RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FMOD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041559

Ensembl transcript IDs: ENSMUST00000048183.8, ENSMUST00000162779.2

Found 149 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGAATGCAGAGGAAGCCAGGTCTAGTGTCGGCAGGACTTGGGCCTaGCAGGGCTTCTTGCACCCCAGTGAGCATCTCCACAGGGCTGGT +
Preference number: 1 (lower is better)
Translates to: VNAEEARSSVGRTWA*QGFLHPSEHLHRAG
Trigger: ACCAGCCCTGTGGAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCCGACACTAGACCTGGCTTCCTCTGCATTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 90 bp TTCATGCTGAGGGCTCTTCAGAGGCAGGATGGTGATACATGCAGGTaGTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTCCGCAGGTGG +
Preference number: 1 (lower is better)
Translates to: FMLRALQRQDGDTCR*FPRTLARAALLRRW
Trigger: CCACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTATCACCATCCTGCCTCTGAAGAGCCCTCAGCATGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 90 bp GCTTGCTTCATGCTGAGGGCTCTTCAGAGGCAGGATGGTGATACATaGAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTCCGC +
Preference number: 1 (lower is better)
Translates to: ACFMLRALQRQDGDT*RCFPRTLARAALLR
Trigger: GCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTATCACCATCCTGCCTCTGAAGAGCCCTCAGCATGAAGCAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 90 bp CATAGTGTGAATGCAGAGGAAGCCAGGTCTAGTGTCGGCAGGACTTaGGCCTGGCAGGGCTTCTTGCACCCCAGTGAGCATCTCCACAGG +
Preference number: 1 (lower is better)
Translates to: HSVNAEEARSSVGRT*AWQGFLHPSEHLHR
Trigger: CCTGTGGAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCCGACACTAGACCTGGCTTCCTCTGCATTCACACTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR TCA 90 bp CTACAAATCACAGGCACCACTGGGCATAAGGCGGACTGCATAGTGTaGATGCAGAGGAAGCCAGGTCTAGTGTCGGCAGGACTTGGGCCT +
Preference number: 1 (lower is better)
Translates to: LQITGTTGHKADCIV*MQRKPGLVSAGLGP
Trigger: AGGCCCAAGTCCTGCCGACACTAGACCTGGCTTCCTCTGCATTCACACTATGCAGTCCGCCTTATGCCCAGTGGTGCCTGTGATTTGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR TCA 90 bp CATTCATGCTTGCTTCATGCTGAGGGCTCTTCAGAGGCAGGATGGTaGTACATGCAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTT +
Preference number: 1 (lower is better)
Translates to: HSCLLHAEGSSEAGW*YMQVLPKNPGQGSL
Trigger: AAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTATCACCATCCTGCCTCTGAAGAGCCCTCAGCATGAAGCAAGCATGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 90 bp GTACCCCGAGGCGATGCCGAGGGCTGCCACCAACCATTCCATCCTTaGAGATGCACTTATAAAATAACTTTATTGGTTAGGTTGGCCGCC +
Preference number: 1 (lower is better)
Translates to: VPRGDAEGCHQPFHP*RCTYKITLLVRLAA
Trigger: GGCGGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGCATCGCCTCGGGGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 90 bp CCTGTTGGAAGGAGATTGAATAAGATCCTGTGGACTTCTGTCACATaGGTGTCCCAGACCATCCAGCAAAAGCCAAACATGCAGCGGGGT +
Preference number: 1 (lower is better)
Translates to: PVGRRLNKILWTSVT*VSQTIQQKPNMQRG
Trigger: ACCCCGCTGCATGTTTGGCTTTTGCTGGATGGTCTGGGACACGCATGTGACAGAAGTCCACAGGATCTTATTCAATCTCCTTCCAACAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 90 bp TCCCACCTAACTCTGCCTGTTGGAAGGAGATTGAATAAGATCCTGTaGACTTCTGTCACATGCGTGTCCCAGACCATCCAGCAAAAGCCA +
Preference number: 1 (lower is better)
Translates to: SHLTLPVGRRLNKIL*TSVTCVSQTIQQKP
Trigger: TGGCTTTTGCTGGATGGTCTGGGACACGCATGTGACAGAAGTCCACAGGATCTTATTCAATCTCCTTCCAACAGGCAGAGTTAGGTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 90 bp CGAGGCGATGCCGAGGGCTGCCACCAACCATTCCATCCTTGCAGATaGACTTATAAAATAACTTTATTGGTTAGGTTGGCCGCCATTCAT +
Preference number: 1 (lower is better)
Translates to: RGDAEGCHQPFHPCR*TYKITLLVRLAAIH
Trigger: ATGAATGGCGGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGCATCGCCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 90 bp CTTCAGTTCTGCTATCCTGAGGTGTGTCTCTTCCCCATCTTACTATaGATACTGATAATGACCACTGGACACTTCCCTCCTCTGATAGAT +
Preference number: 1 (lower is better)
Translates to: LQFCYPEVCLFPILL*ILIMTTGHFPPLID
Trigger: ATCTATCAGAGGAGGGAAGTGTCCAGTGGTCATTATCAGTATCCATAGTAAGATGGGGAAGAGACACACCTCAGGATAGCAGAACTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 90 bp ACTTATAAAATAACTTTATTGGTTAGGTTGGCCGCCATTCATGCTTaGTTCATGCTGAGGGCTCTTCAGAGGCAGGATGGTGATACATGC +
Preference number: 1 (lower is better)
Translates to: TYKITLLVRLAAIHA*FMLRALQRQDGDTC
Trigger: GCATGTATCACCATCCTGCCTCTGAAGAGCCCTCAGCATGAAGCAAGCATGAATGGCGGCCAACCTAACCAATAAAGTTATTTTATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CAA 90 bp GGTGATACATGCAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTaGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTTGGC +
Preference number: 2 (lower is better)
Translates to: GDTCRCFPRTLARAA*LRRWHSPVETSWFG
Trigger: GCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTATCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR GCA 90 bp ATACATGCAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTCCGCAGGTTCGGCGGGTGGAGTCTaGCTCTGCCATTTGCGTAAC +
Preference number: 2 (lower is better)
Translates to: IHAGASQEPWPGQPCSAGSAGGV*LCHLRN
Trigger: GTTACGCAAATGGCAGAGGCAGACTCCACCCGCCGA...ACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR CCA 90 bp ATACATGCAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTCCGCAGGTCTGCAGAAACTGGCCTaGCCCCTGATCCCACCTAAC +
Preference number: 2 (lower is better)
Translates to: IHAGASQEPWPGQPCSAGLQKLA*PLIPPN
Trigger: GTTAGGTGGGATCAGGGGCCAGGCCAGTTTCTGCAG...ACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR TCA 90 bp CCCGAGGCGATGCCGAGGGCTGCCACCAACCATTCCATCCTTGCAGATGCACTTCACAGGGCTGGTTCCTaGTGCTCTAGCATTATGGAC +
Preference number: 2 (lower is better)
Translates to: PEAMPRAATNHSILADALHRAGS*CSSIMD
Trigger: GTCCATAATGCTAGAGCATCAGGAACCAGCCCTGTG...AAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGCATCGCCTCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR TCA 90 bp AAAGCCCAAGAAGGGGTGCAGATCATGTTGTGTCAGATGAAACTGGAAAGGGGGAACTGGCCTGGCCCCTaGTCCCACCTAACTCTGCCT +
Preference number: 2 (lower is better)
Translates to: KAQEGVQIMLCQMKLERGNWPGP*SHLTLP
