RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FMNL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036053

Ensembl transcript IDs: ENSMUST00000049483.14, ENSMUST00000050719.13, ENSMUST00000090952.11, ENSMUST00000127122.9, ENSMUST00000155586.9

Found 469 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTaGTCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCT +
Preference number: 1 (lower is better)
Translates to: SSHIVISAPLTERRF*SSKRRLTLRLTASA
Trigger: AGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
3UTR GCA 90 bp CATCCTGCTTGTACTTTGCTGAGACTAAAGAAGGATGTAATTGTATaGCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTGGT +
Preference number: 1 (lower is better)
Translates to: HPACTLLRLKKDVIV*QLPSPVSSPLLGVG
Trigger: ACCAACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTTTAGTCTCAGCAAAGTACAAGCAGGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR TCA 90 bp ACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCACAGAAACAACATaGAATAGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGC +
Preference number: 1 (lower is better)
Translates to: TSECLCAWQPCTETT*NRIKSNDLEWHCSC
Trigger: GCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCTATTTCATGTTGTTTCTGTGCAAGGCTGCCATGCACAAAGGCATTCACTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR TCA 90 bp CTTAACACAGTTCTGCAAATAAGTCTTCAATGTTTTATGCCATCTTaGAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCACA +
Preference number: 1 (lower is better)
Translates to: LNTVLQISLQCFMPS*SHTSECLCAWQPCT
Trigger: TGTGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAAAACATTGAAGACTTATTTGCAGAACTGTGTTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR TCA 90 bp GCAAATAAGTCTTCAATGTTTTATGCCATCTTGAAGTCATACAAGTaGATGCCTTTGTGCATGGCAGCCTTGCACAGAAACAACATGAAA +
Preference number: 1 (lower is better)
Translates to: ANKSSMFYAILKSYK*MPLCMAALHRNNMK
Trigger: TTTCATGTTGTTTCTGTGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAAAACATTGAAGACTTATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTGGAATGGCAGTTTCTTaGACACCCTCTCATGAAGGT +
Preference number: 2 (lower is better)
Translates to: RMTWSGTAVASCLYFAETGMAVS*TPSHEG
Trigger: ACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCC...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTGGAATGGCAGTTTCTTaGACACCCTCTCATGAAGGT +
Preference number: 2 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLGMAVS*TPSHEG
Trigger: ACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCC...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTCAGGGTGGGCCACAATaGACAATCAAAATGGCAAAT +
Preference number: 2 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVQGGPQ*TIKMAN
Trigger: ATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTG...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CCA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCAATCTGTAGTGAAGGCTaGAATGGCAGTTTCTTGGAC +
Preference number: 2 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLAICSEG*NGSFLD
Trigger: GTCCAAGAAACTGCCATTCCAGCCTTCACTACAGAT...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR GCA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCAAAGGATGTAATTGTATaGCAGCTTCCATCTCCCGTT +
Preference number: 2 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLAKDVIV*QLPSPV
Trigger: AACGGGAGATGGAAGCTGGCATACAATTACATCCTT...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CCA 90 bp CCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAAAAATCTGTAGTGAAGGCTaGAATGGCAGTTTCTTGGAC +
Preference number: 2 (lower is better)
Translates to: PLFTDYQEIRVGHNGQSKICSEG*NGSFLD
Trigger: GTCCAAGAAACTGCCATTCCAGCCTTCACTACAGAT...TTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR CAA 90 bp GCCATTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTaGTACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCC +
Preference number: 2 (lower is better)
Translates to: AITRQTEEYANIIVH*YTGKWAVCFKQMHA
Trigger: GGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAATGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR TCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGATAGGCATACTACTGTaGAATGTGGTAACTGACTTT +
Preference number: 2 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQIGILL*NVVTDF
Trigger: AAAGTCAGTTACCACATTTCACAGTAGTATGCCTAT...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR TCA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTATTAAATCTGAGCCCTTaGGAGTATTTCATCTGTAGT +
Preference number: 2 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLLNLSP*EYFICS
Trigger: ACTACAGATGAAATACTCTCAAGGGCTCAGATTTAA...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR GCA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTTTTGCTTTAAGCAAATaGACGCCTTTGGAAAGCAGC +
Preference number: 2 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVFALSK*TPLESS
Trigger: GCTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAA...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR TCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGTGTTTTATGCCATCTTaGAGTCATACAAGTGAATGC +
Preference number: 2 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMCFMPS*SHTSEC
Trigger: GCATTCACTTGTATGACTTCAAGATGGCATAAAACA...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR TCA 72 bp GAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATaGAGGTGGTCTCCAGTCACATTGTTATTTCGGCAC +
Preference number: 3 (lower is better)
Translates to: EGWNGSFLDTLS*RWSPVTLLFRH
Trigger: GTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
3UTR TCA 72 bp ATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTaGTCATCGAAGCGCCGTCTCACACTTCGTCTCACC +
Preference number: 3 (lower is better)
Translates to: IVISAPLTERRF*SSKRRLTLRLT
Trigger: GGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
3UTR CCA 72 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTaGACACCCTCTCATGAAGGTGGTCTCCAGTCACAT +
Preference number: 3 (lower is better)
Translates to: ISSVVKAGMAVS*TPSHEGGLQSH
Trigger: ATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
3UTR-3UTR CAA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATCCCGTTTCCAGTCCCTaGTTAGGAGTTGGTGAATAT +
Preference number: 3 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINPVSSP*LGVGEY
Trigger: ATATTCACCAACTCCTAACAAGGGACTGGAAACGGG...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR GCA 72 bp TGTACTTTGCTGAGACTAAAGAAGGATGTAATTGTATaGCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTA +
Preference number: 3 (lower is better)
Translates to: CTLLRLKKDVIV*QLPSPVSSPLL
Trigger: TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTTTAGTCTCAGCAAAGTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR GCA 72 bp ATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTTaGTTTAAGCAAATGCACGCCTTTGGAAAGCAGCTG +
Preference number: 3 (lower is better)
Translates to: IIVHLYTGKWAV*FKQMHAFGKQL
Trigger: CAGCTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTACAAATGGACAATAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CAA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTGCAGTTGCATCCTGCTaGTACTTTGCTGAGACTAAA +
Preference number: 3 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSAVASC*YFAETK
Trigger: TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGC...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CAA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTGCTTCAGTCCAGTCTTaGACTTTGGGAAAGATGGAA +
Preference number: 3 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSASVQS*TLGKME
Trigger: TTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGC...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTTTGTGCATGGCAGCCTaGCACAGAAACAACATGAAA +
Preference number: 3 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVLCMAA*HRNNMK
Trigger: TTTCATGTTGTTTCTGTGCAAGGCTGCCATGCACAA...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR TCA 72 bp GTTCTGCAAATAAGTCTTCAATGTTTTATGCCATCTTaGAGTCATACAAGTGAATGCCTTTGTGCATGGCAG +
Preference number: 3 (lower is better)
Translates to: VLQISLQCFMPS*SHTSECLCAWQ
Trigger: CTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAAAACATTGAAGACTTATTTGCAGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGACTGTTGCCCACAGGTaGGGGCAGGTTGCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGTVAHR*GQVAPS
Trigger: AGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGT...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTGGTGGCCCCTGGAACTaGTCCCACATAGTTACCCAC +
Preference number: 4 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGGGPWN*SHIVTH
Trigger: GTGGGTAACTATGTGGGATCAGTTCCAGGGGCCACC...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCAGCGGGACACACTGTTaGCCACAGGTGAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFSGTHC*PQVRAG
Trigger: ACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCT...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCCTGAGGGTCCTGAGGTaGTGGCCCCTGGAACTGATC +
Preference number: 4 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFLRVLR*WPLELI
Trigger: GATCAGTTCCAGGGGCCACCACCTCAGGACCCTCAG...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGGGTGGCCCCTGGAACTaGTCCCACATAGTTACCCAC +
Preference number: 4 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGGGPWN*SHIVTH
Trigger: GTGGGTAACTATGTGGGATCAGTTCCAGGGGCCACC...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCACTGTGCCGTTGATCTaGTTGGGCTTCAGGGCGACC +
Preference number: 4 (lower is better)
Translates to: AGSDHRSAVSHFVSPHRLTVPLI*LGFRAT
Trigger: GGTCGCCCTGAAGCCCAATCAGATCAACGGCACAGT...GAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCTTGAAATCGGTCTGCTaGGAGTCCATGCTCCCCGCG +
Preference number: 4 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFLKSVC*ESMLPA
Trigger: CGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAA...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGCGGGACACACTGTTaGCCACAGGTGAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCSGTHC*PQVRAG
Trigger: ACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCT...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGCCTGCTCCAGGGCTTTaGTTTGTCCACCGTACTCTC +
Preference number: 4 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRPAPGL*FVHRTL
Trigger: GAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGG...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCGAAAACCACTGTAGGTaGAGAAGTCCCAGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: GSDHRSAVSHFVSPHRLVENHCR*RSPRQR
Trigger: CCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTC...GACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTGAAACGGTCCTCGTCTaGCAAGTTCTCCAAGGGCTT +
Preference number: 4 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGETVLV*QVLQGL
Trigger: AAGCCCTTGGAGAACTTGTCAGACGAGGACCGTTTC...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTTTGAAATCGGTCTGCTaGGAGTCCATGCTCCCCGCG +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCLKSVC*ESMLPA
Trigger: CGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAA...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTGGAGACTTTGCATCCTaGTGCTCCATCAGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGGDFAS*CSIRAS
Trigger: AGAAGCCCTGATGGAGCAGCAGGATGCAAAGTCTCC...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGACTGCCGCAGTAGCCTaGCTTTGTCAGGAGGTAGGT +
Preference number: 4 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRTAAVA*LCQEVG
Trigger: ACCTACCTCCTGACAAAGCCAGGCTACTGCGGCAGT...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTGAAAACCACTGTAGGTaGAGAAGTCCCAGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCENHCR*RSPRQR
Trigger: CCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTC...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCAGCTTGCCCTCGTTGTaGAGGAGGAACTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFSLPSL*RRNSFS
Trigger: GCTGAAAGAGTTCCTCCTTCACAACGAGGGCAAGCT...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGGGTCCTCGATGGACCTaGTCCAGGGCTTTGATTTGT +
Preference number: 4 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGGPRWT*SRALIC
Trigger: ACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACC...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTGTTCTCCAGGGAGACTaGAGCAGCTTTTTCCACGTA +
Preference number: 4 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGVLQGD*SSFFHV
Trigger: TACGTGGAAAAAGCTGCTGCAGTCTCCCTGGAGAAC...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCCATCGGCAGCTTCAATaGCACGTTGTGCGCCTTGAA +
Preference number: 4 (lower is better)
Translates to: GSDHRSAVSHFVSPHRLVHRQLQ*HVVRLE
Trigger: TTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATG...GACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCACAGCCGAAGCACTTTaGCCTCATTCTCAGTTGGCA +
Preference number: 4 (lower is better)
Translates to: AGSDHRSAVSHFVSPHRLTAEAL*PHSQLA
Trigger: TGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGT...GAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGCTTGCCCTCGTTGTaGAGGAGGAACTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCSLPSL*RRNSFS
Trigger: GCTGAAAGAGTTCCTCCTTCACAACGAGGGCAAGCT...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCGACAAGACAAACGGCTaGCAACAGCTCCAAGACAAG +
Preference number: 4 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFDKTNG*QQLQDK
Trigger: CTTGTCTTGGAGCTGTTGGCAGCCGTTTGTCTTGTC...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTATCTTCGCGTCCTCCTaGAGTTTCTTCAGCTTGCCC +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCIFASS*SFFSLP
Trigger: GGGCAAGCTGAAGAAACTGCAGGAGGACGCGAAGAT...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGATGGGAAGGAGACTTTaGATCCTGCTGCTCCATCAG +
Preference number: 4 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGMGRRL*ILLLHQ
Trigger: CTGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCAT...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CTTGGACACCCTCTCATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCAACTGTTGCCCACAGGTaGGGGCAGGTTGCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: LGHPLMKVVSSHIVISAPTVAHR*GQVAPS
Trigger: AGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGT...TGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTGCTGCTGCCTCTTTaGTTTATGGGAAGGAGACTT +
Preference number: 4 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGLLLPL*FMGRRL
Trigger: AAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAA...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGTTCTCATTGTCATACTaGCGCAGTAGCCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRFSLSY*RSSLAL
Trigger: CAAAGCCAGGCTACTGCGGCAGTATGACAATGAGAA...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTGTTCTCCAGGGAGACTaGAGCAGCTTTTTCCACGTA +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCVLQGD*SSFFHV
Trigger: TACGTGGAAAAAGCTGCTGCAGTCTCCCTGGAGAAC...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGCTCATTGACGGCGTGTaGATGAGACATGACCATGTT +
Preference number: 4 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGLIDGV*MRHDHV
Trigger: AACATGGTCATGTCTCATCCACACGCCGTCAATGAG...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAGGGTCCTGAGGTGGTaGCCCCTGGAACTGATCCCA +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETRVLRW*PLELIP
