGGCATGATGCCCACCGACGAACAGTTTG...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATCTAAAAGGTAGCTGGTaGTTTTTGAACCATTGTCAA +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDLKGSW*FLNHCQ
Trigger: TTGACAATGGTTCAAAAATCACCAGCTACCTTTTAG...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCAAAGAAACACTGTCTaGAACCACTGTTTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLQRNTV*NHCFSF
Trigger: GAAAGAGAAACAGTGGTTTCAGACAGTGTTTCTTTG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACATGGAAGCAGTCAGCCTaGATTTATACTGTGTGCTTC +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETWKQSA*IYTVCF
Trigger: GAAGCACACAGTATAAATTCAGGCTGACTGCTTCCA...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGTTCCACACTGTATTCTaGGACCTCACAGCCACTTTC +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKFHTVF*DLTATF
Trigger: GAAAGTGGCTGTGAGGTCTCAGAATACAGTGTGGAA...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTTTTGCTTTAATGAACTaGCTAAATGGTCCAACTCCA +
Preference number: 4 (lower is better)
Translates to: RWKDELPKARALAKIDLPFALMN*LNGPTP
Trigger: TGGAGTTGGACCATTTAGTCAGTTCATTAAAGCAAA...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCAAATGACCTGCTGAGCTaGTTCTCCGTTCACCAAGTG +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPNDLLS*FSVHQV
Trigger: CACTTGGTGAACGGAGAAGCAGCTCAGCAGGTCATT...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACCCGAAAGAATGTCTTaGACCCTCTTTACTTCCAAC +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETPERMS*TLFTSN
Trigger: GTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCGGG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGTTTGTCAGTTTGCAGTaGTTCTGGCTTCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: RWIQGLLALTGIESPFDLFVSLQ*FWLPKK
Trigger: TTTCTTTGGAAGCCAGAAGCACTGCAAACTGACAAA...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGCATTGGGTGACATCATaGGAACTTCAGCAGGTCCTT +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKHWVTS*ELQQVL
Trigger: AAGGACCTGCTGAAGTTCCCATGATGTCACCCAATG...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACAGGGGGATAATTTCTaGCTCGCTATATATTGTGGG +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETQGDNF*LAIYCG
Trigger: CCCACAATATATAGCGAGCCAGAAATTATCCCCCTG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTTGTACAAAGTGCCTaGTTTCAAATGGGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: TLRWKDELPKARALAKIDFVQSA*FQMGKD
Trigger: GTCTTTACCCATTTGAAACCAGGCACTTTGTACAAA...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGCCGGTATGTCGTTTCTaGAAGGAGGTTCTTCATCAC +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKPVCRF*KEVLHH
Trigger: GTGATGAAGAACCTCCTTCCAGAAACGACATACCGG...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCATGGAGGCCTGAGATTTaGAATGTGGCTTCTTCTCCC +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPWRPEI*NVASSP
Trigger: GGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCA...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CAA 72 bp CTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTaGATTACTCATGCATGGGAAAACAGGCACAGAGAG +
Preference number: 4 (lower is better)
Translates to: LLALTGIESPFD*ITHAWENRHRE
Trigger: CTCTCTGTGCCTGTTTTCCCATGCATGAGTAATCAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAGTAGCTGGTGATTTTTaGACCATTGTCAATTGGAGC +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETVAGDF*TIVNWS
Trigger: GCTCCAATTGACAATGGTTCAAAAATCACCAGCTAC...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCACTGTGTGCTTCGCTTaGGATTTTTCACAGTACAGG +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCTVCFA*DFSQYR
Trigger: CCTGTACTGTGAAAAATCTCAAGCGAAGCACACAGT...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCGACACTGAAGCCATGTaGTGTGACAGGTCCTTTAAT +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCDTEAM*CDRSFN
Trigger: ATTAAAGGACCTGTCACATCACATGGCTTCAGTGTC...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCACAGCACAACTGCTCTTaGCTGGATATTAGACACCTG +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPQHNCS*LDIRHL
Trigger: CAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTG...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCTTTGTCAGTTTGCAGTaGTTCTGGCTTCCAAAGAAA +
Preference number: 4 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSFVSLQ*FWLPKK
Trigger: TTTCTTTGGAAGCCAGAAGCACTGCAAACTGACAAA...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGAGAGCTTTGTCAGTTTaGAGTGCTTCTGGCTTCCAA +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKRALSV*SASGFQ
Trigger: TTGGAAGCCAGAAGCACTGCAAACTGACAAAGCTCT...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCAAGTGGACTCCTTTGTaGTTTGGTCTACCCAAAACC +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCKWTPL*FGLPKT
Trigger: GGTTTTGGGTAGACCAAAGCACAAAGGAGTCCACTT...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR GCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCACCTGTAATCTGTGTTaGTCTGGAGGCCTGAGATTT +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCTCNLC*SGGLRF
Trigger: AAATCTCAGGCCTCCAGAGCAACACAGATTACAGGT...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGGTAGCTGGTGATTTTTaGACCATTGTCAATTGGAGC +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKVAGDF*TIVNWS
Trigger: GCTCCAATTGACAATGGTTCAAAAATCACCAGCTAC...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACAAAGAAACACTGTCTaGAACCACTGTTTCTCTTTC +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETQRNTV*NHCFSF
Trigger: GAAAGAGAAACAGTGGTTTCAGACAGTGTTTCTTTG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCCTCTCCAGTGTATTTTaGGTGGAAATGGCTATCGTT +
Preference number: 4 (lower is better)
Translates to: NVNGSLVVGFISKISIYCLSSVF*VEMAIV
Trigger: AACGATAGCCATTTCCACCCAAAATACACTGGAGAG...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAGTGCCTGGTTTCAAATaGGTAAAGACATACTCTGTA +
Preference number: 4 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETVPGFK*VKTYSV
Trigger: TACAGAGTATGTCTTTACCCATTTGAAACCAGGCAC...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCAAGTTTGCAGTGCTTCTaGCTTCCAAAGAAACACTGT +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPSLQCF*LPKKHC
Trigger: ACAGTGTTTCTTTGGAAGCCAGAAGCACTGCAAACT...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
3UTR CAA 72 bp TCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTaGATACCATCAGTGTACACGTCTAATTACACTAAT +
Preference number: 4 (lower is better)
Translates to: SEGQSFGKNRFT*IPSVYTSNYTN
Trigger: ATTAGTGTAATTAGACGTGTACACTGATGGTATCAAGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCACTTCTCCACTGTAAATaGTCTTGTATTTCCCATCTC +