Trigger: AGGCAGAGTTAGGTGGGATCAGGGGCCAGGCCAGTT...CCCCCTTTCCAGTTTCATCTGACACAACATGATCTGCACCCCTTCTTGGGCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR CCA 90 bp GGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTTGGCTTTGAATAAGATCCTGTaGACTTCTGTCACATGCGTG +
Preference number: 2 (lower is better)
Translates to: GQPCSAGGTPRLKQAGLALNKIL*TSVTCV
Trigger: CACGCATGTGACAGAAGTCCACAGGATCTTATTCAA...AGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR TCA 90 bp GCTAGCATCTTACAACTGCTTCTTGCCACTCGCTACCCTGGTGGCTCTATCCCATCATGTTGTGTCAGATaGAACTGGAAAGGGGGCTGC +
Preference number: 2 (lower is better)
Translates to: ASILQLLLATRYPGGSIPSCCVR*NWKGGC
Trigger: GCAGCCCCCTTTCCAGTTTCATCTGACACAACATGA...TGGGATAGAGCCACCAGGGTAGCGAGTGGCAAGAAGCAGTTGTAAGATGCTAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR GCA 90 bp TGCGTAACAACCCTTCATACTAGACCAAAGGATGAGCAGAGGCTCTTTCTCATGGGAGCCCAGAGCAACTaGAGAAGCAGCTGGCCATGC +
Preference number: 2 (lower is better)
Translates to: CVTTLHTRPKDEQRLFLMGAQSN*RSSWPC
Trigger: GCATGGCCAGCTGCTTCTGCAGTTGCTCTGGGCTCC...CATGAGAAAGAGCCTCTGCTCATCCTTTGGTCTAGTATGAAGGGTTGTTACGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR CCA 90 bp CCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTAGGTTGGCCGGCAGGACTTGGGCCTaGCAGGGCTTCTTGCACCCC +
Preference number: 2 (lower is better)
Translates to: PFHPCRCTYKITLLVRLAGRTWA*QGFLHP
Trigger: GGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCC...GGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR GCA 90 bp GGAACTGGTTATATGCTACTGTCCAAGCAAGAAGATTTTGGGGCTAGACTCTATCCAAATTCATCCCCCTaGAGAAACTGGCCTGGCCCC +
Preference number: 2 (lower is better)
Translates to: GTGYMLLSKQEDFGARLYPNSSP*RNWPGP
Trigger: GGGGCCAGGCCAGTTTCTGCAGGGGGATGAATTTGG...ATAGAGTCTAGCCCCAAAATCTTCTTGCTTGGACAGTAGCATATAACCAGTTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR GCA 90 bp ACTTATAAAATAACTTTATTGGTTAGGTTGGCCGCCATTCATGCTTGCTTCATGCCTGGCAGGGCTTCTTaGACCCCAGTGAGCATCTCC +
Preference number: 2 (lower is better)
Translates to: TYKITLLVRLAAIHACFMPGRAS*TPVSIS
Trigger: GGAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGG...CATGAAGCAAGCATGAATGGCGGCCAACCTAACCAATAAAGTTATTTTATAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CAA 90 bp TTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTAGGTaGGCCGCCATTCATGCTTGCTTCATGCTGAGGGCTCTTCAGAGG +
Preference number: 2 (lower is better)
Translates to: FHPCRCTYKITLLVR*AAIHACFMLRALQR
Trigger: CCTCTGAAGAGCCCTCAGCATGAAGCAAGCATGAATGGCGGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CAA 90 bp CACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATaGGTTAGGTTGGCCGCCATTCATGCTTGCTTCATGCTGAGGGCT +
Preference number: 2 (lower is better)
Translates to: HQPFHPCRCTYKITL*VRLAAIHACFMLRA
Trigger: AGCCCTCAGCATGAAGCAAGCATGAATGGCGGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR GCA 90 bp CCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTAGGTTGGCCTTGGCTTTTGTGGATTaGAGTTCTGGAACCCGTAGC +
Preference number: 2 (lower is better)
Translates to: PFHPCRCTYKITLLVRLALAFVD*SSGTRS
Trigger: GCTACGGGTTCCAGAACTGCAATCCACAAAAGCCAA...GGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR TCA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTGCAAGAGGTGTGTTGTaGTGTTTTGAGGAGCAAAGA +
Preference number: 2 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVARGVL*CFEEQR
Trigger: TCTTTGCTCCTCAAAACATCACAACACACCTCTTGC...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR TCA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTCTGTTGGAAGGAGATTaGATAAGATCCTGTGGACTT +
Preference number: 2 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVLLEGD*IRSCGL
Trigger: AAGTCCACAGGATCTTATTCAATCTCCTTCCAACAG...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp GGGTGGCAGGGCATGTACCCCGAGCCCGGTGCACGGTaGACGGTACTCGGAGCCCGGAGCCAGGAGCCCAAG +
Preference number: 3 (lower is better)
Translates to: GWQGMYPEPGAR*TVLGARSQEPK
Trigger: CTTGGGCTCCTGGCTCCGGGCTCCGAGTACCGTGCACCGTGCACCGGGCTCGGGGTACATGCCCTGCCACCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp TGCAGCGGGGTGGCAGGGCATGTACCCCGAGCCCGGTaGACGGTGCACGGTACTCGGAGCCCGGAGCCAGGA +
Preference number: 3 (lower is better)
Translates to: CSGVAGHVPRAR*TVHGTRSPEPG
Trigger: TCCTGGCTCCGGGCTCCGAGTACCGTGCACCGTGCACCGGGCTCGGGGTACATGCCCTGCCACCCCGCTGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp CTAGTGTCGGCAGGACTTGGGCCTGGCAGGGCTTCTTaGACCCCAGTGAGCATCTCCACAGGGCTGGTTCCT +
Preference number: 3 (lower is better)
Translates to: LVSAGLGPGRAS*TPVSISTGLVP
Trigger: AGGAACCAGCCCTGTGGAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCCGACACTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp GAGGAAGCCAGGTCTAGTGTCGGCAGGACTTGGGCCTaGCAGGGCTTCTTGCACCCCAGTGAGCATCTCCAC +
Preference number: 3 (lower is better)
Translates to: EEARSSVGRTWA*QGFLHPSEHLH
Trigger: GTGGAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCCGACACTAGACCTGGCTTCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp AGGATGGTGATACATGCAGGTGCTTCCCAAGAACCCTaGCCAGGGCAGCCTTGCTCCGCAGGTGGCACTCCC +
Preference number: 3 (lower is better)
Translates to: RMVIHAGASQEP*PGQPCSAGGTP
Trigger: GGGAGTGCCACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTATCACCATCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp CCCACCCTGTCCTTTCCAGAGAAGCTTGCTCCCAAGTaGACACAGAGTCAGGGGTCTAAGGCAGGGACCCAC +
Preference number: 3 (lower is better)
Translates to: PTLSFPEKLAPK*TQSQGSKAGTH
Trigger: GTGGGTCCCTGCCTTAGACCCCTGACTCTGTGTGCACTTGGGAGCAAGCTTCTCTGGAAAGGACAGGGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp AGGGCTCTTCAGAGGCAGGATGGTGATACATGCAGGTaGTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTC +
Preference number: 3 (lower is better)
Translates to: RALQRQDGDTCR*FPRTLARAALL
Trigger: GAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTATCACCATCCTGCCTCTGAAGAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp AATGCAGAGGAAGCCAGGTCTAGTGTCGGCAGGACTTaGGCCTGGCAGGGCTTCTTGCACCCCAGTGAGCAT +
Preference number: 3 (lower is better)
Translates to: NAEEARSSVGRT*AWQGFLHPSEH