Trigger: TGGGATCAGTTCCAGGGGCCACCACCTCAGGACCCT...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp CTTGGACACCCTCTCATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCAAGGGTCCTGAGGTGGTaGCCCCTGGAACTGATCCCA +
Preference number: 4 (lower is better)
Translates to: LGHPLMKVVSSHIVISAPRVLRW*PLELIP
Trigger: TGGGATCAGTTCCAGGGGCCACCACCTCAGGACCCT...TGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGTTGCTGCTGCCTCTTTaGTTTATGGGAAGGAGACTT +
Preference number: 4 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRLLLPL*FMGRRL
Trigger: AAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAA...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCCCACCGTACTCTCCATaGTACTTTCCACACTTTCAA +
Preference number: 4 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFPPYSP*YFPHFQ
Trigger: TTGAAAGTGTGGAAAGTACCATGGAGAGTACGGTGG...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGCTGAGGGTCCTGAGGTaGTGGCCCCTGGAACTGATC +
Preference number: 4 (lower is better)
Translates to: EGCNCMPASISRFQSLVRLRVLR*WPLELI
Trigger: GATCAGTTCCAGGGGCCACCACCTCAGGACCCTCAG...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTGGTATACTCTCTCTTaGTTAAATCCATCCCCCTCT +
Preference number: 4 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGWYTLS*LNPSPS
Trigger: AGAGGGGGATGGATTTAACCAAGAGAGAGTATACCA...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGGCACGTTGTGCGCCTTaGAATCGGTCTGCTGCGAGT +
Preference number: 4 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEARCAP*NRSAAS
Trigger: ACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGC...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGGCACGTTGTGCGCCTTaGAATCGGTCTGCTGCGAGT +
Preference number: 4 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLARCAP*NRSAAS
Trigger: ACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGC...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGACTGTTGCCCACAGGTaGGGGCAGGTTGCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: MKVVSSHIVISAPLTERRTVAHR*GQVAPS
Trigger: AGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGT...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTGGCTCGTAAACACATaGTACAAACGTGAACATCAT +
Preference number: 4 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGWLVNT*YKREHH
Trigger: ATGATGTTCACGTTTGTATCATGTGTTTACGAGCCA...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGGGTGGCCCCTGGAACTaGTCCCACATAGTTACCCAC +
Preference number: 4 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEGGPWN*SHIVTH
Trigger: GTGGGTAACTATGTGGGATCAGTTCCAGGGGCCACC...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGACTGTGCCGTTGATCTaGTTGGGCTTCAGGGCGACC +
Preference number: 4 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPTVPLI*LGFRAT
Trigger: GGTCGCCCTGAAGCCCAATCAGATCAACGGCACAGT...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGCAGGTGAGGGCAGGTTaGTCCCTCTGTGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQQVRAG*SLCAGP
Trigger: AGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTG...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCAGCGGGACACACTGTTaGCCACAGGTGAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPSGTHC*PQVRAG
Trigger: ACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCT...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTATGATGGTCATCTTCTaGAGCAGCCGCTCAATCTTA +
Preference number: 4 (lower is better)
Translates to: VLIIEAPSHTSSHRIGSSMMVIF*SSRSIL
Trigger: TAAGATTGAGCGGCTGCTGCAGAAGATGACCATCAT...AGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAAC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGCTCATTTTCCTCTTCTaGTTGCTTGTAGGCTTTCAC +
Preference number: 4 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRLIFLF*LLVGFH
Trigger: GTGAAAGCCTACAAGCAAGCAGAAGAGGAAAATGAG...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCAAGGGTCCTGAGGTGGTaGCCCCTGGAACTGATCCCA +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSRVLRW*PLELIP
Trigger: TGGGATCAGTTCCAGGGGCCACCACCTCAGGACCCT...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGCCTGCTCCAGGGCTTTaGTTTGTCCACCGTACTCTC +
Preference number: 4 (lower is better)
Translates to: EGCNCMPASISRFQSLVRPAPGL*FVHRTL
Trigger: GAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGG...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGCCTGCTCCAGGGCTTTaGTTTGTCCACCGTACTCTC +
Preference number: 4 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEPAPGL*FVHRTL
Trigger: GAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGG...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTACTGTTGCCCACAGGTaGGGGCAGGTTGCTCCCTCT +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLTVAHR*GQVAPS
Trigger: AGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGT...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTAGGGTAGACTGTCTTTaGATGGCTTCTTCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: VLIIEAPSHTSSHRIGSSRVDCL*MASSFS
Trigger: AGAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCT...AGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGACGTGCCAGAGGCCATaGCTGGCAGTATGGCAATGT +
Preference number: 4 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPTCQRP*LAVWQC
Trigger: ACATTGCCATACTGCCAGTCATGGCCTCTGGCACGT...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGGGTGGCCCCTGGAACTaGTCCCACATAGTTACCCAC +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQGGPWN*SHIVTH
Trigger: GTGGGTAACTATGTGGGATCAGTTCCAGGGGCCACC...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCATCTTCTTGAGCTTTTaGGATGACTTGATAGAGACG +
Preference number: 4 (lower is better)
Translates to: GSDHRSAVSHFVSPHRLVIFLSF*DDLIET
Trigger: CGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAGAT...GACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTTGAAATCGGTCTGCTaGGAGTCCATGCTCCCCGCG +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPLKSVC*ESMLPA
Trigger: CGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAA...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAAAGGTTGCTCCCTCTGTaGAGGTCCTCGATGGACCTG +
Preference number: 4 (lower is better)
Translates to: MTWSGTAVASCLYFAETKRLLPL*RSSMDL
Trigger: CAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCT...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCAGGTTGCTCCCTCTGTaGAGGTCCTCGATGGACCTG +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPRLLPL*RSSMDL
Trigger: CAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCT...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCACAGGTGAGGGCAGGTTaGTCCCTCTGTGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLAQVRAG*SLCAGP
Trigger: AGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTG...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTGATAGAGACGGATGCTaGTATAATTGCGTGAAGTTG +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCDRDGC*YNCVKL
Trigger: CAACTTCACGCAATTATAGCAGCATCCGTCTCTATC...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCAGACTGCTCCTCGTTTaGTGCTATTCATATAGTTTC +
Preference number: 4 (lower is better)
Translates to: GSDHRSAVSHFVSPHRLVRLLLV*CYSYSF
Trigger: GAAACTATATGAATAGCAGCAAACGAGGAGCAGTCT...GACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTATCTTCGCGTCCTCCTaGAGTTTCTTCAGCTTGCCC +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETIFASS*SFFSLP
Trigger: GGGCAAGCTGAAGAAACTGCAGGAGGACGCGAAGAT...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAACTCCTCCAGTTCACCTaGCTCGGGCATCGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHELLQFT*LGHRQL
Trigger: AAGCTGCCGATGCCCGAGCCAGGTGAACTGGAGGAG...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp ATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCTTCCTGGTTACAGCTaGGTCCAGGTAGCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: INRTQVLIIEAPSHTSSHLPGYS*VQVAFE
Trigger: CTCAAAGGCTACCTGGACCCAGCTGTAACCAGGAAG...GTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp ACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAACTGAGGGTCCTGAGGTaGTGGCCCCTGGAACTGATC +
Preference number: 4 (lower is better)
Translates to: THPLFTDYQEIRVGHNGQLRVLR*WPLELI
Trigger: GATCAGTTCCAGGGGCCACCACCTCAGGACCCTCAG...TTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGCACGTTGTGCGCCTTaGAATCGGTCTGCTGCGAGT +
Preference number: 4 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLARCAP*NRSAAS
Trigger: ACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGC...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCGCACGTTGTGCGCCTTaGAATCGGTCTGCTGCGAGT +
Preference number: 4 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIARCAP*NRSAAS
Trigger: ACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGC...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAACCTGCTCCAGGGCTTTaGTTTGTCCACCGTACTCTC +
Preference number: 4 (lower is better)
Translates to: MTWSGTAVASCLYFAETKPAPGL*FVHRTL
Trigger: GAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGG...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCAACGTGCCAGAGGCCATaGCTGGCAGTATGGCAATGT +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSTCQRP*LAVWQC
Trigger: ACATTGCCATACTGCCAGTCATGGCCTCTGGCACGT...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCGAAAACCACTGTAGGTaGAGAAGTCCCAGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIENHCR*RSPRQR
Trigger: CCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTC...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAAAACAGGTGAGGGCAGGTTaGTCCCTCTGTGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: PLFTDYQEIRVGHNGQSKQVRAG*SLCAGP
Trigger: AGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTG...TTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAACAGGTGAGGGCAGGTTaGTCCCTCTGTGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIEQVRAG*SLCAGP
Trigger: AGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTG...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGATCTTCGCGTCCTCCTaGAGTTTCTTCAGCTTGCCC +
Preference number: 4 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPIFASS*SFFSLP
Trigger: GGGCAAGCTGAAGAAACTGCAGGAGGACGCGAAGAT...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCATAAGAGCTTGTTCCTaGTTTTTCCTCAGCTCATTT +
Preference number: 4 (lower is better)
Translates to: AGSDHRSAVSHFVSPHRLIRACS*FFLSSF
Trigger: AAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTTAT...GAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGACTGCCGCAGTAGCCTaGCTTTGTCAGGAGGTAGGT +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQTAAVA*LCQEVG
Trigger: ACCTACCTCCTGACAAAGCCAGGCTACTGCGGCAGT...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTACTGCCGCAGTAGCCTaGCTTTGTCAGGAGGTAGGT +
Preference number: 4 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVTAAVA*LCQEVG
Trigger: ACCTACCTCCTGACAAAGCCAGGCTACTGCGGCAGT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGCTTCCTGGTTACAGCTaGGTCCAGGTAGCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: NRMTWSGTAVASCLYFAELPGYS*VQVAFE
Trigger: CTCAAAGGCTACCTGGACCCAGCTGTAACCAGGAAG...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATAGGGTCCTGAGGTGGTaGCCCCTGGAACTGATCCCA +
Preference number: 4 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINRVLRW*PLELIP
Trigger: TGGGATCAGTTCCAGGGGCCACCACCTCAGGACCCT...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCAACGTGCCAGAGGCCATaGCTGGCAGTATGGCAATGT +
Preference number: 4 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLATCQRP*LAVWQC
Trigger: ACATTGCCATACTGCCAGTCATGGCCTCTGGCACGT...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTGAAACGGTCCTCGTCTaGCAAGTTCTCCAAGGGCTT +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVETVLV*QVLQGL
Trigger: AAGCCCTTGGAGAACTTGTCAGACGAGGACCGTTTC...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGGAAACGGTCCTCGTCTaGCAAGTTCTCCAAGGGCTT +
Preference number: 4 (lower is better)
Translates to: MKVVSSHIVISAPLTERRETVLV*QVLQGL
Trigger: AAGCCCTTGGAGAACTTGTCAGACGAGGACCGTTTC...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATTTGAAATCGGTCTGCTaGGAGTCCATGCTCCCCGCG +
Preference number: 4 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINLKSVC*ESMLPA
Trigger: CGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAA...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGTTCAATGGCACGTTGTaGGCCTTGAAATCGGTCTGC +
Preference number: 4 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPFNGTL*ALKSVC
Trigger: GCAGACCGATTTCAAGGCGCACAACGTGCCATTGAA...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTGGTCCTCGATGGACCTaGTCCAGGGCTTTGATTTGT +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVGPRWT*SRALIC
Trigger: ACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACC...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCAGGTCCTCGATGGACCTaGTCCAGGGCTTTGATTTGT +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSGPRWT*SRALIC
Trigger: ACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACC...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGGGTCCTCGATGGACCTaGTCCAGGGCTTTGATTTGT +
Preference number: 4 (lower is better)
Translates to: MKVVSSHIVISAPLTERRGPRWT*SRALIC
Trigger: ACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACC...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTAGCGGGACACACTGTTaGCCACAGGTGAGGGCAGGT +
Preference number: 4 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSSGTHC*PQVRAG
Trigger: ACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCT...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTGATAAAATTATTTCATaGCCGCCTCTGACAAGACAA +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCDKIIS*PPLTRQ
Trigger: TTGTCTTGTCAGAGGCGGGCATGAAATAATTTTATC...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTTTTAAATCCATAGACTaGTCCTCGTTTGCTGCTATT +
Preference number: 4 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCFKSID*SSFAAI
Trigger: AATAGCAGCAAACGAGGAGCAGTCTATGGATTTAAA...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGGTTCTCCAGGGAGACTaGAGCAGCTTTTTCCACGTA +
Preference number: 4 (lower is better)
Translates to: EGCNCMPASISRFQSLVRVLQGD*SSFFHV
Trigger: TACGTGGAAAAAGCTGCTGCAGTCTCCCTGGAGAAC...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCCATCGGCAGCTTCAATaGCACGTTGTGCGCCTTGAA +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPHRQLQ*HVVRLE
Trigger: TTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATG...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCACATCGGCAGCTTCAATaGCACGTTGTGCGCCTTGAA +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSHRQLQ*HVVRLE
Trigger: TTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATG...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCCTTCCTGGTTACAGCTaGGTCCAGGTAGCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPLPGYS*VQVAFE
Trigger: CTCAAAGGCTACCTGGACCCAGCTGTAACCAGGAAG...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAACGTGCCAGAGGCCATaGCTGGCAGTATGGCAATGT +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIETCQRP*LAVWQC
Trigger: ACATTGCCATACTGCCAGTCATGGCCTCTGGCACGT...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCACAGCCGAAGCACTTTaGCCTCATTCTCAGTTGGCA +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPTAEAL*PHSQLA
