Pregenerated sensors for FMO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040181Ensembl transcript IDs: ENSMUST00000046049.14, ENSMUST00000111518.3, ENSMUST00000131058.8, ENSMUST00000134098.8, ENSMUST00000193078.6
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCCAATCAGGGAGTaGTGCGTCCTAGGCAATTGTTGTTCTCTTTTAAATAGAAGGGGT | + |
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Preference number: 1 (lower is better) Translates to: SRERQLGHGLQPIRE*CVLGNCCSLLNRRG Trigger: ACCCCTTCTATTTAAAAGAGAACAACAATTGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTTCACGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR CCA 90 bp | GCAATAAAGCTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTTCCTaGCCGGTCGTGAGAACGCGACGAATAACAATTGGTGCCGAATTC | + |
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Preference number: 1 (lower is better) Translates to: AIKLCRRRFWLLCSS*PVVRTRRITIGAEF Trigger: GAATTCGGCACCAATTGTTATTCGTCGCGTTCTCACGACCGGCCAGGAAGAACACAACAACCAGAATCTTCTACGGCAAAGCTTTATTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR-3UTR TCA 90 bp | GGTCACATCTCCTGGGCTCACTGGATAGGCAGTTGTTGCCAAATCCCATTGAGACAGCCAATCAGGGAGTaGTGCGTCCTAGGCAATTGT | + |
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Preference number: 2 (lower is better) Translates to: GHISWAHWIGSCCQIPLRQPIRE*CVLGNC Trigger: ACAATTGCCTAGGACGCATCACTCCCTGATTGGCTG...TCTCAATGGGATTTGGCAACAACTGCCTATCCAGTGAGCCCAGGAGATGTGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR-3UTR TCA 90 bp | GAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAAAGCTGCCAGTGAGGTaGACCGGAAAGGGGAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: EQKCWTLSSGIKPNGAARKLPVR*TGKGRG Trigger: CCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTT...TCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| 3UTR CAA 90 bp | GCAACACCAGGGTCACATCTCCTGGGCTCACTGGATAGGCAGTTGTaGCCAAATCCCATTGAGACATCAAGTGCAAACAGAAAGATTTTG | + |
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Preference number: 2 (lower is better) Translates to: ATPGSHLLGSLDRQL*PNPIETSSANRKIL Trigger: CAAAATCTTTCTGTTTGCACTTGATGTCTCAATGGGATTTGGCAACAACTGCCTATCCAGTGAGCCCAGGAGATGTGACCCTGGTGTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR-3UTR CCA 90 bp | TTAGGGCGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGAGTGAACAAAAGTGCTaGACCTTATCTTCTGGCATT | + |
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Preference number: 2 (lower is better) Translates to: LGRKNAQSILWGQLLPEKSEQKC*TLSSGI Trigger: AATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACT...CTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCGCCCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGTTGTTGCCAAATCCCATTGAGACATCAAGTGCAAACAGAAAGATTTTGTTGCTTCTTACACTCTaGCCCCAAAAAGATGTAAGC | + |
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Preference number: 2 (lower is better) Translates to: RQLLPNPIETSSANRKILLLLTL*PQKDVS Trigger: GCTTACATCTTTTTGGGGCCAGAGTGTAAGAAGCAA...CAAAATCTTTCTGTTTGCACTTGATGTCTCAATGGGATTTGGCAACAACTGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR-3UTR GCA 90 bp | TTGCCAAATCCCATTGAGACATCAAGTGCAAACAGAAAGATTTTGAAAAATCCTTTTTTCTCTCTCTCTTaGTTCTTACACTCTGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: LPNPIETSSANRKILKNPFFSLS*FLHSGP Trigger: GGGGCCAGAGTGTAAGAAGCAAGAGAGAGAGAAAAA...AGGATTTTTCAAAATCTTTCTGTTTGCACTTGATGTCTCAATGGGATTTGGCAA 39% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR TCA 72 bp | GGAGCTGCAAGAGACCCAGCAATACCAAGCTGCCAGTaGGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: GAARDPAIPSCQ*GEPERGGGRVS Trigger: TGAAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTGCTGGGTCTCTTGCAGCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| 3UTR CCA 72 bp | AAAGGGTTGTGTGTGCAACACCAGGGTCACATCTCCTaGGCTCACTGGATAGGCAGTTGTTGCCAAATCCCA | + |