Trigger: ATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCCGACACTAGACCTGGCTTCCTCTGCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR CAA 90 bp GGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTTGGCTGTCTGCCTCTGCCATTaGCGTAACAACCCTTCATAC +
Preference number: 3 (lower is better)
Translates to: GQPCSAGGTPRLKQAGLAVCLCH*RNNPSY
Trigger: GTATGAAGGGTTGTTACGCAAATGGCAGAGGCAGAC...AGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR TCA 72 bp ACAGGCACCACTGGGCATAAGGCGGACTGCATAGTGTaGATGCAGAGGAAGCCAGGTCTAGTGTCGGCAGGA +
Preference number: 3 (lower is better)
Translates to: TGTTGHKADCIV*MQRKPGLVSAG
Trigger: TCCTGCCGACACTAGACCTGGCTTCCTCTGCATTCACACTATGCAGTCCGCCTTATGCCCAGTGGTGCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR TCA 72 bp CAGGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTTaGAACAAGCTGGTTTGGCTTTTGTGGATTGCAGTT +
Preference number: 3 (lower is better)
Translates to: QGSLAPQVALPG*NKLVWLLWIAV
Trigger: AACTGCAATCCACAAAAGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR TCA 72 bp TTGCTTCATGCTGAGGGCTCTTCAGAGGCAGGATGGTaGTACATGCAGGTGCTTCCCAAGAACCCTGGCCAG +
Preference number: 3 (lower is better)
Translates to: LLHAEGSSEAGW*YMQVLPKNPGQ
Trigger: CTGGCCAGGGTTCTTGGGAAGCACCTGCATGTATCACCATCCTGCCTCTGAAGAGCCCTCAGCATGAAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp TTGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTaGTTTGGCTTTTGTGGATTGCAGTTCTGGAACCCG +
Preference number: 3 (lower is better)
Translates to: LLRRWHSPVETS*FGFCGLQFWNP
Trigger: CGGGTTCCAGAACTGCAATCCACAAAAGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp GTAGGTCCTCGGCGGGTGGAGTCTGCCTCTGCCATTTaGGTAACAACCCTTCATACTAGACCAAAGGATGAG +
Preference number: 3 (lower is better)
Translates to: VGPRRVESASAI*VTTLHTRPKDE
Trigger: CTCATCCTTTGGTCTAGTATGAAGGGTTGTTACGCAAATGGCAGAGGCAGACTCCACCCGCCGAGGACCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp TTTACCACCAAATTCATCCCCCTGCAGAAACTGGCCTaGCCCCTGATCCCACCTAACTCTGCCTGTTGGAAG +
Preference number: 3 (lower is better)
Translates to: FTTKFIPLQKLA*PLIPPNSACWK
Trigger: CTTCCAACAGGCAGAGTTAGGTGGGATCAGGGGCCAGGCCAGTTTCTGCAGGGGGATGAATTTGGTGGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR CAA 90 bp AAAGAGCAGGAGCCCAGAGCAACTGCAGAAGCAGCTGGCCATGCTGTTGAGCACCCTGTTGGAAGGAGATaGAATAAGATCCTGTGGACT +
Preference number: 3 (lower is better)
Translates to: KEQEPRATAEAAGHAVEHPVGRR*NKILWT
Trigger: AGTCCACAGGATCTTATTCAATCTCCTTCCAACAGG...GTGCTCAACAGCATGGCCAGCTGCTTCTGCAGTTGCTCTGGGCTCCTGCTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp ACTCTGCCTGTTGGAAGGAGATTGAATAAGATCCTGTaGACTTCTGTCACATGCGTGTCCCAGACCATCCAG +
Preference number: 3 (lower is better)
Translates to: TLPVGRRLNKIL*TSVTCVSQTIQ
Trigger: CTGGATGGTCTGGGACACGCATGTGACAGAAGTCCACAGGATCTTATTCAATCTCCTTCCAACAGGCAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp ATCTCCACAGGGCTGGTTCCTGATGCTCTAGCATTATaGACAAACGAGCTATTGAGATCACCCCCTAGTCTG +
Preference number: 3 (lower is better)
Translates to: ISTGLVPDALAL*TNELLRSPPSL
Trigger: CAGACTAGGGGGTGATCTCAATAGCTCGTTTGTCCATAATGCTAGAGCATCAGGAACCAGCCCTGTGGAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp ATAACTTTATTGGTTAGGTTGGCCGCCATTCATGCTTaGTTCATGCTGAGGGCTCTTCAGAGGCAGGATGGT +
Preference number: 3 (lower is better)
Translates to: ITLLVRLAAIHA*FMLRALQRQDG
Trigger: ACCATCCTGCCTCTGAAGAGCCCTCAGCATGAAGCAAGCATGAATGGCGGCCAACCTAACCAATAAAGTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR CAA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTGCCTGGCAGGGCTTCTaGCACCCCAGTGAGCATCTC +
Preference number: 3 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVAWQGF*HPSEHL
Trigger: GAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGC...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp AGGAGATTGAATAAGATCCTGTGGACTTCTGTCACATaGGTGTCCCAGACCATCCAGCAAAAGCCAAACATG +
Preference number: 3 (lower is better)
Translates to: RRLNKILWTSVT*VSQTIQQKPNM
Trigger: CATGTTTGGCTTTTGCTGGATGGTCTGGGACACGCATGTGACAGAAGTCCACAGGATCTTATTCAATCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp GCCGAGGGCTGCCACCAACCATTCCATCCTTGCAGATaGACTTATAAAATAACTTTATTGGTTAGGTTGGCC +
Preference number: 3 (lower is better)
Translates to: AEGCHQPFHPCR*TYKITLLVRLA
Trigger: GGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR GCA 72 bp GGCGATGCCGAGGGCTGCCACCAACCATTCCATCCTTaGAGATGCACTTATAAAATAACTTTATTGGTTAGG +
Preference number: 3 (lower is better)
Translates to: GDAEGCHQPFHP*RCTYKITLLVR
Trigger: CCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGCATCGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp GGTGGCTCTATCCCAGTGGGGTCTAGAAGAAGCTGTTaGTTGTACCTAGGCAATATCACCTTTAAAAAGGAG +
Preference number: 3 (lower is better)
Translates to: GGSIPVGSRRSC*LYLGNITFKKE
Trigger: CTCCTTTTTAAAGGTGATATTGCCTAGGTACAACCAACAGCTTCTTCTAGACCCCACTGGGATAGAGCCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CCA 72 bp CTTCCCCATCTTACTATGGATACTGATAATGACCACTaGACACTTCCCTCCTCTGATAGATCCTCCATTATA +
Preference number: 3 (lower is better)
Translates to: LPHLTMDTDNDH*TLPSSDRSSII
Trigger: TATAATGGAGGATCTATCAGAGGAGGGAAGTGTCCAGTGGTCATTATCAGTATCCATAGTAAGATGGGGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR-3UTR CAA 90 bp CGGTTATCCCCTATGTTAACAGCTCATCATTATGGTGTTCAATATGGTGACTTTGTGTGTTGTGATGTTTaGAGGAGCAAAGAGCAGGAG +
Preference number: 3 (lower is better)
Translates to: RLSPMLTAHHYGVQYGDFVCCDV*RSKEQE
Trigger: CTCCTGCTCTTTGCTCCTCAAAACATCACAACACAC...AAAGTCACCATATTGAACACCATAATGATGAGCTGTTAACATAGGGGATAACCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR TCA 72 bp ATCATTATGGTGTTCAATATGGTGACTTTAAACAGGTaGGGTGGGGGTAAGTGTGTGATTTTAGCCATCCGT +
Preference number: 3 (lower is better)
Translates to: IIMVFNMVTLNR*GGGKCVILAIR
Trigger: ACGGATGGCTAAAATCACACACTTACCCCCACCTCACCTGTTTAAAGTCACCATATTGAACACCATAATGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp AGGGCATGTACCCCGAGCCCGGTGCACGGTGCACGGTACTCGGAGCCCGGAGCCGGACGTACAGCAGCTTaGGTGACCCCCGGAAGTAGC +
Preference number: 4 (lower is better)
Translates to: RACTPSPVHGARYSEPGAGRTAA*VTPGSS