Trigger: TGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGT...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAAGCTTGCCCTCGTTGTaGAGGAGGAACTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLSLPSL*RRNSFS
Trigger: GCTGAAAGAGTTCCTCCTTCACAACGAGGGCAAGCT...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAGCTTGCCCTCGTTGTaGAGGAGGAACTCTTTCAGC +
Preference number: 4 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTISLPSL*RRNSFS
Trigger: GCTGAAAGAGTTCCTCCTTCACAACGAGGGCAAGCT...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGTTCTCATTGTCATACTaGCGCAGTAGCCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLFSLSY*RSSLAL
Trigger: CAAAGCCAGGCTACTGCGGCAGTATGACAATGAGAA...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGGACAAGACAAACGGCTaGCAACAGCTCCAAGACAAG +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQDKTNG*QQLQDK
Trigger: CTTGTCTTGGAGCTGTTGGCAGCCGTTTGTCTTGTC...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTATGATGGTCATCTTCTaGAGCAGCCGCTCAATCTTA +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETMMVIF*SSRSIL
Trigger: TAAGATTGAGCGGCTGCTGCAGAAGATGACCATCAT...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGGTTCTCCAGGGAGACTaGAGCAGCTTTTTCCACGTA +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQVLQGD*SSFFHV
Trigger: TACGTGGAAAAAGCTGCTGCAGTCTCCCTGGAGAAC...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAGGGTGTTGTGGTCATaGATGGTATACTCTCTCTTG +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETRVLWS*MVYSLL
Trigger: CAAGAGAGAGTATACCATGCATGACCACAACACCCT...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTATGGGAAGGAGACTTTaGATCCTGCTGCTCCATCAG +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVMGRRL*ILLLHQ
Trigger: CTGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCAT...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAAAAACTGCCGCAGTAGCCTaGCTTTGTCAGGAGGTAGGT +
Preference number: 4 (lower is better)
Translates to: PLFTDYQEIRVGHNGQSKTAAVA*LCQEVG
Trigger: ACCTACCTCCTGACAAAGCCAGGCTACTGCGGCAGT...TTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTCTTCCTGGTTACAGCTaGGTCCAGGTAGCCTTTGAG +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLLPGYS*VQVAFE
Trigger: CTCAAAGGCTACCTGGACCCAGCTGTAACCAGGAAG...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTCTGAGGGTCCTGAGGTaGTGGCCCCTGGAACTGATC +
Preference number: 4 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVLRVLR*WPLELI
Trigger: GATCAGTTCCAGGGGCCACCACCTCAGGACCCTCAG...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTTTCAGCAGGGTGTTGTaGTCATGCATGGTATACTCT +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETFSRVL*SCMVYS
Trigger: AGAGTATACCATGCATGACCACAACACCCTGCTGAA...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATTAGTGCAATCTCATTaGCGGCGTGTGGATGAGACA +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSLVQSH*RRVDET
Trigger: TGTCTCATCCACACGCCGTCAATGAGATTGCACTAA...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTTAGTGCAATCTCATTaGCGGCGTGTGGATGAGACA +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPLVQSH*RRVDET
Trigger: TGTCTCATCCACACGCCGTCAATGAGATTGCACTAA...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTACTGTGCCGTTGATCTaGTTGGGCTTCAGGGCGACC +
Preference number: 4 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVTVPLI*LGFRAT
Trigger: GGTCGCCCTGAAGCCCAATCAGATCAACGGCACAGT...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAATTCTCATTGTCATACTaGCGCAGTAGCCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: MTWSGTAVASCLYFAETKFSLSY*RSSLAL
Trigger: CAAAGCCAGGCTACTGCGGCAGTATGACAATGAGAA...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCAGACAAGACAAACGGCTaGCAACAGCTCCAAGACAAG +
Preference number: 4 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLADKTNG*QQLQDK
Trigger: CTTGTCTTGGAGCTGTTGGCAGCCGTTTGTCTTGTC...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATGATGGTCATCTTCTaGAGCAGCCGCTCAATCTTA +
Preference number: 4 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLMMVIF*SSRSIL
Trigger: TAAGATTGAGCGGCTGCTGCAGAAGATGACCATCAT...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAAAAGGAGACTTTGCATCCTaGTGCTCCATCAGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: PLFTDYQEIRVGHNGQSKGDFAS*CSIRAS
Trigger: AGAAGCCCTGATGGAGCAGCAGGATGCAAAGTCTCC...TTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGGAGACTTTGCATCCTaGTGCTCCATCAGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIEGDFAS*CSIRAS
Trigger: AGAAGCCCTGATGGAGCAGCAGGATGCAAAGTCTCC...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCACTCATTGACGGCGTGTaGATGAGACATGACCATGTT +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSLIDGV*MRHDHV
Trigger: AACATGGTCATGTCTCATCCACACGCCGTCAATGAG...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGCTCATTGACGGCGTGTaGATGAGACATGACCATGTT +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQLIDGV*MRHDHV
Trigger: AACATGGTCATGTCTCATCCACACGCCGTCAATGAG...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp CTTGGACACCCTCTCATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATGGTATACTCTCTCTTaGTTAAATCCATCCCCCTCT +
Preference number: 4 (lower is better)
Translates to: LGHPLMKVVSSHIVISAPWYTLS*LNPSPS
Trigger: AGAGGGGGATGGATTTAACCAAGAGAGAGTATACCA...TGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTTGGTATACTCTCTCTTaGTTAAATCCATCCCCCTCT +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETWYTLS*LNPSPS
Trigger: AGAGGGGGATGGATTTAACCAAGAGAGAGTATACCA...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTGAAGAACACGGAGGGTaGAGTTGTCTTGGGATTTTC +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVEEHGG*SCLGIF
Trigger: GAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTC...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTTAGTGCAATCTCATTaGCGGCGTGTGGATGAGACA +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLLVQSH*RRVDET
Trigger: TGTCTCATCCACACGCCGTCAATGAGATTGCACTAA...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACAGCTTTTCAGACAAATaGGAGATGTTTTCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: INRTQVLIIEAPSHTSSHSFSDK*EMFSSS
Trigger: GCTGGAAGAAAACATCTCTCATTTGTCTGAAAAGCT...GTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGCCATCCCCTTTCTTCTaGATTTTAATGGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEPSPFF*ILMVPC
Trigger: ACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGG...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTGAAAACCACTGTAGGTaGAGAAGTCCCAGGCAGCGG +
Preference number: 4 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVENHCR*RSPRQR
Trigger: CCGCTGCCTGGGACTTCTTCACCTACAGTGGTTTTC...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp CTTGGACACCCTCTCATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCAATCTTCTTGAGCTTTTaGGATGACTTGATAGAGACG +
Preference number: 4 (lower is better)
Translates to: LGHPLMKVVSSHIVISAPIFLSF*DDLIET
Trigger: CGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAGAT...TGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAATTGCTGCTGCCTCTTTaGTTTATGGGAAGGAGACTT +
Preference number: 4 (lower is better)
Translates to: MTWSGTAVASCLYFAETKLLLPL*FMGRRL
Trigger: AAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAA...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGTTCCTCTGCATAAGTTaGTTTTCCAGTTCCACGATC +
Preference number: 4 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPFLCIS*FSSSTI
Trigger: GATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAA...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTAGGGTGTTGTGGTCATaGATGGTATACTCTCTCTTG +
Preference number: 4 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVRVLWS*MVYSLL
Trigger: CAAGAGAGAGTATACCATGCATGACCACAACACCCT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTAGGGTGTTGTGGTCATaGATGGTATACTCTCTCTTG +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVRVLWS*MVYSLL
Trigger: CAAGAGAGAGTATACCATGCATGACCACAACACCCT...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCCATCGGCAGCTTCAATaGCACGTTGTGCGCCTTGAA +
Preference number: 4 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSHRQLQ*HVVRLE
Trigger: TTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATG...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCACCACCGTACTCTCCATaGTACTTTCCACACTTTCAA +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSPPYSP*YFPHFQ
Trigger: TTGAAAGTGTGGAAAGTACCATGGAGAGTACGGTGG...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCCCACCGTACTCTCCATaGTACTTTCCACACTTTCAA +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIPPYSP*YFPHFQ
Trigger: TTGAAAGTGTGGAAAGTACCATGGAGAGTACGGTGG...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTCTCATTGACGGCGTGTaGATGAGACATGACCATGTT +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLLIDGV*MRHDHV
Trigger: AACATGGTCATGTCTCATCCACACGCCGTCAATGAG...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTTTCAGCAGGGTGTTGTaGTCATGCATGGTATACTCT +
Preference number: 4 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVFSRVL*SCMVYS
Trigger: AGAGTATACCATGCATGACCACAACACCCTGCTGAA...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCGAAGAACACGGAGGGTaGAGTTGTCTTGGGATTTTC +
Preference number: 4 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIEEHGG*SCLGIF
Trigger: GAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTC...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAAGAAGAACACGGAGGGTaGAGTTGTCTTGGGATTTTC +
Preference number: 4 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEEEHGG*SCLGIF
Trigger: GAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTC...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
3UTR CAA 72 bp ATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTaGTTAGGAGTTGGTGAATATGGCTCGAACACAAAA +
Preference number: 4 (lower is better)
Translates to: IVCQLPSPVSSP*LGVGEYGSNTK
Trigger: TTTTGTGTTCGAGCCATATTCACCAACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR CAA 72 bp CTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTaGCTGAGACTAAAGAAGGATGTAATTGTATGCCAG +
Preference number: 4 (lower is better)
Translates to: LGVALQLHPACT*LRLKKDVIVCQ
Trigger: CTGGCATACAATTACATCCTTCTTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAATTAGTGCAATCTCATTaGCGGCGTGTGGATGAGACA +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIELVQSH*RRVDET
Trigger: TGTCTCATCCACACGCCGTCAATGAGATTGCACTAA...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCCCATCCCCTTTCTTCTaGATTTTAATGGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIPSPFF*ILMVPC
Trigger: ACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGG...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGTATTTTCTGCTTGCTTaGAGAAAGATCAATGGCAGG +
Preference number: 4 (lower is better)
Translates to: EGCNCMPASISRFQSLVRYFLLA*RKINGR
Trigger: CCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATA...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGTATTTTCTGCTTGCTTaGAGAAAGATCAATGGCAGG +
Preference number: 4 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLYFLLA*RKINGR
Trigger: CCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATA...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCACAGCCGAAGCACTTTaGCCTCATTCTCAGTTGGCA +
Preference number: 4 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSTAEAL*PHSQLA
Trigger: TGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGT...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATGAAACGGTCCTCGTCTaGCAAGTTCTCCAAGGGCTT +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDETVLV*QVLQGL
Trigger: AAGCCCTTGGAGAACTTGTCAGACGAGGACCGTTTC...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTTGCTGCTGCCTCTTTaGTTTATGGGAAGGAGACTT +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLLLLPL*FMGRRL
Trigger: AAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAA...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp CTTGGACACCCTCTCATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATCTAAGATCCTCGAGTaGACATTTGGAAATTTAGTG +
Preference number: 4 (lower is better)
Translates to: LGHPLMKVVSSHIVISAPSKILE*TFGNLV
Trigger: CACTAAATTTCCAAATGTTCACTCGAGGATCTTAGA...TGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049483.14
CDS-3UTR GCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGAGGTTGCTCCCTCTGTaGAGGTCCTCGATGGACCTG +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMRLLPL*RSSMDL
Trigger: CAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCT...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTGATAGAGACGGATGCTaGTATAATTGCGTGAAGTTG +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVDRDGC*YNCVKL
Trigger: CAACTTCACGCAATTATAGCAGCATCCGTCTCTATC...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCGATAGAGACGGATGCTaGTATAATTGCGTGAAGTTG +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPDRDGC*YNCVKL
Trigger: CAACTTCACGCAATTATAGCAGCATCCGTCTCTATC...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTAGGGTGTTGTGGTCATaGATGGTATACTCTCTCTTG +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLRVLWS*MVYSLL
Trigger: CAAGAGAGAGTATACCATGCATGACCACAACACCCT...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATATCTTCGCGTCCTCCTaGAGTTTCTTCAGCTTGCCC +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDIFASS*SFFSLP
Trigger: GGGCAAGCTGAAGAAACTGCAGGAGGACGCGAAGAT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTATAAGAGCTTGTTCCTaGTTTTTCCTCAGCTCATTT +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETIRACS*FFLSSF
Trigger: AAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTTAT...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATCCATCAGGGCTTCTTaGTCTAGCAGTTTTTCCATA +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSSIRAS*SSSFSI
Trigger: TATGGAAAAACTGCTAGAGCAAGAAGCCCTGATGGA...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCTCCATCAGGGCTTCTTaGTCTAGCAGTTTTTCCATA +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLISIRAS*SSSFSI
Trigger: TATGGAAAAACTGCTAGAGCAAGAAGCCCTGATGGA...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATGGAGACTTTGCATCCTaGTGCTCCATCAGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDGDFAS*CSIRAS
Trigger: AGAAGCCCTGATGGAGCAGCAGGATGCAAAGTCTCC...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGCAGGGTTCTTCTGCTTaGCAAAGTATTATATCGAAG +
Preference number: 4 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEQGSSA*QSIISK
Trigger: CTTCGATATAATACTTTGCCAAGCAGAAGAACCCTG...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGCAGGGTTCTTCTGCTTaGCAAAGTATTATATCGAAG +
Preference number: 4 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLQGSSA*QSIISK
Trigger: CTTCGATATAATACTTTGCCAAGCAGAAGAACCCTG...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTCAAGAGCTTTTGTTCTaGGATTTTTGTTGTTCAGAC +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASCLYFAETQELLF*DFCCSD
Trigger: GTCTGAACAACAAAAATCCCAGAACAAAAGCTCTTG...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTGAAGAAAGATCAATaGCAGGACCTTGGGCTTTTG +
Preference number: 4 (lower is better)
Translates to: MKVVSSHIVISAPLTERRLKKDQ*QDLGLL