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Preference number: 3 (lower is better) Translates to: KGLCVQHQGHIS*AHWIGSCCQIP Trigger: TGGGATTTGGCAACAACTGCCTATCCAGTGAGCCCAGGAGATGTGACCCTGGTGTTGCACACACAACCCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR-3UTR CAA 90 bp | GGTCACATCTCCTGGGCTCACTGGATAGGCAGTTGTTGCCAAATCCCATTGAGAAGAAGATTCTGGTTGTaGTGTTCTTCCTGGCCGGTC | + |
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Preference number: 3 (lower is better) Translates to: GHISWAHWIGSCCQIPLRRRFWL*CSSWPV Trigger: GACCGGCCAGGAAGAACACAACAACCAGAATCTTCT...TCTCAATGGGATTTGGCAACAACTGCCTATCCAGTGAGCCCAGGAGATGTGACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR TCA 72 bp | CGTCAGCTCGGCCATGGGCTGCAGCCAATCAGGGAGTaGTGCGTCCTAGGCAATTGTTGTTCTCTTTTAAAT | + |
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Preference number: 3 (lower is better) Translates to: RQLGHGLQPIRE*CVLGNCCSLLN Trigger: ATTTAAAAGAGAACAACAATTGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR CCA 72 bp | TGTGTGCAACACCAGGGTCACATCTCCTGGGCTCACTaGATAGGCAGTTGTTGCCAAATCCCATTGAGACAT | + |
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Preference number: 3 (lower is better) Translates to: CVQHQGHISWAH*IGSCCQIPLRH Trigger: ATGTCTCAATGGGATTTGGCAACAACTGCCTATCCAGTGAGCCCAGGAGATGTGACCCTGGTGTTGCACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR TCA 72 bp | TGGGGACCCTCGCAACGTGCCAGGCATTGTGGTAGATaGTATAGAGAAATGATATCAATAAGCCGTGACCCT | + |
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Preference number: 3 (lower is better) Translates to: WGPSQRARHCGR*YREMISISRDP Trigger: AGGGTCACGGCTTATTGATATCATTTCTCTATATCATCTACCACAATGCCTGGCACGTTGCGAGGGTCCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR CCA 72 bp | CTTTGCCGTAGAAGATTCTGGTTGTTGTGTTCTTCCTaGCCGGTCGTGAGAACGCGACGAATAACAATTGGT | + |
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Preference number: 3 (lower is better) Translates to: LCRRRFWLLCSS*PVVRTRRITIG Trigger: ACCAATTGTTATTCGTCGCGTTCTCACGACCGGCCAGGAAGAACACAACAACCAGAATCTTCTACGGCAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| 3UTR TCA 72 bp | TGTTTACAAAGATTCTTATACAATGAAGGTGTTTGCTaGCAGTCCACAGCTCAGGCTGAGTTCGCTGAGTCA | + |
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Preference number: 3 (lower is better) Translates to: CLQRFLYNEGVC*QSTAQAEFAES Trigger: TGACTCAGCGAACTCAGCCTGAGCTGTGGACTGTCAGCAAACACCTTCATTGTATAAGAATCTTTGTAAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR GCA 90 bp | CAGCAATACCAAGCTGCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTTCGGCTGATCACCCATaGCCCTCCAGTAGTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: QQYQAASEVNRKGEGVGFSADHP*PSSSAE Trigger: CTCAGCACTACTGGAGGGGCATGGGTGATCAGCCGA...AAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR GCA 90 bp | CAGCAATACCAAGCTGCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTATGGGCCAAAGAAGATaGTCAGAGCCAGTCGTGGGT | + |
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Preference number: 4 (lower is better) Translates to: QQYQAASEVNRKGEGVGFMGQRR*SEPVVG Trigger: ACCCACGACTGGCTCTGAGCATCTTCTTTGGCCCAT...AAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTGCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | CGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGGGCCTGGCTCAGAGCCAGTCGTaGGTCAGTCAGGAGCATGGC | + |
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Preference number: 4 (lower is better) Translates to: RKNAQSILWGQLLPEKGLAQSQS*VSQEHG Trigger: GCCATGCTCCTGACTGACCCACGACTGGCTCTGAGC...CAGGCCCTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | GCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTCATTCTTTGGATATGACAGGCTCTCTCAGCTaGGTCCTGTCTTCTGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: ASEVNRKGEGVGFHSLDMTGSLS*VLSSGA Trigger: AGCTCCAGAAGACAGGACTCAGCTGAGAGAGCCTGT...CATATCCAAAGAATGAAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | CAGCAATACCAAGCTGCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTTCCTTCCCATTTTCCTaGACCAGTCAGGCGGAAATG | + |