Trigger: GCTACTTCCGGGGGTCACCCAAGCTGCTGTACGTCC...GGCTCCGGGCTCCGAGTACCGTGCACCGTGCACCGGGCTCGGGGTACATGCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp ATACATGCAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTCCGCAGGTGGAGATATAAGGCCGTaGGGTTCTCCAGGCCCTCCA +
Preference number: 4 (lower is better)
Translates to: IHAGASQEPWPGQPCSAGGDIRP*GSPGPP
Trigger: TGGAGGGCCTGGAGAACCTCACGGCCTTATATCTCC...ACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp GGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTTGGCTGCTTGGAGAAGTTCATaGCGTCCACCACCGTGCAGA +
Preference number: 4 (lower is better)
Translates to: GQPCSAGGTPRLKQAGLAAWRSS*RPPPCR
Trigger: TCTGCACGGTGGTGGACGTCATGAACTTCTCCAAGC...AGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp GGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTTGGCTACAATCACGGGGCTCTaGTGGAGGTGGTGCACCATA +
Preference number: 4 (lower is better)
Translates to: GQPCSAGGTPRLKQAGLATITGL*WRWCTI
Trigger: TATGGTGCACCACCTCCACCAGAGCCCCGTGATTGT...AGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR GCA 90 bp GGCAGGACTTGGGCCTGGCAGGGCTTCTTGCACCCCAGTGAGCATCTCCACAGGAGTAGACGTACTTCATaGGGGAGGGCACAAAAGGCA +
Preference number: 4 (lower is better)
Translates to: GRTWAWQGFLHPSEHLHRSRRTS*GRAQKA
Trigger: TGCCTTTTGTGCCCTCCCGCATGAAGTACGTCTACT...CCTGTGGAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR GCA 90 bp AAATTCATCCCCCTGCAGAAACTGGCCTGGCCCCTGATCCCACCTAACTCTGCCGGCGTCCACCGGCATTaGGCTGCGCTTGATCTCGTT +
Preference number: 4 (lower is better)
Translates to: KFIPLQKLAWPLIPPNSAGVHRH*AALDLV
Trigger: AACGAGATCAAGCGCAGCGCAATGCCGGTGGACGCC...GGCAGAGTTAGGTGGGATCAGGGGCCAGGCCAGTTTCTGCAGGGGGATGAATTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp ATACATGCAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTCCGCAGGTTCTCCAGGTTGGTGTTaGCAGGAGGGATCTTCTGCA +
Preference number: 4 (lower is better)
Translates to: IHAGASQEPWPGQPCSAGSPGWC*QEGSSA
Trigger: TGCAGAAGATCCCTCCTGTCAACACCAACCTGGAGA...ACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR GCA 90 bp AAAGAGCAGGAGCCCAGAGCAACTGCAGAAGCAGCTGGCCATGCTGTTGAGCACCTCTGGTGGAGGTGGTaGACCATAGGCATAGGCTGG +
Preference number: 4 (lower is better)
Translates to: KEQEPRATAEAAGHAVEHLWWRW*TIGIGW
Trigger: CCAGCCTATGCCTATGGTGCACCACCTCCACCAGAG...GTGCTCAACAGCATGGCCAGCTGCTTCTGCAGTTGCTCTGGGCTCCTGCTCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp GGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTTGGCTGAGTCTTCATCATACTaGCCCTGGGAAAGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: GQPCSAGGTPRLKQAGLAESSSY*PWESEQ
Trigger: CTGCTCACTTTCCCAGGGCCAGTATGATGAAGACTC...AGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CAA 72 bp CCAGGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTaGAAACAAGCTGGTTTGGCTTTTGTGGATTGCAGT +
Preference number: 4 (lower is better)
Translates to: PGQPCSAGGTPR*KQAGLAFVDCS
Trigger: ACTGCAATCCACAAAAGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp GCTAGCATCTTACAACTGCTTCTTGCCACTCGCTACCCTGGTGGCTCTATCCCAGTACAGCAGCTTGGGTaGCCCCCGGAAGTAGCTGTC +
Preference number: 4 (lower is better)
Translates to: ASILQLLLATRYPGGSIPVQQLG*PPEVAV
Trigger: GACAGCTACTTCCGGGGGTCACCCAAGCTGCTGTAC...TGGGATAGAGCCACCAGGGTAGCGAGTGGCAAGAAGCAGTTGTAAGATGCTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp GCTAGCATCTTACAACTGCTTCTTGCCACTCGCTACCCTGGTGGCTCTATCCCAGCATTGCGCTGCGCTTaGTCTCGTTCCCATCCAGGC +
Preference number: 4 (lower is better)
Translates to: ASILQLLLATRYPGGSIPALRCA*SRSHPG
Trigger: GCCTGGATGGGAACGAGATCAAGCGCAGCGCAATGC...TGGGATAGAGCCACCAGGGTAGCGAGTGGCAAGAAGCAGTTGTAAGATGCTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR GCA 90 bp AAATTCATCCCCCTGCAGAAACTGGCCTGGCCCCTGATCCCACCTAACTCTGCCTGTTCTAGGTACAGCTaGTCCAGGGCTGAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: KFIPLQKLAWPLIPPNSACSRYS*SRAEGR
Trigger: TCTGCCCTCAGCCCTGGAGCAGCTGTACCTAGAACA...GGCAGAGTTAGGTGGGATCAGGGGCCAGGCCAGTTTCTGCAGGGGGATGAATTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp GGGCAGCCTTGCTCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTTGGCTTCCTGGATCTCATTGTaGTGGAGATATAAGGCCGTG +
Preference number: 4 (lower is better)
Translates to: GQPCSAGGTPRLKQAGLASWISL*WRYKAV
Trigger: CACGGCCTTATATCTCCACCACAATGAGATCCAGGA...AGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGAGCAAGGCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp ATACATGCAGGTGCTTCCCAAGAACCCTGGCCAGGGCAGCCTTGCTCCGCAGGTTTGTCACTGGTAATCTaGTTGCCATGTAGAGCGACC +
Preference number: 4 (lower is better)
Translates to: IHAGASQEPWPGQPCSAGLSLVI*LPCRAT
Trigger: GGTCGCTCTACATGGCAACCAGATTACCAGTGACAA...ACCTGCGGAGCAAGGCTGCCCTGGCCAGGGTTCTTGGGAAGCACCTGCATGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CAA 72 bp TCCGCAGGTGGCACTCCCCGGTTGAAACAAGCTGGTTaGGCTTTTGTGGATTGCAGTTCTGGAACCCGTAGC +
Preference number: 4 (lower is better)
Translates to: SAGGTPRLKQAG*AFVDCSSGTRS
Trigger: GCTACGGGTTCCAGAACTGCAATCCACAAAAGCCAAACCAGCTTGTTTCAACCGGGGAGTGCCACCTGCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR GCA 90 bp AAATTCATCCCCCTGCAGAAACTGGCCTGGCCCCTGATCCCACCTAACTCTGCCTACAGCCTCTCCAAGTaGCTCAGCTTGGAGAAGACT +
Preference number: 4 (lower is better)
Translates to: KFIPLQKLAWPLIPPNSAYSLSK*LSLEKT
Trigger: AGTCTTCTCCAAGCTGAGGCACTTGGAGAGGCTGTA...GGCAGAGTTAGGTGGGATCAGGGGCCAGGCCAGTTTCTGCAGGGGGATGAATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp TGTCAGATGAAACTGGAAAGGGGGCTGCCCCTTCAGTTCTGCTATCCTGAGGTGGGTTGTCACAGTACATaGCTGTGGGGAAGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: CQMKLERGLPLQFCYPEVGCHST*LWGSWG
Trigger: CCCCCAACTTCCCCACAGCCATGTACTGTGACAACC...CACCTCAGGATAGCAGAACTGAAGGGGCAGCCCCCTTTCCAGTTTCATCTGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp AAAGAGCAGGAGCCCAGAGCAACTGCAGAAGCAGCTGGCCATGCTGTTGAGCACCCAAGTGCCTCAGCTTaGAGAAGACTTTCCTGCCTA +
Preference number: 4 (lower is better)
Translates to: KEQEPRATAEAAGHAVEHPSASA*RRLSCL
Trigger: TAGGCAGGAAAGTCTTCTCCAAGCTGAGGCACTTGG...GTGCTCAACAGCATGGCCAGCTGCTTCTGCAGTTGCTCTGGGCTCCTGCTCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp GCTAGCATCTTACAACTGCTTCTTGCCACTCGCTACCCTGGTGGCTCTATCCCACCTCCAAAGCATTGTTaGGGACCCGTGAGATCTGGT +