Trigger: CAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAA...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTGGTATACTCTCTCTTaGTTAAATCCATCCCCCTCT +
Preference number: 4 (lower is better)
Translates to: LESISSVVKAGMAVSWTPWYTLS*LNPSPS
Trigger: AGAGGGGGATGGATTTAACCAAGAGAGAGTATACCA...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTATTCAGCAGGGTGTTGTaGTCATGCATGGTATACTCT +
Preference number: 4 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLFSRVL*SCMVYS
Trigger: AGAGTATACCATGCATGACCACAACACCCTGCTGAA...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGAGGGTGGAGTTGTCTTaGGATTTTCGCCAAAATATT +
Preference number: 4 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPRVELS*DFRQNI
Trigger: AATATTTTGGCGAAAATCCCAAGACAACTCCACCCT...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
3UTR CAA 72 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTaGTACTTTGCTGAGACTAAAGAAGGATGTAATTGT +
Preference number: 4 (lower is better)
Translates to: RMTWSGTAVASC*YFAETKEGCNC
Trigger: ACAATTACATCCTTCTTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTCACATGATACAAACGTaGACATCATCCTTCTTACTC +
Preference number: 4 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVHMIQT*TSSFLL
Trigger: GAGTAAGAAGGATGATGTTCACGTTTGTATCATGTG...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGTGGCTCGTAAACACATaGTACAAACGTGAACATCAT +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQWLVNT*YKREHH
Trigger: ATGATGTTCACGTTTGTATCATGTGTTTACGAGCCA...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTAGCTTTTCAGACAAATaGGAGATGTTTTCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVSFSDK*EMFSSS
Trigger: GCTGGAAGAAAACATCTCTCATTTGTCTGAAAAGCT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAAGGGTAGACTGTCTTTaGATGGCTTCTTCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLRVDCL*MASSFS
Trigger: AGAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCT...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATACAGCCGAAGCACTTTaGCCTCATTCTCAGTTGGCA +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDTAEAL*PHSQLA
Trigger: TGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTATCTTCTTGAGCTTTTaGGATGACTTGATAGAGACG +
Preference number: 4 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVIFLSF*DDLIET
Trigger: CGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAGAT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGAATGGTATTCTTCAGTaGGAACAGGTTCGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: MKVVSSHIVISAPLTERRNGILQ*EQVRRK
Trigger: TTTTCTGCGAACCTGTTCTCACTGAAGAATACCATT...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAATGATGGTCATCTTCTaGAGCAGCCGCTCAATCTTA +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIEMMVIF*SSRSIL
Trigger: TAAGATTGAGCGGCTGCTGCAGAAGATGACCATCAT...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTAGACTGCTCCTCGTTTaGTGCTATTCATATAGTTTC +
Preference number: 4 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVRLLLV*CYSYSF
Trigger: GAAACTATATGAATAGCAGCAAACGAGGAGCAGTCT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGTTTAAATCCATAGACTaGTCCTCGTTTGCTGCTATT +
Preference number: 4 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPFKSID*SSFAAI
Trigger: AATAGCAGCAAACGAGGAGCAGTCTATGGATTTAAA...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp ACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAACTCATTTTCCTCTTCTaGTTGCTTGTAGGCTTTCAC +
Preference number: 4 (lower is better)
Translates to: THPLFTDYQEIRVGHNGQLIFLF*LLVGFH
Trigger: GTGAAAGCCTACAAGCAAGCAGAAGAGGAAAATGAG...TTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GATACCCATAGCACACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGTCCATCAGGGCTTCTTaGTCTAGCAGTTTTTCCATA +
Preference number: 4 (lower is better)
Translates to: DTHSTHIRYLQITRKSGWSIRAS*SSSFSI
Trigger: TATGGAAAAACTGCTAGAGCAAGAAGCCCTGATGGA...CCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATATGGGAAGGAGACTTTaGATCCTGCTGCTCCATCAG +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDMGRRL*ILLLHQ
Trigger: CTGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCAT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGATTAACTCTTGCTGCTaGCTCTTTGATTTATGGGAA +
Preference number: 4 (lower is better)
Translates to: EGCNCMPASISRFQSLVRINSCC*LFDLWE
Trigger: TTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAAT...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAAGCAATTAACTCTTGCTaGTGCCTCTTTGATTTATGG +
Preference number: 4 (lower is better)
Translates to: MTWSGTAVASCLYFAETKAINSC*CLFDLW
Trigger: CCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGC...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCTCCGCAATTAACTCTTaGTGCTGCCTCTTTGATTTA +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLISAINS*CCLFDL
Trigger: TAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGA...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCCAGGGTTCTTCTGCTTaGCAAAGTATTATATCGAAG +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIQGSSA*QSIISK
Trigger: CTTCGATATAATACTTTGCCAAGCAGAAGAACCCTG...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCACAGGGTTCTTCTGCTTaGCAAAGTATTATATCGAAG +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSQGSSA*QSIISK
Trigger: CTTCGATATAATACTTTGCCAAGCAGAAGAACCCTG...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GATACCCATAGCACACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGTTGAAGAAAGATCAATaGCAGGACCTTGGGCTTTTG +
Preference number: 4 (lower is better)
Translates to: DTHSTHIRYLQITRKSGWLKKDQ*QDLGLL
Trigger: CAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAA...CCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTGTTGTGGTCATGCATaGTATACTCTCTCTTGGTTA +
Preference number: 4 (lower is better)
Translates to: MKVVSSHIVISAPLTERRCCGHA*YTLSWL
Trigger: TAACCAAGAGAGAGTATACCATGCATGACCACAACA...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAATTCAGCAGGGTGTTGTaGTCATGCATGGTATACTCT +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIEFSRVL*SCMVYS
Trigger: AGAGTATACCATGCATGACCACAACACCCTGCTGAA...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTAGGGTGGAGTTGTCTTaGGATTTTCGCCAAAATATT +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVRVELS*DFRQNI
Trigger: AATATTTTGGCGAAAATCCCAAGACAACTCCACCCT...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGTTTCAAAGTCAAAAGTaGCTGCATACTGTGCAAAAG +
Preference number: 4 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQFQSQK*LHTVQK
Trigger: CTTTTGCACAGTATGCAGTCACTTTTGACTTTGAAA...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTTTTCAAAGTCAAAAGTaGCTGCATACTGTGCAAAAG +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVFQSQK*LHTVQK
Trigger: CTTTTGCACAGTATGCAGTCACTTTTGACTTTGAAA...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAACACATGATACAAACGTaGACATCATCCTTCTTACTC +
Preference number: 4 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEHMIQT*TSSFLL
Trigger: GAGTAAGAAGGATGATGTTCACGTTTGTATCATGTG...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTACACATGATACAAACGTaGACATCATCCTTCTTACTC +
Preference number: 4 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLHMIQT*TSSFLL
Trigger: GAGTAAGAAGGATGATGTTCACGTTTGTATCATGTG...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGGCTCGTAAACACATaGTACAAACGTGAACATCAT +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLWLVNT*YKREHH
Trigger: ATGATGTTCACGTTTGTATCATGTGTTTACGAGCCA...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCACCAGGCCTAATTTGGTaGATTCATATTGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSPGLIW*IHIVDE
Trigger: TTCATCTACAATATGAATTCACCAAATTAGGCCTGG...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAACCATCCCCTTTCTTCTaGATTTTAATGGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIEPSPFF*ILMVPC
Trigger: ACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGG...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCTATTTTCTGCTTGCTTaGAGAAAGATCAATGGCAGG +
Preference number: 4 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIYFLLA*RKINGR
Trigger: CCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATA...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTATATTTTCTGCTTGCTTaGAGAAAGATCAATGGCAGG +
Preference number: 4 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLYFLLA*RKINGR
Trigger: CCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATA...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAGACAAGACAAACGGCTaGCAACAGCTCCAAGACAAG +
Preference number: 4 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGDKTNG*QQLQDK
Trigger: CTTGTCTTGGAGCTGTTGGCAGCCGTTTGTCTTGTC...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCGATAAAATTATTTCATaGCCGCCTCTGACAAGACAA +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIDKIIS*PPLTRQ
Trigger: TTGTCTTGTCAGAGGCGGGCATGAAATAATTTTATC...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTATTAACTCTTGCTGCTaGCTCTTTGATTTATGGGAA +
Preference number: 4 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVINSCC*LFDLWE
Trigger: TTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAAT...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAAGCAATTAACTCTTGCTaGTGCCTCTTTGATTTATGG +
Preference number: 4 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEAINSC*CLFDLW
Trigger: CCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGC...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTCCACCGTACTCTCCATaGTACTTTCCACACTTTCAA +
Preference number: 4 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSPPYSP*YFPHFQ
Trigger: TTGAAAGTGTGGAAAGTACCATGGAGAGTACGGTGG...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCCAAGAGCTTTTGTTCTaGGATTTTTGTTGTTCAGAC +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIQELLF*DFCCSD
Trigger: GTCTGAACAACAAAAATCCCAGAACAAAAGCTCTTG...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp CCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAAAATTGAAGAAAGATCAATaGCAGGACCTTGGGCTTTTG +
Preference number: 4 (lower is better)
Translates to: PLFTDYQEIRVGHNGQSKLKKDQ*QDLGLL
Trigger: CAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAA...TTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCATGTTGTGGTCATGCATaGTATACTCTCTCTTGGTTA +
Preference number: 4 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLACCGHA*YTLSWL
Trigger: TAACCAAGAGAGAGTATACCATGCATGACCACAACA...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTGAAGAACACGGAGGGTaGAGTTGTCTTGGGATTTTC +
Preference number: 4 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVEEHGG*SCLGIF
Trigger: GAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTC...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCATTTCAAAGTCAAAAGTaGCTGCATACTGTGCAAAAG +
Preference number: 4 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLAFQSQK*LHTVQK
Trigger: CTTTTGCACAGTATGCAGTCACTTTTGACTTTGAAA...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAACCAGGCCTAATTTGGTaGATTCATATTGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEPGLIW*IHIVDE
Trigger: TTCATCTACAATATGAATTCACCAAATTAGGCCTGG...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCCCATCCCCTTTCTTCTaGATTTTAATGGTCCCTTGT +
Preference number: 4 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSPSPFF*ILMVPC
Trigger: ACAAGGGACCATTAAAATTCAGAAGAAAGGGGATGG...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATTTCTCATTGTCATACTaGCGCAGTAGCCTGGCTTTG +
Preference number: 4 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNFSLSY*RSSLAL
Trigger: CAAAGCCAGGCTACTGCGGCAGTATGACAATGAGAA...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCAAAGTCAAAAGTGACTaGATACTGTGCAAAAGACAA +
Preference number: 4 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIKVKSD*ILCKRQ
Trigger: TTGTCTTTTGCACAGTATGCAGTCACTTTTGACTTT...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp GATACCCATAGCACACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGATAAAATTATTTCATaGCCGCCTCTGACAAGACAA +
Preference number: 4 (lower is better)
Translates to: DTHSTHIRYLQITRKSGWDKIIS*PPLTRQ
Trigger: TTGTCTTGTCAGAGGCGGGCATGAAATAATTTTATC...CCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCTTCCTCTGCATAAGTTaGTTTTCCAGTTCCACGATC +
Preference number: 4 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSFLCIS*FSSSTI
Trigger: GATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAA...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATAGACTGCTCCTCGTTTaGTGCTATTCATATAGTTTC +
Preference number: 4 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINRLLLV*CYSYSF
Trigger: GAAACTATATGAATAGCAGCAAACGAGGAGCAGTCT...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCTTTAAATCCATAGACTaGTCCTCGTTTGCTGCTATT +
Preference number: 4 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIFKSID*SSFAAI
Trigger: AATAGCAGCAAACGAGGAGCAGTCTATGGATTTAAA...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCATAAGAGCTTGTTCCTaGTTTTTCCTCAGCTCATTT +
Preference number: 4 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIIRACS*FFLSSF
Trigger: AAATGAGCTGAGGAAAAAGCAGGAACAAGCTCTTAT...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGATGGGAAGGAGACTTTaGATCCTGCTGCTCCATCAG +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMMGRRL*ILLLHQ
Trigger: CTGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCAT...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAAATTAACTCTTGCTGCTaGCTCTTTGATTTATGGGAA +
Preference number: 4 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEINSCC*LFDLWE
Trigger: TTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAAT...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATTGTTGTGGTCATGCATaGTATACTCTCTCTTGGTTA +
Preference number: 4 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINCCGHA*YTLSWL
Trigger: TAACCAAGAGAGAGTATACCATGCATGACCACAACA...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCTGGCTCGTAAACACATaGTACAAACGTGAACATCAT +
Preference number: 4 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSWLVNT*YKREHH
Trigger: ATGATGTTCACGTTTGTATCATGTGTTTACGAGCCA...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATCCAGGCCTAATTTGGTaGATTCATATTGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINPGLIW*IHIVDE
Trigger: TTCATCTACAATATGAATTCACCAAATTAGGCCTGG...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGATAAAATTATTTCATaGCCGCCTCTGACAAGACAA +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIEDKIIS*PPLTRQ
Trigger: TTGTCTTGTCAGAGGCGGGCATGAAATAATTTTATC...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR GCA 90 bp CCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAAAAATTAACTCTTGCTGCTaGCTCTTTGATTTATGGGAA +
Preference number: 4 (lower is better)
Translates to: PLFTDYQEIRVGHNGQSKINSCC*LFDLWE
Trigger: TTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAAT...TTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCTCCGCAATTAACTCTTaGTGCTGCCTCTTTGATTTA +
Preference number: 4 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSSAINS*CCLFDL
Trigger: TAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGA...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATTTGAAGAAAGATCAATaGCAGGACCTTGGGCTTTTG +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDLKKDQ*QDLGLL
