Pregenerated sensors for FMR1NB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062170Ensembl transcript IDs: ENSMUST00000069731.12, ENSMUST00000071848.7, ENSMUST00000114647.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AGAAGCAGGCCCAAGTGCCTCCTGGCCCACAAGTATTGCAGACACTaGCTTACTGAAGTCCAGAAGCCAAACCGAGGGGCATCCGCCATG | + |
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Preference number: 5 (lower is better) Translates to: RSRPKCLLAHKYCRH*LTEVQKPNRGASAM Trigger: CATGGCGGATGCCCCTCGGTTTGGCTTCTGGACTTCAGTAAGCCAGTGTCTGCAATACTTGTGGGCCAGGAGGCACTTGGGCCTGCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069731.12 ENSMUST00000071848.7 ENSMUST00000114647.8 |
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| CDS GCA 90 bp | AATAAAAGTAGAAGCAGGCCCAAGTGCCTCCTGGCCCACAAGTATTaGAGACACTGGCTTACTGAAGTCCAGAAGCCAAACCGAGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: NKSRSRPKCLLAHKY*RHWLTEVQKPNRGA Trigger: TGCCCCTCGGTTTGGCTTCTGGACTTCAGTAAGCCAGTGTCTGCAATACTTGTGGGCCAGGAGGCACTTGGGCCTGCTTCTACTTTTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069731.12 ENSMUST00000071848.7 ENSMUST00000114647.8 |
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| CDS CCA 90 bp | TCACCAGCGTCCAGAATAAAAGTAGAAGCAGGCCCAAGTGCCTCCTaGCCCACAAGTATTGCAGACACTGGCTTACTGAAGTCCAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: SPASRIKVEAGPSAS*PTSIADTGLLKSRS Trigger: GCTTCTGGACTTCAGTAAGCCAGTGTCTGCAATACTTGTGGGCCAGGAGGCACTTGGGCCTGCTTCTACTTTTATTCTGGACGCTGGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069731.12 ENSMUST00000071848.7 ENSMUST00000114647.8 |
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| CDS CCA 90 bp | ACATATTTCCCAAAGGGGGTTCAAGTTCTGCAGCTTCAGCAAGAATaGGCAATTTCGCAGTGTTCACAGGACGGAACAGGATCACCAGCG | + |
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Preference number: 5 (lower is better) Translates to: TYFPKGVQVLQLQQE*AISQCSQDGTGSPA Trigger: CGCTGGTGATCCTGTTCCGTCCTGTGAACACTGCGAAATTGCCCATTCTTGCTGAAGCTGCAGAACTTGAACCCCCTTTGGGAAATATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069731.12 ENSMUST00000071848.7 |
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| CDS CCA 90 bp | TCACTCTCGCTAAGATACGGCTGGTTATTACATGCCACCACCACCTaGTTGTCCCTTATGATGCAGGTTGTTGGAAAGAAAAAGTCCAAC | + |
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Preference number: 5 (lower is better) Translates to: SLSLRYGWLLHATTT*LSLMMQVVGKKKSN Trigger: GTTGGACTTTTTCTTTCCAACAACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATCTTAGCGAGAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS CCA 90 bp | GAACAGCACTTGGATTTTAAACATTCACTCTCGCTAAGATACGGCTaGTTATTACATGCCACCACCACCTGGTTGTCCCTTATGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: EQHLDFKHSLSLRYG*LLHATTTWLSLMMQ Trigger: CTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATCTTAGCGAGAGTGAATGTTTAAAATCCAAGTGCTGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS TCA 90 bp | GATACGGCTGGTTATTACATGCCACCACCACCTGGTTGTCCCTTATaGTGCAGGTTGTTGGAAAGAAAAAGTCCAACATATTTCCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: DTAGYYMPPPPGCPL*CRLLERKSPTYFPK Trigger: CTTTGGGAAATATGTTGGACTTTTTCTTTCCAACAACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS GCA 72 bp | AGAAGCAGGCCCAAGTGCCTCCTGGCCCACAAGTATTaGAGACACTGGCTTACTGAAGTCCAGAAGCCAAAC | + |
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Preference number: 6 (lower is better) Translates to: RSRPKCLLAHKY*RHWLTEVQKPN Trigger: GTTTGGCTTCTGGACTTCAGTAAGCCAGTGTCTGCAATACTTGTGGGCCAGGAGGCACTTGGGCCTGCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069731.12 ENSMUST00000071848.7 ENSMUST00000114647.8 |