Preference number: 4 (lower is better)
Translates to: ASILQLLLATRYPGGSIPPPKHC*GPVRSG
Trigger: ACCAGATCTCACGGGTCCCCAACAATGCTTTGGAGG...TGGGATAGAGCCACCAGGGTAGCGAGTGGCAAGAAGCAGTTGTAAGATGCTAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp AAGGTCAAATTGGAACTGGTTATATGCTACTGTCCAAGCAAGAAGATTTTGGGGCAGCTGCTCCAGGGCTaGGGGCAGACCGTCGGGTAC +
Preference number: 4 (lower is better)
Translates to: KVKLELVICYCPSKKILGQLLQG*GQTVGY
Trigger: GTACCCGACGGTCTGCCCTCAGCCCTGGAGCAGCTG...CCCCAAAATCTTCTTGCTTGGACAGTAGCATATAACCAGTTCCAATTTGACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp TGTCAGATGAAACTGGAAAGGGGGCTGCCCCTTCAGTTCTGCTATCCTGAGGTGGAACTCCCCACTTCCTaGATCTCATTGTGGTGGAGA +
Preference number: 4 (lower is better)
Translates to: CQMKLERGLPLQFCYPEVELPTS*ISLWWR
Trigger: TCTCCACCACAATGAGATCCAGGAAGTGGGGAGTTC...CACCTCAGGATAGCAGAACTGAAGGGGCAGCCCCCTTTCCAGTTTCATCTGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp CCCTTCATACTAGACCAAAGGATGAGCAGAGGCTCTTTCTCATGTTTTGAAAACGGGACCCGTGAGATCTaGTTGTGGTCCAGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: PFILDQRMSRGSFSCFENGTREI*LWSRWS
Trigger: GCTCCACCTGGACCACAACCAGATCTCACGGGTCCC...GTTTTCAAAACATGAGAAAGAGCCTCTGCTCATCCTTTGGTCTAGTATGAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp GGAACTGGTTATATGCTACTGTCCAAGCAAGAAGATTTTGGGGCTAGACTCTATATTGTTGGGGACCCGTaGGATCTGGTTGTGGTCCAG +
Preference number: 4 (lower is better)
Translates to: GTGYMLLSKQEDFGARLYIVGDP*DLVVVQ
Trigger: CTGGACCACAACCAGATCTCACGGGTCCCCAACAAT...ATAGAGTCTAGCCCCAAAATCTTCTTGCTTGGACAGTAGCATATAACCAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp CCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTAGGTTGGCCACCGGAGGCCTCTCATaGAACTCCCCACTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: PFHPCRCTYKITLLVRLATGGLS*NSPLPG
Trigger: TCCAGGAAGTGGGGAGTTCCATGAGAGGCCTCCGGT...GGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR TCA 90 bp AAGGTCAAATTGGAACTGGTTATATGCTACTGTCCAAGCAAGAAGATTTTGGGGCAAAAGGCAGGTACTTaGGGTTGCGGTTGTCACAGT +
Preference number: 4 (lower is better)
Translates to: KVKLELVICYCPSKKILGQKAGT*GCGCHS
Trigger: ACTGTGACAACCGCAACCTCAAGTACCTGCCTTTTG...CCCCAAAATCTTCTTGCTTGGACAGTAGCATATAACCAGTTCCAATTTGACCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR GCA 90 bp CGGTTATCCCCTATGTTAACAGCTCATCATTATGGTGTTCAATATGGTGACTTTTCCAGGCGTAGCACCTaGAGCTTGGAGAAGTTCATG +
Preference number: 4 (lower is better)
Translates to: RLSPMLTAHHYGVQYGDFSRRST*SLEKFM
Trigger: CATGAACTTCTCCAAGCTGCAGGTGCTACGCCTGGA...AAAGTCACCATATTGAACACCATAATGATGAGCTGTTAACATAGGGGATAACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTAGGGGTCGTAGTAGGTaGACTGCTGGTTTCGGAGGT +
Preference number: 4 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVRGRSR*TAGFGG
Trigger: ACCTCCGAAACCAGCAGTCCACCTACTACGACCCCT...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp ACTTATAAAATAACTTTATTGGTTAGGTTGGCCGCCATTCATGCTTGCTTCATGCGTGAGATCTGGTTGTaGTCCAGGTGGAGCTCTCTC +
Preference number: 4 (lower is better)
Translates to: TYKITLLVRLAAIHACFMREIWL*SRWSSL
Trigger: GAGAGAGCTCCACCTGGACCACAACCAGATCTCACG...CATGAAGCAAGCATGAATGGCGGCCAACCTAACCAATAAAGTTATTTTATAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp CGGTTATCCCCTATGTTAACAGCTCATCATTATGGTGTTCAATATGGTGACTTTACCATAGGCATAGGCTaGGCCTTCTTCCACTCCATA +
Preference number: 4 (lower is better)
Translates to: RLSPMLTAHHYGVQYGDFTIGIG*AFFHSI
Trigger: TATGGAGTGGAAGAAGGCCCAGCCTATGCCTATGGT...AAAGTCACCATATTGAACACCATAATGATGAGCTGTTAACATAGGGGATAACCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CAA 72 bp TGCAGATGCACTTATAAAATAACTTTATTGGTTAGGTaGGCCGCCATTCATGCTTGCTTCATGCTGAGGGCT +
Preference number: 4 (lower is better)
Translates to: CRCTYKITLLVR*AAIHACFMLRA
Trigger: AGCCCTCAGCATGAAGCAAGCATGAATGGCGGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp CGGTTATCCCCTATGTTAACAGCTCATCATTATGGTGTTCAATATGGTGACTTTAGACACCTTCCTGGATaGCAGAGATCTGGTTGTTCT +
Preference number: 4 (lower is better)
Translates to: RLSPMLTAHHYGVQYGDFRHLPG*QRSGCS
Trigger: AGAACAACCAGATCTCTGCCATCCAGGAAGGTGTCT...AAAGTCACCATATTGAACACCATAATGATGAGCTGTTAACATAGGGGATAACCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CCA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTTGGATCTCATTGTGGTaGAGATATAAGGCCGTGAGG +
Preference number: 4 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVWISLW*RYKAVR
Trigger: CCTCACGGCCTTATATCTCCACCACAATGAGATCCA...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
3UTR CAA 72 bp GAACTGGTTATATGCTACTGTCCAAGCAAGAAGATTTaGGGGCTAGACTCTATAGCTATATTTCTTTTACCA +
Preference number: 4 (lower is better)
Translates to: ELVICYCPSKKI*GLDSIAIFLLP
Trigger: TGGTAAAAGAAATATAGCTATAGAGTCTAGCCCCAAAATCTTCTTGCTTGGACAGTAGCATATAACCAGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp TCCAGGCCCTCCAAAGCATTGTTGGGGACCCGTGAGATCTGGTTGTaGTCCAGGTGGAGCTCTCTCAGGGATCGGGGCAGCGGGCCGGGC +
Preference number: 5 (lower is better)
Translates to: SRPSKALLGTREIWL*SRWSSLRDRGSGPG
Trigger: GCCCGGCCCGCTGCCCCGATCCCTGAGAGAGCTCCACCTGGACCACAACCAGATCTCACGGGTCCCCAACAATGCTTTGGAGGGCCTGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp AGGGCATGTACCCCGAGCCCGGTGCACGGTGCACGGTACTCGGAGCCCGGAGCCCGTAGCACCTGCAGCTaGGAGAAGTTCATGACGTCC +
Preference number: 5 (lower is better)
Translates to: RACTPSPVHGARYSEPGARSTCS*EKFMTS
Trigger: GGACGTCATGAACTTCTCCAAGCTGCAGGTGCTACG...GGCTCCGGGCTCCGAGTACCGTGCACCGTGCACCGGGCTCGGGGTACATGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 90 bp CGAGGCGCAGGCAGAGTGGGGCGTCCACCGGCATTGCGCTGCGCTTaGTCTCGTTCCCATCCAGGCGTAGCACCTGCAGCTTGGAGAAGT +
Preference number: 5 (lower is better)
Translates to: RGAGRVGRPPALRCA*SRSHPGVAPAAWRS
Trigger: ACTTCTCCAAGCTGCAGGTGCTACGCCTGGATGGGAACGAGATCAAGCGCAGCGCAATGCCGGTGGACGCCCCACTCTGCCTGCGCCTCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp GGCAGGACTTGGGCCTGGCAGGGCTTCTTGCACCCCAGTGAGCATCTCCACAGGCAGATCTCGATGAGGTaGGCGAGGCGCAGGCAGAGT +
Preference number: 5 (lower is better)
Translates to: GRTWAWQGFLHPSEHLHRQISMR*ARRRQS