Trigger: CAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAA...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTCTTTCCTTAAAGTTATaGCAAGATTTTTGGCTCGAT +
Preference number: 4 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLLSLKL*QDFWLD
Trigger: ATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAG...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAACTTTCCTTAAAGTTATaGCAAGATTTTTGGCTCGAT +
Preference number: 4 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHELSLKL*QDFWLD
Trigger: ATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAG...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR TCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATACTTGTGTAGATTCTTaGACACGCCTTCTGAATTTC +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDTCVDS*TRLLNF
Trigger: GAAATTCAGAAGGCGTGTTCAAGAATCTACACAAGT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCTTTCAAAGTCAAAAGTaGCTGCATACTGTGCAAAAG +
Preference number: 4 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSFQSQK*LHTVQK
Trigger: CTTTTGCACAGTATGCAGTCACTTTTGACTTTGAAA...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATAGCTTTTCAGACAAATaGGAGATGTTTTCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDSFSDK*EMFSSS
Trigger: GCTGGAAGAAAACATCTCTCATTTGTCTGAAAAGCT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAGGGTAGACTGTCTTTaGATGGCTTCTTCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGRVDCL*MASSFS
Trigger: AGAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCT...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATTTCCTCTGCATAAGTTaGTTTTCCAGTTCCACGATC +
Preference number: 4 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNFLCIS*FSSSTI
Trigger: GATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAA...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATAGACTGCTCCTCGTTTaGTGCTATTCATATAGTTTC +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDRLLLV*CYSYSF
Trigger: GAAACTATATGAATAGCAGCAAACGAGGAGCAGTCT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATCTCATTTTCCTCTTCTaGTTGCTTGTAGGCTTTCAC +
Preference number: 4 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNLIFLF*LLVGFH
Trigger: GTGAAAGCCTACAAGCAAGCAGAAGAGGAAAATGAG...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATTCCATCAGGGCTTCTTaGTCTAGCAGTTTTTCCATA +
Preference number: 4 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNSIRAS*SSSFSI
Trigger: TATGGAAAAACTGCTAGAGCAAGAAGCCCTGATGGA...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTCAAGAGCTTTTGTTCTaGGATTTTTGTTGTTCAGAC +
Preference number: 4 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSQELLF*DFCCSD
Trigger: GTCTGAACAACAAAAATCCCAGAACAAAAGCTCTTG...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAACTTTCCTTAAAGTTATaGCAAGATTTTTGGCTCGAT +
Preference number: 4 (lower is better)
Translates to: QSHCYFGTINRTQVLIIELSLKL*QDFWLD
Trigger: ATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAG...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CCA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATAGGGTGGAGTTGTCTTaGGATTTTCGCCAAAATATT +
Preference number: 4 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDRVELS*DFRQNI
Trigger: AATATTTTGGCGAAAATCCCAAGACAACTCCACCCT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
3UTR CAA 72 bp AGACAGACAGAAGAATATGCCAACATTATTGTCCATTaGTACACTGGGAAATGGGCAGTTTGCTTTAAGCAA +
Preference number: 4 (lower is better)
Translates to: RQTEEYANIIVH*YTGKWAVCFKQ
Trigger: TTGCTTAAAGCAAACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTCCAGGCCTAATTTGGTaGATTCATATTGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVPGLIW*IHIVDE
Trigger: TTCATCTACAATATGAATTCACCAAATTAGGCCTGG...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAGCTTTTCAGACAAATaGGAGATGTTTTCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGSFSDK*EMFSSS
Trigger: GCTGGAAGAAAACATCTCTCATTTGTCTGAAAAGCT...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGTTCCTCTGCATAAGTTaGTTTTCCAGTTCCACGATC +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMFLCIS*FSSSTI
Trigger: GATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAA...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATGCAATTAACTCTTGCTaGTGCCTCTTTGATTTATGG +
Preference number: 4 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNAINSC*CLFDLW
Trigger: CCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGC...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATTCCGCAATTAACTCTTaGTGCTGCCTCTTTGATTTA +
Preference number: 4 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNSAINS*CCLFDL
Trigger: TAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGA...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTCTTTCCTTAAAGTTATaGCAAGATTTTTGGCTCGAT +
Preference number: 4 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSLSLKL*QDFWLD
Trigger: ATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAG...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAGGGTGGAGTTGTCTTaGGATTTTCGCCAAAATATT +
Preference number: 4 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGRVELS*DFRQNI
Trigger: AATATTTTGGCGAAAATCCCAAGACAACTCCACCCT...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR TCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGATCTTCTTGAGCTTTTaGGATGACTTGATAGAGACG +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMIFLSF*DDLIET
Trigger: CGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAGAT...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTAAAGTCAAAAGTGACTaGATACTGTGCAAAAGACAA +
Preference number: 4 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVKVKSD*ILCKRQ
Trigger: TTGTCTTTTGCACAGTATGCAGTCACTTTTGACTTT...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGGCAATTAACTCTTGCTaGTGCCTCTTTGATTTATGG +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMAINSC*CLFDLW
Trigger: CCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGC...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGTGTTGTGGTCATGCATaGTATACTCTCTCTTGGTTA +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMCCGHA*YTLSWL
Trigger: TAACCAAGAGAGAGTATACCATGCATGACCACAACA...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGTTTAAATCCATAGACTaGTCCTCGTTTGCTGCTATT +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMFKSID*SSFAAI
Trigger: AATAGCAGCAAACGAGGAGCAGTCTATGGATTTAAA...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGCAAGAGCTTTTGTTCTaGGATTTTTGTTGTTCAGAC +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMQELLF*DFCCSD
Trigger: GTCTGAACAACAAAAATCCCAGAACAAAAGCTCTTG...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR GCA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGAAAGTCAAAAGTGACTaGATACTGTGCAAAAGACAA +
Preference number: 4 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMKVKSD*ILCKRQ
Trigger: TTGTCTTTTGCACAGTATGCAGTCACTTTTGACTTT...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS GCA 90 bp TCCAGTTCACCTGGCTCGGGCATCGGCAGCTTCAATGGCACGTTGTaGGCCTTGAAATCGGTCTGCTGCGAGTCCATGCTCCCCGCGTTG +
Preference number: 5 (lower is better)
Translates to: SSSPGSGIGSFNGTL*ALKSVCCESMLPAL
Trigger: CAACGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCGAGCCAGGTGAACTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp CGGGACACACTGTTGCCCACAGGTGAGGGCAGGTTGCTCCCTCTGTaGAGGTCCTCGATGGACCTGCTCCAGGGCTTTGATTTGTCCACC +
Preference number: 5 (lower is better)
Translates to: RDTLLPTGEGRLLPL*RSSMDLLQGFDLST
Trigger: GGTGGACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGGGCACGTTGTGCGCCTaGAAATCGGTCTGCTGCGAG +
Preference number: 5 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGGTLCA*KSVCCE
Trigger: CTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCC...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp CAGGTGAGGGCAGGTTGCTCCCTCTGTGCAGGTCCTCGATGGACCTaGTCCAGGGCTTTGATTTGTCCACCGTACTCTCCATGGTACTTT +
Preference number: 5 (lower is better)
Translates to: QVRAGCSLCAGPRWT*SRALICPPYSPWYF
Trigger: AAAGTACCATGGAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 90 bp GTTCATAGCATTCAGCACGATGGCAAAGCGCTCCTCCAGTTCACCTaGCTCGGGCATCGGCAGCTTCAATGGCACGTTGTGCGCCTTGAA +
Preference number: 5 (lower is better)
Translates to: VHSIQHDGKALLQFT*LGHRQLQWHVVRLE
Trigger: TTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCGAGCCAGGTGAACTGGAGGAGCGCTTTGCCATCGTGCTGAATGCTATGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTACACGGAGGGTGGAGTaGTCTTGGGATTTTCGCCAA +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCTRRVE*SWDFRQ
Trigger: TTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGT...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp TATTATATCGAAGTGCAGAATGTCTTCCAGAGCGGGACACACTGTTaGCCACAGGTGAGGGCAGGTTGCTCCCTCTGTGCAGGTCCTCGA +
Preference number: 5 (lower is better)
Translates to: YYIEVQNVFQSGTHC*PQVRAGCSLCAGPR
Trigger: TCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCTCTGGAAGACATTCTGCACTTCGATATAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGATCTGTACTTGCAGCTaGTCGCTCTCTGTGTGTTTC +
Preference number: 5 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRICTCS*SLSVCF
Trigger: GAAACACACAGAGAGCGACAAGCTGCAAGTACAGAT...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGCCTGAATCTGTACTaGCAGCTTGTCGCTCTCTGT +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCSLNLY*QLVALC
Trigger: ACAGAGAGCGACAAGCTGCAAGTACAGATTCAGGCT...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTTCCAAGGCAGCATTCTaGGTTTCTGCGTCTTCCAAC +
Preference number: 5 (lower is better)
Translates to: VLIIEAPSHTSSHRIGSSSKAAF*VSASSN
Trigger: GTTGGAAGACGCAGAAACCAAGAATGCTGCCTTGGA...AGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTTACAGCCGAAGCACTTaGACCTCATTCTCAGTTGGC +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCYSRST*TSFSVG
Trigger: GCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTA...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp AGGCATCCTGAGCAATCTTCGCGTCCTCCTGCAGTTTCTTCAGCTTaGCCTCGTTGTGAAGGAGGAACTCTTTCAGCAGGGTGTTGTGGT +
Preference number: 5 (lower is better)
Translates to: RHPEQSSRPPAVSSA*PRCEGGTLSAGCCG
Trigger: ACCACAACACCCTGCTGAAAGAGTTCCTCCTTCACAACGAGGGCAAGCTGAAGAAACTGCAGGAGGACGCGAAGATTGCTCAGGATGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGGGCACGTTGTGCGCCTaGAAATCGGTCTGCTGCGAG +
Preference number: 5 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEGTLCA*KSVCCE
Trigger: CTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCC...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAAACAGGTGAGGGCAGGTaGCTCCCTCTGTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: MTWSGTAVASCLYFAETKTGEGR*LPLCRS
Trigger: GGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGT...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCAACAGGTGAGGGCAGGTaGCTCCCTCTGTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSTGEGR*LPLCRS
Trigger: GGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGT...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCACAGGTGAGGGCAGGTaGCTCCCTCTGTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: LESISSVVKAGMAVSWTPTGEGR*LPLCRS
Trigger: GGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGT...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGTCTCCGCAGACCTCCTaGAAGTTATCAAAAGCTGAT +
Preference number: 5 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRSPQTS*KLSKAD
Trigger: ATCAGCTTTTGATAACTTCAAGGAGGTCTGCGGAGA...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTTCTTTCAGCAGGGTGTaGTGGTCATGCATGGTATAC +
Preference number: 5 (lower is better)
Translates to: VLIIEAPSHTSSHRIGSSSFSRV*WSCMVY
Trigger: GTATACCATGCATGACCACAACACCCTGCTGAAAGA...AGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCGAGGGTGGAGTTGTCTaGGGATTTTCGCCAAAATAT +
Preference number: 5 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFEGGVV*GFSPKY
Trigger: ATATTTTGGCGAAAATCCCAAGACAACTCCACCCTC...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTCTTGCTGCTGCCTCTTaGATTTATGGGAAGGAGACT +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCLAAAS*IYGKET
Trigger: AGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAG...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCAAACCGAGAGCCACGCTaGGCGGTGCGAGCGGTAAAG +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSNREPR*AVRAVK
Trigger: CTTTACCGCTCGCACCGCCAAGCGTGGCTCTCGGTT...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155586.9
CDS TCA 90 bp GCAATCTTCGCGTCCTCCTGCAGTTTCTTCAGCTTGCCCTCGTTGTaGAGGAGGAACTCTTTCAGCAGGGTGTTGTGGTCATGCATGGTA +
Preference number: 5 (lower is better)
Translates to: AIFASSCSFFSLPSL*RRNSFSRVLWSCMV
Trigger: TACCATGCATGACCACAACACCCTGCTGAAAGAGTTCCTCCTTCACAACGAGGGCAAGCTGAAGAAACTGCAGGAGGACGCGAAGATTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAAGGCACGTTGTGCGCCTaGAAATCGGTCTGCTGCGAG +
Preference number: 5 (lower is better)
Translates to: MTWSGTAVASCLYFAETKGTLCA*KSVCCE
Trigger: CTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCC...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GATACCCATAGCACACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGACAGGTGAGGGCAGGTaGCTCCCTCTGTGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: DTHSTHIRYLQITRKSGWTGEGR*LPLCRS
Trigger: GGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGT...CCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGATTCCTCTGCATAAGTaGCTTTTCCAGTTCCACGAT +
Preference number: 5 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGIPLHK*LFQFHD
Trigger: ATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAAT...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTATAATTGCGTGAAGTaGAGGAGTCAGCATCTGAAT +
Preference number: 5 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGYNCVK*RSQHLN
Trigger: ATTCAGATGCTGACTCCTCAACTTCACGCAATTATA...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTCGGTCTGTCGACTTaGTATCTAAGAGCAGATCTA +
Preference number: 5 (lower is better)
Translates to: IIEAPSHTSSHRIGSSVGFGLST*YLRADL
Trigger: TAGATCTGCTCTTAGATACAAAGTCGACAGACCGAA...CCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTATGGTATACTCTCTCTaGGTTAAATCCATCCCCCTC +
Preference number: 5 (lower is better)
Translates to: VLIIEAPSHTSSHRIGSSMVYSL*VKSIPL
Trigger: GAGGGGGATGGATTTAACCAAGAGAGAGTATACCAT...AGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp GCCATGATGGTCATCTTCTGCAGCAGCCGCTCAATCTTACTGAACTaGATCATGAAACGGTCCTCGTCTGACAAGTTCTCCAAGGGCTTC +
Preference number: 5 (lower is better)
Translates to: AMMVIFCSSRSILLN*IMKRSSSDKFSKGF
Trigger: GAAGCCCTTGGAGAACTTGTCAGACGAGGACCGTTTCATGATGCAGTTCAGTAAGATTGAGCGGCTGCTGCAGAAGATGACCATCATGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTCGCAGTAGCCTGGCTTaGTCAGGAGGTAGGTTCATA +
Preference number: 5 (lower is better)
Translates to: RMTWSGTAVASCLYFAETRSSLA*SGGRFI
Trigger: TATGAACCTACCTCCTGACAAAGCCAGGCTACTGCG...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCACCCATCCAATGTGGTaGGTTCTTAATGAAATTTCC +
Preference number: 5 (lower is better)
Translates to: AGSDHRSAVSHFVSPHRLTHPMW*VLNEIS
Trigger: GGAAATTTCATTAAGAACCAACCACATTGGATGGGT...GAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTCTCCAGGGCTTTGATTaGTCCACCGTACTCTCCATG +
Preference number: 5 (lower is better)
