Pregenerated sensors for FMO3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026691Ensembl transcript IDs: ENSMUST00000028010.9
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATACAAGTTGTCCATAAAAATACCATTCTCCTTACAAATTGTTGGTaGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACAT | + |
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Preference number: 1 (lower is better) Translates to: IQVVHKNTILLTNCW*NLKRKGLMPTADQH Trigger: ATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTAAGGAGAATGGTATTTTTATGGACAACTTGTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| 3UTR-3UTR TCA 90 bp | AAGAGAAAGGGACTTATGCCCACTGCAGATCAACATGATTCTGAAAGGGGCTTATCTGGCAAAAGATCTTaGACAGGAAAGGGAGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: KRKGLMPTADQHDSERGLSGKRS*TGKGEV Trigger: CACCTCTCCCTTTCCTGTTCAAGATCTTTTGCCAGA...TAAGCCCCTTTCAGAATCATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| 3UTR-3UTR CCA 90 bp | AATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACATAGCAAAGTTCTTGTCTaGTTGTTGTCAGTGACTCTC | + |
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Preference number: 2 (lower is better) Translates to: NCWWNLKRKGLMPTADQHSKVLV*LLSVTL Trigger: GAGAGTCACTGACAACAACCAGACAAGAACTTTGCT...ATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| 3UTR-3UTR CCA 90 bp | GAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCATAAACTTACAAATTGTTGGTaGAACTTAAAGAGAAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: EKRNHVQLFQEMIQVVHKLTNCW*NLKRKG Trigger: TCCCTTTCTCTTTAAGTTCCACCAACAATTTGTAAG...TTTATGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| 3UTR-3UTR CAA 90 bp | AATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACATGTTCTTGTCTGGTTGTaGTCAGTGACTCTCAGAAAT | + |
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Preference number: 3 (lower is better) Translates to: NCWWNLKRKGLMPTADQHVLVWL*SVTLRN Trigger: ATTTCTGAGAGTCACTGACAACAACCAGACAAGAAC...ATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| 3UTR-3UTR CAA 90 bp | CAACTGTTCCAAGAGATGATACAAGTTGTCCATAAAAATACCATTCTCCTTACATTCTGGCAAAAGATCTaGAACAGGAAAGGGAGAGGT | + |
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Preference number: 3 (lower is better) Translates to: QLFQEMIQVVHKNTILLTFWQKI*NRKGRG Trigger: ACCTCTCCCTTTCCTGTTCAAGATCTTTTGCCAGAA...TGTAAGGAGAATGGTATTTTTATGGACAACTTGTATCATCTCTTGGAACAGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| 3UTR TCA 72 bp | AAGAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATaGTACAAGTTGTCCATAAAAATACCATTCTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: KRKGIMSNCSKR*YKLSIKIPFSL Trigger: TAAGGAGAATGGTATTTTTATGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTCTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | AAGAGAAAGGGACTTATGCCCACTGCAGATCAACATGATTCTGAAAGGGGCTTAGGCGTTCCGGGCTCCTaGCCACTTTCCTGGGCCTAC | + |
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Preference number: 4 (lower is better) Translates to: KRKGLMPTADQHDSERGLGVPGS*PLSWAY Trigger: GTAGGCCCAGGAAAGTGGTCAGGAGCCCGGAACGCC...TAAGCCCCTTTCAGAATCATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | TCTAGAGTTCTGGCAAAAGATCTTGAACAGGAAAGGGAGAGGTGTGAAAAATCTGTGGCACCCAGGGACTaGACCAGGCCAATCACTGCC | + |
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Preference number: 4 (lower is better) Translates to: SRVLAKDLEQERERCEKSVAPRD*TRPITA Trigger: GGCAGTGATTGGCCTGGTCCAGTCCCTGGGTGCCAC...AGATTTTTCACACCTCTCCCTTTCCTGTTCAAGATCTTTTGCCAGAACTCTAGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR GCA 90 bp | AAGAGAAAGGGACTTATGCCCACTGCAGATCAACATGATTCTGAAAGGGGCTTAGGTAAATGCTGGCCCTaGCCTCTTCTATATGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: KRKGLMPTADQHDSERGLGKCWP*PLLYGL Trigger: CAGACCATATAGAAGAGGGCAGGGCCAGCATTTACC...TAAGCCCCTTTCAGAATCATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | AAAAGAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCACCTGCAGGTCAGTTATaGGGATGGTGGCACCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: KREKESCPTVPRDDTSCPPAGQL*GWWHPG Trigger: CCCTGGGTGCCACCATCCCCATAACTGACCTGCAGG...TGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR GCA 90 bp | AATACCATTCTCCTTACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGGCTGCCCAGCGTGCCTaGAGGTCAGTTATGGGGATG | + |