Preference number: 4 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPLLHCK*SCISHL
Trigger: GAGATGGGAAATACAAGATCATTTACAGTGGAGAAG...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGCTAAAAGGTAGCTGGTaGTTTTTGAACCATTGTCAA +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKLKGSW*FLNHCQ
Trigger: TTGACAATGGTTCAAAAATCACCAGCTACCTTTTAG...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR TCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGTTTGCTTTAATGAACTaGCTAAATGGTCCAACTCCA +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKFALMN*LNGPTP
Trigger: TGGAGTTGGACCATTTAGTCAGTTCATTAAAGCAAA...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CCA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGTTTGTACAAAGTGCCTaGTTTCAAATGGGTAAAGAC +
Preference number: 4 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKFVQSA*FQMGKD
Trigger: GTCTTTACCCATTTGAAACCAGGCACTTTGTACAAA...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp TGTAACATGAAAGCCGCAGAGGGGCTGAACGCGCCACTGAGCTCCTaGGACGTGTCCACACAGCGGCGGCAGGCACACACGCGGAACCTG +
Preference number: 5 (lower is better)
Translates to: CNMKAAEGLNAPLSS*DVSTQRRQAHTRNL
Trigger: CAGGTTCCGCGTGTGTGCCTGCCGCCGCTGTGTGGACACGTCTCAGGAGCTCAGTGGCGCGTTCAGCCCCTCTGCGGCTTTCATGTTACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 90 bp AGGACGCATCCGTCAGGCGTGAAGGAGACACGCGGTGCTCTGCACTaGCCAGGGGGCCCTGCGGCAGTGGTGATTTCTGACACATCAGAG +
Preference number: 5 (lower is better)
Translates to: RTHPSGVKETRGALH*PGGPAAVVISDTSE
Trigger: CTCTGATGTGTCAGAAATCACCACTGCCGCAGGGCCCCCTGGGCAGTGCAGAGCACCGCGTGTCTCCTTCACGCCTGACGGATGCGTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp CTCCTCCAGGACACACAGAGTGGAGACAGGGTCGGGGGCAGAGGCTaGTGTCTGGCAGTGGACAAGCTCACTATATGGCCCTGCGCCTGC +
Preference number: 5 (lower is better)
Translates to: LLQDTQSGDRVGGRG*CLAVDKLTIWPCAC
Trigger: GCAGGCGCAGGGCCATATAGTGAGCTTGTCCACTGCCAGACACCAGCCTCTGCCCCCGACCCTGTCTCCACTCTGTGTGTCCTGGAGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp CGGTGCTCTGCACTGCCCAGGGGGCCCTGCGGCAGTGGTGATTTCTaGCACATCAGAGTAGGGACCGTACCCTCCGTCATTCAGAGCTCG +
Preference number: 5 (lower is better)
Translates to: RCSALPRGPCGSGDF*HIRVGTVPSVIQSS
Trigger: CGAGCTCTGAATGACGGAGGGTACGGTCCCTACTCTGATGTGTCAGAAATCACCACTGCCGCAGGGCCCCCTGGGCAGTGCAGAGCACCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp TGGCTGAGGGATAACTCGGTGGGTAGCACTCAGGAGACTGCGGTGTaGCCACCACCCGGCGGACTCCGGTGCTGTCTTCAATCACCTGTG +
Preference number: 5 (lower is better)
Translates to: WLRDNSVGSTQETAV*PPPGGLRCCLQSPV
Trigger: CACAGGTGATTGAAGACAGCACCGGAGTCCGCCGGGTGGTGGTCACACCGCAGTCTCCTGAGTGCTACCCACCGAGTTATCCCTCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp AGACACGCGGTGCTCTGCACTGCCCAGGGGGCCCTGCGGCAGTGGTaGTTTCTGACACATCAGAGTAGGGACCGTACCCTCCGTCATTCA +
Preference number: 5 (lower is better)
Translates to: RHAVLCTAQGALRQW*FLTHQSRDRTLRHS
Trigger: TGAATGACGGAGGGTACGGTCCCTACTCTGATGTGTCAGAAATCACCACTGCCGCAGGGCCCCCTGGGCAGTGCAGAGCACCGCGTGTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 90 bp CCAAAACCCTCGGTGGTCGGCACTGACCTGGTGCAAGGCTTAGTGTaGGGACAGGGAGACTTTCAGAACACTGACTGTGCCCACCGGTAC +
Preference number: 5 (lower is better)
Translates to: PKPSVVGTDLVQGLV*GQGDFQNTDCAHRY
Trigger: GTACCGGTGGGCACAGTCAGTGTTCTGAAAGTCTCCCTGTCCGCACACTAAGCCTTGCACCAGGTCAGTGCCGACCACCGAGGGTTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp GTGGATGGTGGGTCAGATAAGGGGGCAGGTGATGGGTTGGAGACATaGCTGAGGGATAACTCGGTGGGTAGCACTCAGGAGACTGCGGTG +
Preference number: 5 (lower is better)
Translates to: VDGGSDKGAGDGLET*LRDNSVGSTQETAV
Trigger: CACCGCAGTCTCCTGAGTGCTACCCACCGAGTTATCCCTCAGCCATGTCTCCAACCCATCACCTGCCCCCTTATCTGACCCACCATCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp GGTGACGGGCGGGTAGTAGGCGGTGTGCGAGTTCTGGATGAAGTGTaGATGGTGGGTCAGATAAGGGGGCAGGTGATGGGTTGGAGACAT +
Preference number: 5 (lower is better)
Translates to: GDGRVVGGVRVLDEV*MVGQIRGQVMGWRH
Trigger: ATGTCTCCAACCCATCACCTGCCCCCTTATCTGACCCACCATCCACACTTCATCCAGAACTCGCACACCGCCTACTACCCGCCCGTCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp GCCATTGTACACTGTGGCGCAGCTGTTCTTGTAGATGGTGGAAGGTaGGCTGTTGAGGCGGTTCTGGCGGTCGATCTGGCGGTCCTTCAG +
Preference number: 5 (lower is better)
Translates to: AIVHCGAAVLVDGGR*AVEAVLAVDLAVLQ
Trigger: CTGAAGGACCGCCAGATCGACCGCCAGAACCGCCTCAACAGCCCACCTTCCACCATCTACAAGAACAGCTGCGCCACAGTGTACAATGGC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp CTGTGTGCCAGCTTGGGAGGGAAGGGACATTCTGGTGCGCAGCTATaGGTGGTGAAGCTGACTGGCTCGGAGCAGGATCCCTTGACAGAA +
Preference number: 5 (lower is better)
Translates to: LCASLGGKGHSGAQL*VVKLTGSEQDPLTE
Trigger: TTCTGTCAAGGGATCCTGCTCCGAGCCAGTCAGCTTCACCACCCATAGCTGCGCACCAGAATGTCCCTTCCCTCCCAAGCTGGCACACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp GTTCCAGGCAGCAGGTTGCCAACCGTGCACTCCAGCTCAGGCCCATaGTACACCTCTGAGGCGACATTCTCGGGTTCCGTCATTTCCACA +
Preference number: 5 (lower is better)
Translates to: VPGSRLPTVHSSSGP*YTSEATFSGSVIST
Trigger: TGTGGAAATGACGGAACCCGAGAATGTCGCCTCAGAGGTGTACCATGGGCCTGAGCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp ATGGTGGGTCAGATAAGGGGGCAGGTGATGGGTTGGAGACATGGCTaGGGGATAACTCGGTGGGTAGCACTCAGGAGACTGCGGTGTGAC +
Preference number: 5 (lower is better)
Translates to: MVGQIRGQVMGWRHG*GITRWVALRRLRCD
Trigger: GTCACACCGCAGTCTCCTGAGTGCTACCCACCGAGTTATCCCTCAGCCATGTCTCCAACCCATCACCTGCCCCCTTATCTGACCCACCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp CATCAGAGTAGGGACCGTACCCTCCGTCATTCAGAGCTCGCACTCTaGAGCGGTACACAGTTCCAGGCAGCAGGTTGCCAACCGTGCACT +
Preference number: 5 (lower is better)
Translates to: HQSRDRTLRHSELAL*SGTQFQAAGCQPCT
Trigger: AGTGCACGGTTGGCAACCTGCTGCCTGGAACTGTGTACCGCTTCAGAGTGCGAGCTCTGAATGACGGAGGGTACGGTCCCTACTCTGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp GCATGTGTCTTGGAGTTACTGTCTCCCCACTTGAGCTTCAGGCTCTaGGGACCAGACGCAGCACACTCAAGCCTAGGAGGCGAAGGCGGT +
Preference number: 5 (lower is better)
Translates to: ACVLELLSPHLSFRL*GPDAAHSSLGGEGG
Trigger: ACCGCCTTCGCCTCCTAGGCTTGAGTGTGCTGCGTCTGGTCCTCAGAGCCTGAAGCTCAAGTGGGGAGACAGTAACTCCAAGACACATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp GAGGCGGTTCTGGCGGTCGATCTGGCGGTCCTTCAGCTTCTTATGTaGAGGCTTGCTGTACTGGTCTTCTCGGGTGACGTAGCTCGACAT +
Preference number: 5 (lower is better)
Translates to: EAVLAVDLAVLQLLM*RLAVLVFSGDVARH
Trigger: ATGTCGAGCTACGTCACCCGAGAAGACCAGTACAGCAAGCCTCCACATAAGAAGCTGAAGGACCGCCAGATCGACCGCCAGAACCGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCCTTCGCTCTGTCTTCTaGATCCCAGGTCCACCGCCG +
Preference number: 5 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSLRSVF*IPGPPP