Translates to: RMTWSGTAVASCLYFAETLQGFD*STVLSM
Trigger: CATGGAGAGTACGGTGGACAAATCAAAGCCCTGGAG...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTCTCAGGGTTCTTCTGCTaGGCAAAGTATTATATCGAA +
Preference number: 5 (lower is better)
Translates to: SAVSHFVSPHRLVCRVGFSGFFC*AKYYIE
Trigger: TTCGATATAATACTTTGCCAAGCAGAAGAACCCTGA...GAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGTCAGGGTTCTTCTGCTaGGCAAAGTATTATATCGAA +
Preference number: 5 (lower is better)
Translates to: DHRSAVSHFVSPHRLVCRSGFFC*AKYYIE
Trigger: TTCGATATAATACTTTGCCAAGCAGAAGAACCCTGA...CCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTTGGTTTTGTTCTGGGATTTTaGTTGTTCAGACTTAGTGCA +
Preference number: 5 (lower is better)
Translates to: RSAVSHFVSPHRLVCRVGFVLGF*LFRLSA
Trigger: TGCACTAAGTCTGAACAACAAAAATCCCAGAACAAA...ACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTGAACTTGGGTATTaGCATCTTTGTAGATTTCCC +
Preference number: 5 (lower is better)
Translates to: GSDHRSAVSHFVSPHRLVCELGY*HLCRFP
Trigger: GGGAAATCTACAAAGATGCAAATACCCAAGTTCACA...GACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 90 bp CGTTGTGAAGGAGGAACTCTTTCAGCAGGGTGTTGTGGTCATGCATaGTATACTCTCTCTTGGTTAAATCCATCCCCCTCTGCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: RCEGGTLSAGCCGHA*YTLSWLNPSPSAAP
Trigger: AGGAGCTGCAGAGGGGGATGGATTTAACCAAGAGAGAGTATACCATGCATGACCACAACACCCTGCTGAAAGAGTTCCTCCTTCACAACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGAGCTTCAATGGCACGTaGTGCGCCTTGAAATCGGTC +
Preference number: 5 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPSFNGT*CALKSV
Trigger: GACCGATTTCAAGGCGCACAACGTGCCATTGAAGCT...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGCTCCAGGGCTTTGATTaGTCCACCGTACTCTCCATG +
Preference number: 5 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLLQGFD*STVLSM
Trigger: CATGGAGAGTACGGTGGACAAATCAAAGCCCTGGAG...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGACCTGCTCCAGGGCTTaGATTTGTCCACCGTACTCT +
Preference number: 5 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLTCSRA*ICPPYS
Trigger: AGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGT...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTCCAAGACAAGAGCTTTaGTTCTGGGATTTTTGTTGT +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCPRQEL*FWDFCC
Trigger: ACAACAAAAATCCCAGAACAAAAGCTCTTGTCTTGG...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGTCCAGTTCCACGATCTaGGACATGGCTTCGTTCTCC +
Preference number: 5 (lower is better)
Translates to: NRMTWSGTAVASCLYFAESSSTI*DMASFS
Trigger: GGAGAACGAAGCCATGTCCAAGATCGTGGAACTGGA...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCCCTTGGGCTTTTGTCTaGAATATTTCTTCAAATTCG +
Preference number: 5 (lower is better)
Translates to: AGSDHRSAVSHFVSPHRLPWAFV*NISSNS
Trigger: CGAATTTGAAGAAATATTCAAGACAAAAGCCCAAGG...GAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTTATAATTGCGTGAAGTaGAGGAGTCAGCATCTGAAT +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCYNCVK*RSQHLN
Trigger: ATTCAGATGCTGACTCCTCAACTTCACGCAATTATA...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGGGCTCGTCTGTAGGGTaGGTTTCTAAGATCCTCGAG +
Preference number: 5 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPGSSVG*VSKILE
Trigger: CTCGAGGATCTTAGAAACCAACCCTACAGACGAGCC...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049483.14
CDS GCA 90 bp ATGCTCTCTGTGAAGTTCCCAATGAAGGCCATGATGGTCATCTTCTaGAGCAGCCGCTCAATCTTACTGAACTGCATCATGAAACGGTCC +
Preference number: 5 (lower is better)
Translates to: MLSVKFPMKAMMVIF*SSRSILLNCIMKRS
Trigger: GGACCGTTTCATGATGCAGTTCAGTAAGATTGAGCGGCTGCTGCAGAAGATGACCATCATGGCCTTCATTGGGAACTTCACAGAGAGCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTACCTGCTCCAGGGCTTaGATTTGTCCACCGTACTCT +
Preference number: 5 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVTCSRA*ICPPYS
Trigger: AGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATCCAGTTCCACGATCTaGGACATGGCTTCGTTCTCC +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSSSSTI*DMASFS
Trigger: GGAGAACGAAGCCATGTCCAAGATCGTGGAACTGGA...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTAATTTTAATGGTCCCTaGTTTCTCCAGTTCGTGAAT +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCNFNGP*FLQFVN
Trigger: ATTCACGAACTGGAGAAACAAGGGACCATTAAAATT...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCGCATCGGCTCGTCTGTGTTATGGCAAGATTTTaGGCTCGATTTGCTTCTAAT +
Preference number: 5 (lower is better)
Translates to: SDHRSAVSHFVSPHRLVCVMARF*ARFASN
Trigger: ATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAAC...ACAGACGAGCCGATGCGGTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGTACAGCCGAAGCACTTaGACCTCATTCTCAGTTGGC +
Preference number: 5 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPYSRST*TSFSVG
Trigger: GCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTA...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTACACGGAGGGTGGAGTaGTCTTGGGATTTTCGCCAA +
Preference number: 5 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVTRRVE*SWDFRQ
Trigger: TTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS TCA 90 bp AGTTCTCCAAGGGCTTCCTCTCTCGCTCATACAGCCGAAGCACTTTaGCCTCATTCTCAGTTGGCAAGAACCTCATCAAACACTCAACAA +
Preference number: 5 (lower is better)
Translates to: SSPRASSLAHTAEAL*PHSQLARTSSNTQQ
Trigger: TTGTTGAGTGTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTATGAGCGAGAGAGGAAGCCCTTGGAGAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTCGCAGTAGCCTGGCTTaGTCAGGAGGTAGGTTCATA +
Preference number: 5 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLRSSLA*SGGRFI
Trigger: TATGAACCTACCTCCTGACAAAGCCAGGCTACTGCG...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCACTCCAGGGCTTTGATTaGTCCACCGTACTCTCCATG +
Preference number: 5 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLALQGFD*STVLSM
Trigger: CATGGAGAGTACGGTGGACAAATCAAAGCCCTGGAG...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGATCTGTACTTGCAGCTaGTCGCTCTCTGTGTGTTTC +
Preference number: 5 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEICTCS*SLSVCF
Trigger: GAAACACACAGAGAGCGACAAGCTGCAAGTACAGAT...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TACACTGGGAAATGGGCAGTTTGCTTTAAGCAAATGCACGCCTTTGGAAAGCAGAGCCTGAATCTGTACTaGCAGCTTGTCGCTCTCTGT +
Preference number: 5 (lower is better)
Translates to: YTGKWAVCFKQMHAFGKQSLNLY*QLVALC
Trigger: ACAGAGAGCGACAAGCTGCAAGTACAGATTCAGGCT...CTGCTTTCCAAAGGCGTGCATTTGCTTAAAGCAAACTGCCCATTTCCCAGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTTACAGCCGAAGCACTTaGACCTCATTCTCAGTTGGC +
Preference number: 5 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVYSRST*TSFSVG
Trigger: GCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTA...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTATGGTATACTCTCTCTaGGTTAAATCCATCCCCCTC +
Preference number: 5 (lower is better)
Translates to: RMTWSGTAVASCLYFAETMVYSL*VKSIPL
Trigger: GAGGGGGATGGATTTAACCAAGAGAGAGTATACCAT...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGTCTTTCAGCAGGGTGTaGTGGTCATGCATGGTATAC +
Preference number: 5 (lower is better)
Translates to: NRMTWSGTAVASCLYFAESFSRV*WSCMVY
Trigger: GTATACCATGCATGACCACAACACCCTGCTGAAAGA...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAAACACGGAGGGTGGAGTaGTCTTGGGATTTTCGCCAA +
Preference number: 5 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHETRRVE*SWDFRQ
Trigger: TTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGT...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATATGGGAAGGAGACTTaGCATCCTGCTGCTCCATCA +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSYGKET*HPAAPS
Trigger: TGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCATA...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTATGGGAAGGAGACTTaGCATCCTGCTGCTCCATCA +
Preference number: 5 (lower is better)
Translates to: MKVVSSHIVISAPLTERRYGKET*HPAAPS
Trigger: TGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCATA...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGGGCTCGTCTGTAGGGTaGGTTTCTAAGATCTGTGAT +
Preference number: 5 (lower is better)
Translates to: EGCNCMPASISRFQSLVRGSSVG*VSKICD
Trigger: ATCACAGATCTTAGAAACCAACCCTACAGACGAGCC...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090952.11
CDS GCA 90 bp TTATGGGAAGGAGACTTTGCATCCTGCTGCTCCATCAGGGCTTCTTaGTCTAGCAGTTTTTCCATAAGAGCTTGTTCCTGCTTTTTCCTC +
Preference number: 5 (lower is better)
Translates to: LWEGDFASCCSIRAS*SSSFSIRACSCFFL
Trigger: GAGGAAAAAGCAGGAACAAGCTCTTATGGAAAAACTGCTAGAGCAAGAAGCCCTGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCATAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATGGCACGTTGTGCGCCTaGAAATCGGTCTGCTGCGAG +
Preference number: 5 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNGTLCA*KSVCCE
Trigger: CTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCC...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAACGCAGTAGCCTGGCTTaGTCAGGAGGTAGGTTCATA +
Preference number: 5 (lower is better)
Translates to: QSHCYFGTINRTQVLIIERSSLA*SGGRFI
Trigger: TATGAACCTACCTCCTGACAAAGCCAGGCTACTGCG...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAGCCTGAATCTGTACTaGCAGCTTGTCGCTCTCTGT +
Preference number: 5 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTISLNLY*QLVALC
Trigger: ACAGAGAGCGACAAGCTGCAAGTACAGATTCAGGCT...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GATACCCATAGCACACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGTCCAAGGCAGCATTCTaGGTTTCTGCGTCTTCCAAC +
Preference number: 5 (lower is better)
Translates to: DTHSTHIRYLQITRKSGWSKAAF*VSASSN
Trigger: GTTGGAAGACGCAGAAACCAAGAATGCTGCCTTGGA...CCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAATCCAGTTCCACGATCTaGGACATGGCTTCGTTCTCC +
Preference number: 5 (lower is better)
Translates to: QSHCYFGTINRTQVLIIESSSTI*DMASFS
Trigger: GGAGAACGAAGCCATGTCCAAGATCGTGGAACTGGA...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CTTGGACACCCTCTCATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTCGGTCTGTCGACTTaGTATCTAAGAGCAGATCTA +
Preference number: 5 (lower is better)
Translates to: LGHPLMKVVSSHIVISAPFGLST*YLRADL
Trigger: TAGATCTGCTCTTAGATACAAAGTCGACAGACCGAA...TGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGATAGTGCAACAGTGTTaGCTTTCGGTCTGTCGACTT +
Preference number: 5 (lower is better)
Translates to: HCYFGTINRTQVLIIEAPIVQQC*LSVCRL
Trigger: AAGTCGACAGACCGAAAGCAAACACTGTTGCACTAT...CGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATACACGGAGGGTGGAGTaGTCTTGGGATTTTCGCCAA +
Preference number: 5 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINTRRVE*SWDFRQ
Trigger: TTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGT...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTATATGGGAAGGAGACTTaGCATCCTGCTGCTCCATCA +
Preference number: 5 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLYGKET*HPAAPS
Trigger: TGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCATA...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTCACTTGTGTAGATTCTaGAACACGCCTTCTGAATTT +
Preference number: 5 (lower is better)
Translates to: RMTWSGTAVASCLYFAETHLCRF*NTPSEF
Trigger: AAATTCAGAAGGCGTGTTCAAGAATCTACACAAGTG...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTACCTGCTCCAGGGCTTaGATTTGTCCACCGTACTCT +
Preference number: 5 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSTCSRA*ICPPYS
Trigger: AGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGT...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CTTGGACACCCTCTCATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATCAGGGTTCTTCTGCTaGGCAAAGTATTATATCGAA +
Preference number: 5 (lower is better)
Translates to: LGHPLMKVVSSHIVISAPSGFFC*AKYYIE
Trigger: TTCGATATAATACTTTGCCAAGCAGAAGAACCCTGA...TGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCATGAGAGGGTGTCCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GATACCCATAGCACACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGATCTGTACTTGCAGCTaGTCGCTCTCTGTGTGTTTC +
Preference number: 5 (lower is better)
Translates to: DTHSTHIRYLQITRKSGWICTCS*SLSVCF
Trigger: GAAACACACAGAGAGCGACAAGCTGCAAGTACAGAT...CCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGTGTGCTATGGGTATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCATCTGTACTTGCAGCTaGTCGCTCTCTGTGTGTTTC +
Preference number: 5 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIICTCS*SLSVCF
Trigger: GAAACACACAGAGAGCGACAAGCTGCAAGTACAGAT...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGATTCCTCTGCATAAGTaGCTTTTCCAGTTCCACGAT +
Preference number: 5 (lower is better)
Translates to: EGCNCMPASISRFQSLVRIPLHK*LFQFHD
Trigger: ATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAAT...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTTGTGAACTTGGGTATTaGCATCTTTGTAGATTTCCC +
Preference number: 5 (lower is better)
Translates to: RMTWSGTAVASCLYFAETCELGY*HLCRFP
Trigger: GGGAAATCTACAAAGATGCAAATACCCAAGTTCACA...AGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCCAGGGTAGACTGTCTTaGAATGGCTTCTTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: LESISSVVKAGMAVSWTPQGRLS*NGFFLF
Trigger: GAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCTG...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCCAGGGTAGACTGTCTTaGAATGGCTTCTTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: GLQSHCYFGTINRTQVLIQGRLS*NGFFLF
Trigger: GAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCTG...GATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCGCTGCTAATCCTGAGTaGAAAACCACTGTAGGTGAA +
Preference number: 5 (lower is better)
Translates to: LESISSVVKAGMAVSWTPAANPE*KTTVGE
Trigger: TTCACCTACAGTGGTTTTCAACTCAGGATTAGCAGC...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATTACAGCCGAAGCACTTaGACCTCATTCTCAGTTGGC +
Preference number: 5 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINYSRST*TSFSVG
Trigger: GCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTA...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CTTGAGAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCATAGTGCAACAGTGTTaGCTTTCGGTCTGTCGACTT +
Preference number: 5 (lower is better)
Translates to: LESISSVVKAGMAVSWTPIVQQC*LSVCRL
Trigger: AAGTCGACAGACCGAAAGCAAACACTGTTGCACTAT...GGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTCTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTCTTGCTGCTGCCTCTTaGATTTATGGGAAGGAGACT +
Preference number: 5 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLLAAAS*IYGKET
Trigger: AGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAG...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS TCA 90 bp TCCAAGGGCCAAGATGATCTCCAGAATCTTCTTGAGCTTTTGAGATaGCTTGATAGAGACGGATGCTGCTATAATTGCGTGAAGTTGAGG +
Preference number: 5 (lower is better)
Translates to: SKGQDDLQNLLELLR*LDRDGCCYNCVKLR
Trigger: CCTCAACTTCACGCAATTATAGCAGCATCCGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAGATTCTGGAGATCATCTTGGCCCTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp TCTTTAACTTGTCGCCTTCTTAATTCCGCAATTAACTCTTGCTGCTaGCTCTTTGATTTATGGGAAGGAGACTTTGCATCCTGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: SLTCRLLNSAINSCC*LFDLWEGDFASCCS