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Preference number: 4 (lower is better) Translates to: NTILLTNCWWNLKRKGLMAAQRA*RSVMGM Trigger: CATCCCCATAACTGACCTGCAGGCACGCTGGGCAGC...CATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTAAGGAGAATGGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | TACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACACAGGATGCGGGCTaGGAGCTCATCATTGAACAC | + |
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Preference number: 4 (lower is better) Translates to: YKLLVELKEKGTYAHCRSTQDAG*ELIIEH Trigger: GTGTTCAATGATGAGCTCCCAGCCCGCATCCTGTGT...TGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | GAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCATAAAGGTCAGTTATGGGGATaGTGGCACCCAGGGACTGGA | + |
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Preference number: 4 (lower is better) Translates to: EKRNHVQLFQEMIQVVHKGQLWG*WHPGTG Trigger: TCCAGTCCCTGGGTGCCACCATCCCCATAACTGACC...TTTATGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | TCTAGAGTTCTGGCAAAAGATCTTGAACAGGAAAGGGAGAGGTGTGAAAAATCTGCTTGCTGTGATGCATaGAGTTGGGAAAGTCATCGG | + |
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Preference number: 4 (lower is better) Translates to: SRVLAKDLEQERERCEKSACCDA*SWESHR Trigger: CCGATGACTTTCCCAACTTCATGCATCACAGCAAGC...AGATTTTTCACACCTCTCCCTTTCCTGTTCAAGATCTTTTGCCAGAACTCTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR GCA 90 bp | TACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCATCCTTTTATTACTTGTaGTGCCCAGCGTGCCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: YKLLVELKEKGTYAHCRSSFYYL*CPACLQ Trigger: CTGCAGGCACGCTGGGCAGCACAAGTAATAAAAGGA...TGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | AAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACAACACGGGCTCTTTCCTaGGTGTTCTGTTTAAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: KLLVELKEKGTYAHCRSTTRALS*VFCLKA Trigger: TGCCTTTAAACAGAACACTCAGGAAAGAGCCCGTGT...TGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | ACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAAGTTGGTTTCTCTAGTTaGGGAGGGAAGACACCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TNCWWNLKRKGLMPTADQVGFSS*GGKTPL Trigger: CAAAGGTGTCTTCCCTCCTCAACTAGAGAAACCAAC...TTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | AAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACAACCACCAGTCAGAGATaGCGGTGGGTAAGTTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: KLLVELKEKGTYAHCRSTTTSQR*RWVSCF Trigger: AAAACAACTTACCCACCGCCATCTCTGACTGGTGGT...TGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | AAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACAGGCCAATCACTGCCATaGTTGGTTTCTCTAGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: KLLVELKEKGTYAHCRSTGQSLP*LVSLVE Trigger: CTCAACTAGAGAAACCAACCATGGCAGTGATTGGCC...TGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | GAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCATAAACTCTTCTATATGGTCTaGGAATTTCCACAGGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: EKRNHVQLFQEMIQVVHKLFYMV*EFPQAP Trigger: GGGGGCCTGTGGAAATTCTCAGACCATATAGAAGAG...TTTATGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | AATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACATCCTTGGCAAATGAAGTaGTGTATTCTTGGAGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: NCWWNLKRKGLMPTADQHPWQMK*CILGAC Trigger: GCAAGCTCCAAGAATACATCACTTCATTTGCCAAGG...ATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | TACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCACATAGTTTTCGTGCTTaGATCTGGCATTCATCTGCC | + |