Trigger: CGGCGGTGGACCTGGGATCAAGAAGACAGAGCGAAG...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp ACACTGTGGCGCAGCTGTTCTTGTAGATGGTGGAAGGTGGGCTGTTaGGGCGGTTCTGGCGGTCGATCTGGCGGTCCTTCAGCTTCTTAT +
Preference number: 5 (lower is better)
Translates to: TLWRSCSCRWWKVGC*GGSGGRSGGPSASY
Trigger: ATAAGAAGCTGAAGGACCGCCAGATCGACCGCCAGAACCGCCTCAACAGCCCACCTTCCACCATCTACAAGAACAGCTGCGCCACAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 90 bp GAAGGAAAGACCACCATGGGGTCCACAGGACAGTCCGACAGGGGGTaGCCAAGACAGCACAACTGCTCTTGCCTGGATATTAGACACCTG +
Preference number: 5 (lower is better)
Translates to: EGKTTMGSTGQSDRG*PRQHNCSCLDIRHL
Trigger: CAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTGTCTTGGGCACCCCCTGTCGGACTGTCCTGTGGACCCCATGGTGGTCTTTCCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS GCA 90 bp CCACACAGCGGCGGCAGGCACACACGCGGAACCTGTAATCTGTGTTaGTCTGGAGGCCTGAGATTTGGAATGTGGCTTCTTCTCCCTTGT +
Preference number: 5 (lower is better)
Translates to: PHSGGRHTRGTCNLC*SGGLRFGMWLLLPC
Trigger: ACAAGGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCAGAGCAACACAGATTACAGGTTCCGCGTGTGTGCCTGCCGCCGCTGTGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAGTGGAAGGTGGGCTGTaGAGGCGGTTCTGGCGGTCG +
Preference number: 5 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAVEGGL*RRFWRS
Trigger: CGACCGCCAGAACCGCCTCAACAGCCCACCTTCCAC...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 90 bp GGGTCCACAGGACAGTCCGACAGGGGGTGCCCAAGACAGCACAACTaGTCTTGCCTGGATATTAGACACCTGTGGTTTCTCTATTCCCGA +
Preference number: 5 (lower is better)
Translates to: GSTGQSDRGCPRQHN*SCLDIRHLWFLYSR
Trigger: TCGGGAATAGAGAAACCACAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTGTCTTGGGCACCCCCTGTCGGACTGTCCTGTGGACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS CCA 90 bp AGGGCCAGGTCTGTCGGGGCTGGTTGTACAAACCAGGACTTCACTTaGGCAGCTCTTCCCCTCCATGTTGGAAGCAGTCAGCCTGAATTT +
Preference number: 5 (lower is better)
Translates to: RARSVGAGCTNQDFT*AALPLHVGSSQPEF
Trigger: AAATTCAGGCTGACTGCTTCCAACATGGAGGGGAAGAGCTGCCCAAGTGAAGTCCTGGTTTGTACAACCAGCCCCGACAGACCTGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCATCATGCCCTTCATCTaGGCCTCTTCCATGCCTCCC +
Preference number: 5 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSIMPFI*ASSMPP
Trigger: GGGAGGCATGGAAGAGGCCAAGATGAAGGGCATGAT...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp ACTCCTTTGTGCTTTGGTCTACCCAAAACCCTCGGTGGTCGGCACTaGCCTGGTGCAAGGCTTAGTGTGCGGACAGGGAGACTTTCAGAA +
Preference number: 5 (lower is better)
Translates to: TPLCFGLPKTLGGRH*PGARLSVRTGRLSE
Trigger: TTCTGAAAGTCTCCCTGTCCGCACACTAAGCCTTGCACCAGGTCAGTGCCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp TCTGGCAGTGGACAAGCTCACTATATGGCCCTGCGCCTGCTGGATTaGAGGCCTGTAGTCTGCAGCAATACTGTGCAGCAGGCAACAGAT +
Preference number: 5 (lower is better)
Translates to: SGSGQAHYMALRLLD*RPVVCSNTVQQATD
Trigger: ATCTGTTGCCTGCTGCACAGTATTGCTGCAGACTACAGGCCTTCAATCCAGCAGGCGCAGGGCCATATAGTGAGCTTGTCCACTGCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp AGGGAAGGGACATTCTGGTGCGCAGCTATGGGTGGTGAAGCTGACTaGCTCGGAGCAGGATCCCTTGACAGAATTGTACACGGCATATAC +
Preference number: 5 (lower is better)
Translates to: REGTFWCAAMGGEAD*LGAGSLDRIVHGIY
Trigger: GTATATGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCGAGCCAGTCAGCTTCACCACCCATAGCTGCGCACCAGAATGTCCCTTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCGGAGGAATGGACCCATaGGGTGACATCATGGGAACT +
Preference number: 5 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSGGMDP*GDIMGT
Trigger: AGTTCCCATGATGTCACCCAATGGGTCCATTCCTCC...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTCTTTGGCCCCCAAACATCTCATGCTCACAGCCAGTTTCCACTCCCTCTCTCCCAGCACGCTCGCAGTTaGTACAAAGTGCCTGGTTTC +
Preference number: 5 (lower is better)
Translates to: LFGPQTSHAHSQFPLPLSQHARS*YKVPGF
Trigger: GAAACCAGGCACTTTGTACAAACTGCGAGCGTGCTG...GGAGAGAGGGAGTGGAAACTGGCTGTGAGCATGAGATGTTTGGGGGCCAAAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp CACTGTAGGCCACTTCCCACTGCCCAGCTTCAGAAGTTCCATCCGTaGTCTCCAGCAGATACTTCAGGATTTCTGAGCCACCGTTGTCCT +
Preference number: 5 (lower is better)
Translates to: HCRPLPTAQLQKFHP*SPADTSGFLSHRCP
Trigger: AGGACAACGGTGGCTCAGAAATCCTGAAGTATCTGCTGGAGATCACGGATGGAACTTCTGAAGCTGGGCAGTGGGAAGTGGCCTACAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 90 bp GGTGGTACCGTCTCCCAGAAGATTTCACAGGAATTCCCTTCTAACTaGGTCACTCGAGGTGCTTTGAGGGTGGGAGGCACGCTTTTGGTT +
Preference number: 5 (lower is better)
Translates to: GGTVSQKISQEFPSN*VTRGALRVGGTLLV
Trigger: AACCAAAAGCGTGCCTCCCACCCTCAAAGCACCTCGAGTGACGCAGTTAGAAGGGAATTCCTGTGAAATCTTCTGGGAGACGGTACCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 90 bp AAAGGCAAACAAAATGGACAGGGTCGCGAAGCCAAGCACGATGAGTaGAGCAAACTGTTCGTCGGTGGGCATCATGCCCTTCATCTTGGC +
Preference number: 5 (lower is better)
Translates to: KGKQNGQGREAKHDE*SKLFVGGHHALHLG
Trigger: GCCAAGATGAAGGGCATGATGCCCACCGACGAACAGTTTGCTGCACTCATCGTGCTTGGCTTCGCGACCCTGTCCATTTTGTTTGCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp GCACTGAAGTGTCCCATCCTCGGCTCTGATGGTAAAGGTCTCACCTaGGTTCACTTGGACAAGAATGACCTGCTGAGCTGCTTCTCCGTT +
Preference number: 5 (lower is better)
Translates to: ALKCPILGSDGKGLT*VHLDKNDLLSCFSV
Trigger: AACGGAGAAGCAGCTCAGCAGGTCATTCTTGTCCAAGTGAACCCAGGTGAGACCTTTACCATCAGAGCCGAGGATGGGACACTTCAGTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTGTGGAAGGTGGGCTGTaGAGGCGGTTCTGGCGGTCG +
Preference number: 5 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFVEGGL*RRFWRS
Trigger: CGACCGCCAGAACCGCCTCAACAGCCCACCTTCCAC...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCACTCCTGTGTGCCAGCTaGGGAGGGAAGGGACATTCT +
Preference number: 5 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDALLCAS*GGKGHS
Trigger: AGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGAG...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTGTTCCAGGCAGCAGGTaGCCAACCGTGCACTCCAGC +
Preference number: 5 (lower is better)
Translates to: RWKDELPKARALAKIDLPVPGSR*PTVHSS
Trigger: GCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAAC...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAAAACCAGGACTTCACTaGGGCAGCTCTTCCCCTCCA +
Preference number: 5 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAKPGLH*GSSSPP
Trigger: TGGAGGGGAAGAGCTGCCCAAGTGAAGTCCTGGTTT...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTGTTCCAGGCAGCAGGTaGCCAACCGTGCACTCCAGC +
Preference number: 5 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFVPGSR*PTVHSS
Trigger: GCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAAC...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAATCATGCCCTTCATCTaGGCCTCTTCCATGCCTCCC +