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Preference number: 4 (lower is better) Translates to: QQYQAASEVNRKGEGVGFSFPFS*TSQAEM Trigger: CATTTCCGCCTGACTGGTCCAGGAAAATGGGAAGGA...AAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | ACCCAGCAATACCAAGCTGCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTCTGAAATCGTGTCATaGATATCATGTCCCATGGGT | + |
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Preference number: 4 (lower is better) Translates to: TQQYQAASEVNRKGEGVGSEIVS*ISCPMG Trigger: ACCCATGGGACATGATATTCATGACACGATTTCAGA...CCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTGCTGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | CAATACCAAGCTGCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTCATAATCACAGCCAGAGTTaGTTTTGGCAGATGCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: QYQAASEVNRKGEGVGFHNHSQS*FWQMRR Trigger: CCTGCGCATCTGCCAAAACCAACTCTGGCTGTGATT...ATGAAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | CAATACCAAGCTGCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTCATAGCATCAAAGATGGCTaGGTTTTGCTTCCCGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: QYQAASEVNRKGEGVGFHSIKDG*VLLPVC Trigger: ACAAACGGGAAGCAAAACTCAGCCATCTTTGATGCT...ATGAAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | TGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAGACCCAGCAGTCCCATGGGTACCCTaGATCAAAGACTCGGCTGAT | + |
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Preference number: 4 (lower is better) Translates to: CWTLSSGIKPNGAARDPAVPWVP*IKDSAD Trigger: ATCAGCCGAGTCTTTGATTCAGGGTACCCATGGGAC...TGCTGGGTCTCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | GGTCACATCTCCTGGGCTCACTGGATAGGCAGTTGTTGCCAAATCCCATTGAGAAGCATCAAAGATGGCTaGGTTTTGCTTCCCGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: GHISWAHWIGSCCQIPLRSIKDG*VLLPVC Trigger: ACAAACGGGAAGCAAAACTCAGCCATCTTTGATGCT...TCTCAATGGGATTTGGCAACAACTGCCTATCCAGTGAGCCCAGGAGATGTGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR TCA 90 bp | CAGCAATACCAAGCTGCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTTTTCTGAGCATGTTCTaGAATCGTGTCATGAATATC | + |
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Preference number: 4 (lower is better) Translates to: QQYQAASEVNRKGEGVGFFLSMF*NRVMNI Trigger: GATATTCATGACACGATTTCAGAACATGCTCAGAAA...AAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGCAGCTTGGTATTGCTG 49% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | GCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTCATTCTTTGGATATGTGGAAAAGGAAAATCTaGGTAACACGACATCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: ASEVNRKGEGVGFHSLDMWKRKI*VTRHLP Trigger: AGGGAGATGTCGTGTTACCCAGATTTTCCTTTTCCA...CATATCCAAAGAATGAAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | GGCCTGGATCCTTCCAACATTTTAAGTGAACAAAAGTGCTGGACCTTATCTTCTAATCAAAGACTCGGCTaGTCACCCATGCCCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GLDPSNILSEQKCWTLSSNQRLG*SPMPLQ Trigger: CTGGAGGGGCATGGGTGATCAGCCGAGTCTTTGATT...AGAAGATAAGGTCCAGCACTTTTGTTCACTTAAAATGTTGGAAGGATCCAGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR GCA 90 bp | TTAGGGCGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGGTTGGTTTTGGCAGATaGGCAGGGAAGATGTACTTG | + |
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Preference number: 4 (lower is better) Translates to: LGRKNAQSILWGQLLPEKVGFGR*AGKMYL Trigger: CAAGTACATCTTCCCTGCGCATCTGCCAAAACCAAC...CTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCGCCCTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR GCA 90 bp | TTAGGGCGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGCTGTTTGCAAAGCCTTaGAGTAGCACAAGCCAAACC | + |
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Preference number: 4 (lower is better) Translates to: LGRKNAQSILWGQLLPEKLFAKP*SSTSQT Trigger: GGTTTGGCTTGTGCTACTGCAAGGCTTTGCAAACAG...CTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCGCCCTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | GGTCACATCTCCTGGGCTCACTGGATAGGCAGTTGTTGCCAAATCCCATTGAGATGGAAAAGGAAAATCTaGGTAACACGACATCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: GHISWAHWIGSCCQIPLRWKRKI*VTRHLP Trigger: AGGGAGATGTCGTGTTACCCAGATTTTCCTTTTCCA...TCTCAATGGGATTTGGCAACAACTGCCTATCCAGTGAGCCCAGGAGATGTGACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR CCA 90 bp | TGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAGACCCAGCATTTTTGCTAAGTGGCTaGCCTCCACGGCAATATCTG | + |