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Preference number: 4 (lower is better) Translates to: YKLLVELKEKGTYAHCRSHSFRA*IWHSSA Trigger: GGCAGATGAATGCCAGATTCAAGCACGAAAACTATG...TGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | GAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCATAAACAAGGAACAAAGCAATaGGCAGAACGGGAACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: EKRNHVQLFQEMIQVVHKQGTKQ*AEREQP Trigger: TGGCTGTTCCCGTTCTGCTCATTGCTTTGTTCCTTG...TTTATGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR GCA 90 bp | AAAAGAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCAAGACCGATTGGTAAATaGTGGCCCTGCCCTCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: KREKESCPTVPRDDTSCPRPIGK*WPCPLL Trigger: TAGAAGAGGGCAGGGCCAGCATTTACCAATCGGTCT...TGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR GCA 90 bp | TCTAGAGTTCTGGCAAAAGATCTTGAACAGGAAAGGGAGAGGTGTGAAAAATCTGTTCCTTATAGTCCCTaGTGTGGAAGCATTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SRVLAKDLEQERERCEKSVPYSP*CGSICL Trigger: AAGGCAAATGCTTCCACAGCAGGGACTATAAGGAAC...AGATTTTTCACACCTCTCCCTTTCCTGTTCAAGATCTTTTGCCAGAACTCTAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR GCA 90 bp | AAAAGAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCATTTTATTACTTGTGCTaGCCAGCGTGCCTGCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: KREKESCPTVPRDDTSCPFYYLC*PACLQV Trigger: GACCTGCAGGCACGCTGGGCAGCACAAGTAATAAAA...TGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | TACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCACTGCCCTCTTCTATATaGTCTGAGAATTTCCACAGG | + |
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Preference number: 4 (lower is better) Translates to: YKLLVELKEKGTYAHCRSLPSSI*SENFHR Trigger: CCTGTGGAAATTCTCAGACCATATAGAAGAGGGCAG...TGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | AATACCATTCTCCTTACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGTCTGAGCTACATGGCTaGGTTCTGCAGCAATGTCAC | + |
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Preference number: 4 (lower is better) Translates to: NTILLTNCWWNLKRKGLMSELHG*VLQQCH Trigger: GTGACATTGCTGCAGAACTCAGCCATGTAGCTCAGA...CATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTAAGGAGAATGGTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | AATACCATTCTCCTTACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCAACCTGGGATCCTTaGGAAACAGCCATAGGAGAT | + |
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Preference number: 4 (lower is better) Translates to: NTILLTNCWWNLKRKGLMPTWDP*ETAIGD Trigger: ATCTCCTATGGCTGTTTCTCAAGGATCCCAGGTTGG...CATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGTAAGGAGAATGGTATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | CAACTGTTCCAAGAGATGATACAAGTTGTCCATAAAAATACCATTCTCCTTACATTTTTGAGGAAAGTTTaGAACCGTGTGAGCACCACC | + |
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Preference number: 4 (lower is better) Translates to: QLFQEMIQVVHKNTILLTFLRKV*NRVSTT Trigger: GGTGGTGCTCACACGGTTTCAAACTTTCCTCAAAAA...TGTAAGGAGAATGGTATTTTTATGGACAACTTGTATCATCTCTTGGAACAGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | ACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACACCTTTGTACAAAGTaGCCTCATTATTTCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: TNCWWNLKRKGLMPTADQHLCTK*PHYFCF Trigger: AAAGCAGAAATAATGAGGTCACTTTGTACAAAGGTG...TTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | AAAAGAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCACTTTTCCTTGGCAAATaGAGTGATGTATTCTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: KREKESCPTVPRDDTSCPLFLGK*SDVFLE Trigger: CTCCAAGAATACATCACTTCATTTGCCAAGGAAAAG...TGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CCA 90 bp | GAGAAAAGGAATCATGTCCAACTGTTCCAAGAGATGATACAAGTTGTCCATAAATGGAAAGGAGTCTTTTaGTACATGGGGAAATATGTG | + |