Preference number: 5 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDAIMPFI*ASSMPP
Trigger: GGGAGGCATGGAAGAGGCCAAGATGAAGGGCATGAT...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCTTCGCTCTGTCTTCTaGATCCCAGGTCCACCGCCG +
Preference number: 5 (lower is better)
Translates to: RWIQGLLALTGIESPFDLLRSVF*IPGPPP
Trigger: CGGCGGTGGACCTGGGATCAAGAAGACAGAGCGAAG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TTCAGATGCCTGGAATTTCCTGTGTCAGGGATGCATGTGACACACAGAGACGCAACGTGTGTGGTAGTGTaGCCCACAGTAATGCAGCTG +
Preference number: 5 (lower is better)
Translates to: FRCLEFPVSGMHVTHRDATCVVV*PTVMQL
Trigger: CAGCTGCATTACTGTGGGCAACACTACCACACACGT...TGCGTCTCTGTGTGTCACATGCATCCCTGACACAGGAAATTCCAGGCATCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp GATATAACCTGGAGGCACATGGATAGGAGGAATGGACCCATTGGGTaGCATCATGGGAACTTCAGCAGGTCCTTGGATGCACTGAAGTGT +
Preference number: 5 (lower is better)
Translates to: DITWRHMDRRNGPIG*HHGNFSRSLDALKC
Trigger: ACACTTCAGTGCATCCAAGGACCTGCTGAAGTTCCCATGATGTCACCCAATGGGTCCATTCCTCCTATCCATGTGCCTCCAGGTTATATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp TTCTCGGGTGACGTAGCTCGACATTCCATACAGGGGGATAATTTCTaGCTCGCTATATATTGTGGGAGGAAGGTGAGGCTGGGGGAAAAA +
Preference number: 5 (lower is better)
Translates to: FSGDVARHSIQGDNF*LAIYCGRKVRLGEK
Trigger: TTTTTCCCCCAGCCTCACCTTCCTCCCACAATATATAGCGAGCCAGAAATTATCCCCCTGTATGGAATGTCGAGCTACGTCACCCGAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp CTTTACTTCCAACTCATACTCTTGCAGGTCAGAATCACTGGATTTTaGGCTGCTCCTCGCTCTTCGCTCTGTCTTCTTGATCCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: LYFQLILLQVRITGF*AAPRSSLCLLDPRS
Trigger: GGACCTGGGATCAAGAAGACAGAGCGAAGAGCGAGGAGCAGCCCAAAATCCAGTGATTCTGACCTGCAAGAGTATGAGTTGGAAGTAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp CCCACCGGTACTGATGCAGCACGCTCGCAGTTTGTACAAAGTGCCTaGTTTCAAATGGGTAAAGACATACTCTGTAGCCGATCCACTGTA +
Preference number: 5 (lower is better)
Translates to: PTGTDAARSQFVQSA*FQMGKDILCSRSTV
Trigger: TACAGTGGATCGGCTACAGAGTATGTCTTTACCCATTTGAAACCAGGCACTTTGTACAAACTGCGAGCGTGCTGCATCAGTACCGGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCCAGCAGCATGTGTCTaGGAGTTACTGTCTCCCCAC +
Preference number: 5 (lower is better)
Translates to: RWKDELPKARALAKIDLPPAACV*ELLSPH
Trigger: GTGGGGAGACAGTAACTCCAAGACACATGCTGCTGG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGGCTGTGTCTGTCGCACCCTTTTGGAATACAGTTGCACCTCCAACTCTTAAGTGTGGCTTCTTCTCCCTaGTACACCTGCTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: RLCLSHPFGIQLHLQLLSVASSP*YTCLYS
Trigger: TGAGTACAAGCAGGTGTACAAGGGAGAAGAAGCCAC...ACTTAAGAGTTGGAGGTGCAACTGTATTCCAAAAGGGTGCGACAGACACAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 90 bp GGAACCTGTAATCTGTGTTGCTCTGGAGGCCTGAGATTTGGAATGTaGCTTCTTCTCCCTTGTACACCTGCTTGTACTCAGAGTCTCTTC +
Preference number: 5 (lower is better)
Translates to: GTCNLCCSGGLRFGM*LLLPCTPACTQSLF
Trigger: GAAGAGACTCTGAGTACAAGCAGGTGTACAAGGGAGAAGAAGCCACATTCCAAATCTCAGGCCTCCAGAGCAACACAGATTACAGGTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCATGGCCACCTCCCCATaGAGCAGAGGTGGCAATTCC +
Preference number: 5 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSMATSP*SRGGNS
Trigger: GGAATTGCCACCTCTGCTCAATGGGGAGGTGGCCAT...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGGAGGAATGGACCCATaGGGTGACATCATGGGAACT +
Preference number: 5 (lower is better)
Translates to: TLRWKDELPKARALAKIDGGMDP*GDIMGT
Trigger: AGTTCCCATGATGTCACCCAATGGGTCCATTCCTCC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTCTGGCTCGCTATATATaGTGGGAGGAAGGTGAGGCT +
Preference number: 5 (lower is better)
Translates to: RWKDELPKARALAKIDLPLARYI*WEEGEA
Trigger: AGCCTCACCTTCCTCCCACAATATATAGCGAGCCAG...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATCTCTTCCCCTCCATGTaGGAAGCAGTCAGCCTGAAT +
Preference number: 5 (lower is better)
Translates to: TLRWKDELPKARALAKIDLFPSM*EAVSLN
Trigger: ATTCAGGCTGACTGCTTCCAACATGGAGGGGAAGAG...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGGACTCCTTTGTGCTTaGGTCTACCCAAAACCCTCG +
Preference number: 5 (lower is better)
Translates to: TLRWKDELPKARALAKIDGLLCA*VYPKPS
Trigger: CGAGGGTTTTGGGTAGACCAAAGCACAAAGGAGTCC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACTCCTGTGTGCCAGCTaGGGAGGGAAGGGACATTCT +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETLLCAS*GGKGHS
Trigger: AGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGAG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATTTACCTAGGGTAAGTGAACTTTaGCTCCTGTGTGCCAGCTTG +
Preference number: 5 (lower is better)
Translates to: RWKDELPKARALAKIDLPRVSEL*LLCASL
Trigger: CAAGCTGGCACACAGGAGCAAAAGTTCACTTACCCT...AGGTAAATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCCCAGCAGCATGTGTCTaGGAGTTACTGTCTCCCCAC +
Preference number: 5 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSPAACV*ELLSPH
Trigger: GTGGGGAGACAGTAACTCCAAGACACATGCTGCTGG...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGATGGCCACCTCCCCATaGAGCAGAGGTGGCAATTCC +
Preference number: 5 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKMATSP*SRGGNS
Trigger: GGAATTGCCACCTCTGCTCAATGGGGAGGTGGCCAT...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTAGGGTAAGTGAACTTTaGCTCCTGTGTGCCAGCTTG +
Preference number: 5 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFRVSEL*LLCASL
Trigger: CAAGCTGGCACACAGGAGCAAAAGTTCACTTACCCT...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGGTGGCTTCTTCTCCCTaGTACACCTGCTTGTACTCA +
Preference number: 5 (lower is better)
Translates to: RWIQGLLALTGIESPFDLVASSP*YTCLYS
Trigger: TGAGTACAAGCAGGTGTACAAGGGAGAAGAAGCCAC...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCTTCTTATGTGGAGGCTaGCTGTACTGGTCTTCTCGG +
Preference number: 5 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSFLCGG*LYWSSR
Trigger: CCGAGAAGACCAGTACAGCAAGCCTCCACATAAGAA...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGCCTCTCCAGTGTATTTaGGGTGGAAATGGCTATCGT +
Preference number: 5 (lower is better)
Translates to: RWIQGLLALTGIESPFDLPLQCI*GGNGYR
Trigger: ACGATAGCCATTTCCACCCAAAATACACTGGAGAGG...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCAAACCAGGACTTCACTaGGGCAGCTCTTCCCCTCCA +
Preference number: 5 (lower is better)
Translates to: NVNGSLVVGFISKISIYCKPGLH*GSSSPP
Trigger: TGGAGGGGAAGAGCTGCCCAAGTGAAGTCCTGGTTT...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACAGCACGCTCGCAGTTaGTACAAAGTGCCTGGTTTC +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETQHARS*YKVPGF