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Preference number: 4 (lower is better) Translates to: CWTLSSGIKPNGAARDPAFLLSG*PPRQYL Trigger: CAGATATTGCCGTGGAGGCCAGCCACTTAGCAAAAA...TGCTGGGTCTCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | TGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAGACCCAGCACCTTTGGTGTGTTGTTaGACACGACAGAGTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: CWTLSSGIKPNGAARDPAPLVCC*TRQSFP Trigger: AGGAAAACTCTGTCGTGTTCAACAACACACCAAAGG...TGCTGGGTCTCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | CGTAGAAGATTCTGGTTGTTGTGTTCTTCCTGGCCGGTCGTGAGAACGCGACGAATTTGGCACAAAGTTTaGATAGTCTTCTGGAAAAGG | + |
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Preference number: 4 (lower is better) Translates to: RRRFWLLCSSWPVVRTRRIWHKV*IVFWKR Trigger: CCTTTTCCAGAAGACTATCCAAACTTTGTGCCAAAT...TCGTCGCGTTCTCACGACCGGCCAGGAAGAACACAACAACCAGAATCTTCTACG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR CCA 90 bp | CGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGGGCCTGCAACCAACTCACAATTaGAGTTGGGAGAAGATTTCT | + |
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Preference number: 4 (lower is better) Translates to: RKNAQSILWGQLLPEKGLQPTHN*SWEKIS Trigger: AGAAATCTTCTCCCAACTCCAATTGTGAGTTGGTTG...CAGGCCCTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | GAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAACTGTTCGGTCCCACTaGGTCAAGATGGCCTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: EQKCWTLSSGIKPNGAARTVRSH*VKMAFL Trigger: CAGAAAGGCCATCTTGACCCAGTGGGACCGAACAGT...TCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | AGAGGAGTTGGAACGTTATACTCCATACATTTGAAAAGCCAGTTAGATCTTTCACTTGTGTCTCTCCTGTaGGTACCATGGAGCCCAGGG | + |
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Preference number: 4 (lower is better) Translates to: RGVGTLYSIHLKSQLDLSLVSLL*VPWSPG Trigger: CCCTGGGCTCCATGGTACCCACAGGAGAGACACAAG...TGAAAGATCTAACTGGCTTTTCAAATGTATGGAGTATAACGTTCCAACTCCTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | TTAGGGCGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGACTCACAATTGGAGTTaGGAGAAGATTTCTGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LGRKNAQSILWGQLLPEKTHNWS*EKISEH Trigger: ATGCTCAGAAATCTTCTCCCAACTCCAATTGTGAGT...CTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCGCCCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | TGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAGACCCAGCAAGTTTCAAAGGAAGATaGGGATTCTTGTATGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: CWTLSSGIKPNGAARDPASFKGR*GFLYGS Trigger: CGAACCATACAAGAATCCCCATCTTCCTTTGAAACT...TGCTGGGTCTCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | TGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAGACCCAGCAATTTGGCACAAAGTTTaGATAGTCTTCTGGAAAAGG | + |
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Preference number: 4 (lower is better) Translates to: CWTLSSGIKPNGAARDPAIWHKV*IVFWKR Trigger: CCTTTTCCAGAAGACTATCCAAACTTTGTGCCAAAT...TGCTGGGTCTCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | TGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTGCAAGAGACCCAGCAGTCCTTAAATATGTCTaGATGTTTATACTGTCGGCT | + |