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Preference number: 4 (lower is better) Translates to: EKRNHVQLFQEMIQVVHKWKGVF*YMGKYV Trigger: CACATATTTCCCCATGTACCAAAAGACTCCTTTCCA...TTTATGGACAACTTGTATCATCTCTTGGAACAGTTGGACATGATTCCTTTTCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR TCA 90 bp | CAACTGTTCCAAGAGATGATACAAGTTGTCCATAAAAATACCATTCTCCTTACAACATGGGGAAATATGTaGTGCCCAGAACAAATCATT | + |
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Preference number: 4 (lower is better) Translates to: QLFQEMIQVVHKNTILLTTWGNM*CPEQII Trigger: AATGATTTGTTCTGGGCATCACATATTTCCCCATGT...TGTAAGGAGAATGGTATTTTTATGGACAACTTGTATCATCTCTTGGAACAGTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS CCA 90 bp | TTACTTGTGCTGCCCAGCGTGCCTGCAGGTCAGTTATGGGGATGGTaGCACCCAGGGACTGGACCAGGCCAATCACTGCCATGGTTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LLVLPSVPAGQLWGW*HPGTGPGQSLPWLV Trigger: AACCAACCATGGCAGTGATTGGCCTGGTCCAGTCCCTGGGTGCCACCATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCACAAGTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS CCA 90 bp | TTATTACTTGTGCTGCCCAGCGTGCCTGCAGGTCAGTTATGGGGATaGTGGCACCCAGGGACTGGACCAGGCCAATCACTGCCATGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LLLVLPSVPAGQLWG*WHPGTGPGQSLPWL Trigger: CAACCATGGCAGTGATTGGCCTGGTCCAGTCCCTGGGTGCCACCATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCACAAGTAATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS GCA 90 bp | GGCAAAGTGCAAGTTCCTTTTATTACTTGTGCTGCCCAGCGTGCCTaGAGGTCAGTTATGGGGATGGTGGCACCCAGGGACTGGACCAGG | + |
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Preference number: 5 (lower is better) Translates to: GKVQVPFITCAAQRA*RSVMGMVAPRDWTR Trigger: CCTGGTCCAGTCCCTGGGTGCCACCATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCACAAGTAATAAAAGGAACTTGCACTTTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS GCA 90 bp | AGAAGGCAAAGTGCAAGTTCCTTTTATTACTTGTGCTGCCCAGCGTaGCTGCAGGTCAGTTATGGGGATGGTGGCACCCAGGGACTGGAC | + |
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Preference number: 5 (lower is better) Translates to: RRQSASSFYYLCCPA*LQVSYGDGGTQGLD Trigger: GTCCAGTCCCTGGGTGCCACCATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCACAAGTAATAAAAGGAACTTGCACTTTGCCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS GCA 90 bp | GTCGTTTACAGAAGGCAAAGTGCAAGTTCCTTTTATTACTTGTGCTaGCCAGCGTGCCTGCAGGTCAGTTATGGGGATGGTGGCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: VVYRRQSASSFYYLC*PACLQVSYGDGGTQ Trigger: CTGGGTGCCACCATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCACAAGTAATAAAAGGAACTTGCACTTTGCCTTCTGTAAACGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | ACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAAGTTGGTGAAGACCGATaGGTAAATGCTGGCCCTGCC | + |
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Preference number: 5 (lower is better) Translates to: TNCWWNLKRKGLMPTADQVGEDR*VNAGPA Trigger: GGCAGGGCCAGCATTTACCAATCGGTCTTCACCAAC...TTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | AAGAGAAAGGGACTTATGCCCACTGCAGATCAACATGATTCTGAAAGGGGCTTATGGCATTCATCTGCCTaGTGTACCACCAGTCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: KRKGLMPTADQHDSERGLWHSSA*CTTSQR Trigger: TCTCTGACTGGTGGTACACAAGGCAGATGAATGCCA...TAAGCCCCTTTCAGAATCATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | AAGAGAAAGGGACTTATGCCCACTGCAGATCAACATGATTCTGAAAGGGGCTTAAACAGCCATAGGAGATaGGGCTTTGCACCAATGAAG | + |