Trigger: GAAACCAGGCACTTTGTACAAACTGCGAGCGTGCTG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAGGACTCCTTTGTGCTTaGGTCTACCCAAAACCCTCG +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETGLLCA*VYPKPS
Trigger: CGAGGGTTTTGGGTAGACCAAAGCACAAAGGAGTCC...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 90 bp GCTTTGTCAGTTTGCAGTGCTTCTGGCTTCCAAAGAAACACTGTCTaGAACCACTGTTTCTCTTTCCCTCATCCCATTCTAAAAGGTAGC +
Preference number: 5 (lower is better)
Translates to: ALSVCSASGFQRNTV*NHCFSFPHPILKGS
Trigger: GCTACCTTTTAGAATGGGATGAGGGAAAGAGAAACAGTGGTTTCAGACAGTGTTTCTTTGGAAGCCAGAAGCACTGCAAACTGACAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACATTCTTATGTGGAGGCTaGCTGTACTGGTCTTCTCGG +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETFLCGG*LYWSSR
Trigger: CCGAGAAGACCAGTACAGCAAGCCTCCACATAAGAA...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGTCGGAGCAGGATCCCTaGACAGAATTGTACACGGCA +
Preference number: 5 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKSEQDP*TELYTA
Trigger: TGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCGA...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp ACACTTCGATGGAAGGATGAGCTTCCGAAGGCCAGAGCTTTGGCAAAAATAGATGTGATTTTTGAACCATaGTCAATTGGAGCCTTCCAC +
Preference number: 5 (lower is better)
Translates to: TLRWKDELPKARALAKIDVIFEP*SIGAFH
Trigger: GTGGAAGGCTCCAATTGACAATGGTTCAAAAATCAC...ATCTATTTTTGCCAAAGCTCTGGCCTTCGGAAGCTCATCCTTCCATCGAAGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACAGAGCTTTGTCAGTTaGCAGTGCTTCTGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETQSFVS*QCFWLP
Trigger: TGGAAGCCAGAAGCACTGCAAACTGACAAAGCTCTG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACATGGCTGGACAGAGCTTaGTCAGTTTGCAGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETWLDRA*SVCSAS
Trigger: AGAAGCACTGCAAACTGACAAAGCTCTGTCCAGCCA...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AATGTAAATGGTTCCCTTGTGGTGGGCTTTATCAGTAAGATTTCTATCTACTGCCTCTTCCCCTCCATGTaGGAAGCAGTCAGCCTGAAT +
Preference number: 5 (lower is better)
Translates to: NVNGSLVVGFISKISIYCLFPSM*EAVSLN
Trigger: ATTCAGGCTGACTGCTTCCAACATGGAGGGGAAGAG...GCAGTAGATAGAAATCTTACTGATAAAGCCCACCACAAGGGAACCATTTACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CGGTGGATCCAAGGTCTCTTAGCACTTACAGGTATTGAATCCCCATTTGATTTGTCTAAGTGGACTCCTTaGTGCTTTGGTCTACCCAAA +
Preference number: 5 (lower is better)
Translates to: RWIQGLLALTGIESPFDLSKWTP*CFGLPK
Trigger: TTTGGGTAGACCAAAGCACAAAGGAGTCCACTTAGA...CAAATCAAATGGGGATTCAATACCTGTAAGTGCTAAGAGACCTTGGATCCACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCATCGGAGCAGGATCCCTaGACAGAATTGTACACGGCA +
Preference number: 5 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPSEQDP*TELYTA
Trigger: TGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCGA...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTGTGATTTTTGAACCATaGTCAATTGGAGCCTTCCAC +
Preference number: 5 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFVIFEP*SIGAFH
Trigger: GTGGAAGGCTCCAATTGACAATGGTTCAAAAATCAC...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGCAGAGCTTTGTCAGTTaGCAGTGCTTCTGGCTTCCA +
Preference number: 5 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKQSFVS*QCFWLP
Trigger: TGGAAGCCAGAAGCACTGCAAACTGACAAAGCTCTG...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACACCTCTCCAGTGTATTTaGGGTGGAAATGGCTATCGT +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETPLQCI*GGNGYR
Trigger: ACGATAGCCATTTCCACCCAAAATACACTGGAGAGG...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGGTCACAAAGCAAATTAGTGACAGACCCAGGGAGAGAATCTAGTAGGCTCTTTTACTGTGTGCTTCGCTaGAGATTTTTCACAGTACAG +
Preference number: 5 (lower is better)
Translates to: RSQSKLVTDPGRESSRLFYCVLR*RFFTVQ
Trigger: CTGTACTGTGAAAAATCTCAAGCGAAGCACACAGTA...AAAGAGCCTACTAGATTCTCTCCCTGGGTCTGTCACTAATTTGCTTTGTGACCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp AGAATAGCCAAAGGCAAGTCTTTCAAATATGATGGGCCAACATGTAAGGAGACAATTTCAGACCCATTATaGCACGGCTCTTCCCAGTTC +
Preference number: 5 (lower is better)
Translates to: RIAKGKSFKYDGPTCKETISDPL*HGSSQF
Trigger: GAACTGGGAAGAGCCGTGCAATAATGGGTCTGAAAT...TGTCTCCTTACATGTTGGCCCATCATATTTGAAAGACTTGCCTTTGGCTATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCATGGCTGGACAGAGCTTaGTCAGTTTGCAGTGCTTCT +
Preference number: 5 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPWLDRA*SVCSAS
Trigger: AGAAGCACTGCAAACTGACAAAGCTCTGTCCAGCCA...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp CTAGTACAGGGTACTTACTGCATCATAGACAACATAGACCAAGCACAAAGTAGCTACTGTGTGCTTCGCTaGAGATTTTTCACAGTACAG +
Preference number: 5 (lower is better)
Translates to: LVQGTYCIIDNIDQAQSSYCVLR*RFFTVQ
Trigger: CTGTACTGTGAAAAATCTCAAGCGAAGCACACAGTA...GCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCAGTAAGTACCCTGTACTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGTCCCGAAAGAATGTCTaGCACCCTCTTTACTTCCAA +
Preference number: 5 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKSRKNV*HPLYFQ
Trigger: TTGGAAGTAAAGAGGGTGCAAGACATTCTTTCGGGA...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TCCTTTGTAACAATTCAACAATTCAGGGAATTCTTTACAGCAGCAGTGCTGAAGTCTAAGTGGACTCCTTaGTGCTTTGGTCTACCCAAA +
Preference number: 5 (lower is better)
Translates to: SFVTIQQFREFFTAAVLKSKWTP*CFGLPK
Trigger: TTTGGGTAGACCAAAGCACAAAGGAGTCCACTTAGA...CTTCAGCACTGCTGCTGTAAAGAATTCCCTGAATTGTTGAATTGTTACAAAGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS-3UTR CAA 90 bp TGCATCATAGACAACATAGACCAAGCACAAAGTAGCTATGATCAAGAAAAACCAATTTCAGACCCATTATaGCACGGCTCTTCCCAGTTC +
Preference number: 5 (lower is better)
Translates to: CIIDNIDQAQSSYDQEKPISDPL*HGSSQF
Trigger: GAACTGGGAAGAGCCGTGCAATAATGGGTCTGAAAT...TGGTTTTTCTTGATCATAGCTACTTTGTGCTTGGTCTATGTTGTCTATGATGCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp GGCTCTCCCAGCCCACCAGGACGCATCCGTCAGGCGTaGAGGAGACACGCGGTGCTCTGCACTGCCCAGGGG +
Preference number: 6 (lower is better)
Translates to: GSPSPPGRIRQA*RRHAVLCTAQG
Trigger: CCCCTGGGCAGTGCAGAGCACCGCGTGTCTCCTTCACGCCTGACGGATGCGTCCTGGTGGGCTGGGAGAGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 72 bp CAGGACGCATCCGTCAGGCGTGAAGGAGACACGCGGTaGTCTGCACTGCCCAGGGGGCCCTGCGGCAGTGGT +
Preference number: 6 (lower is better)
Translates to: QDASVRREGDTR*SALPRGPCGSG
Trigger: ACCACTGCCGCAGGGCCCCCTGGGCAGTGCAGAGCACCGCGTGTCTCCTTCACGCCTGACGGATGCGTCCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp AAAGCCGCAGAGGGGCTGAACGCGCCACTGAGCTCCTaGGACGTGTCCACACAGCGGCGGCAGGCACACACG +
Preference number: 6 (lower is better)
Translates to: KAAEGLNAPLSS*DVSTQRRQAHT