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Preference number: 4 (lower is better) Translates to: CWTLSSGIKPNGAARDPAVLKYV*MFILSA Trigger: AGCCGACAGTATAAACATCCAGACATATTTAAGGAC...TGCTGGGTCTCTTGCAGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | TTAAGTGAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTAGCCAGAGTTGGTTTTaGCAGATGCGCAGGGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: LSEQKCWTLSSGIKPNGASQSWF*QMRRED Trigger: ATCTTCCCTGCGCATCTGCCAAAACCAACTCTGGCT...AGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | TTGCCAAATCCCATTGAGACATCAAGTGCAAACAGAAAGATTTTGAAAAATCCTTCCCGTAAAGCAGACTaGGAAGGAATCCAGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LPNPIETSSANRKILKNPSRKAD*EGIQGQ Trigger: CTGCCCCTGGATTCCTTCCCAGTCTGCTTTACGGGA...AGGATTTTTCAAAATCTTTCTGTTTGCACTTGATGTCTCAATGGGATTTGGCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR GCA 90 bp | AGGCAGTTGTTGCCAAATCCCATTGAGACATCAAGTGCAAACAGAAAGATTTTGAAGATGGCTGAGTTTTaGTTCCCGTTTGTGACAGTG | + |
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Preference number: 4 (lower is better) Translates to: RQLLPNPIETSSANRKILKMAEF*FPFVTV Trigger: CACTGTCACAAACGGGAAGCAAAACTCAGCCATCTT...CAAAATCTTTCTGTTTGCACTTGATGTCTCAATGGGATTTGGCAACAACTGCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR CCA 90 bp | TTAAGTGAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTAATGGGCTCCTCCTTTaGTGTGTTGTTGAACACGAC | + |
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Preference number: 4 (lower is better) Translates to: LSEQKCWTLSSGIKPNGANGLLL*CVVEHD Trigger: GTCGTGTTCAACAACACACCAAAGGAGGAGCCCATT...AGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| 3UTR CAA 72 bp | GTGAACCGGAAAGGGGAGGGGGTAGGGTTTCATTCTTaGGATATGGTTTATGATTATGAAGACAAAGTTGTT | + |
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Preference number: 4 (lower is better) Translates to: VNRKGEGVGFHS*DMVYDYEDKVV Trigger: AACAACTTTGTCTTCATAATCATAAACCATATCCAAAGAATGAAACCCTACCCCCTCCCCTTTCCGGTTCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | GGCCTGGATCCTTCCAACATTTTAAGTGAACAAAAGTGCTGGACCTTATCTTCTAAGGTTGAACTGGGTTaGGTAGAGTTTGAGATATTC | + |
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Preference number: 4 (lower is better) Translates to: GLDPSNILSEQKCWTLSSKVELG*VEFEIF Trigger: GAATATCTCAAACTCTACTCAACCCAGTTCAACCTT...AGAAGATAAGGTCCAGCACTTTTGTTCACTTAAAATGTTGGAAGGATCCAGGCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | ATTTTAAGTGAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGATGTACTTGTACAGTaGTGCCTGGCCATCCTCAAC | + |
|
Preference number: 4 (lower is better) Translates to: ILSEQKCWTLSSGIKPNGDVLVQ*CLAILN Trigger: GTTGAGGATGGCCAGGCATCACTGTACAAGTACATC...TCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACTTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR TCA 90 bp | AGGCAGTTGTTGCCAAATCCCATTGAGACATCAAGTGCAAACAGAAAGATTTTGAAGGTTGAACTGGGTTaGGTAGAGTTTGAGATATTC | + |
|
Preference number: 4 (lower is better) Translates to: RQLLPNPIETSSANRKILKVELG*VEFEIF Trigger: GAATATCTCAAACTCTACTCAACCCAGTTCAACCTT...CAAAATCTTTCTGTTTGCACTTGATGTCTCAATGGGATTTGGCAACAACTGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR TCA 90 bp | TTAAGTGAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAGCTTTGGGAGAAGATTTCTaGGCATGTTCTGAAATCGTG | + |
|
Preference number: 4 (lower is better) Translates to: LSEQKCWTLSSGIKPNGALGEDF*ACSEIV Trigger: CACGATTTCAGAACATGCTCAGAAATCTTCTCCCAA...AGCTCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CCA 90 bp | AGAGGAGTTGGAACGTTATACTCCATACATTTGAAAAGCCAGTTAGATCTTTCATTGTACAGTGATGCCTaGCCATCCTCAACTTTCACT | + |
|
Preference number: 4 (lower is better) Translates to: RGVGTLYSIHLKSQLDLSLYSDA*PSSTFT Trigger: AGTGAAAGTTGAGGATGGCCAGGCATCACTGTACAA...TGAAAGATCTAACTGGCTTTTCAAATGTATGGAGTATAACGTTCCAACTCCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR GCA 90 bp | ATTTTAAGTGAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAAAGATGGCTGAGTTTTaGTTCCCGTTTGTGACAGTG | + |
|
Preference number: 4 (lower is better) Translates to: ILSEQKCWTLSSGIKPNGKMAEF*FPFVTV Trigger: CACTGTCACAAACGGGAAGCAAAACTCAGCCATCTT...TCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACTTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS GCA 90 bp | GACCAGTCAGGCGGAAATGGTAAGGGGTACATGGGCCAAAGAAGATaGTCAGAGCCAGTCGTGGGTCAGTCAGGAGCATGGCCCGCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: DQSGGNGKGYMGQRR*SEPVVGQSGAWPAD Trigger: ATCTGCGGGCCATGCTCCTGACTGACCCACGACTGGCTCTGAGCATCTTCTTTGGCCCATGTACCCCTTACCATTTCCGCCTGACTGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS GCA 90 bp | AGGGGCTTGATGAGGCCAATCACAGCCAGAGTTGGTTTTGGCAGATaGGCAGGGAAGATGTACTTGTACAGTGATGCCTGGCCATCCTCA | + |