Trigger: ACTCTGCCTGCGCCTCGCCAACCTCATCGAGATCTG...CCTGTGGAGATGCTCACTGGGGTGCAAGAAGCCCTGCCAGGCCCAAGTCCTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp AGGTTCTCCAGGCCCTCCAAAGCATTGTTGGGGACCCGTGAGATCTaGTTGTGGTCCAGGTGGAGCTCTCTCAGGGATCGGGGCAGCGGG +
Preference number: 5 (lower is better)
Translates to: RFSRPSKALLGTREI*LWSRWSSLRDRGSG
Trigger: CCCGCTGCCCCGATCCCTGAGAGAGCTCCACCTGGACCACAACCAGATCTCACGGGTCCCCAACAATGCTTTGGAGGGCCTGGAGAACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp CCCGAGGCGATGCCGAGGGCTGCCACCAACCATTCCATCCTTGCAGATGCACTTGGCATTGCGCTGCGCTaGATCTCGTTCCCATCCAGG +
Preference number: 5 (lower is better)
Translates to: PEAMPRAATNHSILADALGIALR*ISFPSR
Trigger: CCTGGATGGGAACGAGATCAAGCGCAGCGCAATGCC...AAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGCATCGCCTCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp GGGACAGTCGCATTCTTGGGGACAATCACGGGGCTCTGGTGGAGGTaGTGCACCATAGGCATAGGCTGGGCCTTCTTCCACTCCATAGGG +
Preference number: 5 (lower is better)
Translates to: GTVAFLGTITGLWWR*CTIGIGWAFFHSIG
Trigger: CCCTATGGAGTGGAAGAAGGCCCAGCCTATGCCTATGGTGCACCACCTCCACCAGAGCCCCGTGATTGTCCCCAAGAATGCGACTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS-3UTR CAA 90 bp CCCGAGGCGATGCCGAGGGCTGCCACCAACCATTCCATCCTTGCAGATGCACTTAGGCCCTCCAAAGCATaGTTGGGGACCCGTGAGATC +
Preference number: 5 (lower is better)
Translates to: PEAMPRAATNHSILADALRPSKA*LGTREI
Trigger: GATCTCACGGGTCCCCAACAATGCTTTGGAGGGCCT...AAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGCATCGCCTCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS GCA 90 bp GGCATTGCGCTGCGCTTGATCTCGTTCCCATCCAGGCGTAGCACCTaGAGCTTGGAGAAGTTCATGACGTCCACCACCGTGCAGAAGCTG +
Preference number: 5 (lower is better)
Translates to: GIALRLISFPSRRST*SLEKFMTSTTVQKL
Trigger: CAGCTTCTGCACGGTGGTGGACGTCATGAACTTCTCCAAGCTGCAGGTGCTACGCCTGGATGGGAACGAGATCAAGCGCAGCGCAATGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp CCCGAGGCGATGCCGAGGGCTGCCACCAACCATTCCATCCTTGCAGATGCACTTTCACTGGTAATCTGGTaGCCATGTAGAGCGACCCAG +
Preference number: 5 (lower is better)
Translates to: PEAMPRAATNHSILADALSLVIW*PCRATQ
Trigger: CTGGGTCGCTCTACATGGCAACCAGATTACCAGTGA...AAGTGCATCTGCAAGGATGGAATGGTTGGTGGCAGCCCTCGGCATCGCCTCGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp GACCGGAGGCCTCTCATGGAACTCCCCACTTCCTGGATCTCATTGTaGTGGAGATATAAGGCCGTGAGGTTCTCCAGGCCCTCCAAAGCA +
Preference number: 5 (lower is better)
Translates to: DRRPLMELPTSWISL*WRYKAVRFSRPSKA
Trigger: TGCTTTGGAGGGCCTGGAGAACCTCACGGCCTTATATCTCCACCACAATGAGATCCAGGAAGTGGGGAGTTCCATGAGAGGCCTCCGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 90 bp GGAAGTAGACGTACTTCATGCGGGAGGGCACAAAAGGCAGGTACTTaGGGTTGCGGTTGTCACAGTACATGGCTGTGGGGAAGTTGGGGG +
Preference number: 5 (lower is better)
Translates to: GSRRTSCGRAQKAGT*GCGCHSTWLWGSWG
Trigger: CCCCCAACTTCCCCACAGCCATGTACTGTGACAACCGCAACCTCAAGTACCTGCCTTTTGTGCCCTCCCGCATGAAGTACGTCTACTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp CGGAGGCCTCTCATGGAACTCCCCACTTCCTGGATCTCATTGTGGTaGAGATATAAGGCCGTGAGGTTCTCCAGGCCCTCCAAAGCATTG +
Preference number: 5 (lower is better)
Translates to: RRPLMELPTSWISLW*RYKAVRFSRPSKAL
Trigger: CAATGCTTTGGAGGGCCTGGAGAACCTCACGGCCTTATATCTCCACCACAATGAGATCCAGGAAGTGGGGAGTTCCATGAGAGGCCTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 90 bp GTTAGTGAGACTGTTGTGAGACAACCGGACGTACAGCAGCTTGGGTaGCCCCCGGAAGTAGCTGTCAGGGACGGTGTAGACATTGTTGTG +
Preference number: 5 (lower is better)
Translates to: VSETVVRQPDVQQLG*PPEVAVRDGVDIVV
Trigger: CACAACAATGTCTACACCGTCCCTGACAGCTACTTCCGGGGGTCACCCAAGCTGCTGTACGTCCGGTTGTCTCACAACAGTCTCACTAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS GCA 90 bp GGCATCCGGGTCAGGTTGTTGTGGTCCAAGTACAGCCTCTCCAAGTaGCTCAGCTTGGAGAAGACTTTCCTGCCTACCTTGTCACTGGTA +
Preference number: 5 (lower is better)
Translates to: GIRVRLLWSKYSLSK*LSLEKTFLPTLSLV
Trigger: TACCAGTGACAAGGTAGGCAGGAAAGTCTTCTCCAAGCTGAGGCACTTGGAGAGGCTGTACTTGGACCACAACAACCTGACCCGGATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp GCTCAGAGGGCTCATAGGGGTAAGGGTCATAGGGGTCGTAGTAGGTaGACTGCTGGTTTCGGAGGTATTGGATCCACCAGTGAGAGTCTT +
Preference number: 5 (lower is better)
Translates to: AQRAHRGKGHRGRSR*TAGFGGIGSTSESL
Trigger: AAGACTCTCACTGGTGGATCCAATACCTCCGAAACCAGCAGTCCACCTACTACGACCCCTATGACCCTTACCCCTATGAGCCCTCTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS CCA 90 bp CGACCCAGAGGAGCCCAGTGGCATTGTCAAAGACACCTTCCTGGATaGCAGAGATCTGGTTGTTCTGGAAGTAGACGTACTTCATGCGGG +
Preference number: 5 (lower is better)
Translates to: RPRGAQWHCQRHLPG*QRSGCSGSRRTSCG
Trigger: CCCGCATGAAGTACGTCTACTTCCAGAACAACCAGATCTCTGCCATCCAGGAAGGTGTCTTTGACAATGCCACTGGGCTCCTCTGGGTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp CTCAGCTTGGAGAAGACTTTCCTGCCTACCTTGTCACTGGTAATCTaGTTGCCATGTAGAGCGACCCAGAGGAGCCCAGTGGCATTGTCA +
Preference number: 5 (lower is better)
Translates to: LSLEKTFLPTLSLVI*LPCRATQRSPVALS
Trigger: TGACAATGCCACTGGGCTCCTCTGGGTCGCTCTACATGGCAACCAGATTACCAGTGACAAGGTAGGCAGGAAAGTCTTCTCCAAGCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp AAATTCATCCCCCTGCAGAAACTGGCCTGGCCCCTGATCCCACCTAACTCTGCCACTTTCCTGCCTACCTaGTCACTGGTAATCTGGTTG +
Preference number: 5 (lower is better)
Translates to: KFIPLQKLAWPLIPPNSATFLPT*SLVIWL
Trigger: CAACCAGATTACCAGTGACAAGGTAGGCAGGAAAGT...GGCAGAGTTAGGTGGGATCAGGGGCCAGGCCAGTTTCTGCAGGGGGATGAATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp TGTCAGATGAAACTGGAAAGGGGGCTGCCCCTTCAGTTCTGCTATCCTGAGGTGTTCTCCAGGTTGGTGTaGACAGGAGGGATCTTCTGC +
Preference number: 5 (lower is better)
Translates to: CQMKLERGLPLQFCYPEVFSRLV*TGGIFC
Trigger: GCAGAAGATCCCTCCTGTCAACACCAACCTGGAGAA...CACCTCAGGATAGCAGAACTGAAGGGGCAGCCCCCTTTCCAGTTTCATCTGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 90 bp GGTTATAACTCAGGTCTAGTAGGATCAGGGACCGGAGGCCTCTCATaGAACTCCCCACTTCCTGGATCTCATTGTGGTGGAGATATAAGG +
Preference number: 5 (lower is better)
Translates to: GYNSGLVGSGTGGLS*NSPLPGSHCGGDIR
Trigger: CCTTATATCTCCACCACAATGAGATCCAGGAAGTGGGGAGTTCCATGAGAGGCCTCCGGTCCCTGATCCTACTAGACCTGAGTTATAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp AAAGCCCAAGAAGGGGTGCAGATCATGTTGTGTCAGATGAAACTGGAAAGGGGGTCCAAGTGCCTCAGCTaGGAGAAGACTTTCCTGCCT +
Preference number: 5 (lower is better)