Trigger: CGTGTGTGCCTGCCGCCGCTGTGTGGACACGTCTCAGGAGCTCAGTGGCGCGTTCAGCCCCTCTGCGGCTTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 72 bp ACTTCCTCAGGCGAGCAGCCTTCTGGCCTGCTCCACTaGAGGGTGATCCAGGTGACGCCGGCTCGGACAAGC +
Preference number: 6 (lower is better)
Translates to: TSSGEQPSGLLH*RVIQVTPARTS
Trigger: GCTTGTCCGAGCCGGCGTCACCTGGATCACCCTGCAGTGGAGCAGGCCAGAAGGCTGCTCGCCTGAGGAAGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 72 bp GGTGATCCAGGTGACGCCGGCTCGGACAAGCCGGGGTaGCAAGGGCATCTGCGGGATGTTTCCCAACGTGTA +
Preference number: 6 (lower is better)
Translates to: GDPGDAGSDKPG*QGHLRDVSQRV
Trigger: TACACGTTGGGAAACATCCCGCAGATGCCCTTGGCACCCCGGCTTGTCCGAGCCGGCGTCACCTGGATCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp GTGCTCTGCACTGCCCAGGGGGCCCTGCGGCAGTGGTaGTTTCTGACACATCAGAGTAGGGACCGTACCCTC +
Preference number: 6 (lower is better)
Translates to: VLCTAQGALRQW*FLTHQSRDRTL
Trigger: GAGGGTACGGTCCCTACTCTGATGTGTCAGAAATCACCACTGCCGCAGGGCCCCCTGGGCAGTGCAGAGCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp GATAACTCGGTGGGTAGCACTCAGGAGACTGCGGTGTaGCCACCACCCGGCGGACTCCGGTGCTGTCTTCAA +
Preference number: 6 (lower is better)
Translates to: DNSVGSTQETAV*PPPGGLRCCLQ
Trigger: TTGAAGACAGCACCGGAGTCCGCCGGGTGGTGGTCACACCGCAGTCTCCTGAGTGCTACCCACCGAGTTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp CACTGTGGCGCAGCTGTTCTTGTAGATGGTGGAAGGTaGGCTGTTGAGGCGGTTCTGGCGGTCGATCTGGCG +
Preference number: 6 (lower is better)
Translates to: HCGAAVLVDGGR*AVEAVLAVDLA
Trigger: CGCCAGATCGACCGCCAGAACCGCCTCAACAGCCCACCTTCCACCATCTACAAGAACAGCTGCGCCACAGTG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp AGCAGGTTGCCAACCGTGCACTCCAGCTCAGGCCCATaGTACACCTCTGAGGCGACATTCTCGGGTTCCGTC +
Preference number: 6 (lower is better)
Translates to: SRLPTVHSSSGP*YTSEATFSGSV
Trigger: GACGGAACCCGAGAATGTCGCCTCAGAGGTGTACCATGGGCCTGAGCTGGAGTGCACGGTTGGCAACCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp CGCACTCTGAAGCGGTACACAGTTCCAGGCAGCAGGTaGCCAACCGTGCACTCCAGCTCAGGCCCATGGTAC +
Preference number: 6 (lower is better)
Translates to: RTLKRYTVPGSR*PTVHSSSGPWY
Trigger: GTACCATGGGCCTGAGCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAACTGTGTACCGCTTCAGAGTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp CGCAGCTGTTCTTGTAGATGGTGGAAGGTGGGCTGTTaGGGCGGTTCTGGCGGTCGATCTGGCGGTCCTTCA +
Preference number: 6 (lower is better)
Translates to: RSCSCRWWKVGC*GGSGGRSGGPS
Trigger: TGAAGGACCGCCAGATCGACCGCCAGAACCGCCTCAACAGCCCACCTTCCACCATCTACAAGAACAGCTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp GAAGGTGGGCTGTTGAGGCGGTTCTGGCGGTCGATCTaGCGGTCCTTCAGCTTCTTATGTGGAGGCTTGCTG +
Preference number: 6 (lower is better)
Translates to: EGGLLRRFWRSI*RSFSFLCGGLL
Trigger: CAGCAAGCCTCCACATAAGAAGCTGAAGGACCGCCAGATCGACCGCCAGAACCGCCTCAACAGCCCACCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp TTCAGAGCTCGCACTCTGAAGCGGTACACAGTTCCAGGCAGCAGGTaGCCAACCGTGCACTCCAGCTCAGGCCCATGGTACACCTCTGAG +
Preference number: 6 (lower is better)
Translates to: FRARTLKRYTVPGSR*PTVHSSSGPWYTSE
Trigger: CTCAGAGGTGTACCATGGGCCTGAGCTGGAGTGCACGGTTGGCAACCTGCTGCCTGGAACTGTGTACCGCTTCAGAGTGCGAGCTCTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp AACCACTGGTGCCGATGTCGTTCCGAGCAGCGAGCCTaGACGTGTAGCCCATGGCTGGACAGAGCTTTGTCA +
Preference number: 6 (lower is better)
Translates to: NHWCRCRSEQRA*TCSPWLDRALS
Trigger: TGACAAAGCTCTGTCCAGCCATGGGCTACACGTTCAGGCTCGCTGCTCGGAACGACATCGGCACCAGTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp TGCTTTGGTCTACCCAAAACCCTCGGTGGTCGGCACTaGCCTGGTGCAAGGCTTAGTGTGCGGACAGGGAGA +
Preference number: 6 (lower is better)
Translates to: CFGLPKTLGGRH*PGARLSVRTGR
Trigger: TCTCCCTGTCCGCACACTAAGCCTTGCACCAGGTCAGTGCCGACCACCGAGGGTTTTGGGTAGACCAAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp AGGGACCGTACCCTCCGTCATTCAGAGCTCGCACTCTaGAGCGGTACACAGTTCCAGGCAGCAGGTTGCCAA +
Preference number: 6 (lower is better)
Translates to: RDRTLRHSELAL*SGTQFQAAGCQ
Trigger: TTGGCAACCTGCTGCCTGGAACTGTGTACCGCTTCAGAGTGCGAGCTCTGAATGACGGAGGGTACGGTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 72 bp ACCACCATGGGGTCCACAGGACAGTCCGACAGGGGGTaGCCAAGACAGCACAACTGCTCTTGCCTGGATATT +
Preference number: 6 (lower is better)
Translates to: TTMGSTGQSDRG*PRQHNCSCLDI
Trigger: AATATCCAGGCAAGAGCAGTTGTGCTGTCTTGGGCACCCCCTGTCGGACTGTCCTGTGGACCCCATGGTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS CAA 72 bp GCAAACTGTTCGTCGGTGGGCATCATGCCCTTCATCTaGGCCTCTTCCATGCCTCCCAGGTCCCCTGTAAGC +
Preference number: 6 (lower is better)
Translates to: ANCSSVGIMPFI*ASSMPPRSPVS
Trigger: GCTTACAGGGGACCTGGGAGGCATGGAAGAGGCCAAGATGAAGGGCATGATGCCCACCGACGAACAGTTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp GCCTTCCACTGCAGGGTAAGTGAACTTTTGCTCCTGTGTGCCAGCTaGGGAGGGAAGGGACATTCTGGTGCGCAGCTATGGGTGGTGAAG +
Preference number: 6 (lower is better)
Translates to: AFHCRVSELLLLCAS*GGKGHSGAQLWVVK
Trigger: CTTCACCACCCATAGCTGCGCACCAGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGAGCAAAAGTTCACTTACCCTGCAGTGGAAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp CAGATAAGGGGGCAGGTGATGGGTTGGAGACATGGCTaGGGGATAACTCGGTGGGTAGCACTCAGGAGACTG +
Preference number: 6 (lower is better)
Translates to: QIRGQVMGWRHG*GITRWVALRRL
Trigger: CAGTCTCCTGAGTGCTACCCACCGAGTTATCCCTCAGCCATGTCTCCAACCCATCACCTGCCCCCTTATCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp AACCGTGCACTCCAGCTCAGGCCCATGGTACACCTCTaGGGCGACATTCTCGGGTTCCGTCATTTCCACACT +
Preference number: 6 (lower is better)
Translates to: NRALQLRPMVHL*GDILGFRHFHT
Trigger: AGTGTGGAAATGACGGAACCCGAGAATGTCGCCTCAGAGGTGTACCATGGGCCTGAGCTGGAGTGCACGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp CTGGCGGTCGATCTGGCGGTCCTTCAGCTTCTTATGTaGAGGCTTGCTGTACTGGTCTTCTCGGGTGACGTA +
Preference number: 6 (lower is better)
Translates to: LAVDLAVLQLLM*RLAVLVFSGDV
Trigger: TACGTCACCCGAGAAGACCAGTACAGCAAGCCTCCACATAAGAAGCTGAAGGACCGCCAGATCGACCGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp CTCCACTGTGGCCTTTCCCGTAGCCATTGTACACTGTaGCGCAGCTGTTCTTGTAGATGGTGGAAGGTGGGC +
Preference number: 6 (lower is better)
Translates to: LHCGLSRSHCTL*RSCSCRWWKVG
Trigger: GCCCACCTTCCACCATCTACAAGAACAGCTGCGCCACAGTGTACAATGGCTACGGGAAAGGCCACAGTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp GTCTGGCAGTGGACAAGCTCACTATATGGCCCTGCGCCTGCTGGATaGAAGGCCTGTAGTCTGCAGCAATACTGTGCAGCAGGCAACAGA +
Preference number: 6 (lower is better)
Translates to: VWQWTSSLYGPAPAG*KACSLQQYCAAGNR
Trigger: TCTGTTGCCTGCTGCACAGTATTGCTGCAGACTACAGGCCTTCAATCCAGCAGGCGCAGGGCCATATAGTGAGCTTGTCCACTGCCAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp GGACAAGCTCACTATATGGCCCTGCGCCTGCTGGATTaGAGGCCTGTAGTCTGCAGCAATACTGTGCAGCAG +