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| CDS CCA 72 bp | CCAAAGGGGGTTCAAGTTCTGCAGCTTCAGCAAGAATaGGCAATTTCGCAGTGTTCACAGGACGGAACAGGA | + |
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Preference number: 6 (lower is better) Translates to: PKGVQVLQLQQE*AISQCSQDGTG Trigger: TCCTGTTCCGTCCTGTGAACACTGCGAAATTGCCCATTCTTGCTGAAGCTGCAGAACTTGAACCCCCTTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000069731.12 ENSMUST00000071848.7 |
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| CDS CCA 72 bp | TCCAGAATAAAAGTAGAAGCAGGCCCAAGTGCCTCCTaGCCCACAAGTATTGCAGACACTGGCTTACTGAAG | + |
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Preference number: 6 (lower is better) Translates to: SRIKVEAGPSAS*PTSIADTGLLK Trigger: CTTCAGTAAGCCAGTGTCTGCAATACTTGTGGGCCAGGAGGCACTTGGGCCTGCTTCTACTTTTATTCTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069731.12 ENSMUST00000071848.7 ENSMUST00000114647.8 |
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| CDS GCA 72 bp | ACATTCACTCTCGCTAAGATACGGCTGGTTATTACATaGCACCACCACCTGGTTGTCCCTTATGATGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: TFTLAKIRLVIT*HHHLVVPYDAG Trigger: ACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATCTTAGCGAGAGTGAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS CAA 90 bp | CTCTCGCTAAGATACGGCTGGTTATTACATGCCACCACCACCTGGTaGTCCCTTATGATGCAGGTTGTTGGAAAGAAAAAGTCCAACATA | + |
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Preference number: 6 (lower is better) Translates to: LSLRYGWLLHATTTW*SLMMQVVGKKKSNI Trigger: TATGTTGGACTTTTTCTTTCCAACAACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATCTTAGCGAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS CCA 72 bp | CTAAGATACGGCTGGTTATTACATGCCACCACCACCTaGTTGTCCCTTATGATGCAGGTTGTTGGAAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: LRYGWLLHATTT*LSLMMQVVGKK Trigger: TTTCTTTCCAACAACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATCTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS CAA 72 bp | AGATACGGCTGGTTATTACATGCCACCACCACCTGGTaGTCCCTTATGATGCAGGTTGTTGGAAAGAAAAAG | + |
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Preference number: 6 (lower is better) Translates to: RYGWLLHATTTW*SLMMQVVGKKK Trigger: CTTTTTCTTTCCAACAACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS CCA 72 bp | TTGGATTTTAAACATTCACTCTCGCTAAGATACGGCTaGTTATTACATGCCACCACCACCTGGTTGTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: LDFKHSLSLRYG*LLHATTTWLSL Trigger: AAGGGACAACCAGGTGGTGGTGGCATGTAATAACCAGCCGTATCTTAGCGAGAGTGAATGTTTAAAATCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS TCA 72 bp | GGTTATTACATGCCACCACCACCTGGTTGTCCCTTATaGTGCAGGTTGTTGGAAAGAAAAAGTCCAACATAT | + |
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Preference number: 6 (lower is better) Translates to: GYYMPPPPGCPL*CRLLERKSPTY Trigger: ATATGTTGGACTTTTTCTTTCCAACAACCTGCATCATAAGGGACAACCAGGTGGTGGTGGCATGTAATAACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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| CDS CAA 72 bp | CATTTGATTATAGTCCCAGATGTTGAAGAACAGCACTaGGATTTTAAACATTCACTCTCGCTAAGATACGGC | + |
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Preference number: 6 (lower is better) Translates to: HLIIVPDVEEQH*DFKHSLSLRYG Trigger: GCCGTATCTTAGCGAGAGTGAATGTTTAAAATCCAAGTGCTGTTCTTCAACATCTGGGACTATAATCAAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000071848.7 |
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