|
Preference number: 5 (lower is better) Translates to: RGLMRPITARVGFGR*AGKMYLYSDAWPSS Trigger: TGAGGATGGCCAGGCATCACTGTACAAGTACATCTTCCCTGCGCATCTGCCAAAACCAACTCTGGCTGTGATTGGCCTCATCAAGCCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CCA 90 bp | GGTTTTGGCAGATGCGCAGGGAAGATGTACTTGTACAGTGATGCCTaGCCATCCTCAACTTTCACTACGGATTCATCGAGGAAGGGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: GFGRCAGKMYLYSDA*PSSTFTTDSSRKGN Trigger: GTTCCCCTTCCTCGATGAATCCGTAGTGAAAGTTGAGGATGGCCAGGCATCACTGTACAAGTACATCTTCCCTGCGCATCTGCCAAAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS GCA 90 bp | AGCCAGTCGTGGGTCAGTCAGGAGCATGGCCCGCAGATCCGGTTTTaGGTTGATAGAGGTCAGGAGGTCATCTATGTATGTTATATAATC | + |
|
Preference number: 5 (lower is better) Translates to: SQSWVSQEHGPQIRF*VDRGQEVIYVCYII Trigger: GATTATATAACATACATAGATGACCTCCTGACCTCTATCAACGCAAAACCGGATCTGCGGGCCATGCTCCTGACTGACCCACGACTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS TCA 90 bp | CATGTTCTGAAATCGTGTCATGAATATCATGTCCCATGGGTACCCTaGATCAAAGACTCGGCTGATCACCCATGCCCCTCCAGTAGTGCT | + |
|
Preference number: 5 (lower is better) Translates to: HVLKSCHEYHVPWVP*IKDSADHPCPSSSA Trigger: AGCACTACTGGAGGGGCATGGGTGATCAGCCGAGTCTTTGATTCAGGGTACCCATGGGACATGATATTCATGACACGATTTCAGAACATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046049.14 ENSMUST00000134098.8 |
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| CDS TCA 90 bp | CAGAGTTGGTTTTGGCAGATGCGCAGGGAAGATGTACTTGTACAGTaGTGCCTGGCCATCCTCAACTTTCACTACGGATTCATCGAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: QSWFWQMRREDVLVQ*CLAILNFHYGFIEE Trigger: TTCCTCGATGAATCCGTAGTGAAAGTTGAGGATGGCCAGGCATCACTGTACAAGTACATCTTCCCTGCGCATCTGCCAAAACCAACTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CAA 90 bp | GCCAGTGAGGTGAACCGGAAAGGGGAGGGGGTAGGGTTTCATTCTTTGGATATGTTTTCCTTTACCTCCTaGATGCTGGGCTTGATAAAC | + |
|
Preference number: 5 (lower is better) Translates to: ASEVNRKGEGVGFHSLDMFSFTS*MLGLIN Trigger: GTTTATCAAGCCCAGCATCAAGGAGGTAAAGGAAAA...CATATCCAAAGAATGAAACCCTACCCCCTCCCCTTTCCGGTTCACCTCACTGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CAA 90 bp | CGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGGGCCTGCCAAACCCGCTATGCTaGTTTTTCTTCCGTTCATTA | + |
|
Preference number: 5 (lower is better) Translates to: RKNAQSILWGQLLPEKGLPNPLC*FFFRSL Trigger: TAATGAACGGAAGAAAAACAAGCATAGCGGGTTTGG...CAGGCCCTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CAA 90 bp | CGAAAGAATGCTCAGAGTATTCTCTGGGGGCAGCTTCTTCCTGAAAAGGGCCTGCCAGGAATAGAGAATTaGGCACAAAGTTTGGATAGT | + |
|
Preference number: 5 (lower is better) Translates to: RKNAQSILWGQLLPEKGLPGIEN*AQSLDS Trigger: ACTATCCAAACTTTGTGCCAAATTCTCTATTCCTGG...CAGGCCCTTTTCAGGAAGAAGCTGCCCCCAGAGAATACTCTGAGCATTCTTTCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CCA 90 bp | AGTATATCCAGTCGCAAAGACGATGATGTCAATGGGCTCCTCCTTTaGTGTGTTGTTGAACACGACAGAGTTTTCCTTTACCTCCTTGAT | + |
|
Preference number: 5 (lower is better) Translates to: SISSRKDDDVNGLLL*CVVEHDRVFLYLLD Trigger: ATCAAGGAGGTAAAGGAAAACTCTGTCGTGTTCAACAACACACCAAAGGAGGAGCCCATTGACATCATCGTCTTTGCGACTGGATATACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CCA 90 bp | ACTCGCTTGTCCTTAAATATGTCTGGATGTTTATACTGTCGGCTGTaGAAGTACTCCCCCTTAAAAGTTAGTATACCTGGGAAGGAATCC | + |
|
Preference number: 5 (lower is better) Translates to: TRLSLNMSGCLYCRL*KYSPLKVSIPGKES Trigger: GGATTCCTTCCCAGGTATACTAACTTTTAAGGGGGAGTACTTCCACAGCCGACAGTATAAACATCCAGACATATTTAAGGACAAGCGAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000046049.14 ENSMUST00000131058.8 ENSMUST00000134098.8 ENSMUST00000193078.6 |