Translates to: KAQEGVQIMLCQMKLERGSKCLS*EKTFLP
Trigger: AGGCAGGAAAGTCTTCTCCAAGCTGAGGCACTTGGA...CCCCCTTTCCAGTTTCATCTGACACAACATGATCTGCACCCCTTCTTGGGCTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp TGCGTAACAACCCTTCATACTAGACCAAAGGATGAGCAGAGGCTCTTTCTCATGATCCGGGTCAGGTTGTaGTGGTCCAAGTACAGCCTC +
Preference number: 5 (lower is better)
Translates to: CVTTLHTRPKDEQRLFLMIRVRL*WSKYSL
Trigger: GAGGCTGTACTTGGACCACAACAACCTGACCCGGAT...CATGAGAAAGAGCCTCTGCTCATCCTTTGGTCTAGTATGAAGGGTTGTTACGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp TGCGTAACAACCCTTCATACTAGACCAAAGGATGAGCAGAGGCTCTTTCTCATGGGCAGGTACTTGAGGTaGCGGTTGTCACAGTACATG +
Preference number: 5 (lower is better)
Translates to: CVTTLHTRPKDEQRLFLMGRYLR*RLSQYM
Trigger: CATGTACTGTGACAACCGCAACCTCAAGTACCTGCC...CATGAGAAAGAGCCTCTGCTCATCCTTTGGTCTAGTATGAAGGGTTGTTACGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp CCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTAGGTTGGCCACCCGTGAGATCTGGTaGTGGTCCAGGTGGAGCTCT +
Preference number: 5 (lower is better)
Translates to: PFHPCRCTYKITLLVRLATREIW*WSRWSS
Trigger: AGAGCTCCACCTGGACCACAACCAGATCTCACGGGT...GGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp CCCTTCATACTAGACCAAAGGATGAGCAGAGGCTCTTTCTCATGTTTTGAAAACTACTTGAGGTTGCGGTaGTCACAGTACATGGCTGTG +
Preference number: 5 (lower is better)
Translates to: PFILDQRMSRGSFSCFENYLRLR*SQYMAV
Trigger: CACAGCCATGTACTGTGACAACCGCAACCTCAAGTA...GTTTTCAAAACATGAGAAAGAGCCTCTGCTCATCCTTTGGTCTAGTATGAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp CCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTAGGTTGGCCAGGAGCCCAGTGGCATaGTCAAAGACACCTTCCTGG +
Preference number: 5 (lower is better)
Translates to: PFHPCRCTYKITLLVRLARSPVA*SKTPSW
Trigger: CCAGGAAGGTGTCTTTGACAATGCCACTGGGCTCCT...GGCCAACCTAACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTGGCATCCGGGTCAGGTaGTTGTGGTCCAAGTACAGC +
Preference number: 5 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVGIRVR*LWSKYS
Trigger: GCTGTACTTGGACCACAACAACCTGACCCGGATGCC...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTCCCTCCAAAGCATTGTaGGGGACCCGTGAGATCTGG +
Preference number: 5 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVPSKAL*GTREIW
Trigger: CCAGATCTCACGGGTCCCCAACAATGCTTTGGAGGG...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS-3UTR CAA 90 bp TGCCACCAACCATTCCATCCTTGCAGATGCACTTATAAAATAACTTTATTGGTTACTTCCTGGATCTCATaGTGGTGGAGATATAAGGCC +
Preference number: 5 (lower is better)
Translates to: CHQPFHPCRCTYKITLLVTSWIS*WWRYKA
Trigger: GGCCTTATATCTCCACCACAATGAGATCCAGGAAGT...AACCAATAAAGTTATTTTATAAGTGCATCTGCAAGGATGGAATGGTTGGTGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 90 bp GCGAGGCGCAGGCAGAGTGGGGCGTCCACCGGCATTGCGCTGCGCTaGATCTCGTTCCCATCCAGGCGTAGCACCTGCAGCTTGGAGAAG +
Preference number: 6 (lower is better)
Translates to: ARRRQSGASTGIALR*ISFPSRRSTCSLEK
Trigger: CTTCTCCAAGCTGCAGGTGCTACGCCTGGATGGGAACGAGATCAAGCGCAGCGCAATGCCGGTGGACGCCCCACTCTGCCTGCGCCTCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 72 bp AGGGATCGGGGCAGCGGGCCGGGCATCCGGGTCAGGTaGTTGTGGTCCAAGTACAGCCTCTCCAAGTGCCTC +
Preference number: 6 (lower is better)
Translates to: RDRGSGPGIRVR*LWSKYSLSKCL
Trigger: GAGGCACTTGGAGAGGCTGTACTTGGACCACAACAACCTGACCCGGATGCCCGGCCCGCTGCCCCGATCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 90 bp AGCTCTCTCAGGGATCGGGGCAGCGGGCCGGGCATCCGGGTCAGGTaGTTGTGGTCCAAGTACAGCCTCTCCAAGTGCCTCAGCTTGGAG +
Preference number: 6 (lower is better)
Translates to: SSLRDRGSGPGIRVR*LWSKYSLSKCLSLE
Trigger: CTCCAAGCTGAGGCACTTGGAGAGGCTGTACTTGGACCACAACAACCTGACCCGGATGCCCGGCCCGCTGCCCCGATCCCTGAGAGAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 90 bp TTCTCCAGGCCCTCCAAAGCATTGTTGGGGACCCGTGAGATCTGGTaGTGGTCCAGGTGGAGCTCTCTCAGGGATCGGGGCAGCGGGCCG +
Preference number: 6 (lower is better)
Translates to: FSRPSKALLGTREIW*WSRWSSLRDRGSGP
Trigger: CGGCCCGCTGCCCCGATCCCTGAGAGAGCTCCACCTGGACCACAACCAGATCTCACGGGTCCCCAACAATGCTTTGGAGGGCCTGGAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 72 bp GGGACAGTCGCATTCTTGGGGACAATCACGGGGCTCTaGTGGAGGTGGTGCACCATAGGCATAGGCTGGGCC +
Preference number: 6 (lower is better)
Translates to: GTVAFLGTITGL*WRWCTIGIGWA
Trigger: GGCCCAGCCTATGCCTATGGTGCACCACCTCCACCAGAGCCCCGTGATTGTCCCCAAGAATGCGACTGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS CCA 72 bp GCATTCTTGGGGACAATCACGGGGCTCTGGTGGAGGTaGTGCACCATAGGCATAGGCTGGGCCTTCTTCCAC +
Preference number: 6 (lower is better)
Translates to: AFLGTITGLWWR*CTIGIGWAFFH
Trigger: GTGGAAGAAGGCCCAGCCTATGCCTATGGTGCACCACCTCCACCAGAGCCCCGTGATTGTCCCCAAGAATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS CAA 90 bp GCGCTGCGCTTGATCTCGTTCCCATCCAGGCGTAGCACCTGCAGCTaGGAGAAGTTCATGACGTCCACCACCGTGCAGAAGCTGCTGATG +
Preference number: 6 (lower is better)
Translates to: ALRLISFPSRRSTCS*EKFMTSTTVQKLLM
Trigger: CATCAGCAGCTTCTGCACGGTGGTGGACGTCATGAACTTCTCCAAGCTGCAGGTGCTACGCCTGGATGGGAACGAGATCAAGCGCAGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 72 bp ACTGTTGTGAGACAACCGGACGTACAGCAGCTTGGGTaGCCCCCGGAAGTAGCTGTCAGGGACGGTGTAGAC +
Preference number: 6 (lower is better)
Translates to: TVVRQPDVQQLG*PPEVAVRDGVD
Trigger: GTCTACACCGTCCCTGACAGCTACTTCCGGGGGTCACCCAAGCTGCTGTACGTCCGGTTGTCTCACAACAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS GCA 72 bp CTGCGCTTGATCTCGTTCCCATCCAGGCGTAGCACCTaGAGCTTGGAGAAGTTCATGACGTCCACCACCGTG +
Preference number: 6 (lower is better)
Translates to: LRLISFPSRRST*SLEKFMTSTTV
Trigger: CACGGTGGTGGACGTCATGAACTTCTCCAAGCTGCAGGTGCTACGCCTGGATGGGAACGAGATCAAGCGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 72 bp AGGGACCGGAGGCCTCTCATGGAACTCCCCACTTCCTaGATCTCATTGTGGTGGAGATATAAGGCCGTGAGG +
Preference number: 6 (lower is better)
Translates to: RDRRPLMELPTS*ISLWWRYKAVR
Trigger: CCTCACGGCCTTATATCTCCACCACAATGAGATCCAGGAAGTGGGGAGTTCCATGAGAGGCCTCCGGTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 72 bp CGTACTTCATGCGGGAGGGCACAAAAGGCAGGTACTTaGGGTTGCGGTTGTCACAGTACATGGCTGTGGGGA +
Preference number: 6 (lower is better)
Translates to: RTSCGRAQKAGT*GCGCHSTWLWG