Preference number: 6 (lower is better)
Translates to: GQAHYMALRLLD*RPVVCSNTVQQ
Trigger: CTGCTGCACAGTATTGCTGCAGACTACAGGCCTTCAATCCAGCAGGCGCAGGGCCATATAGTGAGCTTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 72 bp ACCTGGGTTCACTTGGACAAGAATGACCTGCTGAGCTaGTTCTCCGTTCACCAAGTGGGGCATCATGGCCAC +
Preference number: 6 (lower is better)
Translates to: TWVHLDKNDLLS*FSVHQVGHHGH
Trigger: GTGGCCATGATGCCCCACTTGGTGAACGGAGAAGCAGCTCAGCAGGTCATTCTTGTCCAAGTGAACCCAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS GCA 72 bp GGACAGTCCGACAGGGGGTGCCCAAGACAGCACAACTaGTCTTGCCTGGATATTAGACACCTGTGGTTTCTC +
Preference number: 6 (lower is better)
Translates to: GQSDRGCPRQHN*SCLDIRHLWFL
Trigger: GAGAAACCACAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTGTCTTGGGCACCCCCTGTCGGACTGTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS GCA 72 bp CAAAATGGACAGGGTCGCGAAGCCAAGCACGATGAGTaGAGCAAACTGTTCGTCGGTGGGCATCATGCCCTT +
Preference number: 6 (lower is better)
Translates to: QNGQGREAKHDE*SKLFVGGHHAL
Trigger: AAGGGCATGATGCCCACCGACGAACAGTTTGCTGCACTCATCGTGCTTGGCTTCGCGACCCTGTCCATTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp TCTGTCGGGGCTGGTTGTACAAACCAGGACTTCACTTaGGCAGCTCTTCCCCTCCATGTTGGAAGCAGTCAG +
Preference number: 6 (lower is better)
Translates to: SVGAGCTNQDFT*AALPLHVGSSQ
Trigger: CTGACTGCTTCCAACATGGAGGGGAAGAGCTGCCCAAGTGAAGTCCTGGTTTGTACAACCAGCCCCGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp TGCAGGGTAAGTGAACTTTTGCTCCTGTGTGCCAGCTaGGGAGGGAAGGGACATTCTGGTGCGCAGCTATGG +
Preference number: 6 (lower is better)
Translates to: CRVSELLLLCAS*GGKGHSGAQLW
Trigger: CCATAGCTGCGCACCAGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGAGCAAAAGTTCACTTACCCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp GTCTGTCGGGGCTGGTTGTACAAACCAGGACTTCACTaGGGCAGCTCTTCCCCTCCATGTTGGAAGCAGTCA +
Preference number: 6 (lower is better)
Translates to: VCRGWLYKPGLH*GSSSPPCWKQS
Trigger: TGACTGCTTCCAACATGGAGGGGAAGAGCTGCCCAAGTGAAGTCCTGGTTTGTACAACCAGCCCCGACAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp CAGGCACATCCCACTCTAAGTGGACTCCTTTGTGCTTaGGTCTACCCAAAACCCTCGGTGGTCGGCACTGAC +
Preference number: 6 (lower is better)
Translates to: QAHPTLSGLLCA*VYPKPSVVGTD
Trigger: GTCAGTGCCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGGAGTCCACTTAGAGTGGGATGTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp TTTCAGACGCAGGCACATCCCACTCTAAGTGGACTCCTTTGTGCTTaGGTCTACCCAAAACCCTCGGTGGTCGGCACTGACCTGGTGCAA +
Preference number: 6 (lower is better)
Translates to: FQTQAHPTLSGLLCA*VYPKPSVVGTDLVQ
Trigger: TTGCACCAGGTCAGTGCCGACCACCGAGGGTTTTGGGTAGACCAAAGCACAAAGGAGTCCACTTAGAGTGGGATGTGCCTGCGTCTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp ATGAGTGCAGCAAACTGTTCGTCGGTGGGCATCATGCCCTTCATCTaGGCCTCTTCCATGCCTCCCAGGTCCCCTGTAAGCATAACCTCA +
Preference number: 6 (lower is better)
Translates to: MSAANCSSVGIMPFI*ASSMPPRSPVSITS
Trigger: TGAGGTTATGCTTACAGGGGACCTGGGAGGCATGGAAGAGGCCAAGATGAAGGGCATGATGCCCACCGACGAACAGTTTGCTGCACTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp GGAGACTTTCAGAACACTGACTGTGCCCACCGGTACTaGTGCAGCACGCTCGCAGTTTGTACAAAGTGCCTG +
Preference number: 6 (lower is better)
Translates to: GDFQNTDCAHRY*CSTLAVCTKCL
Trigger: CAGGCACTTTGTACAAACTGCGAGCGTGCTGCATCAGTACCGGTGGGCACAGTCAGTGTTCTGAAAGTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp CAAACAAAATGGACAGGGTCGCGAAGCCAAGCACGATaGGTGCAGCAAACTGTTCGTCGGTGGGCATCATGC +
Preference number: 6 (lower is better)
Translates to: QTKWTGSRSQAR*VQQTVRRWASC
Trigger: GCATGATGCCCACCGACGAACAGTTTGCTGCACTCATCGTGCTTGGCTTCGCGACCCTGTCCATTTTGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS GCA 72 bp GTCTCCCAGAAGATTTCACAGGAATTCCCTTCTAACTaGGTCACTCGAGGTGCTTTGAGGGTGGGAGGCACG +
Preference number: 6 (lower is better)
Translates to: VSQKISQEFPSN*VTRGALRVGGT
Trigger: CGTGCCTCCCACCCTCAAAGCACCTCGAGTGACGCAGTTAGAAGGGAATTCCTGTGAAATCTTCTGGGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp ACATTCTGGTGCGCAGCTATGGGTGGTGAAGCTGACTaGCTCGGAGCAGGATCCCTTGACAGAATTGTACAC +
Preference number: 6 (lower is better)
Translates to: TFWCAAMGGEAD*LGAGSLDRIVH
Trigger: GTGTACAATTCTGTCAAGGGATCCTGCTCCGAGCCAGTCAGCTTCACCACCCATAGCTGCGCACCAGAATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp TGGGTGGTGAAGCTGACTGGCTCGGAGCAGGATCCCTaGACAGAATTGTACACGGCATATACCCTCACATGG +
Preference number: 6 (lower is better)
Translates to: WVVKLTGSEQDP*TELYTAYTLTW
Trigger: CCATGTGAGGGTATATGCCGTGTACAATTCTGTCAAGGGATCCTGCTCCGAGCCAGTCAGCTTCACCACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp TGGACAAGCTCACTATATGGCCCTGCGCCTGCTGGATaGAAGGCCTGTAGTCTGCAGCAATACTGTGCAGCA +
Preference number: 6 (lower is better)
Translates to: WTSSLYGPAPAG*KACSLQQYCAA
Trigger: TGCTGCACAGTATTGCTGCAGACTACAGGCCTTCAATCCAGCAGGCGCAGGGCCATATAGTGAGCTTGTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp GAACCATTGTCAATTGGAGCCTTCCACTGCAGGGTAAGTGAACTTTaGCTCCTGTGTGCCAGCTTGGGAGGGAAGGGACATTCTGGTGCG +
Preference number: 6 (lower is better)
Translates to: EPLSIGAFHCRVSEL*LLCASLGGKGHSGA
Trigger: CGCACCAGAATGTCCCTTCCCTCCCAAGCTGGCACACAGGAGCAAAAGTTCACTTACCCTGCAGTGGAAGGCTCCAATTGACAATGGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp TGGAGGCACATGGATAGGAGGAATGGACCCATTGGGTaGCATCATGGGAACTTCAGCAGGTCCTTGGATGCA +
Preference number: 6 (lower is better)
Translates to: WRHMDRRNGPIG*HHGNFSRSLDA
Trigger: TGCATCCAAGGACCTGCTGAAGTTCCCATGATGTCACCCAATGGGTCCATTCCTCCTATCCATGTGCCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp CCACTTCCCACTGCCCAGCTTCAGAAGTTCCATCCGTaGTCTCCAGCAGATACTTCAGGATTTCTGAGCCAC +
Preference number: 6 (lower is better)
Translates to: PLPTAQLQKFHP*SPADTSGFLSH
Trigger: GTGGCTCAGAAATCCTGAAGTATCTGCTGGAGATCACGGATGGAACTTCTGAAGCTGGGCAGTGGGAAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp CTCGGCTCTGATGGTAAAGGTCTCACCTGGGTTCACTaGGACAAGAATGACCTGCTGAGCTGCTTCTCCGTT +
Preference number: 6 (lower is better)
Translates to: LGSDGKGLTWVH*DKNDLLSCFSV
Trigger: AACGGAGAAGCAGCTCAGCAGGTCATTCTTGTCCAAGTGAACCCAGGTGAGACCTTTACCATCAGAGCCGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS CAA 90 bp CCATCCGTGATCTCCAGCAGATACTTCAGGATTTCTGAGCCACCGTaGTCCTTTGGAGCATCCCACTTGACACTGAAGCCATGTGATGTG +
Preference number: 6 (lower is better)
Translates to: PSVISSRYFRISEPP*SFGASHLTLKPCDV
Trigger: CACATCACATGGCTTCAGTGTCAAGTGGGATGCTCCAAAGGACAACGGTGGCTCAGAAATCCTGAAGTATCTGCTGGAGATCACGGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp CGGCATATACCCTCACATGGTAATCCGTGGCAGGCCTaGGATCTTTCAGGTTACACTCCAACTCTTCTCCAC +
Preference number: 6 (lower is better)