Trigger: GGAGCAGCAGGATGCAAAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGAATTAAGAAGGCGACAAGTTAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 90 bp GTAGGCTTTCACAAATCGAACAAAGACAGGGAAGAACACGGAGGGTaGAGTTGTCTTGGGATTTTCGCCAAAATATTTCACCACATCATC +
Preference number: 5 (lower is better)
Translates to: VGFHKSNKDREEHGG*SCLGIFAKIFHHII
Trigger: GATGATGTGGTGAAATATTTTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTCCCTGTCTTTGTTCGATTTGTGAAAGCCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATCGCAGTAGCCTGGCTTaGTCAGGAGGTAGGTTCATA +
Preference number: 5 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDRSSLA*SGGRFI
Trigger: TATGAACCTACCTCCTGACAAAGCCAGGCTACTGCG...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGCACTTGTGTAGATTCTaGAACACGCCTTCTGAATTT +
Preference number: 5 (lower is better)
Translates to: NRMTWSGTAVASCLYFAEHLCRF*NTPSEF
Trigger: AAATTCAGAAGGCGTGTTCAAGAATCTACACAAGTG...CTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGACCCATCCAATGTGGTaGGTTCTTAATGAAATTTCC +
Preference number: 5 (lower is better)
Translates to: GGLQSHCYFGTINRTQVLTHPMW*VLNEIS
Trigger: GGAAATTTCATTAAGAACCAACCACATTGGATGGGT...CAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTCTCCAGGGCTTTGATTaGTCCACCGTACTCTCCATG +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVLQGFD*STVLSM
Trigger: CATGGAGAGTACGGTGGACAAATCAAAGCCCTGGAG...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCTCTCCGCAGACCTCCTaGAAGTTATCAAAAGCTGAT +
Preference number: 5 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTISPQTS*KLSKAD
Trigger: ATCAGCTTTTGATAACTTCAAGGAGGTCTGCGGAGA...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATTCCAGTTCCACGATCTaGGACATGGCTTCGTTCTCC +
Preference number: 5 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDSSSTI*DMASFS
Trigger: GGAGAACGAAGCCATGTCCAAGATCGTGGAACTGGA...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGAGTTATTCCTCTGCATAAGTaGCTTTTCCAGTTCCACGAT +
Preference number: 5 (lower is better)
Translates to: DVIVCQLPSPVSSPLLGVIPLHK*LFQFHD
Trigger: ATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAAT...AACTCCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTCAGGGTAGACTGTCTTaGAATGGCTTCTTCCTTTTC +
Preference number: 5 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLQGRLS*NGFFLF
Trigger: GAAAAGGAAGAAGCCATTCAAAGACAGTCTACCCTG...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAAGCTGCTAATCCTGAGTaGAAAACCACTGTAGGTGAA +
Preference number: 5 (lower is better)
Translates to: THPLFTDYQEIRVGHNGQAANPE*KTTVGE
Trigger: TTCACCTACAGTGGTTTTCAACTCAGGATTAGCAGC...TTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATCATCATCGATTTCATaGAAGACTGTGCCGTTGATC +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSSSSIS*KTVPLI
Trigger: GATCAACGGCACAGTCTTCAATGAAATCGATGATGA...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ATTAACAGAACGCAGGTTCTGATCATCGAAGCGCCGTCTCACACTTCGTCTCACCCTTGGGCTTTTGTCTaGAATATTTCTTCAAATTCG +
Preference number: 5 (lower is better)
Translates to: INRTQVLIIEAPSHTSSHPWAFV*NISSNS
Trigger: CGAATTTGAAGAAATATTCAAGACAAAAGCCCAAGG...GTGAGACGAAGTGTGAGACGGCGCTTCGATGATCAGAACCTGCGTTCTGTTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATTCGGTCTGTCGACTTaGTATCTAAGAGCAGATCTA +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSFGLST*YLRADL
Trigger: TAGATCTGCTCTTAGATACAAAGTCGACAGACCGAA...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAATAGTGCAACAGTGTTaGCTTTCGGTCTGTCGACTT +
Preference number: 5 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLIVQQC*LSVCRL
Trigger: AAGTCGACAGACCGAAAGCAAACACTGTTGCACTAT...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCATGGTATACTCTCTCTaGGTTAAATCCATCCCCCTC +
Preference number: 5 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIMVYSL*VKSIPL
Trigger: GAGGGGGATGGATTTAACCAAGAGAGAGTATACCAT...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTATGCCATCTTGAAGTCATACAAGTGAATGCCTTTGTGCATGGCAGCCTTGCAGAGGGTGGAGTTGTCTaGGGATTTTCGCCAAAATAT +
Preference number: 5 (lower is better)
Translates to: LCHLEVIQVNAFVHGSLAEGGVV*GFSPKY
Trigger: ATATTTTGGCGAAAATCCCAAGACAACTCCACCCTC...TGCAAGGCTGCCATGCACAAAGGCATTCACTTGTATGACTTCAAGATGGCATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAAGAGGGTGGAGTTGTCTaGGGATTTTCGCCAAAATAT +
Preference number: 5 (lower is better)
Translates to: THPLFTDYQEIRVGHNGQEGGVV*GFSPKY
Trigger: ATATTTTGGCGAAAATCCCAAGACAACTCCACCCTC...TTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTATGGGAAGGAGACTTaGCATCCTGCTGCTCCATCA +
Preference number: 5 (lower is better)
Translates to: DRRICQHYCPFVHWEMGSYGKET*HPAAPS
Trigger: TGATGGAGCAGCAGGATGCAAAGTCTCCTTCCCATA...ACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCACACTTGTGTAGATTCTaGAACACGCCTTCTGAATTT +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSHLCRF*NTPSEF
Trigger: AAATTCAGAAGGCGTGTTCAAGAATCTACACAAGTG...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGCTGAGACTAAAACCCATCCAATGTGGTaGGTTCTTAATGAAATTTCC +
Preference number: 5 (lower is better)
Translates to: MTWSGTAVASCLYFAETKTHPMW*VLNEIS
Trigger: GGAAATTTCATTAAGAACCAACCACATTGGATGGGT...TTTAGTCTCAGCAAAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAACCTGCTCCAGGGCTTaGATTTGTCCACCGTACTCT +
Preference number: 5 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGTCSRA*ICPPYS
Trigger: AGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGT...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGCCAAGACAAGAGCTTTaGTTCTGGGATTTTTGTTGT +
Preference number: 5 (lower is better)
Translates to: MKVVSSHIVISAPLTERRPRQEL*FWDFCC
Trigger: ACAACAAAAATCCCAGAACAAAAGCTCTTGTCTTGG...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTAGCCTGAATCTGTACTaGCAGCTTGTCGCTCTCTGT +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVSLNLY*QLVALC
Trigger: ACAGAGAGCGACAAGCTGCAAGTACAGATTCAGGCT...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTCTGATCATCGAAGCTGCTAATCCTGAGTaGAAAACCACTGTAGGTGAA +
Preference number: 5 (lower is better)
Translates to: QSHCYFGTINRTQVLIIEAANPE*KTTVGE
Trigger: TTCACCTACAGTGGTTTTCAACTCAGGATTAGCAGC...TTCGATGATCAGAACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTAGGGTTATGGCAAGATTTTaGGCTCGATTTGCTTCTAAT +
Preference number: 5 (lower is better)
Translates to: EGCNCMPASISRFQSLVRVMARF*ARFASN
Trigger: ATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAAC...CCTAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp CCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCAAAAATGGTATACTCTCTCTaGGTTAAATCCATCCCCCTC +
Preference number: 5 (lower is better)
Translates to: PLFTDYQEIRVGHNGQSKMVYSL*VKSIPL
Trigger: GAGGGGGATGGATTTAACCAAGAGAGAGTATACCAT...TTTTGATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGATTTTCCTCTTCTGCTaGCTTGTAGGCTTTCACAAA +
Preference number: 5 (lower is better)
Translates to: MKVVSSHIVISAPLTERRIFLFC*LVGFHK
Trigger: TTTGTGAAAGCCTACAAGCAAGCAGAAGAGGAAAAT...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS TCA 90 bp GTTCTTAATGAAATTTCCAGTTCTCTTAGCACTTGTGTAGATTCTTaGACACGCCTTCTGAATTTCTTCCTGGTTACAGCTGGGTCCAGG +
Preference number: 5 (lower is better)
Translates to: VLNEISSSLSTCVDS*TRLLNFFLVTAGSR
Trigger: CCTGGACCCAGCTGTAACCAGGAAGAAATTCAGAAGGCGTGTTCAAGAATCTACACAAGTGCTAAGAGAACTGGAAATTTCATTAAGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp TTATCTTTAACTTGTCGCCTTCTTAATTCCGCAATTAACTCTTGCTaGTGCCTCTTTGATTTATGGGAAGGAGACTTTGCATCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LSLTCRLLNSAINSC*CLFDLWEGDFASCC
Trigger: GCAGCAGGATGCAAAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGAATTAAGAAGGCGACAAGTTAAAGATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 90 bp CTGTTATCTTTAACTTGTCGCCTTCTTAATTCCGCAATTAACTCTTaGTGCTGCCTCTTTGATTTATGGGAAGGAGACTTTGCATCCTGC +
Preference number: 5 (lower is better)
Translates to: LLSLTCRLLNSAINS*CCLFDLWEGDFASC
Trigger: GCAGGATGCAAAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGAATTAAGAAGGCGACAAGTTAAAGATAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAACACTTGTGTAGATTCTaGAACACGCCTTCTGAATTT +
Preference number: 5 (lower is better)
Translates to: THPLFTDYQEIRVGHNGQHLCRF*NTPSEF
Trigger: AAATTCAGAAGGCGTGTTCAAGAATCTACACAAGTG...TTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATTTGTTCTGGGATTTTaGTTGTTCAGACTTAGTGCA +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSFVLGF*LFRLSA
Trigger: TGCACTAAGTCTGAACAACAAAAATCCCAGAACAAA...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCCCAAGACAAGAGCTTTaGTTCTGGGATTTTTGTTGT +
Preference number: 5 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTIPRQEL*FWDFCC
Trigger: ACAACAAAAATCCCAGAACAAAAGCTCTTGTCTTGG...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATGAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTCATCCAGGCCTAATTaGGTGAATTCATATTGTAGA +
Preference number: 5 (lower is better)
Translates to: MKVVSSHIVISAPLTERRSSRPN*VNSYCR
Trigger: TCTACAATATGAATTCACCAAATTAGGCCTGGATGA...CCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATTCCAAGGCAGCATTCTaGGTTTCTGCGTCTTCCAAC +
Preference number: 5 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNSKAAF*VSASSN
Trigger: GTTGGAAGACGCAGAAACCAAGAATGCTGCCTTGGA...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTTGTGAACTTGGGTATTaGCATCTTTGTAGATTTCCC +
Preference number: 5 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLCELGY*HLCRFP
Trigger: GGGAAATCTACAAAGATGCAAATACCCAAGTTCACA...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAATCTGTGAACTTGGGTATTaGCATCTTTGTAGATTTCCC +
Preference number: 5 (lower is better)
Translates to: TSVIYRLPGNQGGPQWTICELGY*HLCRFP
Trigger: GGGAAATCTACAAAGATGCAAATACCCAAGTTCACA...GATTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GAAGGTGGTCTCCAGTCACATTGTTATTTCGGCACCATTAACAGAACGCAGGTTAATTTTAATGGTCCCTaGTTTCTCCAGTTCGTGAAT +
Preference number: 5 (lower is better)
Translates to: EGGLQSHCYFGTINRTQVNFNGP*FLQFVN
Trigger: ATTCACGAACTGGAGAAACAAGGGACCATTAAAATT...AACCTGCGTTCTGTTAATGGTGCCGAAATAACAATGTGACTGGAGACCACCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GAGTATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCAGTTATGGCAAGATTTTaGGCTCGATTTGCTTCTAAT +
Preference number: 5 (lower is better)
Translates to: EYFICSEGWNGSFLDTLSVMARF*ARFASN
Trigger: ATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAAC...TGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAATACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAATATAATTGCGTGAAGTaGAGGAGTCAGCATCTGAAT +
Preference number: 5 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEYNCVK*RSQHLN
Trigger: ATTCAGATGCTGACTCCTCAACTTCACGCAATTATA...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTTCTTTCAGCAGGGTGTaGTGGTCATGCATGGTATAC +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVSFSRV*WSCMVY
Trigger: GTATACCATGCATGACCACAACACCCTGCTGAAAGA...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AGGATAAAATCGAATGACTTGGAGTGGCACTGCAGTTGCATCCTGCTTGTACTTATTTTCCTCTTCTGCTaGCTTGTAGGCTTTCACAAA +
Preference number: 5 (lower is better)
Translates to: RIKSNDLEWHCSCILLVLIFLFC*LVGFHK
Trigger: TTTGTGAAAGCCTACAAGCAAGCAGAAGAGGAAAAT...AAGTACAAGCAGGATGCAACTGCAGTGCCACTCCAAGTCATTCGATTTTATCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAAATTTTCCTCTTCTGCTaGCTTGTAGGCTTTCACAAA +
Preference number: 5 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEIFLFC*LVGFHK
Trigger: TTTGTGAAAGCCTACAAGCAAGCAGAAGAGGAAAAT...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTCTTGCTGCTGCCTCTTaGATTTATGGGAAGGAGACT +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVLAAAS*IYGKET
Trigger: AGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAG...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTTCTCCGCAGACCTCCTaGAAGTTATCAAAAGCTGAT +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVSPQTS*KLSKAD
Trigger: ATCAGCTTTTGATAACTTCAAGGAGGTCTGCGGAGA...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AAGAAGGATGTAATTGTATGCCAGCTTCCATCTCCCGTTTCCAGTCCCTTGTTATCATCCAGGCCTAATTaGGTGAATTCATATTGTAGA +
Preference number: 5 (lower is better)
Translates to: KKDVIVCQLPSPVSSPLLSSRPN*VNSYCR
Trigger: TCTACAATATGAATTCACCAAATTAGGCCTGGATGA...TAACAAGGGACTGGAAACGGGAGATGGAAGCTGGCATACAATTACATCCTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGTCCAAGGCAGCATTCTaGGTTTCTGCGTCTTCCAAC +
Preference number: 5 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMSKAAF*VSASSN
Trigger: GTTGGAAGACGCAGAAACCAAGAATGCTGCCTTGGA...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ATTTCATCTGTAGTGAAGGCTGGAATGGCAGTTTCTTGGACACCCTCTCATGAACCTTGGGCTTTTGTCTaGAATATTTCTTCAAATTCG +
Preference number: 5 (lower is better)
Translates to: ISSVVKAGMAVSWTPSHEPWAFV*NISSNS
Trigger: CGAATTTGAAGAAATATTCAAGACAAAAGCCCAAGG...TTCATGAGAGGGTGTCCAAGAAACTGCCATTCCAGCCTTCACTACAGATGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp ACACATCCGTTATTTACAGATTACCAGGAAATCAGGGTGGGCCACAATGGACAAGTTATGGCAAGATTTTaGGCTCGATTTGCTTCTAAT +
Preference number: 5 (lower is better)
Translates to: THPLFTDYQEIRVGHNGQVMARF*ARFASN
Trigger: ATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAAC...TTGTCCATTGTGGCCCACCCTGATTTCCTGGTAATCTGTAAATAACGGATGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTGAGGGTGGAGTTGTCTaGGGATTTTCGCCAAAATAT +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVEGGVV*GFSPKY
Trigger: ATATTTTGGCGAAAATCCCAAGACAACTCCACCCTC...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATCTTGCTGCTGCCTCTTaGATTTATGGGAAGGAGACT +
Preference number: 5 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNLAAAS*IYGKET
Trigger: AGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAG...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp GGACCCTTCGATTGTCAGAAGAGAATAAGGCCAGGTTCCCAACATTACATTAATTTTGTTCTGGGATTTTaGTTGTTCAGACTTAGTGCA +
Preference number: 5 (lower is better)
Translates to: GPFDCQKRIRPGSQHYINFVLGF*LFRLSA
Trigger: TGCACTAAGTCTGAACAACAAAAATCCCAGAACAAA...ATTAATGTAATGTTGGGAACCTGGCCTTATTCTCTTCTGACAATCGAAGGGTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTAGGAGTTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCCCAAGACAAGAGCTTTaGTTCTGGGATTTTTGTTGT +
Preference number: 5 (lower is better)
Translates to: LGVGEYGSNTKFLRRPLSPRQEL*FWDFCC
Trigger: ACAACAAAAATCCCAGAACAAAAGCTCTTGTCTTGG...GCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAACTCCTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATATTCCTCTGCATAAGTaGCTTTTCCAGTTCCACGAT +
Preference number: 5 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDIPLHK*LFQFHD
Trigger: ATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAAT...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAGCTGCTAATCCTGAGTaGAAAACCACTGTAGGTGAA +
Preference number: 5 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGAANPE*KTTVGE
Trigger: TTCACCTACAGTGGTTTTCAACTCAGGATTAGCAGC...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTTCATCATCGATTTCATaGAAGACTGTGCCGTTGATC +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVSSSIS*KTVPLI
Trigger: GATCAACGGCACAGTCTTCAATGAAATCGATGATGA...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGTCTTTCAGCAGGGTGTaGTGGTCATGCATGGTATAC +
Preference number: 5 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMSFSRV*WSCMVY