Trigger: TCCCCACAGCCATGTACTGTGACAACCGCAACCTCAAGTACCTGCCTTTTGTGCCCTCCCGCATGAAGTACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 72 bp GTGTTGGTAGCAAGGCCGTTGTTAGTGAGACTGTTGTaGGACAACCGGACGTACAGCAGCTTGGGTGACCCC +
Preference number: 6 (lower is better)
Translates to: VLVARPLLVRLL*DNRTYSSLGDP
Trigger: GGGGTCACCCAAGCTGCTGTACGTCCGGTTGTCTCACAACAGTCTCACTAACAACGGCCTTGCTACCAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 72 bp CTCATGGAACTCCCCACTTCCTGGATCTCATTGTGGTaGAGATATAAGGCCGTGAGGTTCTCCAGGCCCTCC +
Preference number: 6 (lower is better)
Translates to: LMELPTSWISLW*RYKAVRFSRPS
Trigger: GGAGGGCCTGGAGAACCTCACGGCCTTATATCTCCACCACAATGAGATCCAGGAAGTGGGGAGTTCCATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 72 bp CCTCTCATGGAACTCCCCACTTCCTGGATCTCATTGTaGTGGAGATATAAGGCCGTGAGGTTCTCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: PLMELPTSWISL*WRYKAVRFSRP
Trigger: GGGCCTGGAGAACCTCACGGCCTTATATCTCCACCACAATGAGATCCAGGAAGTGGGGAGTTCCATGAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 72 bp TCAGGTCTAGTAGGATCAGGGACCGGAGGCCTCTCATaGAACTCCCCACTTCCTGGATCTCATTGTGGTGGA +
Preference number: 6 (lower is better)
Translates to: SGLVGSGTGGLS*NSPLPGSHCGG
Trigger: TCCACCACAATGAGATCCAGGAAGTGGGGAGTTCCATGAGAGGCCTCCGGTCCCTGATCCTACTAGACCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 72 bp ACGTACTTCATGCGGGAGGGCACAAAAGGCAGGTACTaGAGGTTGCGGTTGTCACAGTACATGGCTGTGGGG +
Preference number: 6 (lower is better)
Translates to: TYFMREGTKGRY*RLRLSQYMAVG
Trigger: CCCCACAGCCATGTACTGTGACAACCGCAACCTCAAGTACCTGCCTTTTGTGCCCTCCCGCATGAAGTACGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 72 bp TTGCCATGTAGAGCGACCCAGAGGAGCCCAGTGGCATaGTCAAAGACACCTTCCTGGATGGCAGAGATCTGG +
Preference number: 6 (lower is better)
Translates to: LPCRATQRSPVA*SKTPSWMAEIW
Trigger: CCAGATCTCTGCCATCCAGGAAGGTGTCTTTGACAATGCCACTGGGCTCCTCTGGGTCGCTCTACATGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 72 bp TTGATCTCGTTCCCATCCAGGCGTAGCACCTGCAGCTaGGAGAAGTTCATGACGTCCACCACCGTGCAGAAG +
Preference number: 6 (lower is better)
Translates to: LISFPSRRSTCS*EKFMTSTTVQK
Trigger: CTTCTGCACGGTGGTGGACGTCATGAACTTCTCCAAGCTGCAGGTGCTACGCCTGGATGGGAACGAGATCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CCA 72 bp GCTCATAGGGGTAAGGGTCATAGGGGTCGTAGTAGGTaGACTGCTGGTTTCGGAGGTATTGGATCCACCAGT +
Preference number: 6 (lower is better)
Translates to: AHRGKGHRGRSR*TAGFGGIGSTS
Trigger: ACTGGTGGATCCAATACCTCCGAAACCAGCAGTCCACCTACTACGACCCCTATGACCCTTACCCCTATGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS CCA 72 bp GAGAAGACTTTCCTGCCTACCTTGTCACTGGTAATCTaGTTGCCATGTAGAGCGACCCAGAGGAGCCCAGTG +
Preference number: 6 (lower is better)
Translates to: EKTFLPTLSLVI*LPCRATQRSPV
Trigger: CACTGGGCTCCTCTGGGTCGCTCTACATGGCAACCAGATTACCAGTGACAAGGTAGGCAGGAAAGTCTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 72 bp GGGGTCGTAGTAGGTGGACTGCTGGTTTCGGAGGTATaGGATCCACCAGTGAGAGTCTTCATCATACTGGCC +
Preference number: 6 (lower is better)
Translates to: GVVVGGLLVSEV*DPPVRVFIILA
Trigger: GGCCAGTATGATGAAGACTCTCACTGGTGGATCCAATACCTCCGAAACCAGCAGTCCACCTACTACGACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS CAA 72 bp TTCATGCGGGAGGGCACAAAAGGCAGGTACTTGAGGTaGCGGTTGTCACAGTACATGGCTGTGGGGAAGTTG +
Preference number: 6 (lower is better)
Translates to: FMREGTKGRYLR*RLSQYMAVGKL
Trigger: CAACTTCCCCACAGCCATGTACTGTGACAACCGCAACCTCAAGTACCTGCCTTTTGTGCCCTCCCGCATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 72 bp AAGACTTTCCTGCCTACCTTGTCACTGGTAATCTGGTaGCCATGTAGAGCGACCCAGAGGAGCCCAGTGGCA +
Preference number: 6 (lower is better)
Translates to: KTFLPTLSLVIW*PCRATQRSPVA
Trigger: TGCCACTGGGCTCCTCTGGGTCGCTCTACATGGCAACCAGATTACCAGTGACAAGGTAGGCAGGAAAGTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 90 bp AGGGTCATAGGGGTCGTAGTAGGTGGACTGCTGGTTTCGGAGGTATaGGATCCACCAGTGAGAGTCTTCATCATACTGGCCCTGGGAAAG +
Preference number: 6 (lower is better)
Translates to: RVIGVVVGGLLVSEV*DPPVRVFIILALGK
Trigger: CTTTCCCAGGGCCAGTATGATGAAGACTCTCACTGGTGGATCCAATACCTCCGAAACCAGCAGTCCACCTACTACGACCCCTATGACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS CAA 90 bp GTAATCTGGTTGCCATGTAGAGCGACCCAGAGGAGCCCAGTGGCATaGTCAAAGACACCTTCCTGGATGGCAGAGATCTGGTTGTTCTGG +
Preference number: 6 (lower is better)
Translates to: VIWLPCRATQRSPVA*SKTPSWMAEIWLFW
Trigger: CCAGAACAACCAGATCTCTGCCATCCAGGAAGGTGTCTTTGACAATGCCACTGGGCTCCTCTGGGTCGCTCTACATGGCAACCAGATTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 72 bp GTGGACTGCTGGTTTCGGAGGTATTGGATCCACCAGTaGGAGTCTTCATCATACTGGCCCTGGGAAAGTGAG +
Preference number: 6 (lower is better)
Translates to: VDCWFRRYWIHQ*ESSSYWPWESE
Trigger: CTCACTTTCCCAGGGCCAGTATGATGAAGACTCTCACTGGTGGATCCAATACCTCCGAAACCAGCAGTCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048183.8
ENSMUST00000162779.2
CDS CAA 90 bp AGCTTGGAGAAGACTTTCCTGCCTACCTTGTCACTGGTAATCTGGTaGCCATGTAGAGCGACCCAGAGGAGCCCAGTGGCATTGTCAAAG +
Preference number: 6 (lower is better)
Translates to: SLEKTFLPTLSLVIW*PCRATQRSPVALSK
Trigger: CTTTGACAATGCCACTGGGCTCCTCTGGGTCGCTCTACATGGCAACCAGATTACCAGTGACAAGGTAGGCAGGAAAGTCTTCTCCAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 90 bp GTCAGGTTGTTGTGGTCCAAGTACAGCCTCTCCAAGTGCCTCAGCTaGGAGAAGACTTTCCTGCCTACCTTGTCACTGGTAATCTGGTTG +
Preference number: 6 (lower is better)
Translates to: VRLLWSKYSLSKCLS*EKTFLPTLSLVIWL
Trigger: CAACCAGATTACCAGTGACAAGGTAGGCAGGAAAGTCTTCTCCAAGCTGAGGCACTTGGAGAGGCTGTACTTGGACCACAACAACCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS CAA 72 bp TTGTGGTCCAAGTACAGCCTCTCCAAGTGCCTCAGCTaGGAGAAGACTTTCCTGCCTACCTTGTCACTGGTA +
Preference number: 6 (lower is better)
Translates to: LWSKYSLSKCLS*EKTFLPTLSLV
Trigger: TACCAGTGACAAGGTAGGCAGGAAAGTCTTCTCCAAGCTGAGGCACTTGGAGAGGCTGTACTTGGACCACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8
CDS TCA 72 bp TGTTGCCCTGGAGGTAAAGATTCTCCAGGTTGGTGTTaGCAGGAGGGATCTTCTGCAGCTGATTGTAAGACA +
Preference number: 6 (lower is better)
Translates to: CCPGGKDSPGWC*QEGSSAADCKT
Trigger: TGTCTTACAATCAGCTGCAGAAGATCCCTCCTGTCAACACCAACCTGGAGAATCTTTACCTCCAGGGCAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048183.8