Translates to: RHIPSHGNPWQA*DLSGYTPTLLH
Trigger: GTGGAGAAGAGTTGGAGTGTAACCTGAAAGATCTCAGGCCTGCCACGGATTACCATGTGAGGGTATATGCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp GACATTCTCGGGTTCCGTCATTTCCACACTGTATTCTaGGACCTCACAGCCACTTTCAGACGCAGGCACATC +
Preference number: 6 (lower is better)
Translates to: DILGFRHFHTVF*DLTATFRRRHI
Trigger: GATGTGCCTGCGTCTGAAAGTGGCTGTGAGGTCTCAGAATACAGTGTGGAAATGACGGAACCCGAGAATGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp ACAGGGGGTGCCCAAGACAGCACAACTGCTCTTGCCTaGATATTAGACACCTGTGGTTTCTCTATTCCCGAA +
Preference number: 6 (lower is better)
Translates to: TGGAQDSTTALA*ILDTCGFSIPE
Trigger: TTCGGGAATAGAGAAACCACAGGTGTCTAATATCCAGGCAAGAGCAGTTGTGCTGTCTTGGGCACCCCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000046157.10
ENSMUST00000193779.2
ENSMUST00000195008.6
CDS CAA 72 bp TCTGGAAGGAGGTTCTTCATCACGTGTGTGGTAGTGTaGCCCACAGTAATGCAGCTGTCTCCCAGATCGATG +
Preference number: 6 (lower is better)
Translates to: SGRRFFITCVVV*PTVMQLSPRSM
Trigger: CATCGATCTGGGAGACAGCTGCATTACTGTGGGCAACACTACCACACACGTGATGAAGAACCTCCTTCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp TGTAGTGTGTACACCATGTCACCAGCAGCATGTGTCTaGGAGTTACTGTCTCCCCACTTGAGCTTCAGGCTC +
Preference number: 6 (lower is better)
Translates to: CSVYTMSPAACV*ELLSPHLSFRL
Trigger: GAGCCTGAAGCTCAAGTGGGGAGACAGTAACTCCAAGACACATGCTGCTGGTGACATGGTGTACACACTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp GACGTAGCTCGACATTCCATACAGGGGGATAATTTCTaGCTCGCTATATATTGTGGGAGGAAGGTGAGGCTG +
Preference number: 6 (lower is better)
Translates to: DVARHSIQGDNF*LAIYCGRKVRL
Trigger: CAGCCTCACCTTCCTCCCACAATATATAGCGAGCCAGAAATTATCCCCCTGTATGGAATGTCGAGCTACGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp ATCTCCAGCAGATACTTCAGGATTTCTGAGCCACCGTaGTCCTTTGGAGCATCCCACTTGACACTGAAGCCA +
Preference number: 6 (lower is better)
Translates to: ISSRYFRISEPP*SFGASHLTLKP
Trigger: TGGCTTCAGTGTCAAGTGGGATGCTCCAAAGGACAACGGTGGCTCAGAAATCCTGAAGTATCTGCTGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp TACTTCAGGATTTCTGAGCCACCGTTGTCCTTTGGAGCATCCCACTaGACACTGAAGCCATGTGATGTGACAGGTCCTTTAATGAGGGGT +
Preference number: 6 (lower is better)
Translates to: YFRISEPPLSFGASH*TLKPCDVTGPLMRG
Trigger: ACCCCTCATTAAAGGACCTGTCACATCACATGGCTTCAGTGTCAAGTGGGATGCTCCAAAGGACAACGGTGGCTCAGAAATCCTGAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp CAACTCATACTCTTGCAGGTCAGAATCACTGGATTTTaGGCTGCTCCTCGCTCTTCGCTCTGTCTTCTTGAT +
Preference number: 6 (lower is better)
Translates to: QLILLQVRITGF*AAPRSSLCLLD
Trigger: ATCAAGAAGACAGAGCGAAGAGCGAGGAGCAGCCCAAAATCCAGTGATTCTGACCTGCAAGAGTATGAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp ACTGATGCAGCACGCTCGCAGTTTGTACAAAGTGCCTaGTTTCAAATGGGTAAAGACATACTCTGTAGCCGA +
Preference number: 6 (lower is better)
Translates to: TDAARSQFVQSA*FQMGKDILCSR
Trigger: TCGGCTACAGAGTATGTCTTTACCCATTTGAAACCAGGCACTTTGTACAAACTGCGAGCGTGCTGCATCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp ATGGCTGGACAGAGCTTTGTCAGTTTGCAGTGCTTCTaGCTTCCAAAGAAACACTGTCTGAAACCACTGTTT +
Preference number: 6 (lower is better)
Translates to: MAGQSFVSLQCF*LPKKHCLKPLF
Trigger: AAACAGTGGTTTCAGACAGTGTTTCTTTGGAAGCCAGAAGCACTGCAAACTGACAAAGCTCTGTCCAGCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp AATGTCTTGCACCCTCTTTACTTCCAACTCATACTCTaGCAGGTCAGAATCACTGGATTTTGGGCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: NVLHPLYFQLIL*QVRITGFWAAP
Trigger: AGGAGCAGCCCAAAATCCAGTGATTCTGACCTGCAAGAGTATGAGTTGGAAGTAAAGAGGGTGCAAGACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CCA 72 bp ATTGATAGCCTGAATTCTGATCCGGTATGTCGTTTCTaGAAGGAGGTTCTTCATCACGTGTGTGGTAGTGTT +
Preference number: 6 (lower is better)
Translates to: IDSLNSDPVCRF*KEVLHHVCGSV
Trigger: AACACTACCACACACGTGATGAAGAACCTCCTTCCAGAAACGACATACCGGATCAGAATTCAGGCTATCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp AGACACCTGTGGTTTCTCTATTCCCGAAAGAATGTCTaGCACCCTCTTTACTTCCAACTCATACTCTTGCAG +
Preference number: 6 (lower is better)
Translates to: RHLWFLYSRKNV*HPLYFQLILLQ
Trigger: CTGCAAGAGTATGAGTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCGGGAATAGAGAAACCACAGGTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp TTTTCACAGTACAGGTTAGGTCCTCTCCAGTGTATTTaGGGTGGAAATGGCTATCGTTCTCATCCTCCTGAA +
Preference number: 6 (lower is better)
Translates to: FSQYRLGPLQCI*GGNGYRSHPPE
Trigger: TTCAGGAGGATGAGAACGATAGCCATTTCCACCCAAAATACACTGGAGAGGACCTAACCTGTACTGTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 72 bp GAAGCAGTCAGCCTGAATTTATACTGTGTGCTTCGCTaGAGATTTTTCACAGTACAGGTTAGGTCCTCTCCA +
Preference number: 6 (lower is better)
Translates to: EAVSLNLYCVLR*RFFTVQVRSSP
Trigger: TGGAGAGGACCTAACCTGTACTGTGAAAAATCTCAAGCGAAGCACACAGTATAAATTCAGGCTGACTGCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp CTGGATATTAGACACCTGTGGTTTCTCTATTCCCGAAAGAATGTCTaGCACCCTCTTTACTTCCAACTCATACTCTTGCAGGTCAGAATC +
Preference number: 6 (lower is better)
Translates to: LDIRHLWFLYSRKNV*HPLYFQLILLQVRI
Trigger: GATTCTGACCTGCAAGAGTATGAGTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCGGGAATAGAGAAACCACAGGTGTCTAATATCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS CAA 90 bp CTGGATATTAGACACCTGTGGTTTCTCTATTCCCGAAAGAATGTCTaGCACCCTCTTTACTTCCAACTCATACTCTTGGATGCACTGAAG +
Preference number: 6 (lower is better)
Translates to: LDIRHLWFLYSRKNV*HPLYFQLILLDALK
Trigger: CTTCAGTGCATCCAAGAGTATGAGTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCGGGAATAGAGAAACCACAGGTGTCTAATATCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193779.2
CDS CAA 72 bp AGACACCTGTGGTTTCTCTATTCCCGAAAGAATGTCTaGCACCCTCTTTACTTCCAACTCATACTCTTGGAT +
Preference number: 6 (lower is better)
Translates to: RHLWFLYSRKNV*HPLYFQLILLD
Trigger: ATCCAAGAGTATGAGTTGGAAGTAAAGAGGGTGCAAGACATTCTTTCGGGAATAGAGAAACCACAGGTGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193779.2
CDS CAA 90 bp TCCATGTTGGAAGCAGTCAGCCTGAATTTATACTGTGTGCTTCGCTaGAGATTTTTCACAGTACAGGTTAGGTCCTCTCCAGTGTATTTT +
Preference number: 6 (lower is better)
Translates to: SMLEAVSLNLYCVLR*RFFTVQVRSSPVYF
Trigger: AAAATACACTGGAGAGGACCTAACCTGTACTGTGAAAAATCTCAAGCGAAGCACACAGTATAAATTCAGGCTGACTGCTTCCAACATGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6
CDS TCA 72 bp GAAGGCGGTAATGGCCGAGTTTTTGCTTTAATGAACTaGCTAAATGGTCCAACTCCAATTTCATTGATAGCC +
Preference number: 6 (lower is better)
Translates to: EGGNGRVFALMN*LNGPTPISLIA
Trigger: GGCTATCAATGAAATTGGAGTTGGACCATTTAGTCAGTTCATTAAAGCAAAAACTCGGCCATTACCGCCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000046157.10
ENSMUST00000195008.6