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| CDS-3UTR CAA 90 bp | AAGGGCCTGGATCCTTCCAACATTTTAAGTGAACAAAAGTGCTGGACCTTATCTTCCTTTGGTGTGTTGTaGAACACGACAGAGTTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: KGLDPSNILSEQKCWTLSSFGVL*NTTEFS Trigger: GGAAAACTCTGTCGTGTTCAACAACACACCAAAGGA...AGATAAGGTCCAGCACTTTTGTTCACTTAAAATGTTGGAAGGATCCAGGCCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CAA 90 bp | AGAGGAGTTGGAACGTTATACTCCATACATTTGAAAAGCCAGTTAGATCTTTCACAATCACAGCCAGAGTaGGTTTTGGCAGATGCGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RGVGTLYSIHLKSQLDLSQSQPE*VLADAQ Trigger: CTGCGCATCTGCCAAAACCAACTCTGGCTGTGATTG...TGAAAGATCTAACTGGCTTTTCAAATGTATGGAGTATAACGTTCCAACTCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CAA 90 bp | AGGCAGTTGTTGCCAAATCCCATTGAGACATCAAGTGCAAACAGAAAGATTTTGCCAGGAATAGAGAATTaGGCACAAAGTTTGGATAGT | + |
|
Preference number: 5 (lower is better) Translates to: RQLLPNPIETSSANRKILPGIEN*AQSLDS Trigger: ACTATCCAAACTTTGTGCCAAATTCTCTATTCCTGG...CAAAATCTTTCTGTTTGCACTTGATGTCTCAATGGGATTTGGCAACAACTGCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111518.3 |
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| CDS-3UTR CAA 90 bp | ATTTTAAGTGAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGAACTACAAGGACTCGCTaGTCCTTAAATATGTCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: ILSEQKCWTLSSGIKPNGTTRTR*SLNMSG Trigger: TCCAGACATATTTAAGGACAAGCGAGTCCTTGTAGT...TCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACTTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS-3UTR CAA 90 bp | ATTTTAAGTGAACAAAAGTGCTGGACCTTATCTTCTGGCATTAAACCTAATGGATGTTATATAATCTGTTaGCAAAGCCTTGCAGTAGCA | + |
|
Preference number: 5 (lower is better) Translates to: ILSEQKCWTLSSGIKPNGCYIIC*QSLAVA Trigger: TGCTACTGCAAGGCTTTGCAAACAGATTATATAACA...TCCATTAGGTTTAATGCCAGAAGATAAGGTCCAGCACTTTTGTTCACTTAAAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 90 bp | CATCGAGCTTGTGTCTCTCCTGTGGGTACCATGGAGCCCAGGGGCTaGATGAGGCCAATCACAGCCAGAGTTGGTTTTGGCAGATGCGCA | + |
|
Preference number: 6 (lower is better) Translates to: HRACVSPVGTMEPRG*MRPITARVGFGRCA Trigger: TGCGCATCTGCCAAAACCAACTCTGGCTGTGATTGGCCTCATCAAGCCCCTGGGCTCCATGGTACCCACAGGAGAGACACAAGCTCGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS GCA 72 bp | GGCGGAAATGGTAAGGGGTACATGGGCCAAAGAAGATaGTCAGAGCCAGTCGTGGGTCAGTCAGGAGCATGG | + |
|
Preference number: 6 (lower is better) Translates to: GGNGKGYMGQRR*SEPVVGQSGAW Trigger: CCATGCTCCTGACTGACCCACGACTGGCTCTGAGCATCTTCTTTGGCCCATGTACCCCTTACCATTTCCGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CCA 72 bp | GCCCAGGGGCTTGATGAGGCCAATCACAGCCAGAGTTaGTTTTGGCAGATGCGCAGGGAAGATGTACTTGTA | + |
|
Preference number: 6 (lower is better) Translates to: AQGLDEANHSQS*FWQMRREDVLV Trigger: TACAAGTACATCTTCCCTGCGCATCTGCCAAAACCAACTCTGGCTGTGATTGGCCTCATCAAGCCCCTGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS GCA 72 bp | TGGGTCAGTCAGGAGCATGGCCCGCAGATCCGGTTTTaGGTTGATAGAGGTCAGGAGGTCATCTATGTATGT | + |
|
Preference number: 6 (lower is better) Translates to: WVSQEHGPQIRF*VDRGQEVIYVC Trigger: ACATACATAGATGACCTCCTGACCTCTATCAACGCAAAACCGGATCTGCGGGCCATGCTCCTGACTGACCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS TCA 72 bp | CTTGGCGGTGGTAATGTAGTTGCACCTTTTAGGACCTaGACAACCCATCGAGCTTGTGTCTCTCCTGTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: LGGGNVVAPFRT*TTHRACVSPVG Trigger: ACCCACAGGAGAGACACAAGCTCGATGGGTTGTTCAGGTCCTAAAAGGTGCAACTACATTACCACCGCCAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 90 bp | CCAGTCGCAAAGACGATGATGTCAATGGGCTCCTCCTTTGGTGTGTaGTTGAACACGACAGAGTTTTCCTTTACCTCCTTGATGCTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: PVAKTMMSMGSSFGV*LNTTEFSFTSLMLG Trigger: GCCCAGCATCAAGGAGGTAAAGGAAAACTCTGTCGTGTTCAACAACACACCAAAGGAGGAGCCCATTGACATCATCGTCTTTGCGACTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS TCA 72 bp | AAATCGTGTCATGAATATCATGTCCCATGGGTACCCTaGATCAAAGACTCGGCTGATCACCCATGCCCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: KSCHEYHVPWVP*IKDSADHPCPS Trigger: GGAGGGGCATGGGTGATCAGCCGAGTCTTTGATTCAGGGTACCCATGGGACATGATATTCATGACACGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046049.14 ENSMUST00000134098.8 |