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Preference number: 5 (lower is better) Translates to: KRKGLMPTADQHDSERGLNSHRR*GFAPMK Trigger: CTTCATTGGTGCAAAGCCCAATCTCCTATGGCTGTT...TAAGCCCCTTTCAGAATCATGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | AAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACACTGCTGTGGAAGCATTaGCCTTTAAAACGGTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: KLLVELKEKGTYAHCRSTLLWKH*PLKRFS Trigger: ACTGAACCGTTTTAAAGGCAAATGCTTCCACAGCAG...TGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | ACAAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAAGTTTTTGAGGAAAGTTaGAAACCGTGTGAGCACCAC | + |
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Preference number: 5 (lower is better) Translates to: TNCWWNLKRKGLMPTADQVFEES*KPCEHH Trigger: GTGGTGCTCACACGGTTTCAAACTTTCCTCAAAAAC...TTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | CAACTGTTCCAAGAGATGATACAAGTTGTCCATAAAAATACCATTCTCCTTACAGCCAACCTGGGATCCTaGAGAAACAGCCATAGGAGA | + |
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Preference number: 5 (lower is better) Translates to: QLFQEMIQVVHKNTILLTANLGS*RNSHRR Trigger: TCTCCTATGGCTGTTTCTCAAGGATCCCAGGTTGGC...TGTAAGGAGAATGGTATTTTTATGGACAACTTGTATCATCTCTTGGAACAGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | AAATTGTTGGTGGAACTTAAAGAGAAAGGGACTTATGCCCACTGCAGATCAACAGTGGTGACTTCCCATTaGCCAGTAGTTGAGAAATTA | + |
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Preference number: 5 (lower is better) Translates to: KLLVELKEKGTYAHCRSTVVTSH*PVVEKL Trigger: TAATTTCTCAACTACTGGCAAATGGGAAGTCACCAC...TGTTGATCTGCAGTGGGCATAAGTCCCTTTCTCTTTAAGTTCCACCAACAATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS-3UTR CAA 90 bp | TCTAGAGTTCTGGCAAAAGATCTTGAACAGGAAAGGGAGAGGTGTGAAAAATCTCTGGAAAGGAGTCTTTaGGTACATGGGGAAATATGT | + |
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Preference number: 5 (lower is better) Translates to: SRVLAKDLEQERERCEKSLERSL*VHGEIC Trigger: ACATATTTCCCCATGTACCAAAAGACTCCTTTCCAG...AGATTTTTCACACCTCTCCCTTTCCTGTTCAAGATCTTTTGCCAGAACTCTAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS CCA 72 bp | GTGCTGCCCAGCGTGCCTGCAGGTCAGTTATGGGGATaGTGGCACCCAGGGACTGGACCAGGCCAATCACTG | + |
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Preference number: 6 (lower is better) Translates to: VLPSVPAGQLWG*WHPGTGPGQSL Trigger: CAGTGATTGGCCTGGTCCAGTCCCTGGGTGCCACCATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS CCA 72 bp | TGCAGGTCAGTTATGGGGATGGTGGCACCCAGGGACTaGACCAGGCCAATCACTGCCATGGTTGGTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: CRSVMGMVAPRD*TRPITAMVGFS Trigger: AGAGAAACCAACCATGGCAGTGATTGGCCTGGTCCAGTCCCTGGGTGCCACCATCCCCATAACTGACCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS GCA 72 bp | AGTGCAAGTTCCTTTTATTACTTGTGCTGCCCAGCGTaGCTGCAGGTCAGTTATGGGGATGGTGGCACCCAG | + |
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Preference number: 6 (lower is better) Translates to: SASSFYYLCCPA*LQVSYGDGGTQ Trigger: CTGGGTGCCACCATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCACAAGTAATAAAAGGAACTTGCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS GCA 72 bp | TACAGAAGGCAAAGTGCAAGTTCCTTTTATTACTTGTaGTGCCCAGCGTGCCTGCAGGTCAGTTATGGGGAT | + |
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Preference number: 6 (lower is better) Translates to: YRRQSASSFYYL*CPACLQVSYGD Trigger: ATCCCCATAACTGACCTGCAGGCACGCTGGGCAGCACAAGTAATAAAAGGAACTTGCACTTTGCCTTCTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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| CDS TCA 72 bp | TTCTGTTTAAAGGCACCAAACCATAGTTTTCGTGCTTaGATCTGGCATTCATCTGCCTTGTGTACCACCAGT | + |
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Preference number: 6 (lower is better) Translates to: FCLKAPNHSFRA*IWHSSALCTTS Trigger: ACTGGTGGTACACAAGGCAGATGAATGCCAGATTCAAGCACGAAAACTATGGTTTGGTGCCTTTAAACAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028010.9 |
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