Trigger: GTATACCATGCATGACCACAACACCCTGCTGAAAGA...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS GCA 90 bp CATCATCCTTCTTACTCACTAATCTTGAATTTTTCAGGGTTCTTCTaGTTGGCAAAGTATTATATCGAAGTGCAGAATGTCTTCCAGAGC +
Preference number: 5 (lower is better)
Translates to: HHPSYSLILNFSGFF*LAKYYIEVQNVFQS
Trigger: GCTCTGGAAGACATTCTGCACTTCGATATAATACTTTGCCAAGCAGAAGAACCCTGAAAAATTCAAGATTAGTGAGTAAGAAGGATGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp GGAAATCAGGGTGGGCCACAATGGACAATCAAAATGGCAAATAATGAATTTAATTCATCATCGATTTCATaGAAGACTGTGCCGTTGATC +
Preference number: 5 (lower is better)
Translates to: GNQGGPQWTIKMANNEFNSSSIS*KTVPLI
Trigger: GATCAACGGCACAGTCTTCAATGAAATCGATGATGA...ATTAAATTCATTATTTGCCATTTTGATTGTCCATTGTGGCCCACCCTGATTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS CCA 90 bp CTTTACATATCTCATCCGCAGACTTCCCAGCTTTCCTTAAAGTTATaGCAAGATTTTTGGCTCGATTTGCTTCTAATAATGTCACTTTAC +
Preference number: 5 (lower is better)
Translates to: LYISHPQTSQLSLKL*QDFWLDLLLIMSLY
Trigger: GTAAAGTGACATTATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAGCTGGGAAGTCTGCGGATGAGATATGTAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS-3UTR CAA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAACCCATCCAATGTGGTaGGTTCTTAATGAAATTTCC +
Preference number: 5 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGTHPMW*VLNEIS
Trigger: GGAAATTTCATTAAGAACCAACCACATTGGATGGGT...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGATCAGGGTTCTTCTGCTaGGCAAAGTATTATATCGAA +
Preference number: 5 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGSGFFC*AKYYIE
Trigger: TTCGATATAATACTTTGCCAAGCAGAAGAACCCTGA...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTTCATCCAGGCCTAATTaGGTGAATTCATATTGTAGA +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVSSRPN*VNSYCR
Trigger: TCTACAATATGAATTCACCAAATTAGGCCTGGATGA...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp ACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGAAATGGGCAGTTAATTTTAATGGTCCCTaGTTTCTCCAGTTCGTGAAT +
Preference number: 5 (lower is better)
Translates to: TEEYANIIVHLYTGKWAVNFNGP*FLQFVN
Trigger: ATTCACGAACTGGAGAAACAAGGGACCATTAAAATT...AACTGCCCATTTCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTGGTGAATATGGCTCGAACACAAAATTTCTTAGAAGACCTCTCAGCAAAGGATCCTTGGGCTTTTGTCTaGAATATTTCTTCAAATTCG +
Preference number: 5 (lower is better)
Translates to: LVNMARTQNFLEDLSAKDPWAFV*NISSNS
Trigger: CGAATTTGAAGAAATATTCAAGACAAAAGCCCAAGG...ATCCTTTGCTGAGAGGTCTTCTAAGAAATTTTGTGTTCGAGCCATATTCACCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGATATAATTGCGTGAAGTaGAGGAGTCAGCATCTGAAT +
Preference number: 5 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGYNCVK*RSQHLN
Trigger: ATTCAGATGCTGACTCCTCAACTTCACGCAATTATA...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp TTACTAGACAGACAGAAGAATATGCCAACATTATTGTCCATTTGTACACTGGGATTTGTTCTGGGATTTTaGTTGTTCAGACTTAGTGCA +
Preference number: 5 (lower is better)
Translates to: LLDRQKNMPTLLSICTLGFVLGF*LFRLSA
Trigger: TGCACTAAGTCTGAACAACAAAAATCCCAGAACAAA...TCCCAGTGTACAAATGGACAATAATGTTGGCATATTCTTCTGTCTGTCTAGTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS-3UTR CAA 90 bp AAAAGTACAAATTTAGCTTCAGTCCAGTCTTTGACTTTGGGAAAGATGGAAATGAATTTTAATGGTCCCTaGTTTCTCCAGTTCGTGAAT +
Preference number: 5 (lower is better)
Translates to: KSTNLASVQSLTLGKMEMNFNGP*FLQFVN
Trigger: ATTCACGAACTGGAGAAACAAGGGACCATTAAAATT...CATTTCCATCTTTCCCAAAGTCAAAGACTGGACTGAAGCTAAATTTGTACTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049483.14
ENSMUST00000090952.11
ENSMUST00000127122.9
CDS GCA 72 bp AGCGGGACACACTGTTGCCCACAGGTGAGGGCAGGTTaGTCCCTCTGTGCAGGTCCTCGATGGACCTGCTCC +
Preference number: 6 (lower is better)
Translates to: SGTHCCPQVRAG*SLCAGPRWTCS
Trigger: GGAGCAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp GAGCGGGACACACTGTTGCCCACAGGTGAGGGCAGGTaGCTCCCTCTGTGCAGGTCCTCGATGGACCTGCTC +
Preference number: 6 (lower is better)
Translates to: ERDTLLPTGEGR*LPLCRSSMDLL
Trigger: GAGCAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 90 bp TCCTCCAGTTCACCTGGCTCGGGCATCGGCAGCTTCAATGGCACGTaGTGCGCCTTGAAATCGGTCTGCTGCGAGTCCATGCTCCCCGCG +
Preference number: 6 (lower is better)
Translates to: SSSSPGSGIGSFNGT*CALKSVCCESMLPA
Trigger: CGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCGAGCCAGGTGAACTGGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS TCA 72 bp CGGGCATCGGCAGCTTCAATGGCACGTTGTGCGCCTTaGAATCGGTCTGCTGCGAGTCCATGCTCCCCGCGT +
Preference number: 6 (lower is better)
Translates to: RASAASMARCAP*NRSAASPCSPR
Trigger: ACGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp TCGGGCATCGGCAGCTTCAATGGCACGTTGTGCGCCTaGAAATCGGTCTGCTGCGAGTCCATGCTCCCCGCG +
Preference number: 6 (lower is better)
Translates to: SGIGSFNGTLCA*KSVCCESMLPA
Trigger: CGCGGGGAGCATGGACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp CCTGGCTCGGGCATCGGCAGCTTCAATGGCACGTTGTaGGCCTTGAAATCGGTCTGCTGCGAGTCCATGCTC +
Preference number: 6 (lower is better)
Translates to: PGSGIGSFNGTL*ALKSVCCESML
Trigger: GAGCATGGACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCGAGCCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 72 bp CTCCAGTTCACCTGGCTCGGGCATCGGCAGCTTCAATaGCACGTTGTGCGCCTTGAAATCGGTCTGCTGCGA +
Preference number: 6 (lower is better)
Translates to: LQFTWLGHRQLQ*HVVRLEIGLLR
Trigger: TCGCAGCAGACCGATTTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCGAGCCAGGTGAACTGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp TCACCTGGCTCGGGCATCGGCAGCTTCAATGGCACGTaGTGCGCCTTGAAATCGGTCTGCTGCGAGTCCATG +
Preference number: 6 (lower is better)
Translates to: SPGSGIGSFNGT*CALKSVCCESM
Trigger: CATGGACTCGCAGCAGACCGATTTCAAGGCGCACAACGTGCCATTGAAGCTGCCGATGCCCGAGCCAGGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp GAAGTGCAGAATGTCTTCCAGAGCGGGACACACTGTTaGCCACAGGTGAGGGCAGGTTGCTCCCTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: EVQNVFQSGTHC*PQVRAGCSLCA
Trigger: TGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCTCTGGAAGACATTCTGCACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 72 bp ATTCAGCACGATGGCAAAGCGCTCCTCCAGTTCACCTaGCTCGGGCATCGGCAGCTTCAATGGCACGTTGTG +
Preference number: 6 (lower is better)
Translates to: IQHDGKALLQFT*LGHRQLQWHVV
Trigger: CACAACGTGCCATTGAAGCTGCCGATGCCCGAGCCAGGTGAACTGGAGGAGCGCTTTGCCATCGTGCTGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp GTGAGAACAGGTTCGCAGAAAAACCGAGAGCCACGCTaGGCGGTGCGAGCGGTAAAGGGCACAGTCTTCAGC +
Preference number: 6 (lower is better)
Translates to: VRTGSQKNREPR*AVRAVKGTVFS
Trigger: GCTGAAGACTGTGCCCTTTACCGCTCGCACCGCCAAGCGTGGCTCTCGGTTTTTCTGCGAACCTGTTCTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000155586.9
CDS TCA 72 bp AGGGCTTCCTCTCTCGCTCATACAGCCGAAGCACTTTaGCCTCATTCTCAGTTGGCAAGAACCTCATCAAAC +
Preference number: 6 (lower is better)
Translates to: RASSLAHTAEAL*PHSQLARTSSN
Trigger: GTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTATGAGCGAGAGAGGAAGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp GTCATCTTCTGCAGCAGCCGCTCAATCTTACTGAACTaGATCATGAAACGGTCCTCGTCTGACAAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: VIFCSSRSILLN*IMKRSSSDKFS
Trigger: GGAGAACTTGTCAGACGAGGACCGTTTCATGATGCAGTTCAGTAAGATTGAGCGGCTGCTGCAGAAGATGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp GGAGACTTTGCATCCTGCTGCTCCATCAGGGCTTCTTaGTCTAGCAGTTTTTCCATAAGAGCTTGTTCCTGC +
Preference number: 6 (lower is better)
Translates to: GDFASCCSIRAS*SSSFSIRACSC
Trigger: GCAGGAACAAGCTCTTATGGAAAAACTGCTAGAGCAAGAAGCCCTGATGGAGCAGCAGGATGCAAAGTCTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp AGCAGGGTGTTGTGGTCATGCATGGTATACTCTCTCTaGGTTAAATCCATCCCCCTCTGCAGCTCCTTCACA +
Preference number: 6 (lower is better)
Translates to: SRVLWSCMVYSL*VKSIPLCSSFT
Trigger: TGTGAAGGAGCTGCAGAGGGGGATGGATTTAACCAAGAGAGAGTATACCATGCATGACCACAACACCCTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 90 bp AACTCTTTCAGCAGGGTGTTGTGGTCATGCATGGTATACTCTCTCTaGGTTAAATCCATCCCCCTCTGCAGCTCCTTCACATCCAGCAGA +
Preference number: 6 (lower is better)
Translates to: NSFSRVLWSCMVYSL*VKSIPLCSSFTSSR
Trigger: TCTGCTGGATGTGAAGGAGCTGCAGAGGGGGATGGATTTAACCAAGAGAGAGTATACCATGCATGACCACAACACCCTGCTGAAAGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS TCA 72 bp ATTTCTTCCTGGTTACAGCTGGGTCCAGGTAGCCTTTaGGCTTCTGTATGTACGTATGGGGAGGGTTCTTCA +
Preference number: 6 (lower is better)
Translates to: ISSWLQLGPGSL*ASVCTYGEGSS
Trigger: TGAAGAACCCTCCCCATACGTACATACAGAAGCTCAAAGGCTACCTGGACCCAGCTGTAACCAGGAAGAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp AATTATTTCATGCCCGCCTCTGACAAGACAAACGGCTaGCAACAGCTCCAAGACAAGAGCTTTTGTTCTGGG +
Preference number: 6 (lower is better)
Translates to: NYFMPASDKTNG*QQLQDKSFCSG
Trigger: CCCAGAACAAAAGCTCTTGTCTTGGAGCTGTTGGCAGCCGTTTGTCTTGTCAGAGGCGGGCATGAAATAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp GTGAAGTTCCCAATGAAGGCCATGATGGTCATCTTCTaGAGCAGCCGCTCAATCTTACTGAACTGCATCATG +
Preference number: 6 (lower is better)
Translates to: VKFPMKAMMVIF*SSRSILLNCIM
Trigger: CATGATGCAGTTCAGTAAGATTGAGCGGCTGCTGCAGAAGATGACCATCATGGCCTTCATTGGGAACTTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp AAGGGCTTCCTCTCTCGCTCATACAGCCGAAGCACTTaGACCTCATTCTCAGTTGGCAAGAACCTCATCAAA +
Preference number: 6 (lower is better)
Translates to: KGFLSRSYSRST*TSFSVGKNLIK
Trigger: TTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTATGAGCGAGAGAGGAAGCCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp CACACTTCGTCTCACCGCATCGGCTCGTCTGTAGGGTaGGTTTCTAAGATCTGTGATAATGTCTTCAATGGC +
Preference number: 6 (lower is better)
Translates to: HTSSHRIGSSVG*VSKICDNVFNG
Trigger: GCCATTGAAGACATTATCACAGATCTTAGAAACCAACCCTACAGACGAGCCGATGCGGTGAGACGAAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090952.11
CDS CAA 90 bp AAGTTCTCCAAGGGCTTCCTCTCTCGCTCATACAGCCGAAGCACTTaGACCTCATTCTCAGTTGGCAAGAACCTCATCAAACACTCAACA +
Preference number: 6 (lower is better)
Translates to: KFSKGFLSRSYSRST*TSFSVGKNLIKHST
Trigger: TGTTGAGTGTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTATGAGCGAGAGAGGAAGCCCTTGGAGAACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 72 bp TTGAACACGCCTTCTGAATTTCTTCCTGGTTACAGCTaGGTCCAGGTAGCCTTTGAGCTTCTGTATGTACGT +
Preference number: 6 (lower is better)
Translates to: LNTPSEFLPGYS*VQVAFELLYVR
Trigger: ACGTACATACAGAAGCTCAAAGGCTACCTGGACCCAGCTGTAACCAGGAAGAAATTCAGAAGGCGTGTTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp CCGGACAACATCCAGTTCCTTATTCCTCTGCATAAGTaGCTTTTCCAGTTCCACGATCTTGGACATGGCTTC +
Preference number: 6 (lower is better)
Translates to: PDNIQFLIPLHK*LFQFHDLGHGF
Trigger: GAAGCCATGTCCAAGATCGTGGAACTGGAAAAGCAACTTATGCAGAGGAATAAGGAACTGGATGTTGTCCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 72 bp CAAAGACAGGGAAGAACACGGAGGGTGGAGTTGTCTTaGGATTTTCGCCAAAATATTTCACCACATCATCAA +
Preference number: 6 (lower is better)
Translates to: QRQGRTRRVELS*DFRQNISPHHQ
Trigger: TTGATGATGTGGTGAAATATTTTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTCCCTGTCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 72 bp CACAAATCGAACAAAGACAGGGAAGAACACGGAGGGTaGAGTTGTCTTGGGATTTTCGCCAAAATATTTCAC +
Preference number: 6 (lower is better)
Translates to: HKSNKDREEHGG*SCLGIFAKIFH
Trigger: GTGAAATATTTTGGCGAAAATCCCAAGACAACTCCACCCTCCGTGTTCTTCCCTGTCTTTGTTCGATTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp ATTGGCTTCTTAATTTTCACAGCTGCTAATCCTGAGTaGAAAACCACTGTAGGTGAAGAAGTCCCAGGCAGC +
Preference number: 6 (lower is better)
Translates to: IGFLIFTAANPE*KTTVGEEVPGS
Trigger: GCTGCCTGGGACTTCTTCACCTACAGTGGTTTTCAACTCAGGATTAGCAGCTGTGAAAATTAAGAAGCCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp ACTTGTCGCCTTCTTAATTCCGCAATTAACTCTTGCTaGTGCCTCTTTGATTTATGGGAAGGAGACTTTGCA +
Preference number: 6 (lower is better)
Translates to: TCRLLNSAINSC*CLFDLWEGDFA
Trigger: TGCAAAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGAATTAAGAAGGCGACAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp GTCACTTTACTTGATGCCTTCTGTGTTATTTTCTGCTaGCTTGAAGAAAGATCAATGGCAGGACCTTGGGCT +
Preference number: 6 (lower is better)
Translates to: VTLLDAFCVIFC*LEERSMAGPWA
Trigger: AGCCCAAGGTCCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATAACACAGAAGGCATCAAGTAAAGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS TCA 72 bp AGGGCCAAGATGATCTCCAGAATCTTCTTGAGCTTTTaGGATGACTTGATAGAGACGGATGCTGCTATAATT +
Preference number: 6 (lower is better)
Translates to: RAKMISRIFLSF*DDLIETDAAII
Trigger: AATTATAGCAGCATCCGTCTCTATCAAGTCATCTCAAAAGCTCAAGAAGATTCTGGAGATCATCTTGGCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 90 bp TGCTTGCTTGAAGAAAGATCAATGGCAGGACCTTGGGCTTTTGTCTaGAATATTTCTTCAAATTCGTCCACATTTAAGTCCTCTAGGATC +
Preference number: 6 (lower is better)
Translates to: CLLEERSMAGPWAFV*NISSNSSTFKSSRI
Trigger: GATCCTAGAGGACTTAAATGTGGACGAATTTGAAGAAATATTCAAGACAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAAGCAAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS TCA 72 bp GAAATTTCCAGTTCTCTTAGCACTTGTGTAGATTCTTaGACACGCCTTCTGAATTTCTTCCTGGTTACAGCT +
Preference number: 6 (lower is better)
Translates to: EISSSLSTCVDS*TRLLNFFLVTA
Trigger: AGCTGTAACCAGGAAGAAATTCAGAAGGCGTGTTCAAGAATCTACACAAGTGCTAAGAGAACTGGAAATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS GCA 72 bp TTAACTTGTCGCCTTCTTAATTCCGCAATTAACTCTTaGTGCTGCCTCTTTGATTTATGGGAAGGAGACTTT +
Preference number: 6 (lower is better)
Translates to: LTCRLLNSAINS*CCLFDLWEGDF
Trigger: AAAGTCTCCTTCCCATAAATCAAAGAGGCAGCAGCAAGAGTTAATTGCGGAATTAAGAAGGCGACAAGTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CCA 72 bp TCTCATCCGCAGACTTCCCAGCTTTCCTTAAAGTTATaGCAAGATTTTTGGCTCGATTTGCTTCTAATAATG +
Preference number: 6 (lower is better)
Translates to: SHPQTSQLSLKL*QDFWLDLLLIM
Trigger: CATTATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAGCTGGGAAGTCTGCGGATGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 90 bp TCTAATAATGTCACTTTACTTGATGCCTTCTGTGTTATTTTCTGCTaGCTTGAAGAAAGATCAATGGCAGGACCTTGGGCTTTTGTCTTG +
Preference number: 6 (lower is better)
Translates to: SNNVTLLDAFCVIFC*LEERSMAGPWAFVL
Trigger: CAAGACAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATAACACAGAAGGCATCAAGTAAAGTGACATTATTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS TCA 72 bp TCTCCATGGTACTTTCCACACTTTCAAAGTCAAAAGTaGCTGCATACTGTGCAAAAGACAAATACTCCACAA +
Preference number: 6 (lower is better)
Translates to: SPWYFPHFQSQK*LHTVQKTNTPQ
Trigger: TTGTGGAGTATTTGTCTTTTGCACAGTATGCAGTCACTTTTGACTTTGAAAGTGTGGAAAGTACCATGGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 72 bp GAAGAAAGATCAATGGCAGGACCTTGGGCTTTTGTCTaGAATATTTCTTCAAATTCGTCCACATTTAAGTCC +
Preference number: 6 (lower is better)
Translates to: EERSMAGPWAFV*NISSNSSTFKS
Trigger: GGACTTAAATGTGGACGAATTTGAAGAAATATTCAAGACAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9
CDS CAA 90 bp ACTTCCCAGCTTTCCTTAAAGTTATGGCAAGATTTTTGGCTCGATTaGCTTCTAATAATGTCACTTTACTTGATGCCTTCTGTGTTATTT +
Preference number: 6 (lower is better)
Translates to: TSQLSLKLWQDFWLD*LLIMSLYLMPSVLF
Trigger: AAATAACACAGAAGGCATCAAGTAAAGTGACATTATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAGCTGGGAAGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000049483.14
ENSMUST00000050719.13
ENSMUST00000090952.11
ENSMUST00000127122.9
ENSMUST00000155586.9