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| CDS CCA 72 bp | AGATGCGCAGGGAAGATGTACTTGTACAGTGATGCCTaGCCATCCTCAACTTTCACTACGGATTCATCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: RCAGKMYLYSDA*PSSTFTTDSSR Trigger: CCTCGATGAATCCGTAGTGAAAGTTGAGGATGGCCAGGCATCACTGTACAAGTACATCTTCCCTGCGCATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 90 bp | GTCGCAAAGACGATGATGTCAATGGGCTCCTCCTTTGGTGTGTTGTaGAACACGACAGAGTTTTCCTTTACCTCCTTGATGCTGGGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: VAKTMMSMGSSFGVL*NTTEFSFTSLMLGL Trigger: CAAGCCCAGCATCAAGGAGGTAAAGGAAAACTCTGTCGTGTTCAACAACACACCAAAGGAGGAGCCCATTGACATCATCGTCTTTGCGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS TCA 72 bp | TTTTGGCAGATGCGCAGGGAAGATGTACTTGTACAGTaGTGCCTGGCCATCCTCAACTTTCACTACGGATTC | + |
|
Preference number: 6 (lower is better) Translates to: FWQMRREDVLVQ*CLAILNFHYGF Trigger: GAATCCGTAGTGAAAGTTGAGGATGGCCAGGCATCACTGTACAAGTACATCTTCCCTGCGCATCTGCCAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 72 bp | TCAGTCAGGAGCATGGCCCGCAGATCCGGTTTTGCGTaGATAGAGGTCAGGAGGTCATCTATGTATGTTATA | + |
|
Preference number: 6 (lower is better) Translates to: SVRSMARRSGFA*IEVRRSSMYVI Trigger: TATAACATACATAGATGACCTCCTGACCTCTATCAACGCAAAACCGGATCTGCGGGCCATGCTCCTGACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 72 bp | TCAAAGGAAGATGGGGATTCTTGTATGGTTCGAGTTTaGGTGACTTTCACTGTTCGGTCCCACTGGGTCAAG | + |
|
Preference number: 6 (lower is better) Translates to: SKEDGDSCMVRV*VTFTVRSHWVK Trigger: CTTGACCCAGTGGGACCGAACAGTGAAAGTCACCAAAACTCGAACCATACAAGAATCCCCATCTTCCTTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CCA 72 bp | AGTCGCAAAGACGATGATGTCAATGGGCTCCTCCTTTaGTGTGTTGTTGAACACGACAGAGTTTTCCTTTAC | + |
|
Preference number: 6 (lower is better) Translates to: SRKDDDVNGLLL*CVVEHDRVFLY Trigger: GTAAAGGAAAACTCTGTCGTGTTCAACAACACACCAAAGGAGGAGCCCATTGACATCATCGTCTTTGCGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 72 bp | AAGACGATGATGTCAATGGGCTCCTCCTTTGGTGTGTaGTTGAACACGACAGAGTTTTCCTTTACCTCCTTG | + |
|
Preference number: 6 (lower is better) Translates to: KTMMSMGSSFGV*LNTTEFSFTSL Trigger: CAAGGAGGTAAAGGAAAACTCTGTCGTGTTCAACAACACACCAAAGGAGGAGCCCATTGACATCATCGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 72 bp | GTGCCAGAATTCCCCATTCCAACTACAAGGACTCGCTaGTCCTTAAATATGTCTGGATGTTTATACTGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: VPEFPIPTTRTR*SLNMSGCLYCR Trigger: CCGACAGTATAAACATCCAGACATATTTAAGGACAAGCGAGTCCTTGTAGTTGGAATGGGGAATTCTGGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000046049.14 ENSMUST00000131058.8 ENSMUST00000134098.8 ENSMUST00000193078.6 |
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| CDS CAA 72 bp | GGTCAGGAGGTCATCTATGTATGTTATATAATCTGTTaGCAAAGCCTTGCAGTAGCACAAGCCAAACCCGCT | + |
|
Preference number: 6 (lower is better) Translates to: GQEVIYVCYIIC*QSLAVAQAKPA Trigger: AGCGGGTTTGGCTTGTGCTACTGCAAGGCTTTGCAAACAGATTATATAACATACATAGATGACCTCCTGACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CAA 90 bp | GTTGATAGAGGTCAGGAGGTCATCTATGTATGTTATATAATCTGTTaGCAAAGCCTTGCAGTAGCACAAGCCAAACCCGCTATGCTTGTT | + |
|
Preference number: 6 (lower is better) Translates to: VDRGQEVIYVCYIIC*QSLAVAQAKPAMLV Trigger: AACAAGCATAGCGGGTTTGGCTTGTGCTACTGCAAGGCTTTGCAAACAGATTATATAACATACATAGATGACCTCCTGACCTCTATCAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046049.14 |
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| CDS CCA 72 bp | TCCTTAAATATGTCTGGATGTTTATACTGTCGGCTGTaGAAGTACTCCCCCTTAAAAGTTAGTATACCTGGG | + |
|
Preference number: 6 (lower is better) Translates to: SLNMSGCLYCRL*KYSPLKVSIPG Trigger: CCCAGGTATACTAACTTTTAAGGGGGAGTACTTCCACAGCCGACAGTATAAACATCCAGACATATTTAAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000046049.14 ENSMUST00000131058.8 ENSMUST00000134098.8 ENSMUST00000193078.6 |
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